RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14605
(139 letters)
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B,
MI2-beta, PHD, protein binding, peptide binding metal
binding protein; NMR {Homo sapiens}
Length = 61
Score = 82.1 bits (203), Expect = 5e-22
Identities = 40/53 (75%), Positives = 48/53 (90%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
+T+HQDYCEVCQQGGEIILCDTCPRAYH+ CLDP++++ PEGKWSCP C +G
Sbjct: 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo
sapiens} PDB: 2ke1_A 2kft_A
Length = 66
Score = 82.1 bits (203), Expect = 5e-22
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
+ +++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C C+ E
Sbjct: 2 AMAQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 61
Query: 66 SPPAE 70
E
Sbjct: 62 PRAEE 66
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 80.6 bits (199), Expect = 1e-21
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS 66
H+D+C VC++ G++++CDTC R YHL CLDP L P+G W CPRC + +
Sbjct: 1 HMIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEA 59
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 79.3 bits (196), Expect = 5e-21
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ H+D+C VC++ G++++CDTC R YHL CLDP L P+G W CPRC
Sbjct: 3 SGSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding
protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A*
1mm3_A
Length = 61
Score = 78.6 bits (194), Expect = 9e-21
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62
H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 78.8 bits (194), Expect = 2e-20
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
+ C VCQ+ G++++C+ C +HL C P L + P +WSC C +
Sbjct: 19 GTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEE 78
Query: 66 SPPAEEVKE 74
+ K
Sbjct: 79 DVDLQACKL 87
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 71.8 bits (175), Expect = 8e-17
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 13 DYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C VCQ+ G++++C+ C +HL C P L + P +WSC C
Sbjct: 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 64.3 bits (157), Expect = 3e-15
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
C+VC++ GE +ILCD C +A+HL CL P L E P+G+W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 66.5 bits (162), Expect = 8e-15
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPP 68
++D+C VCQ GGE++ C+ CP+ +HL C P L P G+W C C PE
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDC 60
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 63.4 bits (154), Expect = 2e-14
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 8 QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV-SDGPPE 63
Q C+VC +G E ++ CD C YH+ CL P L E P G W CP+C+ ++
Sbjct: 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQP 71
Query: 64 TASPPAEEVKEKEVLCA 80
+ E+ ++ L
Sbjct: 72 PEAFGFEQATQEYSLSG 88
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 77
Score = 61.8 bits (150), Expect = 6e-14
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 10 EHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCVSD 59
H C VC E +LCD C AYH+ CL+P LD+ PE W CP C +D
Sbjct: 24 CHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 64.9 bits (157), Expect = 6e-14
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67
++D+C VCQ GG+++ C+ CP+ +HL C P L P G W C C G PE
Sbjct: 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYD 62
Query: 68 P 68
Sbjct: 63 C 63
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 62.9 bits (152), Expect = 1e-13
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRC 56
+ C C +GG +I CD C A+ C+ L +W C C
Sbjct: 59 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 114
Score = 29.4 bits (65), Expect = 0.22
Identities = 6/38 (15%), Positives = 9/38 (23%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
I+ C C + + D C C
Sbjct: 9 DGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNC 46
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 61.7 bits (149), Expect = 2e-13
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRC 56
+ C C +GG +I CD C A+ C+ L +W C C
Sbjct: 53 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYIC 108
Score = 30.5 bits (68), Expect = 0.082
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 22 GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
I+ C C + + D C C
Sbjct: 6 MGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNC 40
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 60.9 bits (147), Expect = 2e-12
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 15 CEVCQQG---GEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
C +C + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 226
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 58.5 bits (141), Expect = 2e-12
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 5 QDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
Q ++ + C + +++ CD C R YH+ CL+P + E PEG WSC C
Sbjct: 54 QCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106
Score = 37.3 bits (86), Expect = 3e-04
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 14 YCEVCQQGG----------EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
YC+ C G E++ C C R+ H CL L+ T K +C+
Sbjct: 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCI 56
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex;
