Query psy14609
Match_columns 171
No_of_seqs 132 out of 1077
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 16:06:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00119 HECTc Domain Homolo 100.0 5.1E-55 1.1E-59 364.8 15.7 165 1-170 170-335 (336)
2 COG5021 HUL4 Ubiquitin-protein 100.0 6.8E-55 1.5E-59 394.1 14.4 170 1-171 701-872 (872)
3 cd00078 HECTc HECT domain; C-t 100.0 5.1E-54 1.1E-58 360.8 15.0 164 1-169 188-352 (352)
4 PF00632 HECT: HECT-domain (ub 100.0 5.8E-52 1.3E-56 343.1 12.9 165 1-170 148-316 (317)
5 KOG0941|consensus 100.0 3.7E-48 7.9E-53 342.3 13.0 163 2-171 687-850 (850)
6 KOG0939|consensus 100.0 4.9E-48 1.1E-52 335.9 12.3 168 2-170 550-719 (720)
7 KOG0942|consensus 100.0 3.8E-47 8.1E-52 337.3 10.0 165 1-170 834-1000(1001)
8 KOG0170|consensus 100.0 1.7E-46 3.7E-51 317.3 11.9 170 1-170 448-620 (621)
9 KOG4427|consensus 100.0 9E-42 2E-46 298.4 12.6 168 3-170 906-1095(1096)
10 KOG0940|consensus 100.0 2E-29 4.3E-34 210.7 11.4 160 2-163 199-358 (358)
11 KOG0943|consensus 100.0 7.9E-30 1.7E-34 230.8 7.0 164 1-170 2847-3014(3015)
12 PF12449 DUF3684: Protein of u 49.6 38 0.00083 33.1 5.5 113 30-162 474-601 (1093)
13 PF02758 PYRIN: PAAD/DAPIN/Pyr 42.8 40 0.00086 22.2 3.4 30 79-108 4-38 (83)
14 COG4106 Tam Trans-aconitate me 41.1 16 0.00035 29.3 1.5 61 39-102 164-229 (257)
15 PHA02568 J baseplate assembly 40.7 42 0.00091 27.9 3.9 65 86-165 71-135 (300)
16 PHA02681 ORF089 virion membran 39.6 25 0.00053 23.7 1.9 21 85-105 50-70 (92)
17 PF13257 DUF4048: Domain of un 36.8 66 0.0014 26.2 4.3 42 13-64 82-123 (253)
18 PF13945 NST1: Salt tolerance 27.6 52 0.0011 25.6 2.3 20 75-97 105-124 (190)
19 PLN00078 photosystem I reactio 26.8 38 0.00083 23.8 1.3 27 85-111 29-55 (122)
20 cd08321 Pyrin_ASC-like Pyrin D 23.7 1E+02 0.0022 20.3 2.9 33 79-111 3-40 (82)
21 PF04472 DUF552: Protein of un 22.8 43 0.00092 21.5 0.9 28 84-111 29-56 (73)
22 COG5494 Predicted thioredoxin/ 22.6 44 0.00095 26.7 1.0 45 18-62 47-99 (265)
23 PF12644 DUF3782: Protein of u 21.1 1.6E+02 0.0034 18.0 3.3 14 19-32 46-59 (64)
24 KOG1108|consensus 20.9 73 0.0016 25.7 2.0 13 130-142 268-280 (281)
No 1
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=5.1e-55 Score=364.81 Aligned_cols=165 Identities=49% Similarity=0.899 Sum_probs=157.9
Q ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHH
Q psy14609 1 MYHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWF 80 (171)
Q Consensus 1 v~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~f 80 (171)
++|||+++++|++.++++.|++|||+||++|+|.+.+++|+|+||+.++||.++||+++|++++.|.+||+++++.|+||
T Consensus 170 ~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~~~~~i~~F 249 (336)
T smart00119 170 KKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYSENSQTIKWF 249 (336)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCCCCCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCC-CCCCCceeccccceeecCCCCCHHHHHHHHH
Q psy14609 81 WQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWG-KPNSLPRAHTCFNRLDLPPYPTPEVLYEKLL 159 (171)
Q Consensus 81 w~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~-~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~ 159 (171)
|+++++||+++|++||+|+||++++|++|++.+++ ++++...+ ++++||+||||||+|+||.|+|+|+|++||+
T Consensus 250 w~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~-----~~~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~ 324 (336)
T smart00119 250 WEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSP-----KFTIRKAGSDDDRLPTAHTCFNRLKLPPYSSKEILREKLL 324 (336)
T ss_pred HHHHHHCCHHHHHHhheeccCCCCCCCCchhhcCC-----ceEEEECCCCCCCCCccccccCcCcCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998864 56776654 5789999999999999999999999999999
Q ss_pred HHHHhcCCCcC
Q psy14609 160 LAVEETNTFGI 170 (171)
Q Consensus 160 ~Ai~~~~gFgl 170 (171)
+||++|+||||
T Consensus 325 ~AI~~~~gF~l 335 (336)
T smart00119 325 LAINEGKGFGL 335 (336)
T ss_pred HHHHcCCCCCC
Confidence 99999999997
No 2
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-55 Score=394.09 Aligned_cols=170 Identities=49% Similarity=0.890 Sum_probs=165.1
Q ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCc-cccccccccceecCCCCCCChhHHH
