Query psy14608
Match_columns 199
No_of_seqs 163 out of 689
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 16:05:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14608.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14608hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ez3a_ a.47.2.1 (A:) Syntaxin 99.3 1.2E-11 8.7E-16 91.6 9.9 87 11-99 34-124 (124)
2 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 99.0 2.5E-09 1.8E-13 82.7 10.7 101 61-161 77-195 (196)
3 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 97.1 0.026 1.9E-06 41.7 17.5 94 60-153 41-137 (196)
4 d1ez3a_ a.47.2.1 (A:) Syntaxin 92.8 0.94 6.9E-05 31.2 12.9 28 104-131 97-124 (124)
5 d1kxpd3 a.126.1.1 (D:405-473) 36.2 21 0.0015 22.0 3.7 29 121-153 12-40 (69)
6 d1jeqa1 a.140.2.1 (A:559-609) 7.7 2E+02 0.014 16.0 3.3 34 141-174 17-50 (51)
7 d1lr1a_ a.155.1.1 (A:) H1 prot 7.0 1.5E+02 0.011 17.2 2.4 27 133-160 11-37 (57)
8 d2ex3b1 a.263.1.1 (B:71-259) D 6.5 2.5E+02 0.018 19.6 3.9 41 142-182 140-183 (189)
9 d1h1js_ a.140.2.1 (S:) S/mar D 6.3 2.2E+02 0.016 15.3 4.0 35 141-175 7-41 (44)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 6.2 3.2E+02 0.023 16.9 8.1 25 163-187 64-88 (107)
No 1
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.27 E-value=1.2e-11 Score=91.59 Aligned_cols=87 Identities=60% Similarity=0.829 Sum_probs=71.8
Q ss_pred chhhcccchhhhhHHHhhcccchHHH----HHHHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 11 PQIIETRLIEQSIEQEEQSNKSSADL----RIRDTQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNR 86 (199)
Q Consensus 11 ~~~~~~~~~e~~~~~~~~~n~~~~dl----r~~~~~Lk~l~~~~~~~~~~~~~s~e~Ri~k~q~~~L~~~f~e~m~~yq~ 86 (199)
.++|+.|.++.+++.+++. ...++ +..+..|+.|...+...+..++++++.||+++|+.+|+.+|.++|.+||.
T Consensus 34 ~~~l~~~~~~~~~~~~l~~--~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~yq~ 111 (124)
T d1ez3a_ 34 SAILASPNPDEKTKEELEE--LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNA 111 (124)
T ss_dssp HHHHHCSSCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888876643 22333 33458999999988877777899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy14608 87 TQTDYRERCKGRI 99 (199)
Q Consensus 87 ~Q~~~~~k~k~r~ 99 (199)
+|..|+++|+.||
T Consensus 112 ~q~~yr~~~k~rI 124 (124)
T d1ez3a_ 112 TQSDYRERCKGRI 124 (124)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhcC
Confidence 9999998888764
No 2
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.95 E-value=2.5e-09 Score=82.73 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH-----HHHHHh-hhh-------h-h----HH
Q psy14608 61 ADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQRQLEISKKF-----VEVMTE-YNR-------T-Q----TD 122 (199)
Q Consensus 61 ~e~Ri~k~q~~~L~~~f~e~m~~yq~~Q~~~~~k~k~r~~rq~~i~~~~-----~e~~~e-~~~-------~-~----~~ 122 (199)
++.|++++++..|+..|..++..|+.+|..|.++++.++.|+..++++. .+.... .+. . . .+
T Consensus 77 ~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
T d1fioa_ 77 IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGE 156 (196)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHHHTC------C
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccchhhhHhhccccchHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999999988877531 111111 100 0 0 11
Q ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHhcCCcccccc
Q psy14608 123 YRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQ 161 (199)
Q Consensus 123 ~~e~~k~~iqRq~eI~~~e~sieEl~~m~~~~~~~vf~q 161 (199)
..........|+-+|..++.++.||++||.+++.+|..|
T Consensus 157 ~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ 195 (196)
T d1fioa_ 157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 222233344688899999999999999999987666544
No 3
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.14 E-value=0.026 Score=41.74 Aligned_cols=94 Identities=13% Similarity=0.232 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHH--HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14608 60 SADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG-RIQR--QLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQLE 136 (199)
Q Consensus 60 s~e~Ri~k~q~~~L~~~f~e~m~~yq~~Q~~~~~k~k~-r~~r--q~~i~~~~~e~~~e~~~~~~~~~e~~k~~iqRq~e 136 (199)
+.+.+-.+.....+...+......+...-......... ++.+ ...+...+.+.+..|+.++..|.+.++..+.|++.
