RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14606
(145 letters)
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo
sapiens} PDB: 2ke1_A 2kft_A
Length = 66
Score = 71.3 bits (175), Expect = 1e-17
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
+ +++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C C+ E
Sbjct: 2 AMAQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 61
Query: 66 SPPAE 70
E
Sbjct: 62 PRAEE 66
Score = 40.1 bits (94), Expect = 1e-05
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLP 128
CA C+ G+ + C+ C ++H CL P+ E+P+ W+C C +
Sbjct: 11 CAVCRDGGE-LICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSCLQATVQ 58
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B,
MI2-beta, PHD, protein binding, peptide binding metal
binding protein; NMR {Homo sapiens}
Length = 61
Score = 70.5 bits (173), Expect = 2e-17
Identities = 40/53 (75%), Positives = 48/53 (90%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
+T+HQDYCEVCQQGGEIILCDTCPRAYH+ CLDP++++ PEGKWSCP C +G
Sbjct: 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59
Score = 39.3 bits (92), Expect = 2e-05
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 67 PPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP 126
P + + C C+ G + +LC+TC +YH CL +E + P W CP C
Sbjct: 2 PLGSYETDHQDYCEVCQQ-GGEIILCDTCPRAYHMVCLDPDME-KAPEGKWSCPHCEKEG 59
Query: 127 L 127
+
Sbjct: 60 I 60
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 69.8 bits (171), Expect = 4e-17
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS 66
H+D+C VC++ G++++CDTC R YHL CLDP L P+G W CPRC + +
Sbjct: 1 HMIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEA 59
Score = 41.6 bits (98), Expect = 2e-06
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLP 128
C+ C+ Q L+C+TC+ YH CL P++ +P W CP+C L
Sbjct: 7 FCSVCRK-SGQLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQDQMLK 55
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 68.5 bits (168), Expect = 8e-17
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ H+D+C VC++ G++++CDTC R YHL CLDP L P+G W CPRC
Sbjct: 3 SGSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
Score = 40.0 bits (94), Expect = 8e-06
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 70 EEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
E C+ C+ Q L+C+TC+ YH CL P++ +P W CP+C
Sbjct: 3 SGSSGHEDFCSVCRK-SGQLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRC 53
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding
protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A*
1mm3_A
Length = 61
Score = 67.0 bits (164), Expect = 4e-16
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62
H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59
Score = 46.6 bits (111), Expect = 3e-08
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
C CK G+ L C+TC SYH HCL P+ E+P W CP+C+CP L GK
Sbjct: 12 CRVCKDGGE-LLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALKGK 61
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 67.3 bits (164), Expect = 7e-16
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
+ C VCQ+ G++++C+ C +HL C P L + P +WSC C +
Sbjct: 19 GTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEE 78
Query: 66 SPPAEEVKE 74
+ K
Sbjct: 79 DVDLQACKL 87
Score = 42.6 bits (100), Expect = 2e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 66 SPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCP 125
+ + +C C+ PGD ++C C +H C ++ ++P W C C
Sbjct: 15 IDEFGTLDDSATICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVL 72
Query: 126 PLPGK 130
P +
Sbjct: 73 PDLKE 77
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 66.0 bits (160), Expect = 2e-14
Identities = 20/88 (22%), Positives = 32/88 (36%)
Query: 13 DYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEV 72
C VCQ+ G++++C+ C +HL C P L + P +WSC C +
Sbjct: 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLSLD 62
Query: 73 KEKEVLCAKCKSPGDQFLLCETCNGSYH 100
SP +Q +
Sbjct: 63 GADSTGVVAKLSPANQRKCERVLLALFC 90
Score = 42.9 bits (100), Expect = 7e-06
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDM 134
+C C+ PGD ++C C +H C ++ ++P W C C P + +
Sbjct: 4 ICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVLPDLKEEDGS 58
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 62.7 bits (152), Expect = 6e-14
Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 26/121 (21%)
Query: 8 QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
C VC G+ C TC + YH CLD + W CP C
Sbjct: 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV------ 56
Query: 65 ASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
