Query psy14606
Match_columns 145
No_of_seqs 127 out of 1505
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 16:01:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244|consensus 99.6 5.5E-17 1.2E-21 123.8 0.3 93 10-123 222-329 (336)
2 KOG0383|consensus 99.5 1.7E-14 3.8E-19 123.4 3.6 110 29-141 1-110 (696)
3 KOG1512|consensus 99.3 1.4E-12 3E-17 100.6 1.9 88 10-120 256-357 (381)
4 KOG4299|consensus 99.2 2.1E-11 4.6E-16 102.3 4.2 110 12-123 253-442 (613)
5 KOG4299|consensus 99.2 1.7E-11 3.6E-16 102.9 3.4 50 77-126 254-306 (613)
6 KOG4443|consensus 99.1 1.3E-11 2.7E-16 104.0 1.0 92 10-122 16-115 (694)
7 KOG1244|consensus 99.0 1.2E-10 2.7E-15 89.3 1.7 53 6-58 275-330 (336)
8 PF15446 zf-PHD-like: PHD/FYVE 99.0 1.1E-09 2.4E-14 78.8 5.5 89 14-108 1-143 (175)
9 KOG0383|consensus 98.9 7.4E-10 1.6E-14 95.3 3.5 115 8-124 43-223 (696)
10 PF00628 PHD: PHD-finger; Int 98.9 3.1E-10 6.8E-15 66.8 0.1 45 14-58 1-50 (51)
11 COG5141 PHD zinc finger-contai 98.8 1.3E-09 2.9E-14 89.6 0.7 99 7-107 188-336 (669)
12 smart00249 PHD PHD zinc finger 98.8 9.7E-09 2.1E-13 58.5 4.0 44 79-122 2-47 (47)
13 PF00628 PHD: PHD-finger; Int 98.8 5.1E-10 1.1E-14 65.9 -1.6 46 78-123 1-49 (51)
14 KOG4323|consensus 98.8 4E-09 8.8E-14 86.8 3.0 113 11-125 82-224 (464)
15 smart00249 PHD PHD zinc finger 98.7 9.6E-09 2.1E-13 58.5 3.3 43 14-56 1-47 (47)
16 KOG0955|consensus 98.7 8.8E-09 1.9E-13 91.9 4.2 116 8-125 215-396 (1051)
17 KOG0956|consensus 98.7 5.2E-09 1.1E-13 88.9 1.6 93 13-107 6-157 (900)
18 KOG0825|consensus 98.6 1.4E-08 3.1E-13 87.4 1.7 47 76-123 215-264 (1134)
19 KOG1473|consensus 98.5 1.1E-08 2.3E-13 90.7 -1.8 119 8-127 340-481 (1414)
20 KOG0825|consensus 98.4 8.5E-08 1.8E-12 82.8 2.1 48 13-60 216-267 (1134)
21 KOG1973|consensus 98.4 1.4E-07 3E-12 73.9 2.8 41 78-123 223-266 (274)
22 KOG1512|consensus 98.3 1.8E-07 3.9E-12 72.7 1.3 50 8-59 310-363 (381)
23 COG5034 TNG2 Chromatin remodel 98.3 5E-07 1.1E-11 69.0 2.5 46 74-123 219-268 (271)
24 KOG4443|consensus 98.3 2.9E-07 6.3E-12 78.1 1.3 116 10-125 66-202 (694)
25 cd04718 BAH_plant_2 BAH, or Br 98.2 7.8E-07 1.7E-11 63.3 2.3 29 33-61 1-29 (148)
26 KOG0954|consensus 98.1 1.1E-06 2.4E-11 75.5 2.5 77 10-104 269-351 (893)
27 KOG1973|consensus 98.0 2.5E-06 5.5E-11 66.8 2.3 46 13-60 220-269 (274)
28 COG5034 TNG2 Chromatin remodel 98.0 3.7E-06 8E-11 64.4 2.6 45 11-58 220-269 (271)
29 KOG0957|consensus 97.8 8.2E-06 1.8E-10 67.8 2.0 45 77-122 545-595 (707)
30 PF13831 PHD_2: PHD-finger; PD 97.8 4.9E-06 1.1E-10 45.5 0.1 34 22-57 2-36 (36)
31 KOG0957|consensus 97.8 9.9E-06 2.2E-10 67.3 1.4 44 14-57 546-596 (707)
32 KOG1245|consensus 97.3 4.1E-05 8.9E-10 71.1 -0.7 51 10-60 1106-1159(1404)
33 KOG1245|consensus 97.2 4.8E-05 1E-09 70.7 -1.1 63 73-139 1105-1169(1404)
34 KOG4323|consensus 97.0 0.00037 8E-09 57.9 2.1 47 14-60 170-225 (464)
35 KOG0955|consensus 96.9 0.0005 1.1E-08 62.2 2.5 45 76-123 219-267 (1051)
36 PF13832 zf-HC5HC2H_2: PHD-zin 96.5 0.0025 5.5E-08 42.9 2.9 84 14-107 2-88 (110)
37 KOG0954|consensus 96.4 0.001 2.2E-08 57.8 0.7 46 75-123 270-319 (893)
38 PF13831 PHD_2: PHD-finger; PD 95.8 0.00024 5.1E-09 38.8 -3.9 32 88-122 3-35 (36)
39 KOG1473|consensus 95.5 0.0083 1.8E-07 54.6 2.1 57 70-128 338-394 (1414)
40 KOG0956|consensus 95.4 0.0048 1E-07 53.5 0.3 45 78-125 7-57 (900)
41 COG5141 PHD zinc finger-contai 95.1 0.0071 1.5E-07 50.7 0.6 45 76-123 193-241 (669)
42 PF15446 zf-PHD-like: PHD/FYVE 94.7 0.016 3.5E-07 42.1 1.3 45 79-123 2-58 (175)
43 PF14446 Prok-RING_1: Prokaryo 94.6 0.019 4.2E-07 34.0 1.3 30 12-41 5-38 (54)
44 PF13771 zf-HC5HC2H: PHD-like 92.8 0.034 7.5E-07 35.8 0.2 31 76-107 36-69 (90)
45 PF13901 DUF4206: Domain of un 92.6 0.092 2E-06 39.4 2.4 36 78-123 154-196 (202)
46 PF12861 zf-Apc11: Anaphase-pr 92.6 0.035 7.5E-07 36.0 0.0 48 10-59 19-80 (85)
47 PF14446 Prok-RING_1: Prokaryo 92.4 0.084 1.8E-06 31.3 1.5 30 77-106 6-38 (54)
48 PF13639 zf-RING_2: Ring finge 91.7 0.015 3.4E-07 32.5 -2.1 41 13-57 1-44 (44)
49 PF11793 FANCL_C: FANCL C-term 91.3 0.026 5.5E-07 35.2 -1.7 47 12-58 2-63 (70)
50 PF13771 zf-HC5HC2H: PHD-like 90.5 0.13 2.8E-06 33.1 1.0 30 12-41 36-68 (90)
51 PF13832 zf-HC5HC2H_2: PHD-zin 90.4 0.13 2.7E-06 34.5 1.0 31 11-41 54-87 (110)
52 KOG4628|consensus 86.5 0.41 8.8E-06 38.9 1.6 44 13-59 230-276 (348)
53 PF12678 zf-rbx1: RING-H2 zinc 83.1 0.33 7.2E-06 30.4 -0.2 43 11-57 18-73 (73)
54 KOG1246|consensus 82.8 0.97 2.1E-05 41.1 2.5 48 12-59 155-204 (904)
55 KOG1081|consensus 81.1 1.2 2.5E-05 37.7 2.2 49 6-57 83-131 (463)
56 PF07227 DUF1423: Protein of u 80.3 1.5 3.2E-05 36.7 2.5 55 78-138 130-199 (446)
57 PF13901 DUF4206: Domain of un 80.1 1.3 2.7E-05 33.2 2.0 37 12-57 152-196 (202)
58 PF00130 C1_1: Phorbol esters/ 77.6 2 4.2E-05 24.6 1.9 31 10-40 9-44 (53)
59 cd00162 RING RING-finger (Real 77.1 0.56 1.2E-05 25.1 -0.6 40 15-57 2-42 (45)
60 PF10497 zf-4CXXC_R1: Zinc-fin 77.1 1 2.2E-05 30.3 0.6 30 94-123 35-68 (105)
61 KOG1246|consensus 76.3 2.6 5.6E-05 38.4 3.1 47 77-124 156-203 (904)
62 KOG3612|consensus 76.2 2.4 5.3E-05 36.3 2.7 51 10-60 58-109 (588)
63 PF12861 zf-Apc11: Anaphase-pr 75.8 0.62 1.3E-05 30.2 -0.7 44 78-123 34-78 (85)
64 PF08746 zf-RING-like: RING-li 75.2 0.83 1.8E-05 25.6 -0.2 40 15-56 1-43 (43)
65 PF07649 C1_3: C1-like domain; 74.8 0.7 1.5E-05 23.6 -0.5 26 78-103 2-29 (30)
66 smart00184 RING Ring finger. E 71.8 0.56 1.2E-05 24.1 -1.4 28 15-42 1-28 (39)
67 PF00641 zf-RanBP: Zn-finger i 71.5 2.9 6.2E-05 21.3 1.4 12 48-59 2-13 (30)
68 PF04810 zf-Sec23_Sec24: Sec23 71.5 1.9 4.2E-05 23.6 0.7 30 89-123 2-31 (40)
69 KOG1632|consensus 70.2 2.7 5.9E-05 34.2 1.6 36 88-123 74-111 (345)
70 PF03107 C1_2: C1 domain; Int 69.4 4.5 9.8E-05 20.6 1.8 26 14-39 2-30 (30)
71 KOG3612|consensus 67.9 5.5 0.00012 34.3 3.0 49 74-123 58-106 (588)
72 KOG2807|consensus 67.2 5.8 0.00013 32.1 2.8 44 75-123 329-374 (378)
73 KOG1829|consensus 66.4 1 2.2E-05 39.0 -1.6 29 87-123 529-557 (580)
74 smart00547 ZnF_RBZ Zinc finger 66.0 4.5 9.7E-05 19.6 1.3 10 49-58 1-10 (26)
75 cd00029 C1 Protein kinase C co 64.8 4.1 8.9E-05 22.7 1.2 30 11-40 10-44 (50)
76 KOG1701|consensus 61.6 0.42 9.1E-06 39.6 -4.6 28 13-40 275-304 (468)
77 KOG1081|consensus 61.4 8.5 0.00018 32.6 3.0 33 72-105 85-117 (463)
78 PF10367 Vps39_2: Vacuolar sor 59.6 6 0.00013 25.7 1.5 32 9-40 75-108 (109)
79 PF12773 DZR: Double zinc ribb 59.2 9.1 0.0002 21.6 2.0 8 50-57 29-36 (50)
80 KOG2752|consensus 58.6 9.8 0.00021 30.6 2.7 91 14-107 57-167 (345)
81 smart00109 C1 Protein kinase C 57.6 3.8 8.2E-05 22.6 0.2 30 11-40 10-43 (49)
82 PHA02929 N1R/p28-like protein; 56.5 4.1 8.9E-05 31.4 0.3 46 10-59 172-225 (238)
83 PF10080 DUF2318: Predicted me 53.6 9.7 0.00021 25.5 1.7 32 9-40 32-68 (102)
84 PF05191 ADK_lid: Adenylate ki 50.3 4.4 9.5E-05 21.8 -0.3 26 91-123 3-28 (36)
85 KOG0696|consensus 47.0 5 0.00011 34.0 -0.6 89 10-105 54-154 (683)
86 KOG0804|consensus 46.0 8.4 0.00018 32.4 0.5 71 10-96 173-247 (493)
87 PF13922 PHD_3: PHD domain of 45.8 5.3 0.00011 24.6 -0.5 26 79-107 36-61 (69)
88 KOG1734|consensus 45.7 5 0.00011 31.7 -0.8 48 10-59 222-279 (328)
89 PRK14559 putative protein seri 45.7 29 0.00063 30.7 3.8 13 111-123 36-48 (645)
90 PHA02825 LAP/PHD finger-like p 45.5 3.6 7.8E-05 29.8 -1.5 63 77-142 9-75 (162)
91 PF08792 A2L_zn_ribbon: A2L zi 45.4 18 0.00038 19.0 1.6 21 78-98 5-30 (33)
92 PLN02400 cellulose synthase 44.0 29 0.00063 32.5 3.6 48 10-60 34-88 (1085)
93 PHA02862 5L protein; Provision 43.8 2.9 6.2E-05 29.9 -2.1 62 78-142 4-69 (156)
94 PF06937 EURL: EURL protein; 41.7 13 0.00028 29.2 1.0 30 1-30 1-36 (285)
95 PF13913 zf-C2HC_2: zinc-finge 38.0 14 0.00031 17.9 0.5 14 23-36 1-14 (25)
96 COG2888 Predicted Zn-ribbon RN 37.9 15 0.00032 22.2 0.6 18 78-96 40-57 (61)
97 PF00301 Rubredoxin: Rubredoxi 37.6 28 0.0006 19.9 1.7 11 49-59 33-43 (47)
98 KOG1952|consensus 37.0 9.3 0.0002 34.7 -0.5 47 14-60 193-246 (950)
99 KOG4628|consensus 35.4 24 0.00053 28.8 1.6 45 77-126 230-277 (348)
100 PLN03208 E3 ubiquitin-protein 35.2 13 0.00027 27.9 -0.0 50 11-60 17-78 (193)
101 PLN02638 cellulose synthase A 34.8 30 0.00064 32.5 2.2 49 9-60 14-69 (1079)
102 PF14569 zf-UDP: Zinc-binding 33.6 5.2 0.00011 25.5 -1.9 49 9-60 6-61 (80)
103 PF00097 zf-C3HC4: Zinc finger 32.9 5.3 0.00012 21.4 -1.8 28 15-42 1-29 (41)
104 PRK03564 formate dehydrogenase 32.8 55 0.0012 26.3 3.3 27 11-37 186-225 (309)
105 PLN02436 cellulose synthase A 32.2 32 0.00069 32.2 2.0 48 10-60 34-88 (1094)
106 PF05502 Dynactin_p62: Dynacti 31.8 33 0.00071 29.2 1.9 9 98-106 27-35 (483)
107 COG5082 AIR1 Arginine methyltr 31.5 57 0.0012 24.4 2.9 16 10-25 58-73 (190)
108 PF13920 zf-C3HC4_3: Zinc fing 31.3 8.3 0.00018 21.8 -1.2 43 12-58 2-45 (50)
109 smart00154 ZnF_AN1 AN1-like Zi 31.2 41 0.00088 18.2 1.6 21 79-99 1-22 (39)
110 cd00350 rubredoxin_like Rubred 31.1 34 0.00073 17.7 1.3 9 115-123 16-24 (33)
111 smart00744 RINGv The RING-vari 30.4 9.5 0.00021 21.8 -1.1 41 79-122 2-48 (49)
112 PF05502 Dynactin_p62: Dynacti 30.0 48 0.001 28.3 2.6 32 23-59 4-35 (483)
113 PF04216 FdhE: Protein involve 29.6 26 0.00057 27.5 1.0 64 10-85 170-247 (290)
114 KOG4236|consensus 29.5 15 0.00032 32.2 -0.5 29 12-40 156-189 (888)
115 KOG1844|consensus 29.1 36 0.00079 28.7 1.8 37 88-126 100-136 (508)
116 COG5047 SEC23 Vesicle coat com 29.0 38 0.00083 29.8 1.9 32 88-124 52-84 (755)
117 TIGR01206 lysW lysine biosynth 28.9 48 0.001 19.5 1.8 28 14-41 4-39 (54)
118 TIGR01562 FdhE formate dehydro 28.8 86 0.0019 25.1 3.7 28 10-37 182-223 (305)
119 PF15227 zf-C3HC4_4: zinc fing 28.3 18 0.0004 19.8 -0.1 28 29-56 15-42 (42)
120 KOG1280|consensus 27.2 30 0.00065 28.3 0.9 9 24-32 8-16 (381)
121 TIGR00622 ssl1 transcription f 27.1 89 0.0019 21.3 3.1 24 24-47 25-48 (112)
122 cd00729 rubredoxin_SM Rubredox 27.1 54 0.0012 17.1 1.6 9 78-86 20-28 (34)
123 PF09416 UPF1_Zn_bind: RNA hel 26.9 21 0.00045 25.7 -0.0 23 79-101 3-26 (152)
124 PF14369 zf-RING_3: zinc-finge 26.8 61 0.0013 17.1 1.8 6 118-123 23-28 (35)
125 PRK14890 putative Zn-ribbon RN 26.7 57 0.0012 19.6 1.8 18 78-96 38-55 (59)
126 PF02591 DUF164: Putative zinc 26.1 52 0.0011 19.0 1.6 23 10-32 20-54 (56)
127 PF05715 zf-piccolo: Piccolo Z 25.8 38 0.00082 20.5 0.9 33 90-123 23-56 (61)
128 COG5540 RING-finger-containing 24.9 20 0.00044 28.8 -0.4 42 13-57 324-368 (374)
129 KOG2932|consensus 24.6 31 0.00067 27.9 0.5 38 76-124 90-131 (389)
130 PF03380 DUF282: Caenorhabditi 23.4 95 0.0021 17.0 2.2 16 92-107 2-17 (39)
131 PF13240 zinc_ribbon_2: zinc-r 22.9 59 0.0013 15.4 1.2 6 78-83 15-20 (23)
132 PF14787 zf-CCHC_5: GAG-polypr 22.7 44 0.00095 18.0 0.7 11 26-36 4-14 (36)
133 cd00730 rubredoxin Rubredoxin; 22.3 57 0.0012 18.8 1.2 11 49-59 33-43 (50)
134 KOG3268|consensus 21.7 27 0.0006 25.9 -0.2 21 24-44 182-204 (234)
135 KOG0827|consensus 20.4 20 0.00043 29.8 -1.3 45 12-57 4-52 (465)
136 KOG2626|consensus 20.3 80 0.0017 27.3 2.2 38 87-124 33-75 (544)
137 PF13923 zf-C3HC4_2: Zinc fing 20.2 21 0.00046 18.9 -0.8 27 15-41 1-28 (39)
No 1
>KOG1244|consensus
Probab=99.62 E-value=5.5e-17 Score=123.84 Aligned_cols=93 Identities=32% Similarity=0.887 Sum_probs=80.1
Q ss_pred cccccccccccc----------CceEecCCCCCcccccccCCCCCC---CCCCCeEeCccccCCCCCCCCCCCccccccc
Q psy14606 10 EHQDYCEVCQQG----------GEIILCDTCPRAYHLCCLDPELDE---TPEGKWSCPRCVSDGPPETASPPAEEVKEKE 76 (145)
Q Consensus 10 ~~~~~C~~C~~~----------g~l~~Cd~C~~~~H~~Cl~p~~~~---~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~ 76 (145)
....+|..|..+ .+||.|..|+|+=|.+||+...+. +....|+|..|+
T Consensus 222 ~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck------------------- 282 (336)
T KOG1244|consen 222 QPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK------------------- 282 (336)
T ss_pred cCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc-------------------
Confidence 445689999754 269999999999999999954332 455799999999
Q ss_pred ccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 77 VLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 77 ~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
+|++|+... +.||+||.|++.||.+||.|||. +.|+|.|-|..|.