Q psy14609 1 MYHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAE-IDLGDWASNTEYRSGYHDGHPVIQW 79 (171)
Q Consensus 1 v~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~-id~~~l~~~~~~~~g~~~~~~~v~~ 79 (171)
+.|||+++++|++..+|++|++||..||.+|||..++.+|+++||+.|+||.++ ||+++||++|.|. ||++++++|.|
T Consensus 701 k~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~-GY~~~s~~I~w 779 (872)
T COG5021 701 KKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYH-GYTEDSPIIVW 779 (872)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhccccc-ccccCCcHHHH
Confidence 469999999999999999999999999999999999999999999999999998 9999999999996 89999999999
Q ss_pred HHHHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCCC-CCCceeccccceeecCCCCCHHHHHHHH
Q psy14609 80 FWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGKP-NSLPRAHTCFNRLDLPPYPTPEVLYEKL 158 (171)
Q Consensus 80 fw~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~~-~~LP~a~TC~~~L~LP~Y~s~e~l~~kL 158 (171)
||+++++|+.++|++||||+||++++|++||+.+.++.++++|+|++.+.+ ++||+||||||+|+||.|+|||.|++||
T Consensus 780 FWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL 859 (872)
T COG5021 780 FWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKL 859 (872)
T ss_pred HHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeecCCCccccCCchhhhhhhccCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765 5699999999999999999999999999
Q ss_pred HHHHHhcCCCcCC
Q psy14609 159 LLAVEETNTFGIE 171 (171)
Q Consensus 159 ~~Ai~~~~gFgl~ 171 (171)
++||++|+|||+.
T Consensus 860 ~~AI~Eg~GFg~~ 872 (872)
T COG5021 860 LTAINEGAGFGLL 872 (872)
T ss_pred HHHHHhccCcCcC
Confidence 9999999999984
No 3
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=5.1e-54 Score=360.76 Aligned_cols=164 Identities=48% Similarity=0.875 Sum_probs=156.8
Q ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHH
Q psy14609 1 MYHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWF 80 (171)
Q Consensus 1 v~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~f 80 (171)
++|||+++++|+++++++.|++|||+||++|+|...+++|+|+||+.++||.++||+++|++++.|.+||+.++++|+||
T Consensus 188 ~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~~~~~~~~~~i~~F 267 (352)
T cd00078 188 KEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYSSDSPTIQWF 267 (352)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEecCCCCCCCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCC-CCCCceeccccceeecCCCCCHHHHHHHHH
Q psy14609 81 WQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGK-PNSLPRAHTCFNRLDLPPYPTPEVLYEKLL 159 (171)
Q Consensus 81 w~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~-~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~ 159 (171)
|+++++||+++|++||+|+||++++|++|++++++ ++++.+.+. +++||+||||||+|+||.|+|+|+|++||+
T Consensus 268 w~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~-----~i~i~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~ 342 (352)
T cd00078 268 WEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNP-----KFTIRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLL 342 (352)
T ss_pred HHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCC-----CeEEEECCCCCCCCCcchhhhccccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998863 567776554 889999999999999999999999999999
Q ss_pred HHHHhcCCCc
Q psy14609 160 LAVEETNTFG 169 (171)
Q Consensus 160 ~Ai~~~~gFg 169 (171)
+||++|+|||
T Consensus 343 ~AI~~~~gF~ 352 (352)
T cd00078 343 YAINEGAGFG 352 (352)
T ss_pred HHHHcCCCCC
Confidence 9999999997
No 4
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=5.8e-52 Score=343.14 Aligned_cols=165 Identities=44% Similarity=0.806 Sum_probs=144.3
Q ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCc-cccccccccceecCCCCCCChhHHH
Q psy14609 1 MYHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAE-IDLGDWASNTEYRSGYHDGHPVIQW 79 (171)
Q Consensus 1 v~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~-id~~~l~~~~~~~~g~~~~~~~v~~ 79 (171)
+++||+++++|++.++++.|++|||+||.+|+|...+++|+|+||+.++||.++ +|+++|++++.|++||++++++++|
T Consensus 148 ~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~ 227 (317)
