Query psy14608
Match_columns 199
No_of_seqs 163 out of 689
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 16:05:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 99.9 2.6E-28 8.9E-33 208.1 3.9 188 11-199 59-263 (267)
2 2xhe_B Syntaxin1; exocytosis, 99.9 7.3E-24 2.5E-28 181.3 1.1 186 12-198 73-279 (279)
3 2nps_B Syntaxin 13, vesicle-as 99.7 6.8E-18 2.3E-22 116.7 3.8 67 132-199 3-69 (71)
4 1jth_B Syntaxin 1A; coiled-coi 99.7 4.1E-17 1.4E-21 114.4 3.8 67 132-199 7-73 (77)
5 1sfc_B Protein (syntaxin 1A), 99.6 1.3E-16 4.4E-21 113.4 2.4 67 131-198 17-83 (83)
6 3hd7_B Syntaxin-1A; membrane p 99.6 3.8E-16 1.3E-20 116.4 3.4 69 130-199 16-84 (109)
7 3b5n_B Protein SSO1; snare com 99.6 9.2E-16 3.1E-20 105.4 4.0 63 132-195 7-69 (69)
8 1s94_A S-syntaxin; three helix 99.6 4.8E-16 1.6E-20 124.8 2.3 109 12-154 68-180 (180)
9 1gl2_B Syntaxin 7; membrane pr 99.5 1.6E-14 5.6E-19 98.0 2.1 60 132-192 6-65 (65)
10 1n7s_B Syntaxin 1A; neuronal s 99.4 4.4E-14 1.5E-18 96.6 2.8 59 132-191 9-67 (68)
11 1fio_A SSO1 protein; four heli 99.3 1.4E-11 4.9E-16 99.3 11.9 100 63-163 79-196 (196)
12 3c98_B Syntaxin-1A; protein co 99.3 2.2E-12 7.5E-17 107.5 4.3 157 42-199 104-275 (279)
13 1ez3_A Syntaxin-1A; three heli 99.2 6.3E-11 2.2E-15 89.3 9.9 87 12-100 37-127 (127)
14 1dn1_B Syntaxin 1A, syntaxin b 98.8 1.2E-06 4.2E-11 74.1 19.8 58 104-161 122-179 (267)
15 1fio_A SSO1 protein; four heli 98.1 0.00036 1.2E-08 55.5 17.7 60 102-161 86-146 (196)
16 2xhe_B Syntaxin1; exocytosis, 97.2 0.0031 1.1E-07 53.1 11.5 59 103-161 141-199 (279)
17 2dnx_A Syntaxin-12; snare, HAB 96.4 0.044 1.5E-06 41.2 10.6 39 59-97 82-120 (130)
18 1ez3_A Syntaxin-1A; three heli 95.0 0.67 2.3E-05 33.7 13.2 30 103-132 98-127 (127)
19 1s94_A S-syntaxin; three helix 93.1 0.031 1.1E-06 43.9 1.6 62 20-108 105-166 (180)
20 1nhl_A Synaptosomal-associated 91.3 0.24 8.1E-06 31.5 3.8 31 158-188 22-52 (54)
21 3b5n_C Protein transport prote 91.0 0.29 1E-05 32.9 4.3 36 158-193 34-69 (70)
22 1hs7_A Syntaxin VAM3; UP-and-D 89.5 0.76 2.6E-05 32.8 5.6 63 26-97 28-93 (97)
23 1n7s_C SNAP-25A; neuronal snar 84.1 1.1 3.8E-05 30.6 3.8 32 158-189 45-76 (79)
24 1l4a_C S-SNAP25 fusion protein 80.7 0.62 2.1E-05 32.3 1.5 31 158-188 49-79 (83)
25 1n7s_D SNAP-25A; neuronal snar 63.7 9.1 0.00031 24.6 4.0 30 160-189 34-63 (66)
26 2nps_D Syntaxin-6; vesicle fus 61.2 13 0.00046 25.0 4.6 53 141-193 18-76 (82)
27 1n7s_B Syntaxin 1A; neuronal s 57.1 10 0.00036 24.6 3.3 63 136-199 6-68 (68)
28 1sfc_D Protein (SNAP-25B), pro 53.9 16 0.00053 25.0 4.0 30 160-189 53-82 (87)
29 1gl2_D Syntaxin 8, vesicle tra 50.9 13 0.00045 23.8 3.0 30 160-189 33-62 (65)
30 1l4a_D S-SNAP25 fusion protein 49.7 12 0.0004 25.8 2.7 47 142-189 37-83 (87)
31 1fxk_A Prefoldin; archaeal pro 48.8 62 0.0021 22.1 7.6 14 77-90 3-16 (107)
32 1gl2_C VTI1B, vesicle transpor 47.6 23 0.00078 22.8 3.8 30 159-188 32-61 (65)
33 1gl2_B Syntaxin 7; membrane pr 47.3 13 0.00044 23.9 2.5 59 140-199 7-65 (65)
34 3b5n_D Protein transport prote 46.8 21 0.0007 23.1 3.5 29 160-188 34-62 (64)
35 3b5n_B Protein SSO1; snare com 42.9 14 0.00047 24.1 2.2 55 139-194 7-61 (69)
36 3swy_A Cyclic nucleotide-gated 41.5 58 0.002 19.7 4.9 25 68-92 12-36 (46)