T Consensus 283 -~csicgtsenddqllfcddcdrgyhmyclsppm~-eppegswsc~KOG 329 (336)
T KOG1244|consen 283 -YCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMV-EPPEGSWSCHLCL 329 (336)
T ss_pred -eeccccCcCCCceeEeecccCCceeeEecCCCcC-CCCCCchhHHHHH
Confidence 899999864 78999999999999999999999 9999999999986
No 2
>KOG0383|consensus
Probab=99.48 E-value=1.7e-14 Score=123.35 Aligned_cols=110 Identities=38% Similarity=0.828 Sum_probs=96.6
Q ss_pred CCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCcccccccccccccCCCCCCeecCCCCCCCCCCCCCCCCC
Q psy14606 29 TCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPI 108 (145)
Q Consensus 29 ~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~ 108 (145)
.|+|+||..|+.|.+..-++++|.|+.|.+.+.++.+.... .....+..|.+|+.+| ++|.|+.|+.+||.+|+++++
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~-~~~~~~e~c~ic~~~g-~~l~c~tC~~s~h~~cl~~pl 78 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDD-WDDAEQEACRICADGG-ELLWCDTCPASFHASCLGPPL 78 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCC-cchhhhhhhhhhcCCC-cEEEeccccHHHHHHccCCCC
Confidence 48999999999999998889999999999887776543222 3455677899999999 999999999999999999999
Q ss_pred CCCCCCCceeCCCCCCCCCCCchhhcccccccC
Q psy14606 109 EGELPTSGWKCPKCSCPPLPGKLEDMASLLRLP 141 (145)
Q Consensus 109 ~~~~p~~~w~C~~C~~~~~~~~~~~~~~~~~~~ 141 (145)
. ..|+++|+|+.|.++....++.+++.|+|..
T Consensus 79 ~-~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~ 110 (696)
T KOG0383|consen 79 T-PQPNGEFICPRCFCPKNAGKIEKILGWRWKP 110 (696)
T ss_pred C-cCCccceeeeeeccCCCcccccccceeEecC
Confidence 9 9999899999999999999999999999864
No 3
>KOG1512|consensus
Probab=99.27 E-value=1.4e-12 Score=100.62 Aligned_cols=88 Identities=24% Similarity=0.655 Sum_probs=74.0
Q ss_pred cccccccccccc---------CceEecCCCCCcccccccCCCCC---CCCCCCeEeCccccCCCCCCCCCCCcccccccc
Q psy14606 10 EHQDYCEVCQQG---------GEIILCDTCPRAYHLCCLDPELD---ETPEGKWSCPRCVSDGPPETASPPAEEVKEKEV 77 (145)
Q Consensus 10 ~~~~~C~~C~~~---------g~l~~Cd~C~~~~H~~Cl~p~~~---~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~ 77 (145)
....+|.+|-++ ..+|.|..|..++|.+|+.-+.. .+....|.|..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~-------------------- 315 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE-------------------- 315 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH--------------------
Confidence 344678899764 24999999999999999984332 2345799999999
Q ss_pred cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCC
Q psy14606 78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCP 120 (145)
Q Consensus 78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~ 120 (145)
.|.+|+.+- +++++||.|+++||..|++ +. .+|.|.|+|.
T Consensus 316 lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~-~lP~G~WICD 357 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQ-DLPRGEWICD 357 (381)
T ss_pred hhhccCCcccchheeccccccCCCCccccc--cc-cccCccchhh
Confidence 899999975 6899999999999999999 56 8999999998
No 4
>KOG4299|consensus
Probab=99.17 E-value=2.1e-11 Score=102.26 Aligned_cols=110 Identities=34% Similarity=0.848 Sum_probs=78.8
Q ss_pred ccccccccccCce---EecCCCCCcccccccCCCC--CCCCCCCeEeCccccCCCCCC--C----C--------------
Q psy14606 12 QDYCEVCQQGGEI---ILCDTCPRAYHLCCLDPEL--DETPEGKWSCPRCVSDGPPET--A----S-------------- 66 (145)
Q Consensus 12 ~~~C~~C~~~g~l---~~Cd~C~~~~H~~Cl~p~~--~~~p~~~W~C~~C~~~~~~~~--~----~-------------- 66 (145)
+++|..|.+.|.. ++||+|+++||+.||.||+ +.+|.|.|+|+.|......-. . .
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~~~~t~~~~~~~~~i~t~~~~~I 332 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINPKMETLSNRGTVVDIFTQFVSKI 332 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecccchhhhhhccchHHHHHHHHHhh
Confidence 4599999999876 9999999999999999995 568999999999975421000 0 0
Q ss_pred ---------------------------------------------CCC---cc--cccccccccccCCCC---CCeecCC
Q psy14606 67 ---------------------------------------------PPA---EE--VKEKEVLCAKCKSPG---DQFLLCE 93 (145)
Q Consensus 67 ---------------------------------------------~~~---~~--~~~~~~~C~vC~~~g---~~ll~C~ 93 (145)
+.+ .+ .+....+|+.|.... ..++.|+
T Consensus 333 Ds~np~q~~lPe~i~~~~~~v~~g~~~~~sd~~~~~pl~~~~~~~d~e~~e~g~~ssg~~~~~~~c~~~~~~s~~vl~c~ 412 (613)
T KOG4299|consen 333 DSHNPIQKILPENISESFGGVSRGDDGQYSDTQDEKPLDPPALILDGENDENGIDSSGTELLCGRCSKTQTESVVVLDCQ 412 (613)
T ss_pred hccchhhhhCCHHHHhhccccccCCCCccccccCCcCCChhhhcccccCCccCCCccCcchhhcccCcchhhhhhhhccc
Confidence 000 00 112344788888753 4578999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--ceeCCCCC
Q psy14606 94 TCNGSYHPHCLPDPIEGELPTS--GWKCPKCS 123 (145)
Q Consensus 94 ~C~~~yH~~Cl~~~~~~~~p~~--~w~C~~C~ 123 (145)
.|+..+|..|+. +.. ..|.. .|.|+...
T Consensus 413 ye~s~~h~dc~~-~~~-~~ps~ss~~k~p~~s 442 (613)
T KOG4299|consen 413 YEQSPEHPDCKD-DSK-ALPSLSSKWKCPRVS 442 (613)
T ss_pred cccCCCCccccc-hhh-hCCCCcccccCCCCC
Confidence 999999999994 434 44443 68999874
No 5
>KOG4299|consensus
Probab=99.16 E-value=1.7e-11 Score=102.90 Aligned_cols=50 Identities=32% Similarity=1.014 Sum_probs=42.8
Q ss_pred ccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCC-CCCCCceeCCCCCCCC
Q psy14606 77 VLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEG-ELPTSGWKCPKCSCPP 126 (145)
Q Consensus 77 ~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~-~~p~~~w~C~~C~~~~ 126 (145)
.||+.|+..| ..+|+||.|++.||+.||.||+.. ++|.+.|+|+.|..+.
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 3899999988 345999999999999999999432 8899999999996653
No 6
>KOG4443|consensus
Probab=99.12 E-value=1.3e-11 Score=103.99 Aligned_cols=92 Identities=34% Similarity=0.944 Sum_probs=78.5
Q ss_pred cccccccccccc-----CceEecCCCCCcccccccCCCCCCC-CCCCeEeCccccCCCCCCCCCCCcccccccccccccC
Q psy14606 10 EHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDET-PEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCK 83 (145)
Q Consensus 10 ~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~~-p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~ 83 (145)
....+|.+|+.. |.|+.|..|..-||.+|+...+... -.+.|.|+.|+ .|..|+
T Consensus 16 ~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr--------------------vCe~c~ 75 (694)
T KOG4443|consen 16 IVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR--------------------VCEACG 75 (694)
T ss_pred hhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce--------------------eeeecc
Confidence 455678888765 4599999999999999998655433 24569999999 899999
Q ss_pred CCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCC
Q psy14606 84 SPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122 (145)
Q Consensus 84 ~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C 122 (145)
..| ..+++|+.|+-+||.+|..|+.+ .++.+.|+|+.|
T Consensus 76 ~~gD~~kf~~Ck~cDvsyh~yc~~P~~~-~v~sg~~~ckk~ 115 (694)
T KOG4443|consen 76 TTGDPKKFLLCKRCDVSYHCYCQKPPND-KVPSGPWLCKKC 115 (694)
T ss_pred ccCCcccccccccccccccccccCCccc-cccCcccccHHH
Confidence 766 57899999999999999999999 999999999999
No 7
>KOG1244|consensus
Probab=99.00 E-value=1.2e-10 Score=89.31 Aligned_cols=53 Identities=40% Similarity=1.074 Sum_probs=47.2
Q ss_pred cccccccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606 6 DLQTEHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58 (145)
Q Consensus 6 ~~~~~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 58 (145)
++..++...|.||+-. ++||+||.|+|+||++||.|++...|+|.|.|..|..
T Consensus 275 rwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 275 RWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 4667788899999864 5799999999999999999999999999999998863
No 8
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.97 E-value=1.1e-09 Score=78.78 Aligned_cols=89 Identities=27% Similarity=0.799 Sum_probs=62.4
Q ss_pred ccccccc------cCceEecCCCCCcccccccCCCCCC------CCCCCe--EeCccccCCCCCCCCCCCcccccccccc
Q psy14606 14 YCEVCQQ------GGEIILCDTCPRAYHLCCLDPELDE------TPEGKW--SCPRCVSDGPPETASPPAEEVKEKEVLC 79 (145)
Q Consensus 14 ~C~~C~~------~g~l~~Cd~C~~~~H~~Cl~p~~~~------~p~~~W--~C~~C~~~~~~~~~~~~~~~~~~~~~~C 79 (145)
.|.+|.. .|.||+|.+|..+||..||++.... +..+.| +|.+|+-.... ..........|
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~k------KD~~aP~~~~C 74 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHK------KDPRAPHHGMC 74 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhc------ccCCCCCCCcc
Confidence 4778853 3679999999999999999987642 334444 88899743322 11233344456
Q ss_pred cccCCCC----------------------------------------CCeecCCCCCCCCCCCCCCCCC
Q psy14606 80 AKCKSPG----------------------------------------DQFLLCETCNGSYHPHCLPDPI 108 (145)
Q Consensus 80 ~vC~~~g----------------------------------------~~ll~C~~C~~~yH~~Cl~~~~ 108 (145)
..|+..| ..|+.|..|.++||+..|+++-
T Consensus 75 ~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 75 QQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred cccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 6666543 1488999999999999999863
No 9
>KOG0383|consensus
Probab=98.91 E-value=7.4e-10 Score=95.28 Aligned_cols=115 Identities=21% Similarity=0.483 Sum_probs=87.4
Q ss_pred ccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCC----------CCC-----C------
Q psy14606 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP----------ETA-----S------ 66 (145)
Q Consensus 8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~----------~~~-----~------ 66 (145)
...+...|.+|+++|++++|+.|+.+||.+|+++++...|.++|.|++|...... |.+ .