T PF00632_consen 148 KEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQW 227 (317)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHH
T ss_pred hhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccccceeeE
Confidence 379999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCC--CCCCceeccccceeecCCCCCHHHHHHH
Q psy14609 80 FWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGK--PNSLPRAHTCFNRLDLPPYPTPEVLYEK 157 (171)
Q Consensus 80 fw~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~--~~~LP~a~TC~~~L~LP~Y~s~e~l~~k 157 (171)
||+++++||+++|++||+|+||++++|++|++.+.+ +++|...+. +++||+||||||+|+||.|+|+|+|++|
T Consensus 228 fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~-----~i~i~~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~k 302 (317)
T PF00632_consen 228 FWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNP-----KITIQFSDDSPDDRLPTAHTCFNTLKLPRYSSKEILREK 302 (317)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE------EEEEEEESC-STTS--EEEGGGTEEEEEE-SSHHHHHHH
T ss_pred EeeeeccCCHHHhheeEEEecCCCCCCccccccccc-----eeEEeecCCCccccCceecCcCCEEECCCCCCHHHHHHH
Confidence 999999999999999999999999999999998753 577776554 6899999999999999999999999999
Q ss_pred HHHHHHhc-CCCcC
Q psy14609 158 LLLAVEET-NTFGI 170 (171)
Q Consensus 158 L~~Ai~~~-~gFgl 170 (171)
|++||+++ +||||
T Consensus 303 L~~Ai~~~~~gF~~ 316 (317)
T PF00632_consen 303 LLYAIENGQEGFGL 316 (317)
T ss_dssp HHHHHHHT------
T ss_pred HHHHHHcCCCCcCc
Confidence 99999999 89997
No 5
>KOG0941|consensus
Probab=100.00 E-value=3.7e-48 Score=342.25 Aligned_cols=163 Identities=40% Similarity=0.727 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
+|||+++++|.++.+|++|++||++||+.|+..+.+.+|.|+||+.++||+.++||+.|++.+.|++||+++||+|+|||
T Consensus 687 ~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FW 766 (850)
T KOG0941|consen 687 REFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYTSDSPTIQWFW 766 (850)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceecCcccCCChHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCC-CCCCceeccccceeecCCCCCHHHHHHHHHH
Q psy14609 82 QAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGK-PNSLPRAHTCFNRLDLPPYPTPEVLYEKLLL 160 (171)
Q Consensus 82 ~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~-~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~ 160 (171)
++++.||.++|++||+|+||++|+|++|++.+ ++.|...++ .++||+||||||.|.||.|+|+|.|++||++
T Consensus 767 e~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l-------~~~i~~~~~~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~ 839 (850)
T KOG0941|consen 767 EIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL-------KLVIQKNGPDEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLT 839 (850)
T ss_pred HHHHhCCHHHhhhheEeecCCCccccCChhhc-------eEEEecCCCCcccCcchhhhhhhhhccccCcHHHHHHHHHH
Confidence 99999999999999999999999999999988 477887765 5899999999999999999999999999999
Q ss_pred HHHhcCCCcCC
Q psy14609 161 AVEETNTFGIE 171 (171)
Q Consensus 161 Ai~~~~gFgl~ 171 (171)
||++++|||+.
T Consensus 840 Ai~~~~GF~l~ 850 (850)
T KOG0941|consen 840 AINNTEGFGLL 850 (850)
T ss_pred HHHhccCcCCC
Confidence 99999999983
No 6
>KOG0939|consensus
Probab=100.00 E-value=4.9e-48 Score=335.85 Aligned_cols=168 Identities=46% Similarity=0.800 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
.|||+++++++|.+++++|++||.+||++++|..++++|+++||+.|+||.++||++||++++.|. ||+.++++++|||
T Consensus 550 ~~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~-~~~~~~~~i~wFW 628 (720)
T KOG0939|consen 550 QEYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYL-GYTKASSVIQWFW 628 (720)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhh-cccccchHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred HHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCC-CCCCCceeccccceeecCCCCCHHHHHHHHHH
Q psy14609 82 QAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWG-KPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLL 160 (171)
Q Consensus 82 ~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~-~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~ 160 (171)
++++++++++|.+||+|+||++++|++||..+.+.+|+.+|.|.... ..++||+||||||+|.||.|.|||.++++|+.