37 3hd7_B Syntaxin-1A; membrane p 39.8 20 0.0007 25.4 2.9 47 145-192 38-84 (109)
38 1jth_B Syntaxin 1A; coiled-coi 36.3 20 0.00068 23.7 2.2 47 145-192 27-73 (77)
39 3swf_A CGMP-gated cation chann 35.9 73 0.0025 21.3 4.9 25 68-92 14-38 (74)
40 1sfc_B Protein (syntaxin 1A), 31.5 26 0.00089 23.6 2.2 21 166-186 58-78 (83)
41 3lqv_P Splicing factor 3B subu 29.3 40 0.0014 19.8 2.4 24 130-153 11-34 (39)
42 2zqm_A Prefoldin beta subunit 26.3 1.6E+02 0.0055 20.2 7.8 14 77-90 8-21 (117)
43 2nps_B Syntaxin 13, vesicle-as 25.3 90 0.0031 20.1 3.9 46 145-191 23-68 (71)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.94 E-value=2.6e-28 Score=208.10 Aligned_cols=188 Identities=52% Similarity=0.661 Sum_probs=134.7
Q ss_pred chhhcccchhhhhHHHhhcc--cchHHHHHHHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 11 PQIIETRLIEQSIEQEEQSN--KSSADLRIRDTQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 88 (199)
Q Consensus 11 ~~~~~~~~~e~~~~~~~~~n--~~~~dlr~~~~~Lk~l~~~~~~~~~~~~~s~e~Ri~k~q~~~L~~~f~e~m~~yq~~Q 88 (199)
..+|++|.++..++.+.+.. .+....+..+.+|+.|...+...+..++++++.|++++|+..|+.+|.++|..|+.+|
T Consensus 59 ~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q 138 (267)
T 1dn1_B 59 SAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQ 138 (267)
T ss_dssp HHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788887777777755432 2222234445788888888765444466788999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHhHH-----HHHHHHhhhhhh----------HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhc
Q psy14608 89 TDYRERCKGRIQRQLEISKK-----FVEVMTEYNRTQ----------TDYRERCKGRIQRQLEITGRTTTNEELEAMLDT 153 (199)
Q Consensus 89 ~~~~~k~k~r~~rq~~i~~~-----~~e~~~e~~~~~----------~~~~e~~k~~iqRq~eI~~~e~sieEl~~m~~~ 153 (199)
..|+++|+++++||++|+++ -.+.|.+.+..+ ..-+..+.....|..+|..++.++.||++||.+
T Consensus 139 ~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~d 218 (267)
T 1dn1_B 139 SDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMD 218 (267)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 244555433211 112233444557889999999999999999999
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy14608 154 GNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199 (199)
Q Consensus 154 ~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qkk~RK 199 (199)
++ .++.+||++||+||+||++|.+||+.|..+|.+|.+||+++||
T Consensus 219 la-~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rk 263 (267)
T 1dn1_B 219 MA-MLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 263 (267)
T ss_dssp HH-HHHHHHCSGGGCHHHHHHTCCCCCCCCC---------------
T ss_pred HH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87 4557789999999999999999999999999999999999997
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.87 E-value=7.3e-24 Score=181.26 Aligned_cols=186 Identities=31% Similarity=0.406 Sum_probs=115.5
Q ss_pred hhhcccchhh--hhHHHhh--cccchHHHHHHHHhHHHHHHHHHHHhh-----cCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 12 QIIETRLIEQ--SIEQEEQ--SNKSSADLRIRDTQLRMIEQSIEQEEQ-----SNKSSADLRIRKTQHSTLSRKFVEVMT 82 (199)
Q Consensus 12 ~~~~~~~~e~--~~~~~~~--~n~~~~dlr~~~~~Lk~l~~~~~~~~~-----~~~~s~e~Ri~k~q~~~L~~~f~e~m~ 82 (199)
++|.||.+.. .+..+.. +..+...++.....|+.|...+..... .+.++.+.|++++++..|+.+|.++|.