C CK G+ + L+C+TC+ YH CL ++ +PT+GWKC C
Sbjct: 57 --------------CQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK-SVPTNGWKCKNC 101
Query: 123 S 123
Sbjct: 102 R 102
Score = 46.1 bits (109), Expect = 2e-07
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 8 QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
Q C+ C+Q GE +++CDTC + YH CL P + P W C C
Sbjct: 50 QCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103
Score = 32.6 bits (74), Expect = 0.013
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 74 EKEVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKL 131
CA C SPGD C TC YH CL D L +GW+CP+C +
Sbjct: 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCL-DIAVTPLKRAGWQCPECKVCQNCKQS 63
Query: 132 EDMASLL 138
+ + +L
Sbjct: 64 GEDSKML 70
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 64.2 bits (156), Expect = 7e-14
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPE---TASP 67
++D+C VCQ GGE++ C+ CP+ +HL C P L P G+W C C PE
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 62
Query: 68 PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSY-HPHCLP--DPIEGELP 113
P+ ++K+ +P D+ Y H L DP+ +P
Sbjct: 63 PSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVP 111
Score = 36.1 bits (83), Expect = 0.001
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 75 KEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLP 128
E CA C++ G+ L CE C +H C + P+ W C C P
Sbjct: 3 NEDWCAVCQNGGE-LLCCEKCPKVFHLSCHVPTLT-NFPSGEWICTFCRDLSKP 54
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 63.8 bits (154), Expect = 2e-13
Identities = 30/96 (31%), Positives = 41/96 (42%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67
++D+C VCQ GG+++ C+ CP+ +HL C P L P G W C C G PE
Sbjct: 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYD 62
Query: 68 PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHC 103
K+ A+ SP DQ Y
Sbjct: 63 CDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHEL 98
Score = 36.8 bits (84), Expect = 9e-04
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 74 EKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
E CA C++ GD L CE C +H C + P+ W C C P
Sbjct: 5 PNEDWCAVCQNGGD-LLCCEKCPKVFHLTCHVPTLL-SFPSGDWICTFCRDIGKPEV 59
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 54.6 bits (132), Expect = 2e-11
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
C+VC++ GE +ILCD C +A+HL CL P L E P+G+W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
Score = 37.3 bits (87), Expect = 9e-05
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 79 CAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123
C C+ G+ + +LC+ CN ++H CL + E+P W+CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEWQCPACQ 48
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 55.3 bits (133), Expect = 2e-11
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 8 QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV-SDGPPE 63
Q C+VC +G E ++ CD C YH+ CL P L E P G W CP+C+ ++
Sbjct: 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQP 71
Query: 64 TASPPAEEVKEKEVLCAKC 82
+ E+ ++ L
Sbjct: 72 PEAFGFEQATQEYSLSGPS 90
Score = 39.5 bits (92), Expect = 2e-05
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 76 EVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLED 133
+C C + + L C+ C+ +YH CL P+ E+P W+CPKC E
Sbjct: 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCILAECKQPPEA 74
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 56.7 bits (136), Expect = 9e-11
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 15 CEVCQQG---GEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
C +C + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 226
Score = 47.8 bits (113), Expect = 2e-07
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 40 DPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNG 97
+ + P + S P C + C C D + L+C+ C+
Sbjct: 145 GSPMVDNPMRRKSGPSCKH-------CKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDM 197
Query: 98 SYHPHCLPDPIEGELPTSG-WKCPKC 122
++H +CL P+ +P+ W CP+C
Sbjct: 198 AFHIYCLDPPLS-SVPSEDEWYCPEC 222
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 77
Score = 52.1 bits (125), Expect = 3e-10
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 10 EHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCVSD 59
H C VC E +LCD C AYH+ CL+P LD+ PE W CP C +D
Sbjct: 24 CHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77
Score = 37.5 bits (87), Expect = 1e-04
Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 47 PEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCL 104
C C D E K C C + LLC+ CN +YH +CL
