BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14606
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4
(Mi2b)
Length = 61
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 4 IQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
+ +T+HQDYCEVCQQGGEIILCDTCPRAYH+ CLDP++++ PEGKWSCP C +G
Sbjct: 3 LGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 86 GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
G + +LC+TC +YH CL DP + P W CP C
Sbjct: 20 GGEIILCDTCPRAYHMVCL-DPDMEKAPEGKWSCPHC 55
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
H+D+C VC++ G++++CDTC R YHL CLDP L P+G W CPRC
Sbjct: 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 76 EVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
E C+ C+ G Q L+C+TC+ YH CL P++ +P W CP+C
Sbjct: 5 EDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLKT-IPKGMWICPRC 49
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger
Protein 21a
Length = 56
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 9 TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ H+D+C VC++ G++++CDTC R YHL CLDP L P+G W CPRC
Sbjct: 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 76 EVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
E C+ C+ G Q L+C+TC+ YH CL P++ +P W CP+C
Sbjct: 9 EDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRC 53
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With
C- Terminal Loop Replaced By Corresponding Loop From
Wstf
Length = 61
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
H ++C VC+ GGE++ CDTCP +YH+ CL P L E P+G+W CPRC
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
C CK G + L C+TC SYH HCL P E+P W+CP+C+CP L GK
Sbjct: 11 FCRVCKD-GGELLCCDTCPSSYHIHCL-RPALYEVPDGEWQCPRCTCPALKGK 61
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
C CK G + L C+TC SYH HCL P+ E+P W CP+C+CP L GK
Sbjct: 11 FCRVCKD-GGELLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALKGK 61
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 7 LQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS 66
+ +++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C C+ E
Sbjct: 3 MAQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV-Q 61
Query: 67 PPAEE 71
P AEE
Sbjct: 62 PRAEE 66
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 72 VKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
++ E CA C+ G + + C+ C ++H CL P+ E+P+ W+C C
Sbjct: 4 AQKNEDECAVCRD-GGELICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSC 52
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 9 TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
++++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C C+
Sbjct: 2 SKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL 50
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
CA C+ G + + C+ C ++H CL P+ E+P+ W+C C
Sbjct: 8 CAVCRD-GGELICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSC 49
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 26/113 (23%)
Query: 15 CEVCQQGGEII---LCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEE 71
C VC G+++ C TC + YH CLD + W CP C
Sbjct: 10 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC--------------- 54
Query: 72 VKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
+C CK G+ + L+C+TC+ YH CL P+ +PT+GWKC C
Sbjct: 55 -----KVCQNCKQSGEDSKMLVCDTCDKGYHTFCL-QPVMKSVPTNGWKCKNC 101
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAE 70
++D+C VCQ GG+++ C+ CP+ +HL C P L P G W C C G PE
Sbjct: 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDN 65
Query: 71 EVKEKEVLCAKCKSPGDQ 88
K+ A+ SP DQ
Sbjct: 66 LQHSKKGKTAQGLSPVDQ 83
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
++D+C VCQ GGE++ C+ CP+ +HL C P L P G+W C C PE
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEV 56
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 8/59 (13%)
Query: 2 SHIQDLQTE----HQDYCEVCQQGGEIILCDT--CPRAYHLCCLDPELDETPEGKWSCP 54
S+ + ++TE H+DYC C GGE+++CD CP+AYHL CL+ L + P GKW CP
Sbjct: 1 SNARKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECP 57
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C+VC++ GE +ILCD C +A+HL CL P L E P+G+W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 79 CAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123
C C+ G D+ +LC+ CN ++H CL P E+P W+CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCL-RPALYEVPDGEWQCPACQ 48
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
C+VC +G E ++ CD C YH+ CL P L E P G W CP+C+
Sbjct: 19 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 87 DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
D+ L C+ C+ +YH CL P+ E+P W+CPKC
Sbjct: 29 DKLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKC 63
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C + +++ CD C R YH+ CL+P + E PEG WSC C
Sbjct: 64 CGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 32/122 (26%)
Query: 14 YCEVCQQGG----------EIILCDTCPRAYHLCCLDPELDET---PEGKWSCPRCVSDG 60
YC+ C G E++ C C R+ H CL L+ T KW C C S
Sbjct: 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSC- 61
Query: 61 PPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCP 120
+LC ++ DQ L C+ C+ YH +CL P+ E P W C
Sbjct: 62 ----------------ILCGTSEND-DQLLFCDDCDRGYHMYCLNPPV-AEPPEGSWSCH 103
Query: 121 KC 122
C
Sbjct: 104 LC 105
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C VCQ+ G++++C+ C +HL C P L + P +WSC C
Sbjct: 5 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 14 YCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C VCQ+ G++++C+ C +HL C P L + P +WSC C
Sbjct: 27 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 25 ILCDTCPRAYHLCCLDPELDETPEGK-WSCPRCVSD 59
+LCD C AYH+ CL+P LD+ PE + W CP C +D
Sbjct: 42 LLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 90 LLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
LLC+ CN +YH +CL P++ W CP C
Sbjct: 42 LLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 25 ILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 190 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 226