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~ 122 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGVI 122 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCcc
Confidence 3456678999999999999999999999999999999999988999999433210 100 0
Q ss_pred ---------------------------------------------CCCcccccccccccccCCCCCCeecCCCCCCCCCC
Q psy14606 67 ---------------------------------------------PPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHP 101 (145)
Q Consensus 67 ---------------------------------------------~~~~~~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~ 101 (145)
...........-+.++...+ .++.++.+++.||.
T Consensus 123 ~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~~a~~~~r~~~ 201 (696)
T KOG0383|consen 123 SPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPVELQRKHDTDQKPEAEIGVTRDKG-KLVPYADLEERFLL 201 (696)
T ss_pred CCcccccchhhhcccccccCCccchhHHHHHHhhhhcccchHhhhhhhhcccCccccccccccCc-cccccccchhhhhh
Confidence 00000112223455677777 78888889999999
Q ss_pred CCCCCCCCCCCCCCceeCCCCCC
Q psy14606 102 HCLPDPIEGELPTSGWKCPKCSC 124 (145)
Q Consensus 102 ~Cl~~~~~~~~p~~~w~C~~C~~ 124 (145)
+++.|... .++...|.+..+..
T Consensus 202 ~~iKpe~~-~i~rii~~~~s~~~ 223 (696)
T KOG0383|consen 202 YGIKPEWM-PIARIINRRSSQKG 223 (696)
T ss_pred eecccccc-ccchhhhhhccccc
Confidence 99999888 88888999998853
No 10
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.88 E-value=3.1e-10 Score=66.75 Aligned_cols=45 Identities=49% Similarity=1.228 Sum_probs=37.7
Q ss_pred ccccccc---cCceEecCCCCCcccccccCCCCC--CCCCCCeEeCcccc
Q psy14606 14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELD--ETPEGKWSCPRCVS 58 (145)
Q Consensus 14 ~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~--~~p~~~W~C~~C~~ 58 (145)
+|.+|++ +++||.|+.|++.||..|++++.. ..+.+.|+|+.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5788887 568999999999999999998877 34456999999863
No 11
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.78 E-value=1.3e-09 Score=89.55 Aligned_cols=99 Identities=27% Similarity=0.662 Sum_probs=73.1
Q ss_pred cccccccccccccccC-----ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCC----------C------
Q psy14606 7 LQTEHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET----------A------ 65 (145)
Q Consensus 7 ~~~~~~~~C~~C~~~g-----~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~----------~------ 65 (145)
.++.-++.|.+|.+.. -+++||+|+.+.|+.|++ +.-+|+|.|+|..|.....+.. +
T Consensus 188 ~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~d 265 (669)
T COG5141 188 PSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSD 265 (669)
T ss_pred CchhhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccccceeEEEeccCCCCceeeccC
Confidence 3445678899998753 399999999999999999 7789999999999976543211 0
Q ss_pred C----------------------CCCcc-----cccccccccccCCCCCCeecCC--CCCCCCCCCCCCCC
Q psy14606 66 S----------------------PPAEE-----VKEKEVLCAKCKSPGDQFLLCE--TCNGSYHPHCLPDP 107 (145)
Q Consensus 66 ~----------------------~~~~~-----~~~~~~~C~vC~~~g~~ll~C~--~C~~~yH~~Cl~~~ 107 (145)
+ +..++ .+.--..|.+|+..++.-|+|. .|-++||..|....
T Consensus 266 grW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArra 336 (669)
T COG5141 266 GRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRA 336 (669)
T ss_pred CchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhc
Confidence 0 01111 1111236999999766899998 79999999998765
No 12
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.77 E-value=5.1e-10 Score=65.86 Aligned_cols=46 Identities=33% Similarity=1.032 Sum_probs=35.8
Q ss_pred cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCC-CCCCCceeCCCCC
Q psy14606 78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEG-ELPTSGWKCPKCS 123 (145)
Q Consensus 78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~-~~p~~~w~C~~C~ 123 (145)
+|.+|+..+ +.||.|+.|.++||..|++++... ..+...|+|+.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 477787743 589999999999999999998541 2234599999885
No 14
>KOG4323|consensus
Probab=98.77 E-value=4e-09 Score=86.77 Aligned_cols=113 Identities=21% Similarity=0.444 Sum_probs=74.8
Q ss_pred ccccccccccc-----CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCC----CC-------------C
Q psy14606 11 HQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA----SP-------------P 68 (145)
Q Consensus 11 ~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~----~~-------------~ 68 (145)
.+..|.+|... .+++.|+.|.++||..|..|.... .+.|.+..|+........ .+ .
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l 159 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASL 159 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCc--CCccccccccccccccccccccccccccccccCccccc
Confidence 33457777653 368899999999999999865432 356667767765321110 00 0
Q ss_pred C-cccccccccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCC---CCCCCceeCCCCCCC
Q psy14606 69 A-EEVKEKEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEG---ELPTSGWKCPKCSCP 125 (145)
Q Consensus 69 ~-~~~~~~~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~---~~p~~~w~C~~C~~~ 125 (145)
+ .........|.||..++ ..||+|+.|..|||..|+.|+.+. ..+.+.|+|..|..+
T Consensus 160 ~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 160 DWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 0 00011122377777543 689999999999999999997442 457789999999743
No 15
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0955|consensus
Probab=98.73 E-value=8.8e-09 Score=91.91 Aligned_cols=116 Identities=25% Similarity=0.590 Sum_probs=82.2
Q ss_pred cccccccccccccc-----CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCC-------CC---------
Q psy14606 8 QTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET-------AS--------- 66 (145)
Q Consensus 8 ~~~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~-------~~--------- 66 (145)
....|++|.||.++ ..+|+||.|+.++|+.|++ +..+|+|.|+|..|........ +.
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dg 292 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDG 292 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCC
Confidence 34678899999986 3599999999999999999 6788999999999976543210 00
Q ss_pred --------------C------CCc---c----cccccccccccCCCC-CCeecCC--CCCCCCCCCCCCCC---CCC-CC
Q psy14606 67 --------------P------PAE---E----VKEKEVLCAKCKSPG-DQFLLCE--TCNGSYHPHCLPDP---IEG-EL 112 (145)
Q Consensus 67 --------------~------~~~---~----~~~~~~~C~vC~~~g-~~ll~C~--~C~~~yH~~Cl~~~---~~~-~~ 112 (145)
+ ++. . .......|++|+..+ ..-++|. .|-.|||.+|-... |.. .+
T Consensus 293 rw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~agl~m~~~~~ 372 (1051)
T KOG0955|consen 293 RWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRAGLYMKSNTV 372 (1051)
T ss_pred ceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhcCceEeeccc
Confidence 0 000 0 111245799999876 5789997 79999999997654 110 11
Q ss_pred C-----------CCceeCCCCCCC
Q psy14606 113 P-----------TSGWKCPKCSCP 125 (145)
Q Consensus 113 p-----------~~~w~C~~C~~~ 125 (145)
+ +..-+|..++.+
T Consensus 373 ~~~s~~~~s~~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 373 KELSKNGTSQSVNKISYCDKHTPP 396 (1051)
T ss_pred ccccccccccccceeeeccCCCCc
Confidence 1 346789999865
No 17
>KOG0956|consensus
Probab=98.69 E-value=5.2e-09 Score=88.91 Aligned_cols=93 Identities=25% Similarity=0.650 Sum_probs=67.4
Q ss_pred ccccccccc-----CceEecCC--CCCcccccccCCCCCCCCCCCeEeCccccCCCCCC-----------C--C------
Q psy14606 13 DYCEVCQQG-----GEIILCDT--CPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET-----------A--S------ 66 (145)
Q Consensus 13 ~~C~~C~~~-----g~l~~Cd~--C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~-----------~--~------ 66 (145)
.-|-||.|. .-||+||+ |..+.|+.|++ +.++|.|.|||..|++..-... + +
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GW 83 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGW 83 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCc
Confidence 458999985 25999995 99999999999 8899999999999976421110 0 0
Q ss_pred ------------------CCCc------ccccccccccccCCCC-------CCeecCC--CCCCCCCCCCCCCC
Q psy14606 67 ------------------PPAE------EVKEKEVLCAKCKSPG-------DQFLLCE--TCNGSYHPHCLPDP 107 (145)
Q Consensus 67 ------------------~~~~------~~~~~~~~C~vC~~~g-------~~ll~C~--~C~~~yH~~Cl~~~ 107 (145)
.||- ..+.....|++|.+.| ..-|.|. .|.++||+.|-+-.
T Consensus 84 AHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~ 157 (900)
T KOG0956|consen 84 AHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRA 157 (900)
T ss_pred eEEEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhh
Confidence 1111 1223345799999976 2357887 69999999998754
No 18
>KOG0825|consensus
Probab=98.61 E-value=1.4e-08 Score=87.44 Aligned_cols=47 Identities=43% Similarity=0.987 Sum_probs=42.8
Q ss_pred cccccccCCCC--CCeecCCCCCCC-CCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 76 EVLCAKCKSPG--DQFLLCETCNGS-YHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 76 ~~~C~vC~~~g--~~ll~C~~C~~~-yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
...|.+|...+ +.||+|+.|..+ ||.+||+|++. ++|-+.|+|++|.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~-eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLS-ESPVNEWYCTNCS 264 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccc-cccccceecCcch
Confidence 45799999877 679999999987 99999999999 9999999999994
No 19
>KOG1473|consensus
Probab=98.50 E-value=1.1e-08 Score=90.75 Aligned_cols=119 Identities=22% Similarity=0.375 Sum_probs=91.1
Q ss_pred ccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCC-----------------CCC-
Q psy14606 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS-----------------PPA- 69 (145)
Q Consensus 8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~-----------------~~~- 69 (145)
+..-++.|.+|.+.|++++|..|++.||..|+.++...+|+..|.|.-|.......... |..
T Consensus 340 ~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr 419 (1414)
T KOG1473|consen 340 EIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDR 419 (1414)
T ss_pred ceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCc
Confidence 34567899999999999999999999999999999999999999999998665443221 111
Q ss_pred --cccccccccccccCCCCCCeecCCC-CCCCCCC-CCCCCCC-CCCCCCCceeCCCCCCCCC
Q psy14606 70 --EEVKEKEVLCAKCKSPGDQFLLCET-CNGSYHP-HCLPDPI-EGELPTSGWKCPKCSCPPL 127 (145)
Q Consensus 70 --~~~~~~~~~C~vC~~~g~~ll~C~~-C~~~yH~-~Cl~~~~-~~~~p~~~w~C~~C~~~~~ 127 (145)
..-....-.|.+|+..+ .++.|.. |+++||. .||+... ...++.+.|+|+.|.-..+
T Consensus 420 ~gr~ywfi~rrl~Ie~~de-t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM 481 (1414)
T KOG1473|consen 420 YGRKYWFISRRLRIEGMDE-TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQM 481 (1414)
T ss_pred cccchhceeeeeEEecCCC-cEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhc
Confidence 11122334688999877 7888885 9999998 9999442 1167889999999954433
No 20
>KOG0825|consensus
Probab=98.44 E-value=8.5e-08 Score=82.78 Aligned_cols=48 Identities=38% Similarity=1.041 Sum_probs=42.7
Q ss_pred cccccccccC---ceEecCCCCCc-ccccccCCCCCCCCCCCeEeCccccCC
Q psy14606 13 DYCEVCQQGG---EIILCDTCPRA-YHLCCLDPELDETPEGKWSCPRCVSDG 60 (145)
Q Consensus 13 ~~C~~C~~~g---~l~~Cd~C~~~-~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 60 (145)
-.|.||.... -||+||.|+.+ ||.+||+|++.++|.+.|||..|.-..
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 3599998754 49999999999 999999999999999999999997654
No 21
>KOG1973|consensus
Probab=98.42 E-value=1.4e-07 Score=73.87 Aligned_cols=41 Identities=29% Similarity=0.904 Sum_probs=34.5
Q ss_pred cccccCCCCCCeecCCC--CC-CCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 78 LCAKCKSPGDQFLLCET--CN-GSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 78 ~C~vC~~~g~~ll~C~~--C~-~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
+|. +..+| .||.||. |+ .|||+.|++ |. ..|.+.|+|+.|.
T Consensus 223 ~Cn-qvsyg-~Mi~CDn~~C~~eWFH~~CVG--L~-~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 223 ICN-QVSYG-KMIGCDNPGCPIEWFHFTCVG--LK-TKPKGKWYCPRCK 266 (274)
T ss_pred Eec-ccccc-cccccCCCCCCcceEEEeccc--cc-cCCCCcccchhhh
Confidence 344 45566 9999996 99 999999999 55 7799999999996
No 22
>KOG1512|consensus
Probab=98.32 E-value=1.8e-07 Score=72.66 Aligned_cols=50 Identities=32% Similarity=0.901 Sum_probs=41.9
Q ss_pred cccccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeC-ccccC
Q psy14606 8 QTEHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCP-RCVSD 59 (145)
Q Consensus 8 ~~~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~-~C~~~ 59 (145)
.......|.||++. .++++||.|+|+||++|++ +..+|.|.|.|. .|...
T Consensus 310 ~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 310 KCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA 363 (381)
T ss_pred hhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence 34455678899874 6899999999999999999 889999999998 56543
No 23
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.26 E-value=5e-07 Score=69.01 Aligned_cols=46 Identities=30% Similarity=0.954 Sum_probs=38.1
Q ss_pred cccccccccCCCC-CCeecCC--CCCC-CCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 74 EKEVLCAKCKSPG-DQFLLCE--TCNG-SYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 74 ~~~~~C~vC~~~g-~~ll~C~--~C~~-~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
....+|+ |.... +.||.|| .|.+ |||+.|++ +. ++|+|.|+|+.|.
T Consensus 219 ~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk-~pPKG~WYC~eCk 268 (271)
T COG5034 219 GEELYCF-CQQVSYGQMVACDNANCKREWFHLECVG--LK-EPPKGKWYCPECK 268 (271)
T ss_pred CceeEEE-ecccccccceecCCCCCchhheeccccc--cC-CCCCCcEeCHHhH
Confidence 3456898 88743 4999999 6884 99999999 56 8899999999994
No 24
>KOG4443|consensus
Probab=98.26 E-value=2.9e-07 Score=78.12 Aligned_cols=116 Identities=22% Similarity=0.484 Sum_probs=80.3
Q ss_pred ccccccccccccC---ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCC-CC---------CCCccccccc
Q psy14606 10 EHQDYCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET-AS---------PPAEEVKEKE 76 (145)
Q Consensus 10 ~~~~~C~~C~~~g---~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~-~~---------~~~~~~~~~~ 76 (145)
-..-.|..|+.+| .+++|+.|+.+||.+|+.|+...++.+.|+|+.|..+..... .. +...-...+.
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~ 145 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASL 145 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCccccccccc
Confidence 3344667777554 699999999999999999999999999999998876643221 11 1222223345
Q ss_pred ccccccCCCC-----CCeecCCCCCCCCCCCCCCCCCCCC---CCCCceeCCCCCCC
Q psy14606 77 VLCAKCKSPG-----DQFLLCETCNGSYHPHCLPDPIEGE---LPTSGWKCPKCSCP 125 (145)
Q Consensus 77 ~~C~vC~~~g-----~~ll~C~~C~~~yH~~Cl~~~~~~~---~p~~~w~C~~C~~~ 125 (145)
.+|.+|..-- ..++.|+.|.+|-|-.|........ .-...+.|..|++.