Sbjct: 7 GRNDTECDLCGGD----------PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCL 56
Query: 105 PDPIEGELPTSGWKCPKCS 123
P++ W CP C
Sbjct: 57 NPPLDKVPEEEYWYCPSCK 75
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 54.0 bits (129), Expect = 3e-10
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRC 56
+ C C +GG +I CD C A+ C+ L +W C C
Sbjct: 59 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 114
Score = 49.8 bits (118), Expect = 1e-08
Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 10/127 (7%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVL 78
I+ C C + + D C C + S + +
Sbjct: 9 DGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS---RDSDGMDEQ 65
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDPI------EGELPTSGWKCPKCSCPPLPGKLE 132
C C G+ + C+ C+ ++ C+ + + W C C PL +
Sbjct: 66 CRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVT 124
Query: 133 DMASLLR 139
S+
Sbjct: 125 ACNSVFE 131
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 52.1 bits (124), Expect = 1e-09
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRC 56
+ C C +GG +I CD C A+ C+ L +W C C
Sbjct: 53 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYIC 108
Score = 50.9 bits (121), Expect = 3e-09
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 10/128 (7%)
Query: 22 GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAK 81
I+ C C + + D C C + S + + C
Sbjct: 6 MGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS---RDSDGMDEQCRW 62
Query: 82 CKSPGDQFLLCETCNGSYHPHCLPDPI------EGELPTSGWKCPKCSCPPLPGKLEDMA 135
C G+ + C+ C+ ++ C+ + + W C C PL +
Sbjct: 63 CAEGGN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPLLDLVTACN 121
Query: 136 SLLRLPRQ 143
S+ Q
Sbjct: 122 SVYENLEQ 129
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 50.1 bits (119), Expect = 5e-09
Identities = 26/125 (20%), Positives = 37/125 (29%), Gaps = 24/125 (19%)
Query: 8 QTEHQDYCEVCQQGG---------EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
E C C E+I C C + H CL + T K +C+
Sbjct: 1 HMEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIE 60
Query: 59 DGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
+ C D L C++C+ +H C DP +P W
Sbjct: 61 CKTCSS--------------CRDQGKNADNMLFCDSCDRGFHMECC-DPPLTRMPKGMWI 105
Query: 119 CPKCS 123
C C
Sbjct: 106 CQICR 110
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 49.7 bits (118), Expect = 7e-09
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 5 QDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
Q ++ + C + +++ CD C R YH+ CL+P + E PEG WSC C
Sbjct: 54 QCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106
Score = 49.3 bits (117), Expect = 1e-08
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 30/122 (24%)
Query: 14 YCEVCQQGG----------EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPE 63
YC+ C G E++ C C R+ H CL L+ T K +C+
Sbjct: 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCI------ 56
Query: 64 TASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPK 121
+ C C + + Q L C+ C+ YH +CL P+ E P W C
Sbjct: 57 -----------ECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVA-EPPEGSWSCHL 104
Query: 122 CS 123
C
Sbjct: 105 CW 106
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex;
1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A
2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 47.1 bits (112), Expect = 2e-08
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
C +C + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 70
Score = 34.8 bits (80), Expect = 0.001
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 51 WSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPI 108
SC C D + C C D + L+C+ C+ ++H +CL P+
Sbjct: 3 PSCKHCKDD----------VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL 52
Query: 109 EGELPTSGWKCPKC 122
W CP+C
Sbjct: 53 SSVPSEDEWYCPEC 66
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 47.2 bits (112), Expect = 3e-08
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
C C + G +I CD C YH C+ E +W CP+C + +
Sbjct: 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73
Score = 32.1 bits (73), Expect = 0.010
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 65 ASPPAEEVKEKEVLCAKCKSP--GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
A +E + +C C P G + C+ C+ YH C+ + W CPKC
Sbjct: 7 AYVIRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCV-GIMAAPPEEMQWFCPKC 65
Query: 123 S 123
+
Sbjct: 66 A 66
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 46.6 bits (110), Expect = 7e-08
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 6 DLQTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDET----PEGKWSCPRC 56