T Consensus 41 ~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~ 120 (196)
T d1fioa_ 41 EEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM 120 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33434445566677666666655555544433322221 3322 33666778889999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHhc
Q psy14608 137 ITGRTTTNEELEAMLDT 153 (199)
Q Consensus 137 I~~~e~sieEl~~m~~~ 153 (199)
+.+++.+..+++..+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (196)
T d1fioa_ 121 IIQPEATEDEVEAAISD 137 (196)
T ss_dssp HHCTTCCHHHHHHHTSH
T ss_pred ccCCCccchhhhHhhcc
Confidence 99999999999998865
No 4
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=92.83 E-value=0.94 Score=31.20 Aligned_cols=28 Identities=79% Similarity=1.317 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy14608 104 EISKKFVEVMTEYNRTQTDYRERCKGRI 131 (199)
Q Consensus 104 ~i~~~~~e~~~e~~~~~~~~~e~~k~~i 131 (199)
.|.++|.+.|.+|+.++..|++.|+.+|
T Consensus 97 ~L~~kf~e~m~~yq~~q~~yr~~~k~rI 124 (124)
T d1ez3a_ 97 TLSRKFVEVMSEYNATQSDYRERCKGRI 124 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6667899999999999999999998754
No 5
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.23 E-value=21 Score=21.95 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhc
Q psy14608 121 TDYRERCKGRIQRQLEITGRTTTNEELEAMLDT 153 (199)
Q Consensus 121 ~~~~e~~k~~iqRq~eI~~~e~sieEl~~m~~~ 153 (199)
++|++++.+++.+ .-|++|..+|.+|++.
T Consensus 12 te~kkkL~e~lr~----k~P~as~~~l~~mVek 40 (69)
T d1kxpd3 12 TEYKKKLAERLKA----KLPDATPKELAKLVNK 40 (69)
T ss_dssp HHHHHHHHHHHHH----HCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hCCCCCHHHHHHHHHH
Confidence 4577777665443 4599999999999974
No 6
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.73 E-value=2e+02 Score=16.00 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHhcCCcccccchhhhHHHHHHHHH
Q psy14608 141 TTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVE 174 (199)
Q Consensus 141 e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe 174 (199)
..++.+|.+++...+..+----.++|++|..+++
T Consensus 17 kltV~~LK~~lk~~gL~~sGkKa~Li~Ri~~~l~ 50 (51)
T d1jeqa1 17 KFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ 50 (51)
T ss_dssp GCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhh
Confidence 3566777777765443332233788999988764
No 7
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=6.97 E-value=1.5e+02 Score=17.21 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=21.2
Q ss_pred HHHHHhccCCCHHHHHHHHhcCCccccc
Q psy14608 133 RQLEITGRTTTNEELEAMLDTGNPAVFT 160 (199)
Q Consensus 133 Rq~eI~~~e~sieEl~~m~~~~~~~vf~ 160 (199)
|-+.....+.|.+.|++|++.+. .|++
T Consensus 11 RsLRA~aRE~slE~LEe~lEKl~-~Vv~ 37 (57)
T d1lr1a_ 11 RTLRAQARESTLETLEEMLEKLE-VVVN 37 (57)
T ss_dssp HHHHHHTTTSCTHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH-HHHH
Confidence 56777788999999999999864 4443
No 8
>d2ex3b1 a.263.1.1 (B:71-259) DNA terminal protein {Bacteriophage phi-29 [TaxId: 10756]}
Probab=6.52 E-value=2.5e+02 Score=19.60 Aligned_cols=41 Identities=12% Similarity=0.299 Sum_probs=24.4
Q ss_pred CCHHHHHHHH---hcCCcccccchhhhHHHHHHHHHHHHHHHHH
Q psy14608 142 TTNEELEAML---DTGNPAVFTQGGEMIDRIEYHVEHAVDYVQT 182 (199)
Q Consensus 142 ~sieEl~~m~---~~~~~~vf~qqGe~iD~IE~NVe~a~~~v~~ 182 (199)
...++.-++| .+-...-|+..|+.+.+.|.+++....|+..
T Consensus 140 iPpDDFyElfli~~EISFE~FDSEg~~veasE~~l~ki~sYl~~ 183 (189)
T d2ex3b1 140 IPPDDFYELFLRISEISFEEFDSEGNTVENVEGNVYKILSYLEQ 183 (189)
T ss_dssp SCHHHHHHHHHHHTTTC-------CCCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhhhHhhcccccchHHhHHHHHHHHHHHHHH
Confidence 3444444444 3333344666799999999999999999975
No 9
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.30 E-value=2.2e+02 Score=15.27 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHhcCCcccccchhhhHHHHHHHHHH
Q psy14608 141 TTTNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEH 175 (199)
Q Consensus 141 e~sieEl~~m~~~~~~~vf~qqGe~iD~IE~NVe~ 175 (199)
..+..||.+++..-+..+----.++|++|+.+.+.
T Consensus 7 ~ltv~eLK~~lk~rgL~~sG~Ka~Li~RL~~~d~~ 41 (44)
T d1h1js_ 7 SLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEE 41 (44)
T ss_dssp GCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHHhhh
Confidence 45778888888875555544447899999887654
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.19 E-value=3.2e+02 Score=16.91 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14608 163 GEMIDRIEYHVEHAVDYVQTATQDT 187 (199)
Q Consensus 163 Ge~iD~IE~NVe~a~~~v~~g~~eL 187 (199)
++++..+..+++.....+..-..++
T Consensus 64 ~e~~~~l~~~~e~l~~~i~~l~~q~ 88 (107)
T d1fxka_ 64 DELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555555444443
Done!