T Consensus 629 rav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~s~d~LP~ahTCfnqL~LP~Y~Sye~l~~~Lll 708 (720)
T KOG0939|consen 629 RAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPGSTDRLPTAHTCFNQLFLPHYASYEQLRESLLL 708 (720)
T ss_pred HHHhhhcHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCCCCCCCcchhhhhhhhcCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999998899999998876 67999999999999999999999999999999
Q ss_pred HHHhc-CCCcC
Q psy14609 161 AVEET-NTFGI 170 (171)
Q Consensus 161 Ai~~~-~gFgl 170 (171)
||.+| .|||+
T Consensus 709 Ai~E~segfg~ 719 (720)
T KOG0939|consen 709 AINEGSEGFGM 719 (720)
T ss_pred HHHhhhhccCc
Confidence 99998 59996
No 7
>KOG0942|consensus
Probab=100.00 E-value=3.8e-47 Score=337.33 Aligned_cols=165 Identities=36% Similarity=0.720 Sum_probs=158.7
Q ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCC-ccccccccccceecCCCCCCChhHHH
Q psy14609 1 MYHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTA-EIDLGDWASNTEYRSGYHDGHPVIQW 79 (171)
Q Consensus 1 v~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~-~id~~~l~~~~~~~~g~~~~~~~v~~ 79 (171)
|=+||++|++|+|+.+++.|..||++||..|||++++.+|++.||+.|+.|.+ .||++||+++|.|.+||+++||++.+
T Consensus 834 vi~YihLVsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~ 913 (1001)
T KOG0942|consen 834 VIEYIHLVSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVM 913 (1001)
T ss_pred hhhhhHHhhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhH
Confidence 34899999999999999999999999999999999999999999999999985 59999999999999999999999999
Q ss_pred HHHHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCC-CCCCCceeccccceeecCCCCCHHHHHHHH
Q psy14609 80 FWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWG-KPNSLPRAHTCFNRLDLPPYPTPEVLYEKL 158 (171)
Q Consensus 80 fw~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~-~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL 158 (171)
||+|+++|+.|+|++||+|+||++|.|+.||+.+.| +|+|...+ ++++||||+||.|.|+||.|++++.|++||
T Consensus 914 FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~P-----~FcI~n~gsd~~RLPTASTCmNLLKLP~y~~kt~LreKL 988 (1001)
T KOG0942|consen 914 FWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALDP-----AFCIRNAGSDDDRLPTASTCMNLLKLPPYSNKTLLREKL 988 (1001)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcccccchhcCc-----cceeeeCCCccccCCcHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999999999999986 68898877 568999999999999999999999999999
Q ss_pred HHHHHhcCCCcC
Q psy14609 159 LLAVEETNTFGI 170 (171)
Q Consensus 159 ~~Ai~~~~gFgl 170 (171)
++||+-+.||+|
T Consensus 989 lYAI~sgAGFeL 1000 (1001)
T KOG0942|consen 989 LYAINSGAGFEL 1000 (1001)
T ss_pred HHHHhcccCCCC
Confidence 999999999997
No 8
>KOG0170|consensus
Probab=100.00 E-value=1.7e-46 Score=317.34 Aligned_cols=170 Identities=28% Similarity=0.459 Sum_probs=155.0
Q ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCC-CccccccccccceecCCCCCCChhHHH
Q psy14609 1 MYHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGT-AEIDLGDWASNTEYRSGYHDGHPVIQW 79 (171)
Q Consensus 1 v~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~-~~id~~~l~~~~~~~~g~~~~~~~v~~ 79 (171)
|||||+.|+++.+.++|++|++|||.||.+|+|.+.|++|+|+||..|+||. ..++++.|-.|+.++|||+.++|.|+.