D E C VC+Q +++ C C YH C P++ + P W C RC
Sbjct: 10 DFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69
Query: 57 VSDGPPETASPP 68
Sbjct: 70 TRQMKRMAQKNQ 81
Score = 35.0 bits (80), Expect = 0.001
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 70 EEVKEKEVLCAKCKS----PGDQFLLCETCNGSYHPHCLPDPIEGEL---PTSGWKCPKC 122
+ E + C C+ G+Q + C+ C+ YH C + + P W C +C
Sbjct: 10 DFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69
Query: 123 SC 124
+
Sbjct: 70 TR 71
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 48.4 bits (114), Expect = 1e-07
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 11 HQDYCEVCQQGGEIILCD--TCPRAYHLCCLDPELDE------TPEGKWSCPRC 56
+Q YC +C G +++C C R Y C+D + W C C
Sbjct: 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145
Score = 32.2 bits (72), Expect = 0.051
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 79 CAKCKSPGDQFLLCE--TCNGSYHPHCL-----PDPIEGELPTSGWKCPKCSCPPLPGKL 131
C+ C S G+ L+C C Y C+ P S W C C G L
Sbjct: 96 CSICCS-GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLL 154
Query: 132 E 132
+
Sbjct: 155 Q 155
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone,
methylation, UHRF1, PHD, ligase-NUCL protein complex;
1.80A {Homo sapiens}
Length = 77
Score = 45.2 bits (107), Expect = 1e-07
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 15 CEVCQQG---GEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
C +C + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77
Score = 36.0 bits (83), Expect = 5e-04
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 43 LDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYH 100
L SC C D + C C D + L+C+ C+ ++H
Sbjct: 3 LGSPEFSGPSCKHCKDD----------VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFH 52
Query: 101 PHCLPDPIEGELPTSGWKCPKC 122
+CL P+ W CP+C
Sbjct: 53 IYCLDPPLSSVPSEDEWYCPEC 74
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 46.7 bits (110), Expect = 2e-07
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 11 HQDYCEVCQQGGEIILCDT--CPRAYHLCCLDPELDE------TPEGKWSCPRC 56
+Q YC +C G E+++C C R + + C+D + E W+C C
Sbjct: 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMC 131
Score = 31.3 bits (70), Expect = 0.056
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 79 CAKCKSPGDQFLLCET--CNGSYHPHCL-----PDPIEGELPTSGWKCPKCSCPPLPGKL 131
C C + L+C C + C+ P + + W C C G L
Sbjct: 82 CTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLL 140
Query: 132 E 132
Sbjct: 141 R 141
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A*
3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 45.6 bits (108), Expect = 5e-07
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 9 TEHQDYCEVCQQGGE----IILCDTCPRAYHLCCLD-PELDETPEGKWSCPRCVSDGPPE 63
++ + YC +C+ + I CD C YH C+ + + ++ CP+C S
Sbjct: 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAM 63
Query: 64 TASPPAEEVKEKE 76
T P E +
Sbjct: 64 TVLTPLTEKDYEG 76
Score = 36.4 bits (84), Expect = 0.001
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 73 KEKEVLCAKCKSPGDQ---FLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
L CK+P D+ ++ C+ C YH C+ + CP+C
Sbjct: 4 GSDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 42.9 bits (101), Expect = 8e-07
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 15 CEVCQQG-----GEIILCDTCPRAYHLCCLDPELDE---TPEGKWSCPRCV 57
C +CQ+ E+++CD C + YH C P +D + KW C +CV
Sbjct: 9 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59
Score = 35.6 bits (82), Expect = 4e-04
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 76 EVLCAKCKS----PGDQFLLCETCNGSYHPHCLPDPIEGEL--PTSGWKCPKC 122
+C C+ ++ ++C+ C YH C I+ + W C +C
Sbjct: 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 43.5 bits (101), Expect = 7e-06
Identities = 16/83 (19%), Positives = 20/83 (24%), Gaps = 3/83 (3%)
Query: 40 DPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSY 99
W CP C+ + C C P D L + N S
Sbjct: 107 AETASADVVSTWVCPICMVSNETQGEFTKDTLPTPI---CINCGVPADYELTKSSINCSN 163
Query: 100 HPHCLPDPIEGELPTSGWKCPKC 122
+P S CP C
Sbjct: 164 AIDPNANPQNQFGVNSENICPAC 186
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 40.3 bits (94), Expect = 1e-05
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 3 HIQDLQTEHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
H + C +C G I+ CD C A H C PEG+W C C+
Sbjct: 7 HHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV--PYIPEGQWLCRHCL 64
Query: 58 S 58
Sbjct: 65 Q 65
Score = 31.8 bits (72), Expect = 0.014
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 70 EEVKEKEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCP 125
+ + +++ +C+ C + L C+ CN + H C P +P W C C
