BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14609
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 112/161 (69%)
Query: 8 IVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYR 67
+++WR + Q + GF+E++ L+ +FD ELEL++ G ++D+ DW +T+Y+
Sbjct: 222 VIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKYK 281
Query: 68 SGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
+GY H VIQWFW+A+ +E+R+RLLQFVTGTS VP GF+ L GS GP+ F +E+W
Sbjct: 282 NGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQW 341
Query: 128 GKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTF 168
G P LPRAHTCFNRLDLPPY + E L++KL +A+E T F
Sbjct: 342 GTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAIENTQGF 382
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 113/166 (68%), Gaps = 1/166 (0%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTE 65
+ + WRL RGV +QT++ GF E++ + + FDA+ELE+++ G EIDL DW +
Sbjct: 234 RMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAI 293
Query: 66 YRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIE 125
YR Y I WFWQ ++ NE+R+RLLQFVTGT +P GF+ L GS GP+KFCIE
Sbjct: 294 YRR-YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIE 352
Query: 126 KWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTFGIE 171
K GK N LPR+HTCFNRLDLPPY + E L EKLL A+EET FG E
Sbjct: 353 KVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE 398
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 182 bits (462), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 109/161 (67%)
Query: 8 IVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYR 67
+++WR V Q + + GF E++ L+ +FD ELEL++ G ++D+ DW ++ Y+
Sbjct: 221 VIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYK 280
Query: 68 SGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
+GY HPVIQWFW+A+ E+R+RLLQFVTGTS VP GF+ L GS GP+ F IE+W
Sbjct: 281 NGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQW 340
Query: 128 GKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTF 168
G P LPRAHT FNRLDLPPY T E L EKLL+AVE F
Sbjct: 341 GSPEKLPRAHTAFNRLDLPPYETFEDLREKLLMAVENAQGF 381
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 109/161 (67%)
Query: 8 IVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYR 67
+++WR V Q + + GF E++ L+ +FD ELEL++ G ++D+ DW ++ Y+
Sbjct: 221 VIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYK 280
Query: 68 SGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
+GY HPVIQWFW+A+ E+R+RLLQFVTGTS VP GF+ L GS GP+ F IE+W
Sbjct: 281 NGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQW 340
Query: 128 GKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTF 168
G P LPRAHT FNRLDLPPY T E L EKLL+AVE F
Sbjct: 341 GSPEKLPRAHTSFNRLDLPPYETFEDLREKLLMAVENAQGF 381
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 180 bits (457), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 107/156 (68%)
Query: 8 IVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYR 67
+++WR V Q + + GF E++ L+ +FD ELEL+ G ++D+ DW ++ Y+
Sbjct: 236 VIQWRFVNRVQKQXNAFLEGFTELLPIDLIKIFDENELELLXCGLGDVDVNDWRQHSIYK 295
Query: 68 SGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
+GY HPVIQWFW+A+ E+R+RLLQFVTGTS VP GF+ L GS GP+ F IE+W
Sbjct: 296 NGYCPNHPVIQWFWKAVLLXDAEKRIRLLQFVTGTSRVPXNGFAELYGSNGPQLFTIEQW 355
Query: 128 GKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVE 163
G P LPRAHTCFNRLDLPPY T E L EKLL AVE
Sbjct: 356 GSPEKLPRAHTCFNRLDLPPYETFEDLREKLLXAVE 391
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 179 bits (453), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 10 RWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSG 69
+WR+ V +Q ++ + GF E++ LV+VFD RELEL+I G AEID+ DW +T+YR G
Sbjct: 269 QWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYR-G 327
Query: 70 YHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGK 129
Y + VIQWFW+ + + NEQR RLLQF TGTS +P GF L+GS GPR+F IEK G+
Sbjct: 328 YQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAGE 387
Query: 130 PNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTFGIE 171
LP++HTCFNR+DLP Y + + +KL LAVEET FG E
Sbjct: 388 VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQE 429
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 8 IVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYR 67
+ WR RGV +QT++ + GF EVV + + FD +ELE+++ G E+DL DW NT YR
Sbjct: 217 MTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYR 276
Query: 68 SGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
+ +I WFWQ ++ NE R+RLLQFVTGT +P GF+ L GS GP+KFCIEK
Sbjct: 277 HYTRNSKQII-WFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKV 335
Query: 128 GKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEET 165
GK LPR+HTCFNRLDLPPY + E L EKLL A+EET
Sbjct: 336 GKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
Query: 9 VRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRS 68