T Consensus 146 ~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR~e 202 (694)
T KOG4443|consen 146 SYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCRGE 202 (694)
T ss_pred ccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceeehh
Confidence 6777777622 2358999999999999987542100 01147999999754
No 25
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.20 E-value=7.8e-07 Score=63.27 Aligned_cols=29 Identities=52% Similarity=1.316 Sum_probs=26.5
Q ss_pred cccccccCCCCCCCCCCCeEeCccccCCC
Q psy14606 33 AYHLCCLDPELDETPEGKWSCPRCVSDGP 61 (145)
Q Consensus 33 ~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~ 61 (145)
+||++||+|+++.+|+|+|+|+.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 69999999999999999999999987643
No 26
>KOG0954|consensus
Probab=98.15 E-value=1.1e-06 Score=75.51 Aligned_cols=77 Identities=29% Similarity=0.695 Sum_probs=59.0
Q ss_pred cccccccccccc-----CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCcccccccccccccCC
Q psy14606 10 EHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKS 84 (145)
Q Consensus 10 ~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 84 (145)
.++-+|.+|..+ .+||+||.|+.-.|+.|++ +..+|.+.|+|..|.-.... .|..|-+
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg~~p---------------pCvLCPk 331 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALGIEP---------------PCVLCPK 331 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhccccCCC---------------Ceeeccc
Confidence 467789999875 3799999999999999999 88999999999999854222 5888887
Q ss_pred CCCCeecCCC-CCCCCCCCCC
Q psy14606 85 PGDQFLLCET-CNGSYHPHCL 104 (145)
Q Consensus 85 ~g~~ll~C~~-C~~~yH~~Cl 104 (145)
.| ..|.=.. =.+|-|..|-
T Consensus 332 kG-GamK~~~sgT~wAHvsCA 351 (893)
T KOG0954|consen 332 KG-GAMKPTKSGTKWAHVSCA 351 (893)
T ss_pred cC-CcccccCCCCeeeEeeee
Confidence 66 2222222 2268888874
No 27
>KOG1973|consensus
Probab=98.03 E-value=2.5e-06 Score=66.77 Aligned_cols=46 Identities=41% Similarity=1.090 Sum_probs=38.3
Q ss_pred ccccc-ccccCceEecCC--CC-CcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606 13 DYCEV-CQQGGEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (145)
Q Consensus 13 ~~C~~-C~~~g~l~~Cd~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 60 (145)
.+|.. +...|+||-||. |+ .-||+.|++ |...|.|.|||+.|+...
T Consensus 220 ~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred EEEEecccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 34443 556799999997 99 899999999 889999999999998543
No 28
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.01 E-value=3.7e-06 Score=64.35 Aligned_cols=45 Identities=49% Similarity=1.202 Sum_probs=37.7
Q ss_pred ccccccccccc--CceEecCC--CCC-cccccccCCCCCCCCCCCeEeCcccc
Q psy14606 11 HQDYCEVCQQG--GEIILCDT--CPR-AYHLCCLDPELDETPEGKWSCPRCVS 58 (145)
Q Consensus 11 ~~~~C~~C~~~--g~l~~Cd~--C~~-~~H~~Cl~p~~~~~p~~~W~C~~C~~ 58 (145)
+.-+|+ |.+. |+||-||+ |.+ -||+.|++ +...|+|.|||+.|+.
T Consensus 220 e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 220 EELYCF-CQQVSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred ceeEEE-ecccccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 344554 6664 89999994 988 89999999 8899999999999974
No 29
>KOG0957|consensus
Probab=97.83 E-value=8.2e-06 Score=67.82 Aligned_cols=45 Identities=38% Similarity=1.001 Sum_probs=39.2
Q ss_pred ccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCC----CceeCCCC
Q psy14606 77 VLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPT----SGWKCPKC 122 (145)
Q Consensus 77 ~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~----~~w~C~~C 122 (145)
..|.+|++.- ..+++||+|...||+.||.||++ .+|+ ..|.|..|
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLT-R~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLT-RLPKKNKNFGWQCSEC 595 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccCCccc-cCcccccCcceeeccc
Confidence 3699999865 34899999999999999999999 7775 47999999
No 30
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=97.80 E-value=4.9e-06 Score=45.50 Aligned_cols=34 Identities=38% Similarity=1.084 Sum_probs=19.6
Q ss_pred CceEecCCCCCcccccccCCCCCCCCCC-CeEeCccc
Q psy14606 22 GEIILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCV 57 (145)
Q Consensus 22 g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~ 57 (145)
..|+.|++|..++|..|++ +..++.+ .|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4689999999999999999 5566665 79998874
No 31
>KOG0957|consensus
Probab=97.76 E-value=9.9e-06 Score=67.35 Aligned_cols=44 Identities=39% Similarity=1.010 Sum_probs=38.9
Q ss_pred ccccccccC---ceEecCCCCCcccccccCCCCCCCCCC----CeEeCccc
Q psy14606 14 YCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEG----KWSCPRCV 57 (145)
Q Consensus 14 ~C~~C~~~g---~l~~Cd~C~~~~H~~Cl~p~~~~~p~~----~W~C~~C~ 57 (145)
.|.||++.- -|+.||.|...||+.||.||++..|+. .|+|..|-
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 599999864 389999999999999999999998863 79999994
No 32
>KOG1245|consensus
Probab=97.31 E-value=4.1e-05 Score=71.08 Aligned_cols=51 Identities=37% Similarity=1.054 Sum_probs=45.5
Q ss_pred ccccccccccccC---ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606 10 EHQDYCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (145)
Q Consensus 10 ~~~~~C~~C~~~g---~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 60 (145)
.....|.+|...+ +++.|+.|..+||.+|+.|.+..+|.++|+|+.|++..
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4566899998754 58999999999999999999999999999999998764
No 33
>KOG1245|consensus
Probab=97.24 E-value=4.8e-05 Score=70.65 Aligned_cols=63 Identities=24% Similarity=0.738 Sum_probs=49.6
Q ss_pred ccccccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCCCchhhcccccc
Q psy14606 73 KEKEVLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLR 139 (145)
Q Consensus 73 ~~~~~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~~~~~~~~~~~~ 139 (145)
+.....|.+|...+ ..|+.|+.|.++||..|+.|.+. ++|.++|+|+.|+.. ...++++.|+.
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~-~~~~~dW~C~~c~~e---~~~rr~~~~~~ 1169 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALS-SVPPGDWMCPSCRKE---HRARRQKRFRK 1169 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhc-cCCcCCccCCccchh---hhhhhhhhhhc
Confidence 34455899999866 47999999999999999999999 999999999999622 12444455543
No 34
>KOG4323|consensus
Probab=97.01 E-value=0.00037 Score=57.91 Aligned_cols=47 Identities=34% Similarity=0.890 Sum_probs=39.3
Q ss_pred ccccccccC-----ceEecCCCCCcccccccCCCCCC----CCCCCeEeCccccCC
Q psy14606 14 YCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDE----TPEGKWSCPRCVSDG 60 (145)
Q Consensus 14 ~C~~C~~~g-----~l~~Cd~C~~~~H~~Cl~p~~~~----~p~~~W~C~~C~~~~ 60 (145)
.|.+|..++ +||.|+.|..-||+.|..|.+.. .+...|+|..|....
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 499998653 79999999999999999998764 356799999997653
No 35
>KOG0955|consensus
Probab=96.95 E-value=0.0005 Score=62.19 Aligned_cols=45 Identities=27% Similarity=0.829 Sum_probs=39.2
Q ss_pred cccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 76 EVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 76 ~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
..+|.+|.+.. +..|+||.|+.++|.+|.+.+ -+|++.|+|..|.
T Consensus 219 D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~---~ipeg~WlCr~Cl 267 (1051)
T KOG0955|consen 219 DAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP---FIPEGQWLCRRCL 267 (1051)
T ss_pred CccceeecccccCCCceEEEcCCCcchhhhhccCCC---CCCCCcEeehhhc
Confidence 45899999865 468999999999999999943 7799999999996
No 36
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=96.50 E-value=0.0025 Score=42.89 Aligned_cols=84 Identities=17% Similarity=0.407 Sum_probs=47.3
Q ss_pred ccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCc-ccccccccccccCCCCCCeecC
Q psy14606 14 YCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAE-EVKEKEVLCAKCKSPGDQFLLC 92 (145)
Q Consensus 14 ~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~-~~~~~~~~C~vC~~~g~~ll~C 92 (145)
.|.+|...|.++.-..-++-.|..|+.- ...+ .+.-. ....+-+.+. ..+.....|.+|+..+...++|
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~-~~~~---~~~~~------~~~~~v~~~~i~~~~~~~~C~iC~~~~G~~i~C 71 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALW-IPEV---IFNNG------ESMEPVDISNIPPSRFKLKCSICGKSGGACIKC 71 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccce-eCcc---EEeec------hhcCcccceeecchhcCCcCcCCCCCCceeEEc
Confidence 4778877655544444566777777762 1111 00000 0000000000 1112345799999965489999
Q ss_pred CC--CCCCCCCCCCCCC
Q psy14606 93 ET--CNGSYHPHCLPDP 107 (145)
Q Consensus 93 ~~--C~~~yH~~Cl~~~ 107 (145)
.. |.++||+.|....
T Consensus 72 ~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 72 SHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCCCCCcCCCHHHHHHC
Confidence 97 9999999997653
No 37
>KOG0954|consensus
Probab=96.43 E-value=0.001 Score=57.81 Aligned_cols=46 Identities=35% Similarity=1.016 Sum_probs=40.6
Q ss_pred ccccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 75 KEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 75 ~~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
...+|.||..++ .+|++|+.|.-..|..|.+ +. ++|.+.|+|..|.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Il-e~p~gpWlCr~Ca 319 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--IL-EVPEGPWLCRTCA 319 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--ee-ecCCCCeeehhcc
Confidence 456899999984 6899999999999999998 45 8999999999993
No 38
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.85 E-value=0.00024 Score=38.79 Aligned_cols=32 Identities=34% Similarity=1.021 Sum_probs=18.2
Q ss_pred CeecCCCCCCCCCCCCCCCCCCCCCCCC-ceeCCCC
Q psy14606 88 QFLLCETCNGSYHPHCLPDPIEGELPTS-GWKCPKC 122 (145)
Q Consensus 88 ~ll~C~~C~~~yH~~Cl~~~~~~~~p~~-~w~C~~C 122 (145)
.||.|+.|.-++|..|.+.. .++.+ .|+|..|
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~---~~~~~~~W~C~~C 35 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVS---EVPDGDDWLCDRC 35 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-S---S--SS-----HHH
T ss_pred ceEEeCCCCCcCChhhCCcc---cCCCCCcEECCcC
Confidence 68999999999999999964 44554 7999766
No 39
>KOG1473|consensus
Probab=95.48 E-value=0.0083 Score=54.58 Aligned_cols=57 Identities=30% Similarity=0.646 Sum_probs=48.0
Q ss_pred cccccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCC
Q psy14606 70 EEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLP 128 (145)
Q Consensus 70 ~~~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~ 128 (145)
++.......|.+|.+.| .++.|..|++.||..|+.+|+. ++|...|-|-.|.-...+
T Consensus 338 e~~~~~ddhcrf~~d~~-~~lc~Et~prvvhlEcv~hP~~-~~~s~~~e~evc~~hkvn 394 (1414)
T KOG1473|consen 338 EGEIEYDDHCRFCHDLG-DLLCCETCPRVVHLECVFHPRF-AVPSAFWECEVCNIHKVN 394 (1414)
T ss_pred ccceeecccccccCccc-ceeecccCCceEEeeecCCccc-cCCCccchhhhhhhhccC
Confidence 34445556899999998 8999999999999999999999 999999999999644433
No 40
>KOG0956|consensus
Probab=95.39 E-value=0.0048 Score=53.52 Aligned_cols=45 Identities=31% Similarity=0.884 Sum_probs=37.5
Q ss_pred cccccCCC-C---CCeecCC--CCCCCCCCCCCCCCCCCCCCCCceeCCCCCCC
Q psy14606 78 LCAKCKSP-G---DQFLLCE--TCNGSYHPHCLPDPIEGELPTSGWKCPKCSCP 125 (145)
Q Consensus 78 ~C~vC~~~-g---~~ll~C~--~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~ 125 (145)
-|-||.+. | ..||.|| .|.-++|..|.+ +. .+|.+.|||..|...
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--Iv-qVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IV-QVPTGPWFCRKCESQ 57 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eE-ecCCCchhhhhhhhh
Confidence 57788773 3 4699999 799999999999 45 899999999999543
No 41
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.13 E-value=0.0071 Score=50.68 Aligned_cols=45 Identities=31% Similarity=0.793 Sum_probs=37.9
Q ss_pred cccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 76 EVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 76 ~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
...|.+|.+.. ..+++|+.|+-+.|..|.+.+ -+|+|.|+|..|.
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~---f~peG~WlCrkCi 241 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ---FLPEGFWLCRKCI 241 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhcccce---ecCcchhhhhhhc
Confidence 45788888754 358999999999999999965 7799999999994
No 42
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=94.68 E-value=0.016 Score=42.15 Aligned_cols=45 Identities=27% Similarity=0.760 Sum_probs=30.9
Q ss_pred ccccCCCC-----CCeecCCCCCCCCCCCCCCCCCC-----CCCCCC--ceeCCCCC
Q psy14606 79 CAKCKSPG-----DQFLLCETCNGSYHPHCLPDPIE-----GELPTS--GWKCPKCS 123 (145)
Q Consensus 79 C~vC~~~g-----~~ll~C~~C~~~yH~~Cl~~~~~-----~~~p~~--~w~C~~C~ 123 (145)
|.+|+..| ..||.|..|..+||..||++... +.+..+ ...|..|.
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Ci 58 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCI 58 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhc
Confidence 66775422 37999999999999999998621 133333 34577764
No 43
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.61 E-value=0.019 Score=34.00 Aligned_cols=30 Identities=33% Similarity=0.888 Sum_probs=25.9
Q ss_pred ccccccccc----cCceEecCCCCCcccccccCC
Q psy14606 12 QDYCEVCQQ----GGEIILCDTCPRAYHLCCLDP 41 (145)
Q Consensus 12 ~~~C~~C~~----~g~l~~Cd~C~~~~H~~Cl~p 41 (145)
...|.+|++ +++++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 347999986 578999999999999999964
No 44
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=92.77 E-value=0.034 Score=35.84 Aligned_cols=31 Identities=29% Similarity=0.776 Sum_probs=26.7
Q ss_pred cccccccCCC-CCCeecCC--CCCCCCCCCCCCCC
Q psy14606 76 EVLCAKCKSP-GDQFLLCE--TCNGSYHPHCLPDP 107 (145)
Q Consensus 76 ~~~C~vC~~~-g~~ll~C~--~C~~~yH~~Cl~~~ 107 (145)
...|.+|++. | ..|.|. .|.+.||+.|....
