RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14605
(139 letters)
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 66.9 bits (163), Expect = 1e-16
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 67.0 bits (163), Expect = 2e-16
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPA 69
+ C VCQ+ G++++C+ C +HL C P L + P +WSC C +
Sbjct: 5 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDL 64
Query: 70 EEVK 73
+ K
Sbjct: 65 QACK 68
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 54.2 bits (130), Expect = 9e-12
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C+VC++ GE +ILCD C +A+HL CL P L E P+G+W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 51.8 bits (123), Expect = 2e-10
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 2 SHIQDLQTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETP----EGKWS 52
S D E C VC+Q +++ C C YH C P++ + W
Sbjct: 6 SGADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWY 65
Query: 53 CPRCV 57
C RC
Sbjct: 66 CARCT 70
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 50.8 bits (121), Expect = 3e-10
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 12 QDYCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPETA 65
C C + I CD C +H C+ ++ CP C + P +
Sbjct: 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPSSG 64
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 50.0 bits (119), Expect = 7e-10
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 21 GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
G ++ CD C +H C+ + K+ C RC+ P +
Sbjct: 28 GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSSG 72
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 45.8 bits (108), Expect = 2e-08
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 14 YCEVCQQGGEIILCDTCPRAYHLCCL-----DPELDETPEGKWSCPRCVSDGPPETA 65
C +I CD C +H C+ L E + CP C P +
Sbjct: 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSSG 76
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 37.3 bits (86), Expect = 4e-05
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 14 YCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPET 64
YC +C+Q +I C C +H C+ E + + + CP C + P
Sbjct: 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI 68
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 33.0 bits (75), Expect = 0.002
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 14 YCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
YC +C Q GE+I CD +H C+ P+GKW CP+C D P +
Sbjct: 18 YC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLT--YKPKGKWYCPKCRGDSGPSSG 71
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 31.8 bits (72), Expect = 0.004
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 14 YCEVCQQG--GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
YC +C Q GE+I CD +H C+ L P GKW CPRC +
Sbjct: 4 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 51
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 29.7 bits (66), Expect = 0.033
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 14 YCEVCQQGGEIILCD--TCPRAYHLCCLD-----PELDETPEGKWSCPRCVSDGPPETA 65
C + +I C+ C H+ C+ + + + C C P +
Sbjct: 20 VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSSG 78
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 26.4 bits (58), Expect = 0.59
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 8 QTEHQDYCEVCQ--QGGEIILCDTCPRAYHLCCLDP----------ELDETP--EGKWSC 53
+ + C+VC+ + C C R +H CL E+ E E WSC
Sbjct: 11 PVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSC 70
Query: 54 PRCVSDGP 61
C +
Sbjct: 71 HYCDNINL 78
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 24.3 bits (52), Expect = 3.1
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 1 MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+HI DL E Q + C A+H C+ L + + CP
Sbjct: 28 RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL----KTRQVCPLD 79
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 23.3 bits (50), Expect = 3.8
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 15 CEVC----QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C VC + G E C +H C+D L +CP C
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWL----GSHSTCPLC 49
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 23.8 bits (51), Expect = 4.6
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 79 CAFLKFQSAKDIDLAIQRGHW-ERRRYDRDREKEKKEKE 116
F++F + + + H + R D K+ ++
Sbjct: 52 FGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQD 90
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 23.8 bits (50), Expect = 5.4
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 1 MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE-TPEGKWSCPRCVSD 59
M + + C A+HL CL +G CP C +
Sbjct: 32 MEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91
Query: 60 GPPETASPP 68
+T + P
Sbjct: 92 YGEKTGTQP 100
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus
faecalis [TaxId: 1351]}
Length = 132
Score = 23.7 bits (51), Expect = 8.7
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 4 IQDLQTEHQDYCEVCQQGGEIILCDTC 30
+ Q + + ++L D
Sbjct: 42 LSGTQAKLAAILKEAGNVPTLVLADLK 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.438
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 559,692
Number of extensions: 26842
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 36
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.8 bits)