RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14608
(199 letters)
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 78.2 bits (192), Expect = 7e-18
Identities = 95/174 (54%), Positives = 111/174 (63%), Gaps = 16/174 (9%)
Query: 41 TQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQ 100
++L+ IEQSIEQEE N+SSADLRIRKTQHSTLSRKFVEVM+EYN TQ+DYRERCKGRIQ
Sbjct: 91 SKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQ 150
Query: 101 RQLEISKKFVEVMTEYNRTQTDYRERCKGRI---------------QRQLEITGRTTTNE 145
RQLEI+ + + ++ I R EI +
Sbjct: 151 RQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIR 210
Query: 146 ELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199
EL M V +Q GEMIDRIEY+VEHAVDYV+ A DTKKA+KYQSKARR
Sbjct: 211 ELHDMFMDMAMLVESQ-GEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 263
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 68.3 bits (166), Expect = 3e-14
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
Query: 37 RIRDTQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCK 96
++ + E + S DLRIR++QHS+LSRKFV+VMT YN Q + + R
Sbjct: 107 DLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYG 166
Query: 97 GRIQRQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQL------------EITGRTTTN 144
+ RQ + + + + G +I +
Sbjct: 167 ENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSL 226
Query: 145 EELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKAR 198
EL M + V +Q GEMIDRIE+ VE + +YV+ AT+ +A YQ AR
Sbjct: 227 LELHEMFTDMSTLVASQ-GEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex;
1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A
3lg7_A*
Length = 127
Score = 62.7 bits (152), Expect = 3e-13
Identities = 50/60 (83%), Positives = 56/60 (93%)
Query: 41 TQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQ 100
++L+ IEQSIEQEE N+SSADLRIRKTQHSTLSRKFVEVM+EYN TQ+DYRERCKGRIQ
Sbjct: 68 SKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQ 127
>1s94_A S-syntaxin; three helix bundle, structural plasticity,
endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP:
a.47.2.1
Length = 180
Score = 60.5 bits (146), Expect = 6e-12
Identities = 48/68 (70%), Positives = 60/68 (88%)
Query: 41 TQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQ 100
+L+ IE +IEQEE SNKSSADLRIRKTQ+ST+SRKFVEVM++YN TQ DYR+RCK RI+
Sbjct: 99 GKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK 158
Query: 101 RQLEISKK 108
RQ+EI+ +
Sbjct: 159 RQMEITGR 166
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 53.2 bits (128), Expect = 7e-10
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 161 QGGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199
GEMIDRIEY+VEHAVDYV+ A DTKKA+KYQSKARR
Sbjct: 46 SQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 84
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
1hvv_A* 1urq_B
Length = 77
Score = 48.1 bits (115), Expect = 3e-08
Identities = 31/37 (83%), Positives = 34/37 (91%)
Query: 163 GEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199
GEMIDRIEY+VEHAVDYV+ A DTKKA+KYQSKARR
Sbjct: 37 GEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion,
snare complex, early endosomal snare complex, VTI1A,
VAMP4, transport protein; 2.50A {Rattus norvegicus}
Length = 71
Score = 48.0 bits (115), Expect = 3e-08
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 163 GEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 199
G++ID IE +VE + +V+ A+ ++A YQ K+R+
Sbjct: 33 GDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Length = 83
Score = 48.2 bits (115), Expect = 3e-08
Identities = 30/36 (83%), Positives = 33/36 (91%)
Query: 163 GEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKAR 198
GEMIDRIEY+VEHAVDYV+ A DTKKA+KYQSKAR
Sbjct: 48 GEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25,
SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A
{Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 69
Score = 43.4 bits (103), Expect = 1e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 163 GEMIDRIEYHVEHAVDYVQTATQDTKKALKYQ 194
E +D I+ +VE A V+ T KA+K
Sbjct: 37 QENVDVIDKNVEDAQLDVEQGVGHTDKAVKSA 68
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein;
2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 196
Score = 44.3 bits (104), Expect = 5e-06
Identities = 9/72 (12%), Positives = 30/72 (41%)
Query: 37 RIRDTQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCK 96
+ + + + + + ++ Q ++F++++ +Y ++Y+E K
Sbjct: 53 NFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENK 112
Query: 97 GRIQRQLEISKK 108
+ +RQ I +
Sbjct: 113 EQAKRQYMIIQP 124
Score = 42.0 bits (98), Expect = 3e-05