T Consensus 73 ~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~ 152 (279)
T 2xhe_B 73 ESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMT 152 (279)
T ss_dssp TSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665555 4444332 222333334444677777776654322 122222779999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHH-----HHHHHHhhhhhhHH-------HHHHHHHHHHHHHHHhccCCCHHHHHHH
Q psy14608 83 EYNRTQTDYRERCKGRIQRQLEISKK-----FVEVMTEYNRTQTD-------YRERCKGRIQRQLEITGRTTTNEELEAM 150 (199)
Q Consensus 83 ~yq~~Q~~~~~k~k~r~~rq~~i~~~-----~~e~~~e~~~~~~~-------~~e~~k~~iqRq~eI~~~e~sieEl~~m 150 (199)
.|+.+|..|.++++.++.|++.++++ ..+.+.+.+....+ ....+.....|.-+|..++.++.||++|
T Consensus 153 ~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~ee~~~~~e~g~~~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~i 232 (279)
T 2xhe_B 153 RYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEM 232 (279)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCCSSCCCCSSTTHHHHHHHC-----------------CTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877642 12334333221110 1111112336888999999999999999
Q ss_pred HhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14608 151 LDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKAR 198 (199)
Q Consensus 151 ~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qkk~R 198 (199)
|.+++ .+|.+||+|||+||+||++|..||+.|..+|.+|.+|||++|
T Consensus 233 f~dla-~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 233 FTDMS-TLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp HHHHH-TTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 99987 455777999999999999999999999999999999999987
No 3
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.70 E-value=6.8e-18 Score=116.67 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=61.0
Q ss_pred HHHHHHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy14608 132 QRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199 (199)
Q Consensus 132 qRq~eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qkk~RK 199 (199)
.|..+|..++.++.||++||.+++ .++.+||++||+||+||+.|.+||+.|..+|.+|.+|++++||
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla-~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk 69 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLA-MMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467788888999999999999987 4557789999999999999999999999999999999999986
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.66 E-value=4.1e-17 Score=114.40 Aligned_cols=67 Identities=55% Similarity=0.729 Sum_probs=56.6
Q ss_pred HHHHHHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy14608 132 QRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199 (199)
Q Consensus 132 qRq~eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qkk~RK 199 (199)
.|..+|..++.++.||++||.+++ .++.+||++||+||+||+.|.+||+.|..+|.+|.+|++++||
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla-~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 7 TRHSEIIKLENSIRELHDMFMDMA-MLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 577888889999999999999987 4557779999999999999999999999999999999999986
No 5
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.61 E-value=1.3e-16 Score=113.45 Aligned_cols=67 Identities=54% Similarity=0.692 Sum_probs=59.2
Q ss_pred HHHHHHHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14608 131 IQRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKAR 198 (199)
Q Consensus 131 iqRq~eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qkk~R 198 (199)
..|..+|..++.++.||++||.+++ .++.+||++||+||+||+.|..||+.|..+|.+|.+|++++|
T Consensus 17 ~eR~~ei~~ie~~i~eL~~iF~dla-~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 17 ETRHSEIIKLENSIRELHDMFMDMA-MLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 3678889999999999999999987 455777999999999999999999999999999999999987
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.59 E-value=3.8e-16 Score=116.39 Aligned_cols=69 Identities=54% Similarity=0.683 Sum_probs=63.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy14608 130 RIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199 (199)
Q Consensus 130 ~iqRq~eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qkk~RK 199 (199)
.-+|..+|..++.++.||++||.+++ .++.+||++||+||+||++|.+||+.|..+|.+|.+|||++||
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla-~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk 84 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMA-MLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 84 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34678889999999999999999987 4557789999999999999999999999999999999999986
No 7
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.58 E-value=9.2e-16 Score=105.38 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=57.9
Q ss_pred HHHHHHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 132 QRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQS 195 (199)
Q Consensus 132 qRq~eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qk 195 (199)
.|..+|..++.++.||++||.+++ .++.+||++||+||+||+.|..||+.|..+|.+|.+|||