T Consensus 36 ~~~C~~C~~~~G-a~i~C~~~~C~~~fH~~CA~~~ 69 (90)
T PF13771_consen 36 KLKCSICKKKGG-ACIGCSHPGCSRSFHVPCARKA 69 (90)
T ss_pred CCCCcCCCCCCC-eEEEEeCCCCCcEEChHHHccC
Confidence 3479999998 7 899998 59999999998764
No 45
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=92.65 E-value=0.092 Score=39.37 Aligned_cols=36 Identities=33% Similarity=1.023 Sum_probs=29.5
Q ss_pred cccccCCCC-------CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 78 LCAKCKSPG-------DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 78 ~C~vC~~~g-------~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
+|.+|++.+ +..+.|..|...||..|... . .||.|.
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~--------~CpkC~ 196 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--K--------SCPKCA 196 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--C--------CCCCcH
Confidence 688898755 47899999999999999883 2 199885
No 46
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=92.62 E-value=0.035 Score=36.02 Aligned_cols=48 Identities=25% Similarity=0.722 Sum_probs=33.2
Q ss_pred cccccccccccc-----------Cc---eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606 10 EHQDYCEVCQQG-----------GE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (145)
Q Consensus 10 ~~~~~C~~C~~~-----------g~---l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 59 (145)
.+|+.|.||+.. |+ |++.. |...||..|+...++.- ...-.||-|+..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 457888888752 22 55444 99999999998766543 234588888753
No 47
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.39 E-value=0.084 Score=31.30 Aligned_cols=30 Identities=30% Similarity=0.916 Sum_probs=25.2
Q ss_pred ccccccCCC---CCCeecCCCCCCCCCCCCCCC
Q psy14606 77 VLCAKCKSP---GDQFLLCETCNGSYHPHCLPD 106 (145)
Q Consensus 77 ~~C~vC~~~---g~~ll~C~~C~~~yH~~Cl~~ 106 (145)
..|.+|++. +++++.|..|..-||..|-..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 469999983 468999999999999999754
No 48
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=91.74 E-value=0.015 Score=32.55 Aligned_cols=41 Identities=32% Similarity=0.759 Sum_probs=25.8
Q ss_pred ccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606 13 DYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (145)
Q Consensus 13 ~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 57 (145)
+.|.||.++ ++.+.--.|+..||..|+...+... ..||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 468888863 3333333499999999998655432 2677663
No 49
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.28 E-value=0.026 Score=35.24 Aligned_cols=47 Identities=30% Similarity=0.636 Sum_probs=19.1
Q ss_pred cccccccccc----Cc--eEecC--CCCCcccccccCCCCCCCC-------CCCeEeCcccc
Q psy14606 12 QDYCEVCQQG----GE--IILCD--TCPRAYHLCCLDPELDETP-------EGKWSCPRCVS 58 (145)
Q Consensus 12 ~~~C~~C~~~----g~--l~~Cd--~C~~~~H~~Cl~p~~~~~p-------~~~W~C~~C~~ 58 (145)
+..|.||.+. ++ .+.|+ .|...||..||.-.+...+ .-...||.|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 3578899753 32 48898 8999999999985443211 12457888864
No 50
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=90.51 E-value=0.13 Score=33.10 Aligned_cols=30 Identities=30% Similarity=0.850 Sum_probs=26.3
Q ss_pred cccccccccc-CceEecC--CCCCcccccccCC
Q psy14606 12 QDYCEVCQQG-GEIILCD--TCPRAYHLCCLDP 41 (145)
Q Consensus 12 ~~~C~~C~~~-g~l~~Cd--~C~~~~H~~Cl~p 41 (145)
...|.+|+.. |-.+-|. +|.+.||..|+.-
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 3579999998 9899998 5999999999973
No 51
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=90.43 E-value=0.13 Score=34.50 Aligned_cols=31 Identities=32% Similarity=0.855 Sum_probs=26.7
Q ss_pred cccccccccc-cCceEecCC--CCCcccccccCC
Q psy14606 11 HQDYCEVCQQ-GGEIILCDT--CPRAYHLCCLDP 41 (145)
Q Consensus 11 ~~~~C~~C~~-~g~l~~Cd~--C~~~~H~~Cl~p 41 (145)
....|.+|++ .|-++.|.. |..+||..|+..
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 3568999998 588999997 999999999973
No 52
>KOG4628|consensus
Probab=86.50 E-value=0.41 Score=38.85 Aligned_cols=44 Identities=34% Similarity=0.859 Sum_probs=33.8
Q ss_pred ccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606 13 DYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (145)
Q Consensus 13 ~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 59 (145)
+.|.||.++ |+.|.==-|...||..|++|.+.+. .-+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 589999874 6654446699999999999988765 3468888754
No 53
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=83.06 E-value=0.33 Score=30.35 Aligned_cols=43 Identities=28% Similarity=0.767 Sum_probs=26.7
Q ss_pred ccccccccccc-----------C-c-eEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606 11 HQDYCEVCQQG-----------G-E-IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (145)
Q Consensus 11 ~~~~C~~C~~~-----------g-~-l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 57 (145)
.++.|.||... + + .+.=..|+..||..|+...+... ..||.|+
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 45569999853 1 1 22224699999999998554432 3677764
No 54
>KOG1246|consensus
Probab=82.82 E-value=0.97 Score=41.12 Aligned_cols=48 Identities=42% Similarity=1.223 Sum_probs=40.8
Q ss_pred ccccccccccCc--eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606 12 QDYCEVCQQGGE--IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (145)
Q Consensus 12 ~~~C~~C~~~g~--l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 59 (145)
...|..|.++.+ ++.|++|...||..|..+++..++++.|.|+.|...
T Consensus 155 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 155 YPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred chhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 346888887652 339999999999999999999999999999999765
No 55
>KOG1081|consensus
Probab=81.13 E-value=1.2 Score=37.70 Aligned_cols=49 Identities=22% Similarity=0.465 Sum_probs=36.6
Q ss_pred ccccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606 6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (145)
Q Consensus 6 ~~~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 57 (145)
..+..+.+.|++|.++|+++.|+.+..++|..|... ..+...|.+..++
T Consensus 83 ~~~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~---~~~~c~~~~~d~~ 131 (463)
T KOG1081|consen 83 RHPKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA---QLEKCSKRCTDCR 131 (463)
T ss_pred hccCCCcchhccccCCCccceeccccccccccCcCc---cCcccccCCccee
Confidence 344567789999999999999998888888888752 3445556655554
No 56
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=80.26 E-value=1.5 Score=36.73 Aligned_cols=55 Identities=18% Similarity=0.566 Sum_probs=36.5
Q ss_pred cccccCCCC-----CCeecCCCCCCCCCCCCCCCC--------CCCC--CCCCceeCCCCCCCCCCCchhhccccc
Q psy14606 78 LCAKCKSPG-----DQFLLCETCNGSYHPHCLPDP--------IEGE--LPTSGWKCPKCSCPPLPGKLEDMASLL 138 (145)
Q Consensus 78 ~C~vC~~~g-----~~ll~C~~C~~~yH~~Cl~~~--------~~~~--~p~~~w~C~~C~~~~~~~~~~~~~~~~ 138 (145)
.|.+|.+.+ -..|.|+.|+-|-|..|--.. ..+. ..+..|+|..|. +...++.|+
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~------~~seLlG~v 199 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACG------KTSELLGFV 199 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCC------ChhhHHHHH
Confidence 388898754 248999999999999995332 1101 124479999995 444455554
No 57
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=80.09 E-value=1.3 Score=33.22 Aligned_cols=37 Identities=30% Similarity=0.903 Sum_probs=28.3
Q ss_pred ccccccccccC--------ceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606 12 QDYCEVCQQGG--------EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (145)
Q Consensus 12 ~~~C~~C~~~g--------~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 57 (145)
..+|.+|.+++ ..+.|..|...||..|... -.||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcH
Confidence 45788887642 5789999999999999982 1288875
No 58
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=77.61 E-value=2 Score=24.65 Aligned_cols=31 Identities=29% Similarity=0.634 Sum_probs=24.3
Q ss_pred cccccccccccc-----CceEecCCCCCcccccccC
Q psy14606 10 EHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLD 40 (145)
Q Consensus 10 ~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~ 40 (145)
.....|.+|++. .+-+.|..|...+|..|+.
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 455689999872 5789999999999999997
No 59
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=77.11 E-value=0.56 Score=25.12 Aligned_cols=40 Identities=30% Similarity=0.712 Sum_probs=26.0
Q ss_pred cccccccC-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606 15 CEVCQQGG-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (145)
Q Consensus 15 C~~C~~~g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 57 (145)
|.+|.+.- +.+.-..|+..||..|+...+.. +...||.|+
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCR 42 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCC
Confidence 67777653 44444569999999999754332 345577665
No 60
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=77.08 E-value=1 Score=30.28 Aligned_cols=30 Identities=37% Similarity=0.946 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCCCCC----CCCCCceeCCCCC
Q psy14606 94 TCNGSYHPHCLPDPIEG----ELPTSGWKCPKCS 123 (145)
Q Consensus 94 ~C~~~yH~~Cl~~~~~~----~~p~~~w~C~~C~ 123 (145)
.+...|-..||...... .+....|.||.|.
T Consensus 35 ~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Cr 68 (105)
T PF10497_consen 35 GCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCR 68 (105)
T ss_pred cCcceehHhHHHHHHhhhHHHHhcCCceECCCCC
Confidence 33788888888765431 1235689999995
No 61
>KOG1246|consensus
Probab=76.35 E-value=2.6 Score=38.44 Aligned_cols=47 Identities=38% Similarity=1.097 Sum_probs=38.9
Q ss_pred ccccccCCCCC-CeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606 77 VLCAKCKSPGD-QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC 124 (145)
Q Consensus 77 ~~C~vC~~~g~-~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~ 124 (145)
..|..|.++.. .++.|+.|.+.||..|+.++++ .++++.|.|+.|..
T Consensus 156 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 203 (904)
T KOG1246|consen 156 PQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLT-RVPDGDWRCPKCIP 203 (904)
T ss_pred hhhhccccCCCccceecccccCcccccccCCCCC-cCCcCcccCCcccc
Confidence 45777777551 2339999999999999999999 99999999999953
No 62
>KOG3612|consensus
Probab=76.25 E-value=2.4 Score=36.30 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=40.9
Q ss_pred ccccccccccccCceEecCCCCCcccccccCCCCCCC-CCCCeEeCccccCC
Q psy14606 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDET-PEGKWSCPRCVSDG 60 (145)
Q Consensus 10 ~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~-p~~~W~C~~C~~~~ 60 (145)
..+-+|+.|.-.|..+.|+.|.|+||..|+.|..... .+..|.++.+.+..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccccC
Confidence 4456899999999999999999999999999765433 23578888887654
No 63
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=75.80 E-value=0.62 Score=30.23 Aligned_cols=44 Identities=34% Similarity=0.823 Sum_probs=30.5
Q ss_pred cccccCCCCCC-eecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 78 LCAKCKSPGDQ-FLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 78 ~C~vC~~~g~~-ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
-|..|+.+|++ -|.=..|...||..|+..-+. + ....-.||.|+
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~-~-~~~~~~CPmCR 78 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLS-T-QSSKGQCPMCR 78 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHc-c-ccCCCCCCCcC
Confidence 47778888743 222345999999999886555 2 23345999997
No 64
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=75.20 E-value=0.83 Score=25.61 Aligned_cols=40 Identities=25% Similarity=0.644 Sum_probs=18.7
Q ss_pred cccccccC-ceEecC--CCCCcccccccCCCCCCCCCCCeEeCcc
Q psy14606 15 CEVCQQGG-EIILCD--TCPRAYHLCCLDPELDETPEGKWSCPRC 56 (145)
Q Consensus 15 C~~C~~~g-~l~~Cd--~C~~~~H~~Cl~p~~~~~p~~~W~C~~C 56 (145)
|.+|++-. .-+.|. +|+..+|..|+.--+...... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 55676632 346788 699999999998544433222 56655
No 65
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=74.79 E-value=0.7 Score=23.64 Aligned_cols=26 Identities=35% Similarity=0.858 Sum_probs=10.9
Q ss_pred cccccCCCCC--CeecCCCCCCCCCCCC
Q psy14606 78 LCAKCKSPGD--QFLLCETCNGSYHPHC 103 (145)
Q Consensus 78 ~C~vC~~~g~--~ll~C~~C~~~yH~~C 103 (145)
.|.+|+..++ ....|..|+-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 4888988763 5788999998888765
No 66
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=71.79 E-value=0.56 Score=24.14 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=18.9
Q ss_pred cccccccCceEecCCCCCcccccccCCC
Q psy14606 15 CEVCQQGGEIILCDTCPRAYHLCCLDPE 42 (145)
Q Consensus 15 C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~ 42 (145)
|.+|.+......-..|+..||..|+...
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~ 28 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKW 28 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHH
Confidence 5567665444444568889999998743
No 67
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=71.54 E-value=2.9 Score=21.25 Aligned_cols=12 Identities=50% Similarity=1.376 Sum_probs=9.4
Q ss_pred CCCeEeCccccC
Q psy14606 48 EGKWSCPRCVSD 59 (145)
Q Consensus 48 ~~~W~C~~C~~~ 59 (145)
.+.|.|+.|...
T Consensus 2 ~g~W~C~~C~~~ 13 (30)
T PF00641_consen 2 EGDWKCPSCTFM 13 (30)
T ss_dssp SSSEEETTTTEE
T ss_pred CcCccCCCCcCC
Confidence 468999999743
No 68
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=71.52 E-value=1.9 Score=23.64 Aligned_cols=30 Identities=23% Similarity=0.656 Sum_probs=15.9
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 89 FLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 89 ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
.+.|..|..+.-.++.- ......|.|+.|.
T Consensus 2 p~rC~~C~aylNp~~~~-----~~~~~~w~C~~C~ 31 (40)
T PF04810_consen 2 PVRCRRCRAYLNPFCQF-----DDGGKTWICNFCG 31 (40)
T ss_dssp S-B-TTT--BS-TTSEE-----ETTTTEEEETTT-
T ss_pred ccccCCCCCEECCcceE-----cCCCCEEECcCCC
Confidence 46788887766444432 2344589999995
No 69
>KOG1632|consensus
Probab=70.16 E-value=2.7 Score=34.15 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=30.6
Q ss_pred CeecCCCCCCCCCCCC--CCCCCCCCCCCCceeCCCCC
Q psy14606 88 QFLLCETCNGSYHPHC--LPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 88 ~ll~C~~C~~~yH~~C--l~~~~~~~~p~~~w~C~~C~ 123 (145)
.++.|+.|..|||..| ++.+.....+...|+|..|.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~ 111 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECK 111 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccc
Confidence 6799999999999999 99887734456789999994
No 70
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=69.43 E-value=4.5 Score=20.62 Aligned_cols=26 Identities=31% Similarity=0.894 Sum_probs=20.4
Q ss_pred cccccccc--Cc-eEecCCCCCccccccc
Q psy14606 14 YCEVCQQG--GE-IILCDTCPRAYHLCCL 39 (145)
Q Consensus 14 ~C~~C~~~--g~-l~~Cd~C~~~~H~~Cl 39 (145)
.|.+|++. |. .-.|+.|.-..|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 58888874 55 7789999999998874
No 71
>KOG3612|consensus
Probab=67.94 E-value=5.5 Score=34.26 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=38.4
Q ss_pred cccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 74 EKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 74 ~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
....+|+.|..+| ..+.|+-|-+.||..|+.|.-....-...|.++.+.