Sbjct: 10 QSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---YIPEGQWLCRHCLQS 66
Query: 126 P 126
Sbjct: 67 R 67
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 38.9 bits (90), Expect = 5e-05
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 10 EHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
+ C +C G I+ CD C A H C PEG+W C C+
Sbjct: 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV--PYIPEGQWLCRHCLQ 74
Score = 31.9 bits (72), Expect = 0.020
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 61 PPETASPPAEEVKEKEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSG 116
+S ++ + +++ +C+ C + L C+ CN + H C P +P
Sbjct: 10 STGGSSGSSQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---YIPEGQ 66
Query: 117 WKCPKCSCPPLPGKLE 132
W C C LE
Sbjct: 67 WLCRHCLQSRARPALE 82
>1wen_A Inhibitor of growth family, member 4; ING1-like protein;
structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 33.8 bits (77), Expect = 0.003
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 6 DLQTEHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
+ YC +C Q GE+I CD +H C+ L P GKW CPRC +
Sbjct: 10 PVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66
Query: 61 PPETA 65
P +
Sbjct: 67 GPSSG 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 35.5 bits (81), Expect = 0.003
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 54 PRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELP 113
R + + + VK C C S Q CETC H C+ +
Sbjct: 162 GRAILEMEQYIRETYPDAVKI----CNICHSLLIQGQSCETCGIRMHLPCVAKYFQS--- 214
Query: 114 TSGWKCPKCSCP 125
+ +CP C+
Sbjct: 215 NAEPRCPHCNDY 226
Score = 27.8 bits (61), Expect = 1.4
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 4 IQDLQTEHQDYCEVCQQGGEIIL----CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
Q ++ + D ++C +++ C+TC HL C+ + CP C
Sbjct: 169 EQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226
Query: 60 GPPETAS 66
P E
Sbjct: 227 WPHEIPK 233
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 35.0 bits (79), Expect = 0.005
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 58 SDGPPETASPPAEEVKEKEVLCAKCKSPGDQ---FLLCETCNGSYHPHCLPDPIEGELPT 114
+ A A + C+ P D + C+ C +H C+ +
Sbjct: 18 AAAVSVAAPGRASAPPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDI 77
Query: 115 SGWKCPKCSCP 125
+ CP C+
Sbjct: 78 DLYHCPNCAVL 88
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 32.9 bits (75), Expect = 0.006
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 8 QTEHQDYCEVCQQ--GGEIILCD--TCPRA-YHLCCLDPELDETPEGKWSCPRC 56
+ YC +C Q GE++ CD CP +H C+ L E P+GKW CP+C
Sbjct: 2 SSGSSGYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQC 52
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 32.8 bits (74), Expect = 0.008
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 5 QDLQTEHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
+ YC +C Q GE+I CD +H C+ L P GKW CPRC +
Sbjct: 29 MPVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85
Query: 60 GPPETA 65
P +
Sbjct: 86 SGPSSG 91
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 32.2 bits (73), Expect = 0.008
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 6 DLQTEHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
+ YC +C Q GE+I CD +H C+ L P+GKW CP+C D
Sbjct: 5 AIDPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDN 61
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 31.7 bits (72), Expect = 0.013
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 13 DYCEVCQQ----GGEIILCDTCPRAYHLCC--LDPELDETPEGKWSCPRCVSDGPPETA 65
C C + I CD C +H C + P E + ++ CP C + P +
Sbjct: 7 GQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIK-QYKCPSCSNKSGPSSG 64
Score = 24.4 bits (53), Expect = 6.3
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123
C + + + ++ C+ C +H C+ +KCP CS
Sbjct: 12 CGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 31.3 bits (71), Expect = 0.015
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 9 TEHQDYCEVCQQG--GEIILCDTCPRA---YHLCCLDPELDETPEGKWSCPRCVSD 59
+ YC +C Q GE+I CD +H C+D L P+GKW CPRCV +
Sbjct: 6 SNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 32.4 bits (72), Expect = 0.037
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 46 TPEGKWSCPRC--VSDGPPETASPPAEEVKEKEVLCAKCKS-----PGDQFLLCETCNGS 98
TP+ C C + A ++ ++++ L +K KS Q++ C++C
Sbjct: 8 TPKESDRCGGCGKFTHEDDLIALEEEKKKEKEKPLMSKKKSHHHKKNDFQWIGCDSCQTW 67
Query: 99 YHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQH 144
YH C + CPKC + + R
Sbjct: 68 YHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYKVVAPHRYRWYS 113
Score = 26.2 bits (56), Expect = 5.8