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla-~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 7 ARHQELLKLEKSMAELTQLFNDME-ELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 577788888999999999999987 455778999999999999999999999999999999985
No 8
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.57 E-value=4.8e-16 Score=124.77 Aligned_cols=109 Identities=60% Similarity=0.854 Sum_probs=57.1
Q ss_pred hhhcccchhhhhHHHhhcccchHHH----HHHHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 12 QIIETRLIEQSIEQEEQSNKSSADL----RIRDTQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRT 87 (199)
Q Consensus 12 ~~~~~~~~e~~~~~~~~~n~~~~dl----r~~~~~Lk~l~~~~~~~~~~~~~s~e~Ri~k~q~~~L~~~f~e~m~~yq~~ 87 (199)
.+|++|..+.+++.+.+.. ..++ +..+.+|+.|...+......++++++.||+++|+.+|+.+|.++|..||.+
T Consensus 68 ~~L~~~~~~~~~k~~le~l--~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~ 145 (180)
T 1s94_A 68 DILSAPQTDDQMKEELEEL--MTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTT 145 (180)
T ss_dssp HHCC-------CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888876532 2222 334478888888777654445677888999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhcC
Q psy14608 88 QTDYRERCKGRIQRQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTG 154 (199)
Q Consensus 88 Q~~~~~k~k~r~~rq~~i~~~~~e~~~e~~~~~~~~~e~~k~~iqRq~eI~~~e~sieEl~~m~~~~ 154 (199)
|.. |++.|+.+|+||++|++|++|++||++|+++|
T Consensus 146 q~~--------------------------------y~~~~K~~i~Rq~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 146 QID--------------------------------YRDRCKARIKRQMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp HHS--------------------------------CTTCCCCC------------------------
T ss_pred HHH--------------------------------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCc
Confidence 999 66667777788999999999999999999875
No 9
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.45 E-value=1.6e-14 Score=98.00 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=53.0
Q ss_pred HHHHHHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 132 QRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALK 192 (199)
Q Consensus 132 qRq~eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~ 192 (199)
.|..+|..++.++.||++||.+++ .++.+||++||+||+||++|..||+.|..+|.+|.+
T Consensus 6 eR~~~i~~ie~~i~eL~~iF~dla-~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 6 ERESSIRQLEADIMDINEIFKDLG-MMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567788888999999999999987 455778999999999999999999999999999864
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.42 E-value=4.4e-14 Score=96.62 Aligned_cols=59 Identities=49% Similarity=0.653 Sum_probs=54.0
Q ss_pred HHHHHHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 132 QRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKAL 191 (199)
Q Consensus 132 qRq~eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~ 191 (199)
.|..+|..++.++.||++||.+++ .++.+||++||+||+||+.|..||+.|..+|.+|.
T Consensus 9 eR~~ei~~Ie~~i~eL~~iF~dla-~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 9 TRHSEIIKLENSIRELHDMFMDMA-MLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888889999999999999987 45577799999999999999999999999999996
No 11
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.32 E-value=1.4e-11 Score=99.27 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH-----HHHHHhh-hh-------hhH-----HHH
Q psy14608 63 LRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQRQLEISKKF-----VEVMTEY-NR-------TQT-----DYR 124 (199)
Q Consensus 63 ~Ri~k~q~~~L~~~f~e~m~~yq~~Q~~~~~k~k~r~~rq~~i~~~~-----~e~~~e~-~~-------~~~-----~~~ 124 (199)
.|++++|+.+|+.+|.++|..|+.+|..|+++||.++.|++.++++. .+.+.+. +. +.. .-+
T Consensus 79 ~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 158 (196)
T 1fio_A 79 DTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAK 158 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHcCCchhHHHHHHHhccchHHHH
Confidence 58999999999999999999999999999999999999999887541 2223221 10 000 112
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHhcCCcccccchh
Q psy14608 125 ERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGG 163 (199)
Q Consensus 125 e~~k~~iqRq~eI~~~e~sieEl~~m~~~~~~~vf~qqG 163 (199)
..+.....|..+|..++.+|.||++||.+++..| .+||
T Consensus 159 ~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV-~~QG 196 (196)
T 1fio_A 159 TALAEVQARHQELLKLEKSMAELTQLFNDMEELV-IEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 2334456789999999999999999999987444 5556
No 12
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.27 E-value=2.2e-12 Score=107.50 Aligned_cols=157 Identities=59% Similarity=0.761 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHH---HHHHHH-hhh
Q psy14608 42 QLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQRQLEISKK---FVEVMT-EYN 117 (199)
Q Consensus 42 ~Lk~l~~~~~~~~~~~~~s~e~Ri~k~q~~~L~~~f~e~m~~yq~~Q~~~~~k~k~r~~rq~~i~~~---~~e~~~-e~~ 117 (199)
.++.|..........+....+.+...+|...|...|...+..|...+..|...++..+.+.....+. ..+.+. ..+
T Consensus 104 ~~~~i~~~~~~~~~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~ 183 (279)