T Consensus 448 leEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~ 527 (621)
T KOG0170|consen 448 LEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHD 527 (621)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCccCCCcHHHH
Confidence 6899999999999999999999999999999999999999999999999998 459999999999999999999999999
Q ss_pred HHHHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceee-cCCCCCCCceeccccceeecCCCCCHHHHHHHH
Q psy14609 80 FWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIE-KWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKL 158 (171)
Q Consensus 80 fw~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~-~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL 158 (171)
|.+++.+|+.+|||.||+|+||+++||+|||+.++|+..+.+-..+ ...+|+.||+++||.|+|+||.|+|+|+|++||
T Consensus 528 li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP~YSSkEiM~~kL 607 (621)
T KOG0170|consen 528 LISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAEDSETPDDYLPSVMTCANYLKLPPYSSKEIMRSKL 607 (621)
T ss_pred HHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCCCCCcccccchHHHHHhhhcCCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999874322111111 123478999999999999999999999999999
Q ss_pred HHHHHhcCC-CcC
Q psy14609 159 LLAVEETNT-FGI 170 (171)
Q Consensus 159 ~~Ai~~~~g-Fgl 170 (171)
.+||++++| |.|
T Consensus 608 ~~Ai~EGqgSFhL 620 (621)
T KOG0170|consen 608 LYAIEEGQGSFHL 620 (621)
T ss_pred HHHHHcccccccc
Confidence 999999975 876
No 9
>KOG4427|consensus
Probab=100.00 E-value=9e-42 Score=298.43 Aligned_cols=168 Identities=38% Similarity=0.679 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCC-CccccccccccceecCCCCCCChhHHHHH
Q psy14609 3 HSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGT-AEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 3 eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~-~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
.||..++.|+|+.++++|..||-+||.+++.+++|++|+|.||+.|+.|. .+||++||++||.|-|||..+|++|+|||
T Consensus 906 ~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlW 985 (1096)
T KOG4427|consen 906 QYIHAMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLW 985 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHH
Confidence 69999999999999999999999999999999999999999999999997 68999999999999999999999999999
Q ss_pred HHHhh-CCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCc--------------------ceeecCCCCCCCceecccc
Q psy14609 82 QAIER-FTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRK--------------------FCIEKWGKPNSLPRAHTCF 140 (171)
Q Consensus 82 ~vl~~-~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~--------------------~~~~~~~~~~~LP~a~TC~ 140 (171)
++++. |++|||..||+|+|.|+|.|+-||+-+.|....+= +.+.+..+.++||+|+|||
T Consensus 986 dIl~~dFt~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCf 1065 (1096)
T KOG4427|consen 986 DILAGDFTPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCF 1065 (1096)
T ss_pred HHHhccCChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHH
Confidence 99996 99999999999999999999999999987433220 0111223457999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHhcCCCcC
Q psy14609 141 NRLDLPPYPTPEVLYEKLLLAVEETNTFGI 170 (171)
Q Consensus 141 ~~L~LP~Y~s~e~l~~kL~~Ai~~~~gFgl 170 (171)
|.|+||.|+.+..|+|||+|||..+.||+|
T Consensus 1066 NlLKLPnY~kkStlreKLrYAIssntGFEL 1095 (1096)
T KOG4427|consen 1066 NLLKLPNYKKKSTLREKLRYAISSNTGFEL 1095 (1096)
T ss_pred HhhhCCCcchhHHHHHHHHHHhhcCCCccc
Confidence 999999999999999999999999999987
No 10
>KOG0940|consensus
Probab=99.96 E-value=2e-29 Score=210.74 Aligned_cols=160 Identities=56% Similarity=1.046 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
++||.++.+ +...++..|..++.+||..++|...++.|...+++.++||..++|+++|++++.|. +|..++++++|||
T Consensus 199 ~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~-~~~~~~~~i~wf~ 276 (358)
T KOG0940|consen 199 KEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEIDVNDWKQNTEYR-GYSETDRQIDWFW 276 (358)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCcccchhHHhhhcccc-cccCCccccHHHH
Confidence 579999999 88889999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred HHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCCCCCCceeccccceeecCCCCCHHHHHHHHHHH
Q psy14609 82 QAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLA 161 (171)
Q Consensus 82 ~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~A 161 (171)
+.+..+++++|.+.++|+||++++|..|+..+..+.+++.++|+..+..+.+|.+|||||.|.+|.|.|++.|++|+..|
T Consensus 277 ~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~~~~~~~~p~~htcfnrld~~~~~s~~~L~~kl~~a 356 (358)
T KOG0940|consen 277 NNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEKWGKSTQLPRSHTCFNRLDLPPYESYEPLREKLLLA 356 (358)
T ss_pred HhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecCcccccccchhcccccccccccccchhHHHHHHHHh
Confidence 99999999999999999999999999999999988899999999988889999999999999999999999999999999
Q ss_pred HH
Q psy14609 162 VE 163 (171)
Q Consensus 162 i~ 163 (171)
|+
T Consensus 357 i~ 358 (358)
T KOG0940|consen 357 IE 358 (358)
T ss_pred cC
Confidence 84
No 11
>KOG0943|consensus
Probab=99.96 E-value=7.9e-30 Score=230.78 Aligned_cols=164 Identities=25% Similarity=0.441 Sum_probs=139.3
Q ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCC----Chh
Q psy14609 1 MYHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDG----HPV 76 (171)
Q Consensus 1 v~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~----~~~ 76 (171)
|.|||++|++++|...-...++|||+|+.+|+|.+.|.-+++++|+.++||..+++++-|...|.|.....++ .+.