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 8 QTEHQDYCEVCQQGGEI------ILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCVSDG 60
+ + + + I CD+C YH C E E K+ CP+CV
Sbjct: 36 KEKEKPLMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHT 95
Query: 61 PPETASPPAEEVKEKEVLCAKCK 83
+ + +
Sbjct: 96 GHSIRYKVVAPHRYRWYSPNEKH 118
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 30.6 bits (69), Expect = 0.039
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 21 GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
G ++ CD C +H C+ + K+ C RC+ P +
Sbjct: 28 GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSSG 72
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 31.9 bits (71), Expect = 0.051
Identities = 12/105 (11%), Positives = 26/105 (24%), Gaps = 14/105 (13%)
Query: 13 DYCEVCQQ-------GGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRCVS 58
++C +C + +++ C C R H C + + ++C C
Sbjct: 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 62
Query: 59 DGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHC 103
P E +E++
Sbjct: 63 RHPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQQQPLDL 107
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A
2qic_A*
Length = 60
Score = 29.8 bits (67), Expect = 0.056
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 10 EHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
YC +C Q GE+I CD +H C+ L P GKW CPRC +
Sbjct: 8 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 31.9 bits (71), Expect = 0.063
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 14 YCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPETASPP 68
YC +C+ +I CD C +H C+ E ++ + + CP C P
Sbjct: 7 YC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKR 65
Query: 69 AEEVKEKEVLCAKCKSPG-DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPL 127
K + K G F+ + G T + P+
Sbjct: 66 RGSSKGHDTHKGKPVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPI 125
Score = 26.8 bits (58), Expect = 2.7
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 78 LCAKCKSPGDQ---FLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP 126
+ C+ P D + C+ C +H C+ E + CP C
Sbjct: 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion
protein, signal transduction, transcription, metal BI
WNT proteins; 1.90A {Homo sapiens}
Length = 105
Score = 30.3 bits (67), Expect = 0.094
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 15 CEVCQQGGE-----IILCDTCPRAYHLCCL------DPELDETPEGKWSCPRCVSDGPPE 63
C C+ I+ +C + +H C L W+C C+
Sbjct: 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65
Query: 64 TASPPAEEVK 73
+ ++ V
Sbjct: 66 GSGSGSQFVY 75
Score = 26.8 bits (58), Expect = 1.5
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 79 CAKCKSPGDQFLLCE-TCNGSYHPHCL-----PDPIEGELPTSGWKCPKCSCPPLPG 129
C + +LCE +C +H C + ++ W C C
Sbjct: 9 CRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 28.7 bits (64), Expect = 0.20
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 14 YCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPET 64
YC VC+ +I CD C +H C+ E +E P+ + CP C T
Sbjct: 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKST 66
Score = 26.8 bits (59), Expect = 1.1
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123
+C + C+ C +H C+ E + CP C
Sbjct: 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCE 59
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 28.3 bits (63), Expect = 0.27
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 14 YCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+C G +I C+ C HL C PE + C +C
Sbjct: 23 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKC 64
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 28.6 bits (63), Expect = 0.30
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 5 QDLQTEHQDYCEVCQQG--GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
+ + + YC C+ G ++ CD +H C+ L + P+GKW C + +
Sbjct: 19 EGNNNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75
Query: 60 GPPETASP 67
+ +
Sbjct: 76 IANQRSKS 83
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 28.3 bits (63), Expect = 0.31
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 64 TASPPAEEVKEKEVLCAKCKSP--GDQFLLCETCNGSYHPHCL----PDPIEGELPTSGW 117
+ S EV + L C+ P + C+ C +H C+ E +
Sbjct: 3 SGSSGECEVYDPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDY 62
Query: 118 KCPKCS 123
CP C+
Sbjct: 63 ICPNCT 68
Score = 27.2 bits (60), Expect = 0.71
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 14 YCEVCQQ---GGEIILCDTCPRAYHLCCL-----DPELDETPEGKWSCPRCVSDGPPETA 65
YC +C+Q +I CD C +H C+ L E + CP C P +
Sbjct: 18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSSG 76