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 105 ISKKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGGE 164
++F++++ +Y ++Y+E K + +RQ I T +E+EA +
Sbjct: 89 SRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQAL 148
Query: 165 MIDRIEYHVEHAVDYVQ 181
+ + A+ VQ
Sbjct: 149 LNANRRGEAKTALAEVQ 165
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Length = 68
Score = 40.8 bits (96), Expect = 1e-05
Identities = 24/30 (80%), Positives = 27/30 (90%)
Query: 163 GEMIDRIEYHVEHAVDYVQTATQDTKKALK 192
GEMIDRIEY+VEHAVDYV+ A DTKKA+K
Sbjct: 39 GEMIDRIEYNVEHAVDYVERAVSDTKKAVK 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 2e-05
Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 63/211 (29%)
Query: 11 PQI-IETRLIEQSIEQEEQSNKSSADLRIRDTQLRMIEQSIEQEEQSNKSSADLRIRKTQ 69
P + ++E S+E E S L I + ++ + + + + I
Sbjct: 315 PNTSLPPSILEDSLENNE--GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---- 368
Query: 70 HSTL---SRKFV-----EVMTEYNRTQTDYRERC------KGRI---QRQLEISKKFVEV 112
+L ++ V + + N T R+ + RI +R+L+ S +F+ V
Sbjct: 369 --SLVNGAKNLVVSGPPQSLYGLNLT---LRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 113 MTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVF-TQGGE------- 164
+ ++ + I + L + ++++ P V+ T G
Sbjct: 424 ASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQI------P-VYDTFDGSDLRVLSG 473
Query: 165 -----MIDRI-EYHVE----------HAVDY 179
++D I V+ H +D+
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDF 504
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Mus musculus} SCOP:
h.1.15.1
Length = 65
Score = 38.8 bits (91), Expect = 6e-05
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 163 GEMIDRIEYHVEHAVDYVQTATQDTKKA 190
G++ID IE +VE A +VQ A Q +A
Sbjct: 36 GDVIDSIEANVESAEVHVQQANQQLSRA 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.004
Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 72/234 (30%)
Query: 6 KDRNVPQIIETRLIEQSIEQEEQS------NKSSAD-------LRIRDTQLRMIEQSIEQ 52
++P I+ + + I+ + S + + I L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--------- 433
Query: 53 EEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQT-DYRERCKGRIQ----------- 100
+L+++ L R V+ YN +T D + +
Sbjct: 434 ---------ELKVKLENEYALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 101 RQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQLEITG--RTTTNEELEAMLD------ 152
+ +E ++ T + D+R +++++ + L +
Sbjct: 482 KNIEHPERM----TLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 153 --TGNPAVFTQG-GEMIDRIEYHVEHAV-----DYVQTATQDTKKALKYQSKAR 198
N + + ++D + E+ + D ++ A +A+ ++ +
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI-FEEAHK 585
Score = 33.7 bits (76), Expect = 0.036
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 36/143 (25%)
Query: 61 ADLRIRKTQHST---LSRKFV-EVMTEYNRTQTDYRERCKGRI-----QRQLEISKKFVE 111
+ + Q LS++ + ++ + R + +Q E+ +KFVE
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR------LFWTLLSKQEEMVQKFVE 84
Query: 112 --VMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGGEMIDRI 169
+ Y + + + + T E L N VF +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQP-------SMMTRMYIEQRDRLYNDNQ-VFAK-------- 128
Query: 170 EYHV--EHAVDYVQTATQDTKKA 190
Y+V ++ A + + A
Sbjct: 129 -YNVSRLQPYLKLRQALLELRPA 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.58
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 20 EQSIEQEEQSNKSSADLRIRDTQLRM-IEQSIE 51
+Q++++ + S K AD D+ + I+ ++E
Sbjct: 19 KQALKKLQASLKLYAD----DSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 1.6
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 47 EQSIEQEEQSNK-----SSADLRIRKT 68
+Q++++ + S K S+ L I+ T
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription;
NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B
2l9s_B
Length = 89
Score = 26.8 bits (59), Expect = 1.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 90 DYRERCKGRIQRQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQLE 136
+Y + K R Q Q +I K F+E++ Y + Q + +E E
Sbjct: 15 NYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTE 61
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein,
isopeptide bond, protein binding; 2.05A {Mus musculus}
Length = 391
Score = 28.3 bits (62), Expect = 1.9
Identities = 11/94 (11%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 89 TDYRERCKGRIQRQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELE 148
+Y + +++ + + + +++E E + E C L + + T E +
Sbjct: 228 QNYMKYADAKLKEEEKRALRYLETRRE-CNSVEALMECC----VNALVTSFKETILAECQ 282
Query: 149 AMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQT 182
M+ ++D++ +E + ++
