RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14606
(145 letters)
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 57.7 bits (139), Expect = 7e-13
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55
Score = 38.8 bits (90), Expect = 1e-05
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 74 EKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
C CK G+ L C+TC SYH HCL P+ E+P W CP+C+CP L GK
Sbjct: 7 HHMEFCRVCKDGGE-LLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALKGK 61
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 57.3 bits (138), Expect = 1e-12
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPA 69
+ C VCQ+ G++++C+ C +HL C P L + P +WSC C +
Sbjct: 5 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDL 64
Query: 70 EEVK 73
+ K
Sbjct: 65 QACK 68
Score = 34.2 bits (78), Expect = 6e-04
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 71 EVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
+ + +C C+ PGD ++C C +H C ++ ++P W C C P +
Sbjct: 2 TLDDSATICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVLPDLKE 59
Query: 131 LED 133
+
Sbjct: 60 EDV 62
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 45.0 bits (106), Expect = 4e-08
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C+VC++ GE +ILCD C +A+HL CL P L E P+G+W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
Score = 33.4 bits (76), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 79 CAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
C C+ G+ + +LC+ CN ++H CL + E+P W+CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEWQCPAC 47
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 43.9 bits (103), Expect = 2e-07
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 21 GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
G ++ CD C +H C+ + K+ C RC+ P +
Sbjct: 28 GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSSG 72
Score = 32.7 bits (74), Expect = 0.003
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
C G++ L C+ C +H C+ + S + C +C
Sbjct: 20 KCGTKDDDGERMLACDGCGVWHHTRCI-GINNADALPSKFLCFRC 63
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 44.1 bits (103), Expect = 2e-07
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 2 SHIQDLQTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETP----EGKWS 52
S D E C VC+Q +++ C C YH C P++ + W
Sbjct: 6 SGADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWY 65
Query: 53 CPRCV 57
C RC
Sbjct: 66 CARCT 70
Score = 32.1 bits (72), Expect = 0.005
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 70 EEVKEKEVLCAKCKSP----GDQFLLCETCNGSYHPHCLPDPIEGELPTSG---WKCPKC 122
+ E + C C+ G+Q + C+ C+ YH C + + W C +C
Sbjct: 10 DFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69
Query: 123 SCPP 126
+
Sbjct: 70 TRQM 73
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 41.6 bits (97), Expect = 1e-06
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 12 QDYCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPETA 65
C C + I CD C +H C+ ++ CP C + P +
Sbjct: 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPSSG 64
Score = 33.1 bits (75), Expect = 0.002
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC 124
C + + + ++ C+ C +H C+ +KCP CS
Sbjct: 12 CGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 38.5 bits (89), Expect = 2e-05
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 14 YCEVCQQGGEIILCDTCPRAYHLCCL-----DPELDETPEGKWSCPRCVSDGPPETA 65
C +I CD C +H C+ L E + CP C P +
Sbjct: 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSSG 76
Score = 30.4 bits (68), Expect = 0.016
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 64 TASPPAEEVKEKEVLCAKCKSP--GDQFLLCETCNGSYHPHCL----PDPIEGELPTSGW 117
+ S EV + L C+ P + C+ C +H C+ E +
Sbjct: 3 SGSSGECEVYDPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDY 62
Query: 118 KCPKCSCPPLP 128
CP C+ P
Sbjct: 63 ICPNCTILSGP 73
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 30.4 bits (68), Expect = 0.021
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 21 GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPET 64
+I C C +H C+ E + + + CP C + P
Sbjct: 24 NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI 68
Score = 30.0 bits (67), Expect = 0.030
Identities = 12/59 (20%), Positives = 22/59 (37%)
Query: 78 LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMAS 136
LC + + + C C +H C+ E + + CP C P +++ S
Sbjct: 16 LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKNWHS 74
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 25.3 bits (55), Expect = 0.87
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 14 YCEVCQQG--GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSD 59
YC +C Q GE+I CD +H C+ L P GKW CPRC +
Sbjct: 4 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 51
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit
7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 26.7 bits (59), Expect = 0.87
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 123 SCPPLPGKLEDMASLLRLPR---QH 144
SC L G L+++A L L R QH
Sbjct: 191 SCKNLKGGLQEVAEQLELERIGPQH 215
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 25.7 bits (56), Expect = 0.92
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 10 EHQDYCEVCQQ--GGEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
++ +C Q GE+I CD +H C+ P+GKW CP+C D P +
Sbjct: 13 PNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLT--YKPKGKWYCPKCRGDSGPSS 70
Query: 65 A 65
Sbjct: 71 G 71
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 24.7 bits (53), Expect = 2.1
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 14 YCEVCQQGGEIILCD--TCPRAYHLCCLD-----PELDETPEGKWSCPRCVSDGPPETA 65
C + +I C+ C H+ C+ + + + C C P +
Sbjct: 20 VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSSG 78
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus
faecalis [TaxId: 1351]}
Length = 132
Score = 24.0 bits (52), Expect = 5.3
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 4 IQDLQTEHQDYCEVCQQGGEIILCDTC 30
+ Q + + ++L D
Sbjct: 42 LSGTQAKLAAILKEAGNVPTLVLADLK 68
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 23.7 bits (51), Expect = 5.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 8 QTEHQDYCEVCQ--QGGEIILCDTCPRAYHLCCL 39
+ + C+VC+ + C C R +H CL
Sbjct: 11 PVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCL 44
Score = 23.7 bits (51), Expect = 6.0
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 13/90 (14%)
Query: 61 PPETASPPAEEVKEKEVLCAKCKSP-GDQFLLCETCNGSYHPHCLP-----------DPI 108
+S P E V + +C C+ + C C +H CL +
Sbjct: 1 GSSGSSGPREPV-VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVT 59
Query: 109 EGELPTSGWKCPKCSCPPLPGKLEDMASLL 138
E +GW C C L E S
Sbjct: 60 EMAHTETGWSCHYCDNINLLLTEESGPSSG 89
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 24.3 bits (52), Expect = 7.3
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSG-WKC 119
C G LC C G+ C E SG +KC
Sbjct: 154 CVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC 195
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 22.6 bits (48), Expect = 7.3
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 79 CAKCKSPGDQFLLCETCNGSYHPHCLP 105
C C+ C+TC +H HC
Sbjct: 17 CDICQKFLLNGFRCQTCGYKFHEHCST 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.484
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,080
Number of extensions: 31337
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 80
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.7 bits)