1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A
2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 57.1 bits (138), Expect = 3e-12
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
C +C + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 70
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone,
methylation, UHRF1, PHD, ligase-NUCL protein complex;
1.80A {Homo sapiens}
Length = 77
Score = 55.6 bits (134), Expect = 1e-11
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 15 CEVCQQG---GEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
C +C + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 55.8 bits (134), Expect = 3e-11
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 8 QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
Q C+ C+Q GE +++CDTC + YH CL P + P W C C
Sbjct: 50 QCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103
Score = 53.1 bits (127), Expect = 3e-10
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 8 QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C VC G+ C TC + YH CLD + W CP C
Sbjct: 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 54.7 bits (131), Expect = 5e-11
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 6 DLQTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDET----PEGKWSCPRC 56
D E C VC+Q +++ C C YH C P++ + P W C RC
Sbjct: 10 DFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69
Query: 57 VSDGPPETASPP 68
Sbjct: 70 TRQMKRMAQKNQ 81
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 55.1 bits (132), Expect = 6e-11
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 11 HQDYCEVCQQGGE----IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C C+ G+ ++ CD+C R +H+ C DP L P+G W C C
Sbjct: 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
Score = 40.0 bits (93), Expect = 3e-05
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 12/63 (19%)
Query: 8 QTEHQDYCEVCQQGG---------EIILCDTCPRAYHLCCLDPEL---DETPEGKWSCPR 55
E C C E+I C C + H CL +W C
Sbjct: 1 HMEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIE 60
Query: 56 CVS 58
C +
Sbjct: 61 CKT 63
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 52.5 bits (126), Expect = 2e-10
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
C C + G +I CD C YH C+ E +W CP+C + +
Sbjct: 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 53.6 bits (128), Expect = 4e-10
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 11 HQDYCEVCQQGGEIILCDT--CPRAYHLCCLDPELDE------TPEGKWSCPRC 56
+Q YC +C G E+++C C R + + C+D + E W+C C
Sbjct: 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMC 131
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 51.0 bits (122), Expect = 6e-10
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 15 CEVCQQG-----GEIILCDTCPRAYHLCCLDPELDE---TPEGKWSCPRCV 57
C +CQ+ E+++CD C + YH C P +D + KW C +CV
Sbjct: 9 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 52.7 bits (125), Expect = 3e-09
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 11 HQDYCEVCQQGGEIILCD--TCPRAYHLCCLDPELDE------TPEGKWSCPRC 56
+Q YC +C G +++C C R Y C+D + W C C
Sbjct: 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A*
3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 49.5 bits (118), Expect = 2e-08
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 9 TEHQDYCEVCQQGGE----IILCDTCPRAYHLCCLD-PELDETPEGKWSCPRCVSDGPPE 63
++ + YC +C+ + I CD C YH C+ + + ++ CP+C S
Sbjct: 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAM 63
Query: 64 TASPPAEEVKEKE 76
T P E +
Sbjct: 64 TVLTPLTEKDYEG 76
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 47.2 bits (112), Expect = 2e-08
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 3 HIQDLQTEHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
H + C +C G I+ CD C A H C PEG+W C C+
Sbjct: 7 HHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV--PYIPEGQWLCRHCL 64
Query: 58 S 58
Sbjct: 65 Q 65
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 46.2 bits (109), Expect = 8e-08
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 10 EHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
+ C +C G I+ CD C A H C PEG+W C C+
Sbjct: 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV--PYIPEGQWLCRHCLQ 74
>1wen_A Inhibitor of growth family, member 4; ING1-like protein;
structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 40.7 bits (95), Expect = 5e-06
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 6 DLQTEHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
+ YC +C Q GE+I CD +H C+ L P GKW CPRC +
Sbjct: 10 PVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66
Query: 61 PPETA 65
P +
Sbjct: 67 GPSSG 71
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 40.5 bits (94), Expect = 1e-05
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 5 QDLQTEHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
+ YC +C Q GE+I CD +H C+ L P GKW CPRC +
Sbjct: 29 MPVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85
Query: 60 GPPETA 65
P +
Sbjct: 86 SGPSSG 91
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 39.5 bits (92), Expect = 2e-05
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 8 QTEHQDYCEVCQQ--GGEIILCD--TCPRA-YHLCCLDPELDETPEGKWSCPRC 56
+ YC +C Q GE++ CD CP +H C+ L E P+GKW CP+C
Sbjct: 2 SSGSSGYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQC 52
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 38.7 bits (90), Expect = 2e-05