T Consensus 58 N~d~~cfechlpg-~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 58 NIDPFCFECHLPG-AVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CCCcccccccCCc-ceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 3445899999999 889999999999999999864312233478888885
No 72
>KOG2807|consensus
Probab=67.21 E-value=5.8 Score=32.08 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=29.7
Q ss_pred ccccccccCCC--CCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 75 KEVLCAKCKSP--GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 75 ~~~~C~vC~~~--g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
...+|+.|... +.....|..|...|-.+|.-- +-+.--.||.|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~-----iHesLh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVF-----IHESLHNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHH-----HHhhhhcCCCcC
Confidence 34469999442 235788999999998888652 334445677775
No 73
>KOG1829|consensus
Probab=66.40 E-value=1 Score=39.01 Aligned_cols=29 Identities=34% Similarity=0.914 Sum_probs=22.8
Q ss_pred CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 87 DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 87 ~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
++...|..|..+||..|+.... +. ||.|.
T Consensus 529 ~~~~rC~~C~avfH~~C~~r~s----~~----CPrC~ 557 (580)
T KOG1829|consen 529 RNTRRCSTCLAVFHKKCLRRKS----PC----CPRCE 557 (580)
T ss_pred ccceeHHHHHHHHHHHHHhccC----CC----CCchH
Confidence 4678899999999999998521 22 99994
No 74
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=65.98 E-value=4.5 Score=19.62 Aligned_cols=10 Identities=50% Similarity=1.620 Sum_probs=7.5
Q ss_pred CCeEeCcccc
Q psy14606 49 GKWSCPRCVS 58 (145)
Q Consensus 49 ~~W~C~~C~~ 58 (145)
++|.|+.|..
T Consensus 1 g~W~C~~C~~ 10 (26)
T smart00547 1 GDWECPACTF 10 (26)
T ss_pred CcccCCCCCC
Confidence 4699998863
No 75
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=64.81 E-value=4.1 Score=22.66 Aligned_cols=30 Identities=27% Similarity=0.748 Sum_probs=24.7
Q ss_pred ccccccccccc-----CceEecCCCCCcccccccC
Q psy14606 11 HQDYCEVCQQG-----GEIILCDTCPRAYHLCCLD 40 (145)
Q Consensus 11 ~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~ 40 (145)
...+|.+|++. ..-+.|+.|....|..|+.
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 35679999872 2678899999999999987
No 76
>KOG1701|consensus
Probab=61.56 E-value=0.42 Score=39.65 Aligned_cols=28 Identities=18% Similarity=0.661 Sum_probs=22.5
Q ss_pred ccccccccc--CceEecCCCCCcccccccC
Q psy14606 13 DYCEVCQQG--GEIILCDTCPRAYHLCCLD 40 (145)
Q Consensus 13 ~~C~~C~~~--g~l~~Cd~C~~~~H~~Cl~ 40 (145)
.+|..|+++ |+-.-|..=++.||..|..
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFt 304 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFT 304 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhccccee
Confidence 379999884 7777788888999988876
No 77
>KOG1081|consensus
Probab=61.38 E-value=8.5 Score=32.56 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=22.7
Q ss_pred cccccccccccCCCCCCeecCCCCCCCCCCCCCC
Q psy14606 72 VKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLP 105 (145)
Q Consensus 72 ~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~ 105 (145)
.......|++|.++| .++.|+.+..++|..|.+
T Consensus 85 ~~~~~~~c~vc~~gg-s~v~~~s~~~~~~r~c~~ 117 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGG-SLVTCKSRIQAPHRKCKP 117 (463)
T ss_pred cCCCcchhccccCCC-ccceeccccccccccCcC
Confidence 334456899999999 788888555555555544
No 78
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=59.59 E-value=6 Score=25.72 Aligned_cols=32 Identities=22% Similarity=0.646 Sum_probs=21.0
Q ss_pred ccccccccccccc-C-ceEecCCCCCcccccccC
Q psy14606 9 TEHQDYCEVCQQG-G-EIILCDTCPRAYHLCCLD 40 (145)
Q Consensus 9 ~~~~~~C~~C~~~-g-~l~~Cd~C~~~~H~~Cl~ 40 (145)
...+..|.+|++. | ....=--|+..||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3556789999984 2 222222456999999975
No 79
>PF12773 DZR: Double zinc ribbon
Probab=59.25 E-value=9.1 Score=21.56 Aligned_cols=8 Identities=50% Similarity=1.062 Sum_probs=3.7
Q ss_pred CeEeCccc
Q psy14606 50 KWSCPRCV 57 (145)
Q Consensus 50 ~W~C~~C~ 57 (145)
.++|+.|.
T Consensus 29 ~~~C~~Cg 36 (50)
T PF12773_consen 29 KKICPNCG 36 (50)
T ss_pred CCCCcCCc
Confidence 34455553
No 80
>KOG2752|consensus
Probab=58.55 E-value=9.8 Score=30.61 Aligned_cols=91 Identities=18% Similarity=0.381 Sum_probs=51.2
Q ss_pred cccccccc-CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCC-----C-CCcc----ccccccccccc
Q psy14606 14 YCEVCQQG-GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS-----P-PAEE----VKEKEVLCAKC 82 (145)
Q Consensus 14 ~C~~C~~~-g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~-----~-~~~~----~~~~~~~C~vC 82 (145)
.|..|.-. +....|-.|...+|-.=.. +.-..+++|.|--+.++...-.-. . ..++ -+.+..+|. |
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~l--veL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~-C 133 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHEL--VELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCK-C 133 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCcee--eeccccCCcccccccccccccccccccccccccchhhhhhhhcceeEE-e
Confidence 35555543 3667788787777743222 122345778887666543221110 0 1111 112234565 6
Q ss_pred CCCC--------CCeecCCCCCCCCC-CCCCCCC
Q psy14606 83 KSPG--------DQFLLCETCNGSYH-PHCLPDP 107 (145)
Q Consensus 83 ~~~g--------~~ll~C~~C~~~yH-~~Cl~~~ 107 (145)
.... ..|++|.-|.-||| ..|++..
T Consensus 134 d~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 134 DTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred cCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 5521 46999999999999 8888753
No 81
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=57.56 E-value=3.8 Score=22.57 Aligned_cols=30 Identities=27% Similarity=0.668 Sum_probs=24.4
Q ss_pred ccccccccccc--C--ceEecCCCCCcccccccC
Q psy14606 11 HQDYCEVCQQG--G--EIILCDTCPRAYHLCCLD 40 (145)
Q Consensus 11 ~~~~C~~C~~~--g--~l~~Cd~C~~~~H~~Cl~ 40 (145)
...+|.+|++. + +.+.|..|....|..|+.
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCccccccccCcCCCCcCCCCCCchHHHHHHh
Confidence 45679999873 2 468899999999999987
No 82
>PHA02929 N1R/p28-like protein; Provisional
Probab=56.46 E-value=4.1 Score=31.43 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=30.7
Q ss_pred ccccccccccccC---c-----eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606 10 EHQDYCEVCQQGG---E-----IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (145)
Q Consensus 10 ~~~~~C~~C~~~g---~-----l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 59 (145)
..+..|.+|.+.- + +..=..|...||..|+...+.. .-.||.|+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~ 225 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTP 225 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCE
Confidence 4567899998741 1 1233479999999999865443 2357777643
No 83
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=53.60 E-value=9.7 Score=25.49 Aligned_cols=32 Identities=25% Similarity=0.686 Sum_probs=25.5
Q ss_pred ccccccccccccc-----CceEecCCCCCcccccccC
Q psy14606 9 TEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLD 40 (145)
Q Consensus 9 ~~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~ 40 (145)
...-+.|.+|+.. |+.|.|..|+..|+..=++
T Consensus 32 ~va~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 32 RVAFDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EEEEEeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 3566889999764 6889999999999876555
No 84
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=50.34 E-value=4.4 Score=21.81 Aligned_cols=26 Identities=27% Similarity=0.719 Sum_probs=18.1
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606 91 LCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123 (145)
Q Consensus 91 ~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~ 123 (145)
.|..|++.||..= ..|....+|..|-
T Consensus 3 ~C~~Cg~~Yh~~~-------~pP~~~~~Cd~cg 28 (36)
T PF05191_consen 3 ICPKCGRIYHIEF-------NPPKVEGVCDNCG 28 (36)
T ss_dssp EETTTTEEEETTT-------B--SSTTBCTTTT
T ss_pred CcCCCCCcccccc-------CCCCCCCccCCCC
Confidence 5888999999754 3355577888885
No 85
>KOG0696|consensus
Probab=47.02 E-value=5 Score=33.96 Aligned_cols=89 Identities=22% Similarity=0.541 Sum_probs=53.5
Q ss_pred ccccccccccc-----cCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCC---CCCcccccccccccc
Q psy14606 10 EHQDYCEVCQQ-----GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS---PPAEEVKEKEVLCAK 81 (145)
Q Consensus 10 ~~~~~C~~C~~-----~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~---~~~~~~~~~~~~C~v 81 (145)
....+|..|.+ +-+-.-|..|.-..|..|..-- .+.||-=-+......+. ......-....+|.-
T Consensus 54 KqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefV-------tF~CPGadkg~dtDdpr~kHkf~~~tYssPTFCDh 126 (683)
T KOG0696|consen 54 KQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFV-------TFSCPGADKGPDTDDPRSKHKFKIHTYSSPTFCDH 126 (683)
T ss_pred cCCchhhhhhhheeccccCceeeeEEeehhhhhhcceE-------EEECCCCCCCCCCCCcccccceeeeecCCCchhhh
Confidence 34568999987 3467789999999999888621 13333221111000000 001111123458999
Q ss_pred cCC--CC--CCeecCCCCCCCCCCCCCC
Q psy14606 82 CKS--PG--DQFLLCETCNGSYHPHCLP 105 (145)
Q Consensus 82 C~~--~g--~~ll~C~~C~~~yH~~Cl~ 105 (145)
|++ .| ..-+.|+.|+.-.|..|+.
T Consensus 127 CGsLLyGl~HQGmKC~~C~mNVH~rCv~ 154 (683)
T KOG0696|consen 127 CGSLLYGLIHQGMKCDTCDMNVHHRCVE 154 (683)
T ss_pred HHHHHHHHHhcccccccccchHHHHHhh
Confidence 987 34 3568899999999999987
No 86
>KOG0804|consensus
Probab=45.97 E-value=8.4 Score=32.44 Aligned_cols=71 Identities=28% Similarity=0.586 Sum_probs=42.0
Q ss_pred cccccccccccc---C-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCcccccccccccccCCC
Q psy14606 10 EHQDYCEVCQQG---G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSP 85 (145)
Q Consensus 10 ~~~~~C~~C~~~---g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~ 85 (145)
.+-..|.||... . ..|.=.-|..+||-.|+..... -.||-|+..... .......|.+|+..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~p---------~~ve~~~c~~c~~~ 237 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQSP---------SVVESSLCLACGCT 237 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc------CcChhhhhhcCc---------chhhhhhhhhhccc
Confidence 344579999752 1 2344456999999999974322 247777654431 01122357777766
Q ss_pred CCCeecCCCCC
Q psy14606 86 GDQFLLCETCN 96 (145)
Q Consensus 86 g~~ll~C~~C~ 96 (145)
. +|..|--|+
T Consensus 238 ~-~LwicliCg 247 (493)
T KOG0804|consen 238 E-DLWICLICG 247 (493)
T ss_pred c-cEEEEEEcc
Confidence 5 666666553
No 87
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=45.76 E-value=5.3 Score=24.60 Aligned_cols=26 Identities=27% Similarity=0.885 Sum_probs=21.1
Q ss_pred ccccCCCCCCeecCCCCCCCCCCCCCCCC
Q psy14606 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDP 107 (145)
Q Consensus 79 C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~ 107 (145)
|. |... .|+.|..|+.+-|-.|+.|.
T Consensus 36 C~-C~Lk--AMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 36 CA-CSLK--AMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred cc-cchH--HHHHHhhccchhccccccHH
Confidence 44 4443 59999999999999999974
No 88
>KOG1734|consensus
Probab=45.72 E-value=5 Score=31.67 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=28.5
Q ss_pred ccccccccccccC------c-eE---ecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606 10 EHQDYCEVCQQGG------E-II---LCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (145)
Q Consensus 10 ~~~~~C~~C~~~g------~-l~---~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 59 (145)
-++.+|.||++.= + ++ .==+|+.+||..|+.-. -+--.+-.||.|+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW--civGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW--CIVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh--eeecCCCCCchHHHH
Confidence 5667899999741 1 11 11169999999999732 111123457777643
No 89
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=45.66 E-value=29 Score=30.71 Aligned_cols=13 Identities=38% Similarity=1.063 Sum_probs=8.1
Q ss_pred CCCCCceeCCCCC
Q psy14606 111 ELPTSGWKCPKCS 123 (145)
Q Consensus 111 ~~p~~~w~C~~C~ 123 (145)
.++.+.-||+.|-
T Consensus 36 ~~~~~~~fC~~CG 48 (645)
T PRK14559 36 EVPVDEAHCPNCG 48 (645)
T ss_pred CCCcccccccccC
Confidence 3455666777773
No 90
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=45.51 E-value=3.6 Score=29.80 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=34.8
Q ss_pred ccccccCCCCCCeecCCCCC---CCCCCCCCCCCCCCCCCCCceeCCCCCCCC-CCCchhhcccccccCC
Q psy14606 77 VLCAKCKSPGDQFLLCETCN---GSYHPHCLPDPIEGELPTSGWKCPKCSCPP-LPGKLEDMASLLRLPR 142 (145)
Q Consensus 77 ~~C~vC~~~g~~ll~C~~C~---~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~-~~~~~~~~~~~~~~~~ 142 (145)
..|.+|..+++....=..|. ++.|..||..=+. ..+...|+.|.-+. ......++..|++..+
T Consensus 9 ~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~---~s~~~~CeiC~~~Y~i~~~~kpl~~W~~~~~ 75 (162)
T PHA02825 9 KCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWIN---TSKNKSCKICNGPYNIKKNYKKCTKWRCSFR 75 (162)
T ss_pred CeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHh---cCCCCcccccCCeEEEEEecCCCccccccCc
Confidence 35777766553332222333 5778888875433 23567788885331 2234455677776554
No 91
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=45.37 E-value=18 Score=19.04 Aligned_cols=21 Identities=38% Similarity=0.967 Sum_probs=10.4
Q ss_pred cccccCCCC-----CCeecCCCCCCC
Q psy14606 78 LCAKCKSPG-----DQFLLCETCNGS 98 (145)
Q Consensus 78 ~C~vC~~~g-----~~ll~C~~C~~~ 98 (145)
.|.+|+..+ +..+.|-.|...