T 3c98_B 104 KLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLES 183 (279)
T ss_dssp HHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHh
Confidence 3344444333333456778899999999999999999999999999999999999988887766542 111111 000
Q ss_pred --------hh---hHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14608 118 --------RT---QTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQD 186 (199)
Q Consensus 118 --------~~---~~~~~e~~k~~iqRq~eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~e 186 (199)
.+ ...........-.+...|..+..++.+|+++|.+.+ ..+.+||+++|.|++||+.+.++|+.|..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia-~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~e 262 (279)
T 3c98_B 184 GNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMA-MLVESQGEMIDRIEYNVEHAVDYVERAVSD 262 (279)
T ss_dssp CCTTSSTTTSCSCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-HHHHHHCSGGGCHHHHHHTCCCCCCCCC--
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000111111122345567777899999999999976 445778999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q psy14608 187 TKKALKYQSKARR 199 (199)
Q Consensus 187 L~kA~~~qkk~RK 199 (199)
|.+|.+|++++||
T Consensus 263 l~~A~~~q~~~Rk 275 (279)
T 3c98_B 263 TKKAVKYQSKARR 275 (279)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999987
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.22 E-value=6.3e-11 Score=89.33 Aligned_cols=87 Identities=61% Similarity=0.837 Sum_probs=70.5
Q ss_pred hhhcccchhhhhHHHhhcccchHHH----HHHHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 12 QIIETRLIEQSIEQEEQSNKSSADL----RIRDTQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRT 87 (199)
Q Consensus 12 ~~~~~~~~e~~~~~~~~~n~~~~dl----r~~~~~Lk~l~~~~~~~~~~~~~s~e~Ri~k~q~~~L~~~f~e~m~~yq~~ 87 (199)
.+|++|.++.+++++.+. ..+++ +..+.+|+.|...+...+..++++++.|++++|+.+|+.+|.++|.+||.+
T Consensus 37 ~~L~~~~~~~~~~~~l~~--l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~ 114 (127)
T 1ez3_A 37 AILASPNPDEKTKEELEE--LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNAT 114 (127)
T ss_dssp HHHHCSSCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889889999887753 23333 334478999988887765556788899999999999999999999999999
Q ss_pred HHHHHHHhhhhhH
Q psy14608 88 QTDYRERCKGRIQ 100 (199)
Q Consensus 88 Q~~~~~k~k~r~~ 100 (199)
|..|+++|+.|++
T Consensus 115 q~~yre~~k~ri~ 127 (127)
T 1ez3_A 115 QSDYRERCKGRIQ 127 (127)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHcC
Confidence 9998888888763
No 14
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=98.77 E-value=1.2e-06 Score=74.07 Aligned_cols=58 Identities=78% Similarity=1.223 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhcCCcccccc
Q psy14608 104 EISKKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQ 161 (199)
Q Consensus 104 ~i~~~~~e~~~e~~~~~~~~~e~~k~~iqRq~eI~~~e~sieEl~~m~~~~~~~vf~q 161 (199)
.+.++|.+.|.+|+.++..|++.|+.+|+||++|++|++|++||++|+++|.+.+|.+
T Consensus 122 ~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q 179 (267)
T 1dn1_B 122 TLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFAS 179 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHH
Confidence 6777899999999999999999999999999999999999999999999998889876
No 15
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=98.11 E-value=0.00036 Score=55.51 Aligned_cols=60 Identities=25% Similarity=0.518 Sum_probs=52.4
Q ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhc-CCcccccc
Q psy14608 102 QLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDT-GNPAVFTQ 161 (199)
Q Consensus 102 q~~i~~~~~e~~~e~~~~~~~~~e~~k~~iqRq~eI~~~e~sieEl~~m~~~-~~~~vf~q 161 (199)
...+.++|.+.|.+|+.++..|.+.++.++.|++.|++|+++.+|+++++++ +.+.+|.+
T Consensus 86 ~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~~e~~~~~~~~~~~~~f~~ 146 (196)
T 1fio_A 86 AENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQ 146 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHcCCchhHHHH
Confidence 3477788999999999999999999999999999999999999999999875 44566653
No 16
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=97.24 E-value=0.0031 Score=53.09 Aligned_cols=59 Identities=25% Similarity=0.558 Sum_probs=47.8
Q ss_pred HHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhcCCcccccc
Q psy14608 103 LEISKKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQ 161 (199)
Q Consensus 103 ~~i~~~~~e~~~e~~~~~~~~~e~~k~~iqRq~eI~~~e~sieEl~~m~~~~~~~vf~q 161 (199)
..+..+|.+.|.+|+.++..|.+.++.++.|++.|+++.++.++++.|+++|++.+|.+
T Consensus 141 ~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~ee~~~~~e~g~~~~f~q 199 (279)
T 2xhe_B 141 SSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSG 199 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSSTTHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCchHHHHH
Confidence 36667889999999999999999999999999999999999999999999887777753
No 17
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.38 E-value=0.044 Score=41.16 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14608 59 SSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG 97 (199)
Q Consensus 59 ~s~e~Ri~k~q~~~L~~~f~e~m~~yq~~Q~~~~~k~k~ 97 (199)
...+.|..+.+...|+..|..++..|+.+|..+.++.+.