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
LC + P D+ L+C+ C+ ++H +CL P+ W CP+C
Sbjct: 179 LCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 25 ILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 206 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 241
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
LC + P D+ L+C+ C+ ++H +CL P+ W CP+C
Sbjct: 195 LCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 238
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 25 ILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 21 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 57
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
LC + P D+ L+C+ C+ ++H +CL P+ W CP+C
Sbjct: 10 LCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 53
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ ++ CD+C R +H+ C DP L P+G W C C
Sbjct: 72 KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 44 DETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVL---------CAKCKSPG---DQFLL 91
++ PE SC C + G P E + L C+ C+ G D L
Sbjct: 20 EKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLF 79
Query: 92 CETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
C++C+ +H C DP +P W C C
Sbjct: 80 CDSCDRGFHMECC-DPPLTRMPKGMWICQIC 109
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ ++ CD+C R +H+ C DP L P+G W C C
Sbjct: 70 KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 44 DETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVL---------CAKCKSPG---DQFLL 91
++ PE SC C + G P E + L C+ C+ G D L
Sbjct: 18 EKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLF 77
Query: 92 CETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
C++C+ +H C DP +P W C C
Sbjct: 78 CDSCDRGFHMECC-DPPLTRMPKGMWICQIC 107
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 30 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 72
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 87 DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
D+ L+C+ C+ ++H +CL P+ W CP+C
Sbjct: 33 DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 68
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 28 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 70
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 87 DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
D+ L+C+ C+ ++H +CL P+ W CP+C
Sbjct: 31 DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 25 ILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 42 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 60 GPPETASPPAEEVKEK-EVLCAKC-------KSPGDQFLLCETCNGSYHPHCLPDPIEGE 111
G PE + P + K+ LC C + D+ L+C+ C+ ++H +CL P+
Sbjct: 4 GSPEFSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSV 63
Query: 112 LPTSGWKCPKC 122
W CP+C
Sbjct: 64 PSEDEWYCPEC 74
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 28 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 87 DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
D+ L+C+ C+ ++H +CL P+ W CP+C
Sbjct: 31 DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSD 59
GE+I CD CP +H C+D L P+GKW CPRCV +
Sbjct: 20 GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 25 ILCDTCPRAYHLCCLDPELDETP-EGKWSCPRC 56
++CD C A+H+ CLDP L P E +W CP C
Sbjct: 39 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 87 DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
D+ L+C+ C+ ++H +CL P+ W CP+C
Sbjct: 36 DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
GE+I CD CP +H C+ L P+GKW CP+C D P +
Sbjct: 27 GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDSGPSSG 71
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 15 CEVCQQG-----GEIILCDTCPRAYHLCCLDPELDET---PEGKWSCPRCV 57
C +CQ+ E+++CD C + YH C P +D + + KW C +CV
Sbjct: 9 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
GE+I CD +H C+ L P GKW CPRC + P +
Sbjct: 27 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPSSG 71
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDP---IEGELP 113
C KCKSP CE C +Y P L +P + G P
Sbjct: 145 CPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATP 182
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDP---IEGELP 113
C KCKSP CE C +Y P L +P + G P
Sbjct: 146 CPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATP 183
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDP---IEGELP 113
C KCKSP CE C +Y P L +P + G P
Sbjct: 145 CPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATP 182
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDP---IEGELP 113
C KCKSP CE C +Y P L +P + G P
Sbjct: 158 CPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATP 195
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDP---IEGELP 113
C KCKSP CE C +Y P L +P + G P
Sbjct: 145 CPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATP 182
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVS 58
GE++ CD CP +H C+ L E P+GKW CP+C +
Sbjct: 17 GEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTA 54
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDG 60
GE+I CD CP +H C+ L P+GKW CP+C D
Sbjct: 22 GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDN 61
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
GE+I CD +H C+ L P GKW CPRC + P +
Sbjct: 47 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPSSG 91
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With
A Histone H3k4me3 Peptide
Length = 62
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD CP +H C+ L+ P+GKW CP+C
Sbjct: 22 GEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 57
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD +H C+ L P GKW CPRC
Sbjct: 21 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRC 56
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3
Histone Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3
Histone Peptide
Length = 55
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD +H C+ L P GKW CPRC