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 28.0 bits (62), Expect = 0.38
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLED 133
LC + + + C C +H C+ E + + CP C P +++
Sbjct: 16 LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKN 71
Score = 25.7 bits (56), Expect = 2.5
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 14 YCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPETASP 67
YC +C+Q +I C C +H C+ E + + + CP C + P
Sbjct: 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKN 71
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 27.3 bits (61), Expect = 0.43
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 14 YCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+C G +I C+ C HL C PE + C +C
Sbjct: 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKC 49
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A
{Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A
1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C*
1z6v_A 1z6w_A
Length = 334
Score = 27.5 bits (60), Expect = 1.6
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDPIE 109
C G LC C G+ C E
Sbjct: 158 CVPGADKGQFPNLCRLCAGTGENKCAFSSQE 188
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 26.0 bits (57), Expect = 1.9
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCL 104
C C S Q CETC H C+
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCV 43
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 26.7 bits (59), Expect = 3.2
Identities = 10/41 (24%), Positives = 11/41 (26%), Gaps = 4/41 (9%)
Query: 45 ETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSP 85
PE K C C + E C C SP
Sbjct: 29 VVPESKRFCWNCGRPVGRSDSETKGAS----EGWCPYCGSP 65
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Length = 206
Score = 26.2 bits (57), Expect = 3.6
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 90 LLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKL 131
L C +C+ + + + +G +C C P +L
Sbjct: 23 LSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQL 64
>2d74_B Translation initiation factor 2 beta subunit; protein complex;
2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Length = 148
Score = 25.7 bits (56), Expect = 4.4
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 74 EKEVLCAKCKSP--------GDQFLLCETC 95
++ V+C C SP FL CE C
Sbjct: 102 KEYVICPVCGSPDTKIIKRDRFHFLKCEAC 131
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit;
two domain protein, mixed alpha-beta structure; NMR
{Methanothermobacterthermautotrophicus} SCOP: d.241.1.1
g.59.1.1
Length = 138
Score = 25.7 bits (56), Expect = 4.8
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 8/30 (26%)
Query: 74 EKEVLCAKCKSP--------GDQFLLCETC 95
K V+C +C P L CE C
Sbjct: 100 NKFVICHECNRPDTRIIREGRISLLKCEAC 129
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 24.1 bits (52), Expect = 6.3
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 25 ILCD-TCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ CD C +H C+ + + C C
Sbjct: 19 VQCDGGCDEWFHQVCVGVSPEMAENEDYICINC 51
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.4 bits (55), Expect = 6.9
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 40 DPELDETPEGKWS-------CPRCVSDGPPETASPPAEEVKEKEVLCAKC 82
+D+ + CP C PP+ E E +V+CA C
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVY-PPKI----VERFSEGDVVCALC 48
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2nxu_A 2qmu_C* 3v11_C*
Length = 139
Score = 24.9 bits (54), Expect = 8.1
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 8/30 (26%)
Query: 74 EKEVLCAKCKSP--------GDQFLLCETC 95
+ V C+ CKS +++C C
Sbjct: 101 KAYVECSTCKSLDTILKKEKKSWYIVCLAC 130
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 25.6 bits (56), Expect = 8.2
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 27 CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPE 63
+ C +CC PE P + P P
Sbjct: 81 ANECESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPSF 117
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 25.3 bits (56), Expect = 9.2
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 76 EVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKL 131
+ C C + + + P+P + K P+C G L
Sbjct: 134 KTRCTSCGVVAENYK--SPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLL 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.484
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,339,104
Number of extensions: 134295
Number of successful extensions: 710
Number of sequences better than 10.0: 1
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 250
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.7 bits)