T Consensus 5 ~C~~C~~~~i~~~~~~~~~C~~Cg~~ 30 (33)
T PF08792_consen 5 KCSKCGGNGIVNKEDDYEVCIFCGSS 30 (33)
T ss_pred EcCCCCCCeEEEecCCeEEcccCCcE
Confidence 455555543 234555555543
No 92
>PLN02400 cellulose synthase
Probab=43.97 E-value=29 Score=32.50 Aligned_cols=48 Identities=23% Similarity=0.701 Sum_probs=38.1
Q ss_pred cccccccccccc------Cc-eEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606 10 EHQDYCEVCQQG------GE-IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (145)
Q Consensus 10 ~~~~~C~~C~~~------g~-l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 60 (145)
.+..+|.||++. |+ .+.|..|.-..=..|+. -+..+|+-.||+|+...
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE---YERkeGnq~CPQCkTrY 88 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE---YERKDGTQCCPQCKTRY 88 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhh---eecccCCccCcccCCcc
Confidence 455699999984 44 69999998888888885 35677889999998664
No 93
>PHA02862 5L protein; Provisional
Probab=43.85 E-value=2.9 Score=29.90 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=38.3
Q ss_pred cccccCCCCCCee---cCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCC-CCCchhhcccccccCC
Q psy14606 78 LCAKCKSPGDQFL---LCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP-LPGKLEDMASLLRLPR 142 (145)
Q Consensus 78 ~C~vC~~~g~~ll---~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~-~~~~~~~~~~~~~~~~ 142 (145)
.|.+|...++..+ .|.+--++.|..||..=+. ...+-.|+.|.-+. .+.+...+..|+|.-.
T Consensus 4 iCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn---~S~k~~CeLCkteY~Ik~~yKpf~kW~~~f~ 69 (156)
T PHA02862 4 ICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWIN---YSKKKECNLCKTKYNIKKTYVSFKKWNWCFN 69 (156)
T ss_pred EEEEecCcCCCCcccccccCcchhHHHHHHHHHHh---cCCCcCccCCCCeEEEEEccccHHHhhccCC
Confidence 5777777653322 2334468999999986443 34566899996442 2234456788887544
No 94
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=41.75 E-value=13 Score=29.22 Aligned_cols=30 Identities=23% Similarity=0.726 Sum_probs=20.6
Q ss_pred CCCcccccc--ccc-ccccccccc---CceEecCCC
Q psy14606 1 MSHIQDLQT--EHQ-DYCEVCQQG---GEIILCDTC 30 (145)
Q Consensus 1 ~~~~~~~~~--~~~-~~C~~C~~~---g~l~~Cd~C 30 (145)
|.+++.|.. -+| .+|.||+.+ +.|.+|..|
T Consensus 1 m~eeeqFvnIDLnddniCsVCkl~Td~~tLsfChiC 36 (285)
T PF06937_consen 1 MNEEEQFVNIDLNDDNICSVCKLGTDTETLSFCHIC 36 (285)
T ss_pred CChhhhceeeccCCCceeeeeeecccccceeeccee
Confidence 455666653 333 579999864 679999766
No 95
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=37.99 E-value=14 Score=17.93 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=10.6
Q ss_pred ceEecCCCCCcccc
Q psy14606 23 EIILCDTCPRAYHL 36 (145)
Q Consensus 23 ~l~~Cd~C~~~~H~ 36 (145)
+|+-|..|+|.|..
T Consensus 1 ~l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 1 ELVPCPICGRKFNP 14 (25)
T ss_pred CCCcCCCCCCEECH
Confidence 36778888888864
No 96
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=37.90 E-value=15 Score=22.21 Aligned_cols=18 Identities=39% Similarity=0.947 Sum_probs=12.5
Q ss_pred cccccCCCCCCeecCCCCC
Q psy14606 78 LCAKCKSPGDQFLLCETCN 96 (145)
Q Consensus 78 ~C~vC~~~g~~ll~C~~C~ 96 (145)
.|..|.+.| +...|..|+
T Consensus 40 Rc~~CRk~g-~~Y~Cp~CG 57 (61)
T COG2888 40 RCAKCRKLG-NPYRCPKCG 57 (61)
T ss_pred hhhhHHHcC-CceECCCcC
Confidence 577777777 667777664
No 97
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=37.64 E-value=28 Score=19.86 Aligned_cols=11 Identities=36% Similarity=1.196 Sum_probs=6.2
Q ss_pred CCeEeCccccC
Q psy14606 49 GKWSCPRCVSD 59 (145)
Q Consensus 49 ~~W~C~~C~~~ 59 (145)
.+|.||.|...
T Consensus 33 ~~w~CP~C~a~ 43 (47)
T PF00301_consen 33 DDWVCPVCGAP 43 (47)
T ss_dssp TT-B-TTTSSB
T ss_pred CCCcCcCCCCc
Confidence 46999988644
No 98
>KOG1952|consensus
Probab=37.01 E-value=9.3 Score=34.66 Aligned_cols=47 Identities=28% Similarity=0.777 Sum_probs=35.8
Q ss_pred cccccccc----CceEecCCCCCcccccccCCCCCC---CCCCCeEeCccccCC
Q psy14606 14 YCEVCQQG----GEIILCDTCPRAYHLCCLDPELDE---TPEGKWSCPRCVSDG 60 (145)
Q Consensus 14 ~C~~C~~~----g~l~~Cd~C~~~~H~~Cl~p~~~~---~p~~~W~C~~C~~~~ 60 (145)
.|.||.+. ..+-.|.+|-..||++|+.-.-.+ .....|.|+.|.+..
T Consensus 193 eCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 193 ECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred EEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 69999863 568889999999999999844322 233689999998543
No 99
>KOG4628|consensus
Probab=35.38 E-value=24 Score=28.79 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=32.5
Q ss_pred ccccccCC---CCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCC
Q psy14606 77 VLCAKCKS---PGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP 126 (145)
Q Consensus 77 ~~C~vC~~---~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~ 126 (145)
..|.+|-+ .|+.+. =--|+-.||..|.+|=+. ...=+||.|.+..
T Consensus 230 ~~CaIClEdY~~GdklR-iLPC~H~FH~~CIDpWL~----~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLR-ILPCSHKFHVNCIDPWLT----QTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeee-EecCCCchhhccchhhHh----hcCccCCCCCCcC
Confidence 47999987 343443 378999999999998655 2245799996543
No 100
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=35.24 E-value=13 Score=27.89 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=32.5
Q ss_pred cccccccccccCceEecCCCCCcccccccCCCCCC------------CCCCCeEeCccccCC
Q psy14606 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE------------TPEGKWSCPRCVSDG 60 (145)
Q Consensus 11 ~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~------------~p~~~W~C~~C~~~~ 60 (145)
++-.|.||.+.-....-..|+..|...|+...+.. ...+...||.|+..-
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 44579999986433333579999999999643211 022456899997654
No 101
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=34.80 E-value=30 Score=32.45 Aligned_cols=49 Identities=29% Similarity=0.729 Sum_probs=38.6
Q ss_pred ccccccccccccc------Cc-eEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606 9 TEHQDYCEVCQQG------GE-IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (145)
Q Consensus 9 ~~~~~~C~~C~~~------g~-l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 60 (145)
..+..+|.||++. |+ .+.|..|.-..=..|+. -+..+|+-.||+|+...
T Consensus 14 ~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE---YEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKTKY 69 (1079)
T ss_pred ccCCceeeecccccCcCCCCCEEEEeccCCCccccchhh---hhhhcCCccCCccCCch
Confidence 3456699999984 44 69999998888888885 45677889999998654
No 102
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.58 E-value=5.2 Score=25.50 Aligned_cols=49 Identities=27% Similarity=0.686 Sum_probs=21.5
Q ss_pred ccccccccccccc------Cc-eEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606 9 TEHQDYCEVCQQG------GE-IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (145)
Q Consensus 9 ~~~~~~C~~C~~~------g~-l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 60 (145)
..+..+|.||++. |+ ++.|..|.-..=..|+.- +...+.-.|++|....
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY---Erkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY---ERKEGNQVCPQCKTRY 61 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH---HHHTS-SB-TTT--B-
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHH---HhhcCcccccccCCCc
Confidence 4567899999973 43 788999977776777752 3456778899997554
No 103
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=32.87 E-value=5.3 Score=21.37 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=15.7
Q ss_pred cccccccCc-eEecCCCCCcccccccCCC
Q psy14606 15 CEVCQQGGE-IILCDTCPRAYHLCCLDPE 42 (145)
Q Consensus 15 C~~C~~~g~-l~~Cd~C~~~~H~~Cl~p~ 42 (145)
|.+|.+.-. -+.=..|+-.|...|+...
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~ 29 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKW 29 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHH
Confidence 456665422 2224567777777777643
No 104
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.79 E-value=55 Score=26.29 Aligned_cols=27 Identities=26% Similarity=0.896 Sum_probs=19.6
Q ss_pred ccccccccccc------------C-ceEecCCCCCccccc
Q psy14606 11 HQDYCEVCQQG------------G-EIILCDTCPRAYHLC 37 (145)
Q Consensus 11 ~~~~C~~C~~~------------g-~l~~Cd~C~~~~H~~ 37 (145)
+...|-||+.. | ..+.|..|...+|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~ 225 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV 225 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc
Confidence 56789999852 1 478888888777743
No 105
>PLN02436 cellulose synthase A
Probab=32.15 E-value=32 Score=32.25 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=37.7
Q ss_pred cccccccccccc------Cc-eEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606 10 EHQDYCEVCQQG------GE-IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (145)
Q Consensus 10 ~~~~~C~~C~~~------g~-l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 60 (145)
.+..+|.||++. |+ .+.|..|.-..-..|+. .+..+++-.||+|+...
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye---yer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE---YERREGNQACPQCKTRY 88 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhh---hhhhcCCccCcccCCch
Confidence 455699999984 44 69999998888888885 35667889999998664
No 106
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=31.78 E-value=33 Score=29.24 Aligned_cols=9 Identities=44% Similarity=1.028 Sum_probs=5.4
Q ss_pred CCCCCCCCC
Q psy14606 98 SYHPHCLPD 106 (145)
Q Consensus 98 ~yH~~Cl~~ 106 (145)
+|-..||..
T Consensus 27 ~yCp~CL~~ 35 (483)
T PF05502_consen 27 YYCPNCLFE 35 (483)
T ss_pred eECcccccc
Confidence 455666654
No 107
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=31.48 E-value=57 Score=24.36 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=11.5
Q ss_pred ccccccccccccCceE
Q psy14606 10 EHQDYCEVCQQGGEII 25 (145)
Q Consensus 10 ~~~~~C~~C~~~g~l~ 25 (145)
....+|..|++.|-+.
T Consensus 58 ~~~~~C~nCg~~GH~~ 73 (190)
T COG5082 58 EENPVCFNCGQNGHLR 73 (190)
T ss_pred ccccccchhcccCccc
Confidence 3445799999888654
No 108
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=31.34 E-value=8.3 Score=21.75 Aligned_cols=43 Identities=21% Similarity=0.519 Sum_probs=21.9
Q ss_pred ccccccccccCceEecCCCCCc-ccccccCCCCCCCCCCCeEeCcccc
Q psy14606 12 QDYCEVCQQGGEIILCDTCPRA-YHLCCLDPELDETPEGKWSCPRCVS 58 (145)
Q Consensus 12 ~~~C~~C~~~g~l~~Cd~C~~~-~H~~Cl~p~~~~~p~~~W~C~~C~~ 58 (145)
+..|.+|.+.-..+.-.-|+.. |-..|+.-.+. ....||.|+.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~ 45 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK----RKKKCPICRQ 45 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH----TTSBBTTTTB
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc----cCCCCCcCCh
Confidence 5678999886433333345544 44455542111 4456777663
No 109
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=31.15 E-value=41 Score=18.23 Aligned_cols=21 Identities=19% Similarity=0.602 Sum_probs=13.1
Q ss_pred ccccCCCCCC-eecCCCCCCCC
Q psy14606 79 CAKCKSPGDQ-FLLCETCNGSY 99 (145)
Q Consensus 79 C~vC~~~g~~-ll~C~~C~~~y 99 (145)
|.+|++.... .+.|..|.+.|
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~F 22 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLF 22 (39)
T ss_pred CcccCCcccccCeECCccCCcc
Confidence 5567765422 46788887755
No 110
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.05 E-value=34 Score=17.68 Aligned_cols=9 Identities=44% Similarity=1.527 Sum_probs=7.5
Q ss_pred CceeCCCCC
Q psy14606 115 SGWKCPKCS 123 (145)
Q Consensus 115 ~~w~C~~C~ 123 (145)
..|.||.|-
T Consensus 16 ~~~~CP~Cg 24 (33)
T cd00350 16 APWVCPVCG 24 (33)
T ss_pred CCCcCcCCC
Confidence 589999995
No 111
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=30.42 E-value=9.5 Score=21.81 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=22.3
Q ss_pred ccccCC---CCCCeecCCCCC---CCCCCCCCCCCCCCCCCCCceeCCCC
Q psy14606 79 CAKCKS---PGDQFLLCETCN---GSYHPHCLPDPIEGELPTSGWKCPKC 122 (145)
Q Consensus 79 C~vC~~---~g~~ll~C~~C~---~~yH~~Cl~~~~~~~~p~~~w~C~~C 122 (145)
|.+|.. .++.++.=-.|. +++|..||..=+. .. +...|+.|
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~-~~--~~~~C~iC 48 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWIN-ES--GNKTCEIC 48 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHH-Hc--CCCcCCCC
Confidence 556665 223444433454 6899999986433 11 12366655
No 112
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=29.98 E-value=48 Score=28.27 Aligned_cols=32 Identities=25% Similarity=0.786 Sum_probs=23.5
Q ss_pred ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606 23 EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (145)
Q Consensus 23 ~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 59 (145)
+|.+|..|.+--...|+..- ...|||+.|...
T Consensus 4 ~L~fC~~C~~irc~~c~~~E-----i~~~yCp~CL~~ 35 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE-----IDSYYCPNCLFE 35 (483)
T ss_pred cceecccccccCChhhcccc-----cceeECcccccc
Confidence 57889988887777777632 346999999744
No 113
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.65 E-value=26 Score=27.46 Aligned_cols=64 Identities=22% Similarity=0.527 Sum_probs=26.8
Q ss_pred cccccccccccc------------C-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCC-CCCcccccc
Q psy14606 10 EHQDYCEVCQQG------------G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS-PPAEEVKEK 75 (145)
Q Consensus 10 ~~~~~C~~C~~~------------g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~-~~~~~~~~~ 75 (145)
.....|-||+.. | ..+.|..|...+|..= ..|+.|-+........ ..++.....