T Consensus 2847 ViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~eeVniqmL~e~TgFlDES~anaEkL~qF 2926 (3015)
T KOG0943|consen 2847 VIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGCEEVNIQMLIEFTGFLDESGANAEKLLQF 2926 (3015)
T ss_pred HHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeecccceehhHhhhhccccccccccHHHHHHH
Confidence 6799999999999987788999999999999999999999999999999999999999999999886422222 146
Q ss_pred HHHHHHHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCCCCCCceeccccceeecCCCCCHHHHHH
Q psy14609 77 IQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVLYE 156 (171)
Q Consensus 77 v~~fw~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~ 156 (171)
.+|||++++.||..+|+.++.|||||+.||..|-..-+ ..-...+..++..||+|+||.++|..|.|+|+++||+
T Consensus 2927 KqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~e~~p~-----~aSimiRP~dD~fLPTANTCISRLYVPlYSSKqiLkq 3001 (3015)
T KOG0943|consen 2927 KQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAEEGFPP-----MASIMIRPPDDQFLPTANTCISRLYVPLYSSKQILKQ 3001 (3015)
T ss_pred HHHHHHHHHHHhhhhhccEEEEecCCCCCCccccCCCC-----CCceeecCcccccCCcccchhhheeeechhhHHHHHH
Confidence 78999999999999999999999999999997632211 1112223345679999999999999999999999999
Q ss_pred HHHHHHHhcCCCcC
Q psy14609 157 KLLLAVEETNTFGI 170 (171)
Q Consensus 157 kL~~Ai~~~~gFgl 170 (171)
||+.||. ...|||
T Consensus 3002 KLLLAIK-aKNFGF 3014 (3015)
T KOG0943|consen 3002 KLLLAIK-AKNFGF 3014 (3015)
T ss_pred HHHHhhh-cccccc
Confidence 9999999 445665
No 12
>PF12449 DUF3684: Protein of unknown function (DUF3684) ; InterPro: IPR022155 This domain family is found in eukaryotes, and is typically between 1072 and 1090 amino acids in length.
Probab=49.60 E-value=38 Score=33.13 Aligned_cols=113 Identities=14% Similarity=0.229 Sum_probs=71.2
Q ss_pred ccCChhhhhcCCHHHHHHHHcCCCccccccccccceecC----------CCCCCChhHHHHH----HHHhhCCHHHHHHh
Q psy14609 30 EVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRS----------GYHDGHPVIQWFW----QAIERFTNEQRLRL 95 (171)
Q Consensus 30 ~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~----------g~~~~~~~v~~fw----~vl~~~s~e~~~~f 95 (171)
+++|...-+.++.++|+.+ |=.++++..|.++..-.. +.+.+.+...... +....+++..|..+
T Consensus 474 t~lP~~~tk~l~~~~L~~l--GW~eL~iv~Wl~~L~~~~~~~~~~~~e~dit~s~~fA~qVL~vLSK~W~~Ls~~sk~~v 551 (1093)
T PF12449_consen 474 TTLPFAFTKSLSANELQSL--GWEELSIVPWLRFLISNAGSRGSLPVEQDITKSPKFAEQVLPVLSKNWDNLSPSSKQTV 551 (1093)
T ss_pred CcCChHhhccCCHHHHhhc--CCeeccHHHHHHHHhcCCcCCCccccccccccChhHHHHHHHHHHhcccCCCHHHHHHH
Confidence 3556666678999999999 877888888888776542 2222222222222 33457899999999
Q ss_pred hhhhcCCCCCCCC-CcccccCCCCCCcceeecCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHH
Q psy14609 96 LQFVTGTSSVPYE-GFSALRGSTGPRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAV 162 (171)
Q Consensus 96 L~F~TG~~~lP~~-g~~~~~~~~~~~~~~~~~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~Ai 162 (171)
+.-..-...+|.. |++. |.. .. .....=-+.||+.+.|-+. +||++.||
T Consensus 552 ~~lL~~~t~iPTk~GMkk--P~E--aY--F~sV~LFdDLPvv~~~~gv------------kEKfL~AL 601 (1093)
T PF12449_consen 552 VSLLQPKTCIPTKLGMKK--PSE--AY--FPSVKLFDDLPVVTGCNGV------------KEKFLVAL 601 (1093)
T ss_pred HHHhccCcccccccccCC--chh--hh--cchhhhhcCcchhcccCch------------HHHHHHHh
Confidence 9999888889863 3211 100 00 0000012568888777654 78888887
No 13
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=42.83 E-value=40 Score=22.19 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=23.3
Q ss_pred HHHHHHhhCCHHHHHHhhhhh-----cCCCCCCCC
Q psy14609 79 WFWQAIERFTNEQRLRLLQFV-----TGTSSVPYE 108 (171)
Q Consensus 79 ~fw~vl~~~s~e~~~~fL~F~-----TG~~~lP~~ 108 (171)
-+..++++++.++.++|-... .|..++|-+
T Consensus 4 ~Ll~~Le~L~~~efk~FK~~L~~~~~~~~~~Ip~~ 38 (83)
T PF02758_consen 4 LLLWYLEELSEEEFKRFKWLLKEPVKEGFPPIPRG 38 (83)