Sbjct: 283 GMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEE 316
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 27.9 bits (63), Expect = 2.1
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 120 QTDYRERCKGRIQRQLEITG-------RTTTNEELEAMLDT 153
Q R Q + G R +N +L ++T
Sbjct: 11 QQMGRGSENLYFQGNPILAGLGFSLPKRQVSNHDLVGRINT 51
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 452
Score = 27.5 bits (62), Expect = 2.9
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 123 YRERCKGRIQRQLEITG---RTTTNEELEAMLDTGNPAVFTQG 162
R++ R+ + +TG +T+ E A+L ++T G
Sbjct: 94 VRQQVPARV---VALTGSSGKTSVKEMTAAILSQCGNTLYTAG 133
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional
regulation, SIN3, PAH domains, protein-protein
interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB:
1pd7_A
Length = 85
Score = 26.0 bits (57), Expect = 3.7
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 90 DYRERCKGRIQRQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQ 134
Y + K R EI + F+E++ Y + Q + R + +
Sbjct: 12 SYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEE 56
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 27.0 bits (61), Expect = 3.8
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 7/24 (29%)
Query: 137 ITG-------RTTTNEELEAMLDT 153
I R TN + EA LDT
Sbjct: 4 ILALGAYVPERVMTNADFEAYLDT 27
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 26.7 bits (60), Expect = 4.7
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 7/24 (29%)
Query: 137 ITG-------RTTTNEELEAMLDT 153
+ G +N+ L A LDT
Sbjct: 8 VCGLGSYLPEAVLSNDMLAAELDT 31
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A
alanine ligase, MURF protein; HET: 1LG; 2.50A
{Streptococcus pneumoniae} PDB: 2am2_A*
Length = 454
Score = 27.2 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 123 YRERCKGRIQRQLEITG---RTTTNEELEAMLDTGNPAVFTQG 162
Y E+ + +TG +TTT + L +L T TQG
Sbjct: 94 YLEKTTVDV---FAVTGSNGKTTTKDMLAHLLSTRYKTYKTQG 133
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 26.8 bits (60), Expect = 5.1
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 140 RTTTNEELEAMLDT 153
T T++E+ L
Sbjct: 25 HTLTSKEINERLQP 38
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 26.7 bits (60), Expect = 5.8
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 7/24 (29%)
Query: 137 ITG-------RTTTNEELEAMLDT 153
I G + N E LDT
Sbjct: 5 IKGFGAYAPEKIIDNAYFEQFLDT 28
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 26.7 bits (60), Expect = 6.0
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 140 RTTTNEELEAMLDT 153
R TN+E+ +D+
Sbjct: 25 RVVTNDEICQHIDS 38
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 26.1 bits (58), Expect = 6.3
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 138 TGRTTTNEELEAMLDTGNPAVFTQG-GEMIDRIEYHVE 174
T + E+ + G PA+F G + + +E H+
Sbjct: 36 TLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLL 73
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 47
Score = 24.2 bits (52), Expect = 6.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 130 RIQRQLEITGRTTTNEELEAMLDTG 154
R +R+++ R ++EEL+AM G
Sbjct: 10 RWEREIDERNRPLSDEELDAMFPEG 34
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 26.3 bits (59), Expect = 6.8
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 140 RTTTNEELEAMLDT 153
R +N+E+ +D+
Sbjct: 24 REVSNKEVCTWIDS 37
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription
repressor; NMR {Mus musculus} SCOP: a.59.1.1
Length = 105
Score = 25.3 bits (55), Expect = 7.2
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 90 DYRERCKGRIQRQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQ 134
Y + K R EI + F+E++ Y + Q + R + +
Sbjct: 12 SYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEE 56
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 26.4 bits (59), Expect = 7.2
Identities = 2/11 (18%), Positives = 3/11 (27%)
Query: 143 TNEELEAMLDT 153
N+ D
Sbjct: 32 DNDYFVERFDA 42
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 25.9 bits (58), Expect = 8.4
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 137 ITG-------RTTTNEELEAMLDT 153
I G TN +LE ++DT
Sbjct: 5 IIGTGVYLPKNVLTNFDLEKIVDT 28
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 25.9 bits (58), Expect = 9.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 143 TNEELEAMLDT 153
TN +L M+DT
Sbjct: 20 TNHQLSEMMDT 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.126 0.330
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,738,194
Number of extensions: 153032
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 60
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.7 bits)