RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14608
         (199 letters)



>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 65.3 bits (159), Expect = 1e-14
 Identities = 49/59 (83%), Positives = 55/59 (93%)

Query: 41  TQLRMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRI 99
           ++L+ IEQSIEQEE  N+SSADLRIRKTQHSTLSRKFVEVM+EYN TQ+DYRERCKGRI
Sbjct: 66  SKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 124


>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 196

 Score = 33.6 bits (76), Expect = 0.008
 Identities = 9/63 (14%), Positives = 29/63 (46%)

Query: 44  RMIEQSIEQEEQSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQRQL 103
            +  +   + + + +       ++ Q     ++F++++ +Y    ++Y+E  K + +RQ 
Sbjct: 60  DLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQY 119

Query: 104 EIS 106
            I 
Sbjct: 120 MII 122



 Score = 33.2 bits (75), Expect = 0.013
 Identities = 17/85 (20%), Positives = 36/85 (42%)

Query: 105 ISKKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGGE 164
             ++F++++ +Y    ++Y+E  K + +RQ  I     T +E+EA +             
Sbjct: 89  SRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQAL 148

Query: 165 MIDRIEYHVEHAVDYVQTATQDTKK 189
           +        + A+  VQ   Q+  K
Sbjct: 149 LNANRRGEAKTALAEVQARHQELLK 173


>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 89

 Score = 27.2 bits (60), Expect = 0.47
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 90  DYRERCKGRIQRQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQ 134
           +Y  + K R Q Q +I K F+E++  Y + Q + +E         
Sbjct: 15  NYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPAL 59


>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 85

 Score = 26.0 bits (57), Expect = 1.4
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 90  DYRERCKGRIQRQLEISKKFVEVMTEYNRTQTDYRERCKGRIQRQ 134
            Y  + K R     EI + F+E++  Y + Q   + R    +  +
Sbjct: 12  SYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEE 56


>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 184

 Score = 26.0 bits (56), Expect = 2.9
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 143 TNEELEAMLDTGNPAVFTQGGEMIDRIEYHVEHAVDYVQTATQDTKKA 190
           TN+E+   +D+ +  ++T+ G    R     E A      A +     
Sbjct: 28  TNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSN 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.126    0.330 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,292
Number of extensions: 27888
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 13
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.5 bits)