T ss_dssp HHHHHHHTS-HHHHHHHHHHHHSTSSTTTCSSSHC
T ss_pred HHHHHHHhCCHHHHHHHHHHhcchhhcCCCCCCHH
Confidence 467899999999999999999 555566654
No 14
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=41.13 E-value=16 Score=29.35 Aligned_cols=61 Identities=16% Similarity=0.321 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH-----HHHhhCCHHHHHHhhhhhcCC
Q psy14609 39 VFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW-----QAIERFTNEQRLRLLQFVTGT 102 (171)
Q Consensus 39 ~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw-----~vl~~~s~e~~~~fL~F~TG~ 102 (171)
..++...-.++.+. ...++-| +|+|.|..+..++++.|.- =++..++++++++||.=.++.
T Consensus 164 v~s~a~Yy~lLa~~-~~rvDiW--~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~ 229 (257)
T COG4106 164 LPSPAAYYELLAPL-ACRVDIW--HTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLAL 229 (257)
T ss_pred CCCHHHHHHHhCcc-cceeeee--eeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHH
Confidence 45677777777776 2233333 4888888888899999865 589999999999999877653
No 15
>PHA02568 J baseplate assembly protein; Provisional
Probab=40.72 E-value=42 Score=27.91 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred hCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHHhc
Q psy14609 86 RFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEET 165 (171)
Q Consensus 86 ~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~Ai~~~ 165 (171)
..++.-|+.||.|++|+.-=-++-+-+ ..+..++..++ +..|-.. +.+.|.|.||+|+..|++.-
T Consensus 71 ~iN~aa~~~lla~A~g~dLD~l~a~~~------v~Rl~~~~a~~-~~~pp~~--------a~~EsDe~lR~Ri~la~~~~ 135 (300)
T PHA02568 71 RVNEAARAVMLAYAEGSDLDAIAANFN------VERLVVTPADP-NAFPPVP--------AVMEDDDSLRERIQLAPEGL 135 (300)
T ss_pred HHHHHHHHhHHhhccCccHHHHHhhcC------CeecccCCCCC-CCCCCCC--------CCCCCHHHHHHHHHHHhhcc
Confidence 567778899999999987533322211 22444443222 2222111 55899999999999999753
No 16
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=39.57 E-value=25 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.4
Q ss_pred hhCCHHHHHHhhhhhcCCCCC
Q psy14609 85 ERFTNEQRLRLLQFVTGTSSV 105 (171)
Q Consensus 85 ~~~s~e~~~~fL~F~TG~~~l 105 (171)
.+||++|-+.|=+|+|||+-=
T Consensus 50 D~lTpDQVrAlHRlvTsSpe~ 70 (92)
T PHA02681 50 DKMTDDQVRAFHALVTSSPED 70 (92)
T ss_pred ccCCHHHHHHHHHHHhCCCCC
Confidence 379999999999999999743
No 17
>PF13257 DUF4048: Domain of unknown function (DUF4048)
Probab=36.75 E-value=66 Score=26.20 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccc
Q psy14609 13 LERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNT 64 (171)
Q Consensus 13 l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~ 64 (171)
|....+...+-||.||+.. .|+|+++-.|+.-|+-...+...
T Consensus 82 l~rtgkQmAeDfK~GLWTF----------vEDIRQATVGDEpInG~~~R~~~ 123 (253)
T PF13257_consen 82 LMRTGKQMAEDFKEGLWTF----------VEDIRQATVGDEPINGQQSRGSS 123 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHhhccccccCCccccccc
Confidence 5555677789999999987 49999999999888876665543
No 18
>PF13945 NST1: Salt tolerance down-regulator
Probab=27.63 E-value=52 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=15.0
Q ss_pred hhHHHHHHHHhhCCHHHHHHhhh
Q psy14609 75 PVIQWFWQAIERFTNEQRLRLLQ 97 (171)
Q Consensus 75 ~~v~~fw~vl~~~s~e~~~~fL~ 97 (171)
..++-|| .+|++++|+.||+
T Consensus 105 e~LkeFW---~SL~eeERr~LVk 124 (190)
T PF13945_consen 105 EKLKEFW---ESLSEEERRSLVK 124 (190)
T ss_pred HHHHHHH---HccCHHHHHHHHH
Confidence 4567777 4788899988875
No 19
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=26.81 E-value=38 Score=23.78 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=22.0
Q ss_pred hhCCHHHHHHhhhhhcCCCCCCCCCcc
Q psy14609 85 ERFTNEQRLRLLQFVTGTSSVPYEGFS 111 (171)
Q Consensus 85 ~~~s~e~~~~fL~F~TG~~~lP~~g~~ 111 (171)
.+-+--.|+.+|.|.|.+..+|.+|..