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 6 DLQTEHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
+ YC +C Q GE+I CD +H C+ L P+GKW CP+C D
Sbjct: 5 AIDPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDN 61
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 37.5 bits (87), Expect = 7e-05
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 9 TEHQDYCEVCQQG--GEIILCDTCPRA---YHLCCLDPELDETPEGKWSCPRCVSD 59
+ YC +C Q GE+I CD +H C+D L P+GKW CPRCV +
Sbjct: 6 SNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 37.5 bits (87), Expect = 9e-05
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 13 DYCEVCQQ----GGEIILCDTCPRAYHLCC--LDPELDETPEGKWSCPRCVSDGPPETA 65
C C + I CD C +H C + P E + ++ CP C + P +
Sbjct: 7 GQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIK-QYKCPSCSNKSGPSSG 64
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A
2qic_A*
Length = 60
Score = 36.0 bits (83), Expect = 3e-04
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 10 EHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
YC +C Q GE+I CD +H C+ L P GKW CPRC +
Sbjct: 8 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion
protein, signal transduction, transcription, metal BI
WNT proteins; 1.90A {Homo sapiens}
Length = 105
Score = 35.3 bits (80), Expect = 0.001
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 15 CEVCQQGGE-----IILCDTCPRAYHLCCL------DPELDETPEGKWSCPRCVSDGPPE 63
C C+ I+ +C + +H C L W+C C+
Sbjct: 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65
Query: 64 TASPPAEEVK 73
+ ++ V
Sbjct: 66 GSGSGSQFVY 75
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 34.0 bits (77), Expect = 0.003
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 5 QDLQTEHQDYCEVCQQG--GEIILCD--TCPRA-YHLCCLDPELDETPEGKWSCPRCVSD 59
+ + + YC C+ G ++ CD CP +H C+ L + P+GKW C + +
Sbjct: 19 EGNNNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75
Query: 60 GPPETASP 67
+ +
Sbjct: 76 IANQRSKS 83
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 33.3 bits (76), Expect = 0.004
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 21 GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
G ++ CD C +H C+ + K+ C RC+ P +
Sbjct: 28 GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSSG 72
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 33.0 bits (75), Expect = 0.005
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 14 YCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPET 64
YC VC+ +I CD C +H C+ E +E P+ + CP C T
Sbjct: 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKST 66
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 32.2 bits (73), Expect = 0.010
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 14 YCEVCQQ---GGEIILCDTCPRAYHLCCL-----DPELDETPEGKWSCPRCVSDGPPETA 65
YC +C+Q +I CD C +H C+ L E + CP C P +
Sbjct: 18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSSG 76
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 31.6 bits (72), Expect = 0.012
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C C + G +I C+ C HL C PE + C +C
Sbjct: 6 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKC 49
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 33.4 bits (75), Expect = 0.012
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 13 DYCEVCQQ-------GGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRCVS 58
++C +C + +++ C C R H C + + ++C C
Sbjct: 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 62
Query: 59 DGPPETASPPAEEVKEKEVLC 79
P E +E++
Sbjct: 63 RHPAEWRLALEKELQISLKQV 83
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 31.7 bits (72), Expect = 0.015
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 5 QDLQTEHQDYCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
++L + C C + G +I C+ C HL C PE + C +C
Sbjct: 12 ENLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKC 64
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 31.1 bits (70), Expect = 0.032
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 14 YCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPETASP 67
YC +C+Q +I C C +H C+ E + + + CP C + P
Sbjct: 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKN 71
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling
pathway, WNT signaling complex, chromosomal
rearrangement, signaling protein; 1.59A {Homo sapiens}
PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 28.9 bits (64), Expect = 0.14
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 14 YCEVCQQ----GGEIILCDT-CPRAYHLCC------LDPELDETPEGKWSCPRCVS 58
C +C + ILC+ C + +H C L W C C++
Sbjct: 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 28.0 bits (62), Expect = 0.24
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 25 ILCD-TCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ CD C +H C+ + + C C
Sbjct: 19 VQCDGGCDEWFHQVCVGVSPEMAENEDYICINC 51
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 28.9 bits (65), Expect = 0.36
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 12/96 (12%)
Query: 44 DETPEGKWSCPRCVSDGPPETASPPAEEVKEKE---VLCAFLKFQSAKDIDLAIQ----- 95
P P + + E + + A+L + +DI L
Sbjct: 33 TPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLE 92
Query: 96 -RGHWERRRYDRDREKEKKEKEEARIYGQMARQILL 130
R R E E+ E ++ R I L
Sbjct: 93 IRAK---RSPLMITESERIIYSEIPEEEEIYRTIKL 125
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.38
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