T Consensus 82 ~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 82 STSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456779999999999999999999999999998887765
No 18
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=95.04 E-value=0.67 Score=33.69 Aligned_cols=30 Identities=77% Similarity=1.236 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy14608 103 LEISKKFVEVMTEYNRTQTDYRERCKGRIQ 132 (199)
Q Consensus 103 ~~i~~~~~e~~~e~~~~~~~~~e~~k~~iq 132 (199)
..+.++|.+.|.+|+.++..|++.|+.+|+
T Consensus 98 ~~L~~kf~e~m~~y~~~q~~yre~~k~ri~ 127 (127)
T 1ez3_A 98 STLSRKFVEVMSEYNATQSDYRERCKGRIQ 127 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 366778999999999999999999988763
No 19
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=93.10 E-value=0.031 Score=43.86 Aligned_cols=62 Identities=48% Similarity=0.714 Sum_probs=32.9
Q ss_pred hhhhHHHhhcccchHHHHHHHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14608 20 EQSIEQEEQSNKSSADLRIRDTQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRI 99 (199)
Q Consensus 20 e~~~~~~~~~n~~~~dlr~~~~~Lk~l~~~~~~~~~~~~~s~e~Ri~k~q~~~L~~~f~e~m~~yq~~Q~~~~~k~k~r~ 99 (199)
+..+......+.+++++|++++++.+|...|. .+...|+.+-..|+. +||+++
T Consensus 105 ~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~--------------------~~m~~yq~~q~~y~~-------~~K~~i 157 (180)
T 1s94_A 105 ELNIEQEEHSNKSSADLRIRKTQYSTISRKFV--------------------EVMSDYNTTQIDYRD-------RCKARI 157 (180)
T ss_dssp HHHHHHTC-----CCHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHSCTT-------CCCCC-
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH-------HHHHHH
Confidence 33343333334556677888888777766655 566678888888886 899999
Q ss_pred HHHHHHhHH
Q psy14608 100 QRQLEISKK 108 (199)
Q Consensus 100 ~rq~~i~~~ 108 (199)
.||+.|+++
T Consensus 158 ~Rq~~I~~~ 166 (180)
T 1s94_A 158 KRQMEITGR 166 (180)
T ss_dssp ---------
T ss_pred HHHHHHhCC
Confidence 999999986
No 20
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=91.27 E-value=0.24 Score=31.48 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=27.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 158 VFTQGGEMIDRIEYHVEHAVDYVQTATQDTK 188 (199)
Q Consensus 158 vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~ 188 (199)
.+..|||.|++|+.++..+..++..|.+.|.
T Consensus 22 ~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 22 MLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 4577899999999999999999999998875
No 21
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=91.04 E-value=0.29 Score=32.88 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=31.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 158 VFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKY 193 (199)
Q Consensus 158 vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~ 193 (199)
.+..|||.|++||.|++.+..+...|..+|..-..|
T Consensus 34 ~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 34 MLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 457789999999999999999999999998865554
No 22
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=89.49 E-value=0.76 Score=32.79 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=40.9
Q ss_pred HhhcccchHHHHHHHHhHH-HHHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14608 26 EEQSNKSSADLRIRDTQLR-MIEQSIEQEEQS--NKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG 97 (199)
Q Consensus 26 ~~~~n~~~~dlr~~~~~Lk-~l~~~~~~~~~~--~~~s~e~Ri~k~q~~~L~~~f~e~m~~yq~~Q~~~~~k~k~ 97 (199)
..++-+.+-.|| .+|. .+...+....+. .-++ + .|.+.|+..|..++..|+.+|+.|.++.++
T Consensus 28 qlGTkrD~~~LR---~~l~~~l~~~~~~L~k~~~~l~~----l--~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 28 KIGSKRDSKELR---YKIETELIPNCTSVRDKIESNIL----I--HQNGKLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp HTTSSSCCHHHH---HHHHHTHHHHHHHHHHHHHHSTH----H--HHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHH---HHHHHHHHHHHHHHHHHHHHhcc----c--chhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666667777777 4444 444443332210 0011 1 168999999999999999999998877654
No 23
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=84.14 E-value=1.1 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=28.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 158 VFTQGGEMIDRIEYHVEHAVDYVQTATQDTKK 189 (199)
Q Consensus 158 vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~k 189 (199)
.++.|||.|++|+.++..+..++..|...|..