Sbjct: 16 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRC 51
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD +H C+ L P GKW CPRC
Sbjct: 21 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRC 56
>pdb|3ODS|A Chain A, Crystal Structure Of The K185a Mutant Of The N-Terminal
Domain Of Human Symplekin
Length = 415
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 86 GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQH 144
GD LL ++ N H + +EG + T P+ + +P + E SL R+PR H
Sbjct: 186 GDIILLLDSDNDGIRTHAIA-FVEGLIVT---LSPRMADSEIPRRQEHDISLDRIPRDH 240
>pdb|3ODR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Symplekin
Length = 415
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 86 GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQH 144
GD LL ++ N H + +EG + T P+ + +P + E SL R+PR H
Sbjct: 186 GDIILLLDSDNDGIRTHAIK-FVEGLIVT---LSPRMADSEIPRRQEHDISLDRIPRDH 240
>pdb|3O2T|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Symplekin
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 86 GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQH 144
GD LL ++ N H + +EG + T P+ + +P + E SL R+PR H
Sbjct: 157 GDIILLLDSDNDGIRTHAIK-FVEGLIVTL---SPRMADSEIPRRQEHDISLDRIPRDH 211
>pdb|2LRI|C Chain C, Nmr Structure Of The Second Phd Finger Of Aire
(aire-phd2)
Length = 66
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62
C VC G +++ C C A+H C P P C C D P
Sbjct: 15 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62
>pdb|3O2Q|A Chain A, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2Q|D Chain D, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2S|A Chain A, Crystal Structure Of The Human Symplekin-Ssu72 Complex
pdb|4H3H|A Chain A, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3H|D Chain D, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3K|A Chain A, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
pdb|4H3K|D Chain D, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
Length = 351
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 85 PGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQH 144
GD LL ++ N H + +EG + T P+ + +P + E SL R+PR H
Sbjct: 156 AGDIILLLDSDNDGIRTHAIK-FVEGLIVTLS---PRMADSEIPRRQEHDISLDRIPRDH 211
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD +H C+ L P GKW CPRC
Sbjct: 21 GEMIGCDDPDCSIEWFHFACVG--LTTKPRGKWFCPRC 56
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
Q I+ CD C A H C + PEG+W C C+
Sbjct: 37 QNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHCL 73
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
Q I+ CD C A H C + PEG+W C C+
Sbjct: 28 QNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHCL 64
>pdb|3LDY|A Chain A, An Extraordinary Mechanism Of Dna Perturbation Exhibited
By The Rare- Cutting Hnh Restriction Endonuclease Paci
pdb|3M7K|A Chain A, Crystal Structure Of Paci-Dna Enzyme Product Complex
Length = 142
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEG 49
H YC + + G L T PR YH+ CL + ++ EG
Sbjct: 61 RHCGYCGI-SEAGFTSLHRTNPRGYHIQCLGVDRSDSFEG 99
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex
With A H3k4me3 Peptide
Length = 75
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 21 GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
G +I CD C YH C+ E +W CP+C +
Sbjct: 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2
Peptide And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2
Peptide And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 ILCDTCPRAYHLCCLDPE-LDETPEGKWSCPRCV 57
I CD+C YH C E + K+ CP+CV
Sbjct: 59 IGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCV 92
>pdb|4BBQ|A Chain A, Crystal Structure Of The Cxxc And Phd Domain Of Human
Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
pdb|4BBQ|B Chain B, Crystal Structure Of The Cxxc And Phd Domain Of Human
Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
Length = 117
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 88 QFLLCETCNGSYHPHCLPDPIEG----ELPTSGWKCPKC 122
+ + C CN HP CL EG ELP W+CPKC
Sbjct: 74 KLMECCICNEIVHPGCLQMDGEGLLNEELPNC-WECPKC 111
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 57 VSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCL 104
VS P + S E + C PG+Q + C+ +G Y CL
Sbjct: 271 VSYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCL 318
>pdb|2PV0|B Chain B, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|A Chain A, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|C Chain C, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PVC|B Chain B, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|A Chain A, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|C Chain C, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
Length = 386
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 11 HQDYCEVCQQGGEIILCDT--CPRAYHLCCLDPELDETPEGK------WSCPRCV 57
+Q YC +C G +++C C R Y C+D + GK W C C+
Sbjct: 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146
>pdb|1WEV|A Chain A, Solution Structure Of Phd Domain In Protein Np_082203
Length = 88
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 65 ASPPAEEVKEKEVLCAKCK----SPGDQFLLCETCNGSYHPHC-LPDPIEGEL--PTSGW 117
+S + E + C C+ + G+Q + C+ C+ YH C P + E+ P W
Sbjct: 5 SSGADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVW 64
Query: 118 KCPKCS 123
C +C+
Sbjct: 65 YCARCT 70
>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex With
Histone H3
Length = 159
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 11 HQDYCEVCQQGGEIILC--DTCPRAYHLCCLDPELD------ETPEGKWSCPRCVSDGP 61
+Q YC +C G E+++C + C R + + C+D + E W+C C G
Sbjct: 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGT 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.484
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,455,164
Number of Sequences: 62578
Number of extensions: 242948
Number of successful extensions: 567
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 125
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)