T Consensus 29 a~rng~srr~llt~l~staaip~~~~~ 55 (122)
T PLN00078 29 AQRNGISRRCLLTFLTSTAAIPEAGSE 55 (122)
T ss_pred HHhcchhHHHHHHHHHhhccCCCCcCc
Confidence 344556789999999999999998754
No 20
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=23.69 E-value=1e+02 Score=20.34 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=24.1
Q ss_pred HHHHHHhhCCHHHHHHhhhhhcC-----CCCCCCCCcc
Q psy14609 79 WFWQAIERFTNEQRLRLLQFVTG-----TSSVPYEGFS 111 (171)
Q Consensus 79 ~fw~vl~~~s~e~~~~fL~F~TG-----~~~lP~~g~~ 111 (171)
-+..+++++++++.++|=.+... ..++|-+...
T Consensus 3 ~Ll~~Le~L~~~ElkkFK~~L~~~~~~g~~~Ip~~~le 40 (82)
T cd08321 3 LLLDALEDLEEDELKKFKWKLRDIPLEGFPRIPRGELE 40 (82)
T ss_pred HHHHHHHHhCHHHHHHHHHHHhhhhhccCCCCChHhhc
Confidence 46789999999999998777664 3566655443
No 21
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=22.76 E-value=43 Score=21.45 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=19.6
Q ss_pred HhhCCHHHHHHhhhhhcCCCCCCCCCcc
Q psy14609 84 IERFTNEQRLRLLQFVTGTSSVPYEGFS 111 (171)
Q Consensus 84 l~~~s~e~~~~fL~F~TG~~~lP~~g~~ 111 (171)
++.++.++.++++.|+.|....=-|...
T Consensus 29 l~~l~~~~~~Ri~Dfl~G~~~al~G~i~ 56 (73)
T PF04472_consen 29 LENLDDEEAQRILDFLSGAVYALDGDIQ 56 (73)
T ss_dssp -TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCHHHHHHHHHHHhchheeeCCEEE
Confidence 3578999999999999998765544443
No 22
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=44 Score=26.69 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcccCC----h--hhhhcCCHHHHHHHHcCC--Cccccccccc
Q psy14609 18 ADQTESLVRGFYEVVD----P--RLVSVFDARELELVIAGT--AEIDLGDWAS 62 (171)
Q Consensus 18 ~~q~~afr~Gf~~v~p----~--~~l~~f~~~el~~ll~G~--~~id~~~l~~ 62 (171)
...+.+|++|..+|-. - -+....+|+++++++.|. .+||++++-.
T Consensus 47 ~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~G~~~~~iDv~~~Ve 99 (265)
T COG5494 47 LPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILSGQVTKQIDVASLVE 99 (265)
T ss_pred CChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHcCccccccchhhHHH
Confidence 3467889999887632 2 244678999999999995 4688776544
No 23
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=21.11 E-value=1.6e+02 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=10.4
Q ss_pred HHHHHHHHhhcccC
Q psy14609 19 DQTESLVRGFYEVV 32 (171)
Q Consensus 19 ~q~~afr~Gf~~v~ 32 (171)
..-.|||.||.+++
T Consensus 46 ~~e~afr~G~~d~l 59 (64)
T PF12644_consen 46 ESEEAFRQGFRDGL 59 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 35578999998764
No 24
>KOG1108|consensus
Probab=20.87 E-value=73 Score=25.74 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.6
Q ss_pred CCCCceeccccce
Q psy14609 130 PNSLPRAHTCFNR 142 (171)
Q Consensus 130 ~~~LP~a~TC~~~ 142 (171)
+++=|+|.+|+..
T Consensus 268 ~~C~P~a~~C~~~ 280 (281)
T KOG1108|consen 268 DNCEPQARECFYR 280 (281)
T ss_pred CCCCcccceeeec
Confidence 4678999999864
Done!