Query: 69 AEEVKEKEVLCAFLKFQSAKDIDLAIQRGHWERRRYDRDREKEKKEKEEARI 120
A +V E+E + ++ KD++ W +R+ E+ +K K RI
Sbjct: 104 ASKVMEQE-----WREKAKKDLE------EWNQRQ----SEQVEKNKINNRI 140
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 29.2 bits (64), Expect = 0.49
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 14 YCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPETASPP 68
YC +C+ +I CD C +H C+ E ++ + + CP C P
Sbjct: 7 YC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKR 65
Query: 69 AEEVKEKEVLCAFLKFQSAKDIDLAIQRGHWERRRYDRDREKEKKEKEE 117
K + + ++ ++ + + E
Sbjct: 66 RGSSKGHDTHKGKPVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLTVE 114
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 28.5 bits (63), Expect = 0.67
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 4 IQDLQTEHQDYCEVCQQGGEIIL----CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
Q ++ + D ++C +++ C+TC HL C+ + CP C
Sbjct: 169 EQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226
Query: 60 GPPETAS 66
P E
Sbjct: 227 WPHEIPK 233
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Length = 89
Score = 26.7 bits (58), Expect = 1.2
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 8 QTEHQDYCEVCQQ--GGEIILCDTCPRAYHLCCLD-------------PELDETPEGKWS 52
+ + C+VC+ + C C R +H CL E+ T G WS
Sbjct: 11 PVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETG-WS 69
Query: 53 CPRC 56
C C
Sbjct: 70 CHYC 73
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 27.1 bits (60), Expect = 2.0
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 27 CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPE 63
+ C +CC PE P + P P
Sbjct: 81 ANECESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPSF 117
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA
binding protein-RNA complex; 1.85A {Homo sapiens} PDB:
3nna_A 3nnc_A 2dhs_A 3nnh_A
Length = 175
Score = 26.8 bits (60), Expect = 2.3
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 79 CAFLKFQSAKDIDLAIQ---------RGHWERRRYDRDREKEKKEKEEARIY 121
C F+ F + K A H + D EK + + +++
Sbjct: 49 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVE-DRKLF 99
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 27.0 bits (58), Expect = 2.3
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 8 QTEHQDYCEVCQQGGEI------ILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCVSDG 60
+ + + + I CD+C YH C E E K+ CP+CV
Sbjct: 36 KEKEKPLMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHT 95
Query: 61 PP 62
Sbjct: 96 GH 97
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 26.8 bits (59), Expect = 2.9
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 95 QRGHWERRRYDRDREKEKKEKEEARIYGQMARQI 128
W+ ++ D E+E+K + R I
Sbjct: 992 DPSIWDLKQELEDAEEERKLMMAEARAKRTHRVI 1025
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 26.4 bits (58), Expect = 4.6
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 96 RGHWERRRYDRDREKEKKEKEEARIYGQMARQILLALF 133
W+ ++ D E+E+K + R I +
Sbjct: 990 PSIWDLKQELEDAEEERKLMMAEARAKRTHRVINHPYY 1027
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 26.0 bits (56), Expect = 4.6
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 2 SHIQDLQTEHQDYCEVC----QQGGEI--ILCD--TCPRAYHLCCLDPELDETPEGK--- 50
D + + C +C GGE+ + CD C H CL+ +GK
Sbjct: 298 GPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFL 357
Query: 51 ----WSCPRC 56
CP C
Sbjct: 358 EVSFGQCPFC 367
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A
{Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A*
3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Length = 262
Score = 26.1 bits (56), Expect = 4.7
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 97 GHWERRRYDRDREKEKKEKEEAR 119
G WE + +K+ + + +AR
Sbjct: 222 GGWEGGLAEGYFKKDTQGQIKAR 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 4.8
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 69 AEEVKEKEVLCAFLKFQSAKDIDLA 93
A +++ + + L F + ID+
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDII 1880
>3bul_A Methionine synthase; transferase, reactivation conformation,
cobalamin, intermodular interactions, amino-acid
biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli}
SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A*
1k7y_A* 1k98_A* 1bmt_A*
Length = 579
Score = 25.9 bits (57), Expect = 5.6
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 67 PPAEEVKEKEVLCAFLKFQSAKDIDLAIQRGHWERRRYDRDREKEKKEKEEARIYGQMAR 126
PP + + A ++ ID W +++ EA+ + A
Sbjct: 275 PPVAHRLGVQEVEASIE-TLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDAN 333
Query: 127 QIL 129
+L
Sbjct: 334 DML 336
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 26.0 bits (58), Expect = 6.1
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 11/48 (22%)
Query: 29 TCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKE 76
TCP + PE+ ++ G CP C PET + EV E
Sbjct: 41 TCP-------MHPEIRQSAPG--HCPLCGMALEPETVT--VSEVVSPE 77
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 25.8 bits (55), Expect = 7.4
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 14 YCEVCQQ----GGEIILCDTCPRAYHLCCLD-PELDETPEGKWSCPRC 56
YC VC+Q +I CD C +H C+ E + CP C
Sbjct: 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.438
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,234,573
Number of extensions: 128887
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 109
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)