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R------------~~Cp~Cg~~~~~~l~~~~~e~~~~~r 237 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR------------IKCPYCGNTDHEKLEYFTVEGEPAYR 237 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--T------------TS-TTT---SS-EEE--------SEE
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC------------CCCcCCCCCCCcceeeEecCCCCcEE
Confidence 344689999852 3 5789999998888432 2388886443211100 122333445
Q ss_pred cccccccCCC
Q psy14606 76 EVLCAKCKSP 85 (145)
Q Consensus 76 ~~~C~vC~~~ 85 (145)
...|..|+.+
T Consensus 238 ve~C~~C~~Y 247 (290)
T PF04216_consen 238 VEVCESCGSY 247 (290)
T ss_dssp EEEETTTTEE
T ss_pred EEECCcccch
Confidence 5567777654
No 114
>KOG4236|consensus
Probab=29.52 E-value=15 Score=32.25 Aligned_cols=29 Identities=24% Similarity=0.697 Sum_probs=24.4
Q ss_pred cccccccccc-----CceEecCCCCCcccccccC
Q psy14606 12 QDYCEVCQQG-----GEIILCDTCPRAYHLCCLD 40 (145)
Q Consensus 12 ~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~ 40 (145)
..+|..|++- -+-+.|++|+..||..|..
T Consensus 156 PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~ 189 (888)
T KOG4236|consen 156 PTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAF 189 (888)
T ss_pred chHHHHHHHHHHHHHHccccccCCCCcHhhhhhh
Confidence 4589999872 3678999999999999986
No 115
>KOG1844|consensus
Probab=29.12 E-value=36 Score=28.65 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=30.4
Q ss_pred CeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCC
Q psy14606 88 QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP 126 (145)
Q Consensus 88 ~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~ 126 (145)
.++.|+.|++|=|..|...... .. ...+.|..|+-+.
T Consensus 100 ~~i~c~~c~~Wqh~~C~g~~~~-~~-p~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 100 LMIQCDWCGRWQHKICCGSFKS-TK-PDKYVCEICTPRN 136 (508)
T ss_pred eeeCCcccCcccCceeeeecCC-CC-chhceeeeecccc
Confidence 6899999999999999997644 33 5699999997443
No 116
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=28.98 E-value=38 Score=29.76 Aligned_cols=32 Identities=25% Similarity=0.760 Sum_probs=24.7
Q ss_pred CeecCCC-CCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606 88 QFLLCET-CNGSYHPHCLPDPIEGELPTSGWKCPKCSC 124 (145)
Q Consensus 88 ~ll~C~~-C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~ 124 (145)
+-+.|.. |...+.++|.- ...+..|.|+.|-.
T Consensus 52 epv~C~~pC~avlnpyC~i-----d~r~~~W~CpfCnq 84 (755)
T COG5047 52 EPVKCTAPCKAVLNPYCHI-----DERNQSWICPFCNQ 84 (755)
T ss_pred CCceecccchhhcCcceee-----ccCCceEecceecC
Confidence 4577887 99999999975 33456899999943
No 117
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=28.92 E-value=48 Score=19.50 Aligned_cols=28 Identities=36% Similarity=0.926 Sum_probs=22.9
Q ss_pred cccccccc--------CceEecCCCCCcccccccCC
Q psy14606 14 YCEVCQQG--------GEIILCDTCPRAYHLCCLDP 41 (145)
Q Consensus 14 ~C~~C~~~--------g~l~~Cd~C~~~~H~~Cl~p 41 (145)
.|.+|+.. |+++-|..|+..|-..-++|
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDP 39 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCC
Confidence 57778752 78999999999998887776
No 118
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.77 E-value=86 Score=25.15 Aligned_cols=28 Identities=21% Similarity=0.637 Sum_probs=20.2
Q ss_pred cccccccccccc--------------CceEecCCCCCccccc
Q psy14606 10 EHQDYCEVCQQG--------------GEIILCDTCPRAYHLC 37 (145)
Q Consensus 10 ~~~~~C~~C~~~--------------g~l~~Cd~C~~~~H~~ 37 (145)
.+...|-||+.. ...+.|..|...+|..
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~ 223 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV 223 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc
Confidence 345589999852 1478899998888854
No 119
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=28.29 E-value=18 Score=19.82 Aligned_cols=28 Identities=29% Similarity=0.799 Sum_probs=11.4
Q ss_pred CCCCcccccccCCCCCCCCCCCeEeCcc
Q psy14606 29 TCPRAYHLCCLDPELDETPEGKWSCPRC 56 (145)
Q Consensus 29 ~C~~~~H~~Cl~p~~~~~p~~~W~C~~C 56 (145)
.|+..|=..|+...+.......+.||.|
T Consensus 15 ~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 15 PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 3555555555553333332233666654
No 120
>KOG1280|consensus
Probab=27.20 E-value=30 Score=28.30 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=6.2
Q ss_pred eEecCCCCC
Q psy14606 24 IILCDTCPR 32 (145)
Q Consensus 24 l~~Cd~C~~ 32 (145)
-|-||+|.+
T Consensus 8 ~v~CdgC~k 16 (381)
T KOG1280|consen 8 GVSCDGCGK 16 (381)
T ss_pred Cceeccccc
Confidence 466777776
No 121
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.12 E-value=89 Score=21.29 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=14.5
Q ss_pred eEecCCCCCcccccccCCCCCCCC
Q psy14606 24 IILCDTCPRAYHLCCLDPELDETP 47 (145)
Q Consensus 24 l~~Cd~C~~~~H~~Cl~p~~~~~p 47 (145)
||.=..=.|+||..---++..+++
T Consensus 25 LVss~HLARSyHHLfPl~~f~ev~ 48 (112)
T TIGR00622 25 LILSTHLARSYHHLFPLKAFQEIP 48 (112)
T ss_pred EeccchHHHhhhccCCCccccccc
Confidence 444445667888766655555553
No 122
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.07 E-value=54 Score=17.13 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=5.5
Q ss_pred cccccCCCC
Q psy14606 78 LCAKCKSPG 86 (145)
Q Consensus 78 ~C~vC~~~g 86 (145)
.|.+|+.+.
T Consensus 20 ~CP~Cg~~~ 28 (34)
T cd00729 20 KCPICGAPK 28 (34)
T ss_pred cCcCCCCch
Confidence 577776643
No 123
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=26.89 E-value=21 Score=25.69 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=14.0
Q ss_pred ccccCCCC-CCeecCCCCCCCCCC
Q psy14606 79 CAKCKSPG-DQFLLCETCNGSYHP 101 (145)
Q Consensus 79 C~vC~~~g-~~ll~C~~C~~~yH~ 101 (145)
|..|+-.. .-+++|..|.+||--
T Consensus 3 C~YCG~~~p~~vv~C~~c~kWFCN 26 (152)
T PF09416_consen 3 CAYCGIHDPSCVVKCNTCNKWFCN 26 (152)
T ss_dssp -TTT----CCCEEEETTTTEEEES
T ss_pred ccccCCCCcccEeEcCCCCcEeec
Confidence 66677422 378999999988853
No 124
>PF14369 zf-RING_3: zinc-finger
Probab=26.78 E-value=61 Score=17.13 Aligned_cols=6 Identities=50% Similarity=1.813 Sum_probs=3.2
Q ss_pred eCCCCC
Q psy14606 118 KCPKCS 123 (145)
Q Consensus 118 ~C~~C~ 123 (145)
.||.|.
T Consensus 23 ~CP~C~ 28 (35)
T PF14369_consen 23 ACPRCH 28 (35)
T ss_pred CCcCCC
Confidence 355554
No 125
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.69 E-value=57 Score=19.64 Aligned_cols=18 Identities=28% Similarity=0.844 Sum_probs=11.0
Q ss_pred cccccCCCCCCeecCCCCC
Q psy14606 78 LCAKCKSPGDQFLLCETCN 96 (145)
Q Consensus 78 ~C~vC~~~g~~ll~C~~C~ 96 (145)
.|..|++.+ +...|-.|.
T Consensus 38 RC~~CRk~~-~~Y~CP~CG 55 (59)
T PRK14890 38 RCEKCRKQS-NPYTCPKCG 55 (59)
T ss_pred echhHHhcC-CceECCCCC
Confidence 466666666 566666553
No 126
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=26.08 E-value=52 Score=19.01 Aligned_cols=23 Identities=35% Similarity=0.885 Sum_probs=16.3
Q ss_pred ccccccccccc------------cCceEecCCCCC
Q psy14606 10 EHQDYCEVCQQ------------GGEIILCDTCPR 32 (145)
Q Consensus 10 ~~~~~C~~C~~------------~g~l~~Cd~C~~ 32 (145)
..+..|..|.- +.+++.|+.|++
T Consensus 20 v~~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 20 VEGGTCSGCHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred eeCCccCCCCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 44557888863 247899999986
No 127
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=25.79 E-value=38 Score=20.45 Aligned_cols=33 Identities=24% Similarity=0.650 Sum_probs=17.6
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCC-CCceeCCCCC
Q psy14606 90 LLCETCNGSYHPHCLPDPIEGELP-TSGWKCPKCS 123 (145)
Q Consensus 90 l~C~~C~~~yH~~Cl~~~~~~~~p-~~~w~C~~C~ 123 (145)
-.|..|..-.--.|-..|.. .+. ..+|+|-+|.
T Consensus 23 ntCT~Ck~~VCnlCGFNP~P-hl~E~~eWLCLnCQ 56 (61)
T PF05715_consen 23 NTCTECKSQVCNLCGFNPTP-HLTEVKEWLCLNCQ 56 (61)
T ss_pred cHHHHHhhhhhcccCCCCCc-cccccceeeeecch
Confidence 33444444444444444433 333 3589999994
No 128
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.92 E-value=20 Score=28.83 Aligned_cols=42 Identities=24% Similarity=0.562 Sum_probs=27.7
Q ss_pred ccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606 13 DYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (145)
Q Consensus 13 ~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 57 (145)
-.|.+|.+. ++-+.=--|+..||..|++..+.. ..-.||-|+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~---y~~~CPvCr 368 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG---YSNKCPVCR 368 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhh---hcccCCccC
Confidence 469999863 443444569999999999854331 234566665
No 129
>KOG2932|consensus
Probab=24.61 E-value=31 Score=27.89 Aligned_cols=38 Identities=32% Similarity=0.773 Sum_probs=27.0
Q ss_pred cccccccCCC----CCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606 76 EVLCAKCKSP----GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC 124 (145)
Q Consensus 76 ~~~C~vC~~~----g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~ 124 (145)
..+|..|+.+ | .||-|+ |.+||.=... ..+-.|+.|+.
T Consensus 90 VHfCd~Cd~PI~IYG-RmIPCk------HvFCl~CAr~----~~dK~Cp~C~d 131 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYG-RMIPCK------HVFCLECARS----DSDKICPLCDD 131 (389)
T ss_pred eEeecccCCcceeee-cccccc------hhhhhhhhhc----CccccCcCccc
Confidence 5689999884 5 788887 8888875422 22568888863
No 130
>PF03380 DUF282: Caenorhabditis protein of unknown function, DUF282; InterPro: IPR005044 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=23.36 E-value=95 Score=17.04 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCCC
Q psy14606 92 CETCNGSYHPHCLPDP 107 (145)
Q Consensus 92 C~~C~~~yH~~Cl~~~ 107 (145)
|..|.+.|-..|.+..
T Consensus 2 Cs~C~~iYdt~CqG~g 17 (39)
T PF03380_consen 2 CSVCSKIYDTTCQGFG 17 (39)
T ss_pred CcccccccCCCCccCC
Confidence 7889999999999863
No 131
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.94 E-value=59 Score=15.44 Aligned_cols=6 Identities=33% Similarity=1.387 Sum_probs=2.3
Q ss_pred cccccC
Q psy14606 78 LCAKCK 83 (145)
Q Consensus 78 ~C~vC~ 83 (145)
+|..|+
T Consensus 15 fC~~CG 20 (23)
T PF13240_consen 15 FCPNCG 20 (23)
T ss_pred chhhhC
Confidence 344333
No 132
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=22.65 E-value=44 Score=18.04 Aligned_cols=11 Identities=36% Similarity=1.153 Sum_probs=7.7
Q ss_pred ecCCCCCcccc
Q psy14606 26 LCDTCPRAYHL 36 (145)
Q Consensus 26 ~Cd~C~~~~H~ 36 (145)
.|-.|.++||-
T Consensus 4 ~CprC~kg~Hw 14 (36)
T PF14787_consen 4 LCPRCGKGFHW 14 (36)
T ss_dssp C-TTTSSSCS-
T ss_pred cCcccCCCcch
Confidence 57889999994
No 133
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=22.33 E-value=57 Score=18.81 Aligned_cols=11 Identities=36% Similarity=1.220 Sum_probs=7.7
Q ss_pred CCeEeCccccC
Q psy14606 49 GKWSCPRCVSD 59 (145)
Q Consensus 49 ~~W~C~~C~~~ 59 (145)
.+|.||.|...
T Consensus 33 ~~w~CP~C~a~ 43 (50)
T cd00730 33 DDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCc
Confidence 36888888643
No 134
>KOG3268|consensus
Probab=21.66 E-value=27 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=16.7
Q ss_pred eEecC--CCCCcccccccCCCCC
Q psy14606 24 IILCD--TCPRAYHLCCLDPELD 44 (145)
Q Consensus 24 l~~Cd--~C~~~~H~~Cl~p~~~ 44 (145)
-..|| .|++.||+.||.-.+.
T Consensus 182 DqtCdN~qCgkpFHqiCL~dWLR 204 (234)
T KOG3268|consen 182 DQTCDNIQCGKPFHQICLTDWLR 204 (234)
T ss_pred cccccccccCCcHHHHHHHHHHH
Confidence 35687 6999999999986554
No 135
>KOG0827|consensus
Probab=20.44 E-value=20 Score=29.80 Aligned_cols=45 Identities=29% Similarity=0.710 Sum_probs=31.8
Q ss_pred ccccccccccC----ceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606 12 QDYCEVCQQGG----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (145)
Q Consensus 12 ~~~C~~C~~~g----~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 57 (145)
.+.|.||.++- +|--=..|+..||..||.-.....|+. --||.|.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCcc-CCCCcee
Confidence 46899996642 455556799999999998655555543 2477776
No 136
>KOG2626|consensus
Probab=20.29 E-value=80 Score=27.30 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=26.9
Q ss_pred CCeecCCCCCCCCCCCCCCCC--CCC---CCCCCceeCCCCCC
Q psy14606 87 DQFLLCETCNGSYHPHCLPDP--IEG---ELPTSGWKCPKCSC 124 (145)
Q Consensus 87 ~~ll~C~~C~~~yH~~Cl~~~--~~~---~~p~~~w~C~~C~~ 124 (145)
.+.++|..|-+++|..++.+. .+. ....+.+.|..|+-
T Consensus 33 ~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~ 75 (544)
T KOG2626|consen 33 IVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTP 75 (544)
T ss_pred ceeeEeeecccccccccccccccccccCCcccceeEEeccccC
Confidence 468999999999997655442 111 22356899999973
No 137
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=20.16 E-value=21 Score=18.88 Aligned_cols=27 Identities=15% Similarity=0.678 Sum_probs=16.9
Q ss_pred ccccccc-CceEecCCCCCcccccccCC
Q psy14606 15 CEVCQQG-GEIILCDTCPRAYHLCCLDP 41 (145)
Q Consensus 15 C~~C~~~-g~l~~Cd~C~~~~H~~Cl~p 41 (145)
|.+|.+. .+-+.-..|+..|...|+..
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~ 28 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEK 28 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHH
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHH
Confidence 5566654 23445667777777777763
Done!