T Consensus 45 ~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 45 MLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 45778999999999999999999999988763
No 24
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=80.73 E-value=0.62 Score=32.28 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=26.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 158 VFTQGGEMIDRIEYHVEHAVDYVQTATQDTK 188 (199)
Q Consensus 158 vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~ 188 (199)
.+..|||.|++||.+++........|...|.
T Consensus 49 ~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~ 79 (83)
T 1l4a_C 49 MLDEQGEQLDRIEEGLDQINQDMKDAEKNLE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577899999999999999998888876653
No 25
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=63.74 E-value=9.1 Score=24.63 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=26.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 160 TQGGEMIDRIEYHVEHAVDYVQTATQDTKK 189 (199)
Q Consensus 160 ~qqGe~iD~IE~NVe~a~~~v~~g~~eL~k 189 (199)
..|..+||.|+..|+.+...+..+...+.+
T Consensus 34 ~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 34 DTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999877764
No 26
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=61.20 E-value=13 Score=25.00 Aligned_cols=53 Identities=8% Similarity=0.116 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHhcCC---ccc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 141 TTTNEELEAMLDTGN---PAV---FTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKY 193 (199)
Q Consensus 141 e~sieEl~~m~~~~~---~~v---f~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~ 193 (199)
+...++|...+..+. ..| +..|..+||.|+..|+.+...+..+...+.+-.+-
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555553321 111 35679999999999999999999998888876654
No 27
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=57.07 E-value=10 Score=24.57 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=44.1
Q ss_pred HHhccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy14608 136 EITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199 (199)
Q Consensus 136 eI~~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qkk~RK 199 (199)
+|..++..+..|+.-+.+++ .+|.+=+.||..=..-|++...+|..+..++..|...=+++.|
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~-~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~k 68 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELH-DMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555666677777666665 5666557777777777788888888888888888777666654
No 28
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=53.87 E-value=16 Score=25.00 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=26.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 160 TQGGEMIDRIEYHVEHAVDYVQTATQDTKK 189 (199)
Q Consensus 160 ~qqGe~iD~IE~NVe~a~~~v~~g~~eL~k 189 (199)
..|..+||.|+..|+.+...+..+...+.+
T Consensus 53 d~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 53 DTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999877664
No 29
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=50.93 E-value=13 Score=23.77 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 160 TQGGEMIDRIEYHVEHAVDYVQTATQDTKK 189 (199)
Q Consensus 160 ~qqGe~iD~IE~NVe~a~~~v~~g~~eL~k 189 (199)
..|..+||.|+..|+.+...+..+...+.+
T Consensus 33 ~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 33 DEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557999999999999999999988776643
No 30
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=49.71 E-value=12 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 142 TTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKK 189 (199)
Q Consensus 142 ~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~k 189 (199)
..+..|..|=.+.+..+ ..|.++||.|+..|+.+...+..+++.+.+
T Consensus 37 ~~l~rLk~mA~~mg~El-d~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 37 SMIGNLRNMAIDMGNEI-GSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp TTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433223 667999999999999999999998877764
No 31
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=48.75 E-value=62 Score=22.13 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q psy14608 77 FVEVMTEYNRTQTD 90 (199)
Q Consensus 77 f~e~m~~yq~~Q~~ 90 (199)
|++.+..|+.++..
T Consensus 3 ~Q~~i~~f~~lq~~ 16 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQ 16 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666555
No 32
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=47.65 E-value=23 Score=22.84 Aligned_cols=30 Identities=3% Similarity=0.165 Sum_probs=26.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 159 FTQGGEMIDRIEYHVEHAVDYVQTATQDTK 188 (199)
Q Consensus 159 f~qqGe~iD~IE~NVe~a~~~v~~g~~eL~ 188 (199)
+..|+|.|.++..++..+..++..|..-|.