V WR RG+ Q +L +GF EV+ L+ FD +ELEL+I G +ID+ DW NT +
Sbjct: 218 VNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKH 277
Query: 69 GYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWG 128
D + +++WFW+A+E F E+R RLLQFVTG+S VP +GF AL+G+ GPR F I +
Sbjct: 278 CTPDSN-IVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQID 336
Query: 129 K-PNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTFGIE 171
N+LP+AHTCFNR+D+PPY + E LYEKLL A+EET F +E
Sbjct: 337 ACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 103/165 (62%), Gaps = 3/165 (1%)
Query: 8 IVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYR 67
+ + R+ + Q + + GFYE++ RL+S+F +ELEL+I+G ID+ D SNTEY
Sbjct: 241 VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH 300
Query: 68 SGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
Y IQWFW+A+ F R + LQFVTGTS VP +GF+AL G G +KF I +
Sbjct: 301 K-YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRD 359
Query: 128 GKP-NSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNT-FGI 170
+ + LP AHTCFN+LDLP Y + E L LLLA++E + FG+
Sbjct: 360 DRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGL 404
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 103/165 (62%), Gaps = 3/165 (1%)
Query: 8 IVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYR 67
+ + R+ + Q + + GFYE++ RL+S+F +ELEL+I+G ID+ D SNTEY
Sbjct: 224 VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH 283
Query: 68 SGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
Y IQWFW+A+ F R + LQFVTGTS VP +GF+AL G G +KF I +
Sbjct: 284 K-YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRD 342
Query: 128 GKP-NSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEE-TNTFGI 170
+ + LP AHTCFN+LDLP Y + E L LLLA++E + FG+
Sbjct: 343 DRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGL 387
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 4 SRKRIVR----WRLERGVADQTESLVRGFYEVVDPR-LVSVFDARELELVIAGTAEIDLG 58
+RK V + L + V Q ++ RGF+ V + L +F E+EL+I G+ +D
Sbjct: 192 NRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQ 251
Query: 59 DWASNTEYRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTG 118
TEY GY +I+ FW+ + FT+EQ+ LQF TGT P G G
Sbjct: 252 ALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPV-------GGLG 304
Query: 119 PRKFCIEKWGKPNS--LPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTFGI 170
K I K G P++ LP +HTCFN L LP Y + E L E+LL A+ FG+
Sbjct: 305 KLKMIIAKNG-PDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGM 357
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 78 QWFWQAIERFTNEQRLRLLQFVTGTSSVPY--EGFSALRGSTGPRKFCIEKWGKPNSLPR 135
+WFW +E+ + +R L+ F T + S+P EGF + T + LP
Sbjct: 31 RWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITI-------RPPDDQHLPT 83
Query: 136 AHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTFG 169
A+TC +RL +P Y + ++L +KLLLA+ +T FG
Sbjct: 84 ANTCISRLYVPLYSSKQILKQKLLLAI-KTKNFG 116
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 70 YHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGK 129
YHDG V + F +A+E FT L T S+ + A RG+ K + + K
Sbjct: 120 YHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL----YDAGRGTPKDLKKALASYDK 175
Query: 130 PNSLPRAHTCFNRLDL 145
L + CFN ++
Sbjct: 176 ACDLKDSPGCFNAGNM 191
>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWAS 62
KRI +R + DQ L G +EV+ R S+FDA+E + G+ + + D S
Sbjct: 36 KRIPGFR-DLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLGSKKYSVDDLHS 91
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 62 SNTEYRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRK 121
S + G P + WFW F N + L Q +V + G A R G +
Sbjct: 13 SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI-ATRADVGAMQ 71
Query: 122 FCIEKW 127
+ K+
Sbjct: 72 SFVSKY 77
>pdb|1HZH|H Chain H, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|K Chain K, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
Length = 457
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 119 PRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVL 154
P ++K +P S + HTC PP P PE+L
Sbjct: 216 PSNTKVDKKAEPKSCDKTHTC------PPCPAPELL 245
>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARE 44
KRI +R + DQ L G +EV+ R S+FDA+E
Sbjct: 41 KRIPGFR-DLSQHDQVNLLKAGTFEVLXVRFASLFDAKE 78
>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARE 44
KRI +R + DQ L G +EV+ R S+FDA+E
Sbjct: 36 KRIPGFR-DLSQHDQVNLLKAGTFEVLXVRFASLFDAKE 73
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 46 ELVIAGTAEIDLGDWASNTEYR 67
EL + A++DLGD+AS+T ++
Sbjct: 152 ELTLEVNAKVDLGDYASDTRFQ 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,634,670
Number of Sequences: 62578
Number of extensions: 234589
Number of successful extensions: 478
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 19
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)