T Consensus 32 L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 32 LGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 367799999999999999999999987765
No 33
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=47.29 E-value=13 Score=23.94 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=37.7
Q ss_pred cCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy14608 140 RTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199 (199)
Q Consensus 140 ~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~qkk~RK 199 (199)
++..+..|+.-+.+++ .+|.+=+.||..=..-|++...+|..+..++..|...=+++.|
T Consensus 7 R~~~i~~ie~~i~eL~-~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 7 RESSIRQLEADIMDIN-EIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444556666666554 5665556677666666777777777777777777776665543
No 34
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=46.78 E-value=21 Score=23.11 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=25.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 160 TQGGEMIDRIEYHVEHAVDYVQTATQDTK 188 (199)
Q Consensus 160 ~qqGe~iD~IE~NVe~a~~~v~~g~~eL~ 188 (199)
..|-++||+|+..|+.+...+..++.-|.
T Consensus 34 d~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 34 DSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55689999999999999999998887765
No 35
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=42.89 E-value=14 Score=24.07 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=27.0
Q ss_pred ccCCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 139 GRTTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQ 194 (199)
Q Consensus 139 ~~e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~~q 194 (199)
.++..+..|+.-+.+++ .+|.+=+.||..=..-|++...+|..+..++..|...=
T Consensus 7 eR~~ei~~ie~~i~eL~-~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L 61 (69)
T 3b5n_B 7 ARHQELLKLEKSMAELT-QLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHT 61 (69)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443 34444345554444455555555555555555555443
No 36
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=41.49 E-value=58 Score=19.74 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 68 TQHSTLSRKFVEVMTEYNRTQTDYR 92 (199)
Q Consensus 68 ~q~~~L~~~f~e~m~~yq~~Q~~~~ 92 (199)
+-++.|-.+|.-.|.+|...|...+
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999999988754
No 37
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=39.80 E-value=20 Score=25.44 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 145 EELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALK 192 (199)
Q Consensus 145 eEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~ 192 (199)
.++..|+.+.+.++ +.=..-+++...||+.+...+.+|...=+++++
T Consensus 38 ~dla~lV~eQge~I-d~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk 84 (109)
T 3hd7_B 38 MDMAMLVESQGEMI-DRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 84 (109)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45666666544333 222455677888899999999988877766655
No 38
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=36.29 E-value=20 Score=23.75 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 145 EELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALK 192 (199)
Q Consensus 145 eEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~~ 192 (199)
.+|..|+.+.+.+| +.=..-++....||+.+...+.+|...-+++++
T Consensus 27 ~dla~lV~eQge~i-d~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 27 MDMAMLVESQGEMI-DRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45555665544333 221445567777788888888888776665543
No 39
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=35.90 E-value=73 Score=21.31 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 68 TQHSTLSRKFVEVMTEYNRTQTDYR 92 (199)
Q Consensus 68 ~q~~~L~~~f~e~m~~yq~~Q~~~~ 92 (199)
+.++.|-.+|.-+|.+|...|...+
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999999988744
No 40
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=31.49 E-value=26 Score=23.55 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14608 166 IDRIEYHVEHAVDYVQTATQD 186 (199)
Q Consensus 166 iD~IE~NVe~a~~~v~~g~~e 186 (199)
|+....||+.+...+.+|...
T Consensus 58 v~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 58 VEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555443
No 41
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=29.26 E-value=40 Score=19.77 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=19.2
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhc
Q psy14608 130 RIQRQLEITGRTTTNEELEAMLDT 153 (199)
Q Consensus 130 ~iqRq~eI~~~e~sieEl~~m~~~ 153 (199)
+..|..+-.+...|++||+.||-+
T Consensus 11 ~~~~ei~~RNrpltDEeLD~mLP~ 34 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEELDAMFPE 34 (39)
T ss_dssp HHHHHHHHTTCCCCHHHHHHTCCS
T ss_pred HhhccchhhcCCCCHHHHHHhCCC
Confidence 345666777889999999999975
No 42
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.29 E-value=1.6e+02 Score=20.21 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q psy14608 77 FVEVMTEYNRTQTD 90 (199)
Q Consensus 77 f~e~m~~yq~~Q~~ 90 (199)
+++.+..|+.++..
T Consensus 8 ~Q~~i~~~~~l~~~ 21 (117)
T 2zqm_A 8 VQAMLGQLESYQQQ 21 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555555
No 43
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=25.29 E-value=90 Score=20.06 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 145 EELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKAL 191 (199)
Q Consensus 145 eEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~g~~eL~kA~ 191 (199)
.+|..|+.+.+.+| +.=..-|++...||+.+...+.+|...-++++
T Consensus 23 ~dla~lV~eQge~i-d~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 68 (71)
T 2nps_B 23 KDLAMMIHDQGDLI-DSIEANVESSEVHVERASDQLQRAAYYQKKSR 68 (71)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45556665544333 22144567777888888888888877665544
Done!