Query psy14609
Match_columns 171
No_of_seqs 132 out of 1077
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 16:06:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvd_A SMAD ubiquitination reg 100.0 2E-58 6.7E-63 389.5 14.2 169 2-171 211-380 (380)
2 3olm_A E3 ubiquitin-protein li 100.0 2.6E-57 8.7E-62 387.6 15.4 169 2-171 261-429 (429)
3 1c4z_A E6AP, ubiquitin-protein 100.0 1.1E-56 3.7E-61 376.2 13.1 162 2-170 194-357 (358)
4 3h1d_A E3 ubiquitin-protein li 100.0 3.5E-56 1.2E-60 377.7 16.2 168 2-170 235-404 (405)
5 1nd7_A WW domain-containing pr 100.0 3.4E-56 1.1E-60 375.2 15.5 164 2-166 211-374 (374)
6 2oni_A E3 ubiquitin-protein li 100.0 9.6E-56 3.3E-60 374.2 14.8 163 2-164 230-392 (392)
7 3pt3_A E3 ubiquitin-protein li 100.0 4.7E-44 1.6E-48 255.8 8.5 110 53-170 2-117 (118)
8 1l6x_B Minimized B-domain of p 52.3 17 0.00059 19.3 3.0 22 76-97 5-28 (34)
9 1sn9_A BBAT, tetrameric beta-B 45.9 13 0.00044 18.0 1.7 19 144-162 3-21 (26)
10 3ivp_A Putative transposon-rel 38.9 45 0.0015 22.1 4.4 63 39-101 36-108 (126)
11 2kzi_A Engineered protein, ZHE 35.1 20 0.00069 22.2 1.8 20 78-97 23-44 (70)
12 1zda_A Mini protein A domain, 34.4 22 0.00074 19.4 1.7 22 76-97 10-33 (38)
13 3lfp_A CSP231I C protein; tran 31.0 67 0.0023 20.1 4.1 61 40-101 26-94 (98)
14 3q4o_A Uncharacterized protein 29.9 91 0.0031 23.3 5.1 43 12-54 149-191 (196)
15 1b3t_A Protein (nuclear protei 29.5 24 0.00082 24.7 1.7 52 99-163 73-124 (147)
16 3p04_A Uncharacterized BCR; SE 25.8 19 0.00067 23.3 0.6 30 84-113 35-64 (87)
17 2hm2_Q ASC2, pyrin-only protei 24.5 85 0.0029 19.9 3.6 33 78-110 6-44 (89)
18 2e9x_A DNA replication complex 23.9 1.9E+02 0.0064 20.1 6.2 42 5-47 72-113 (149)
19 2lr2_A Immunoglobulin G-bindin 23.6 69 0.0024 20.3 2.9 28 75-102 21-50 (88)
20 3op9_A PLI0006 protein; struct 22.9 1.3E+02 0.0043 19.3 4.4 61 40-100 34-106 (114)
21 3qwo_C Motavizumab epitope sca 22.8 1E+02 0.0035 18.2 3.3 24 76-99 6-31 (57)
22 1b0n_A Protein (SINR protein); 22.1 1.2E+02 0.004 19.1 4.1 25 76-100 78-103 (111)
No 1
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-58 Score=389.45 Aligned_cols=169 Identities=49% Similarity=0.883 Sum_probs=156.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
+|||+++++|+++++++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|. ||++++++|+|||
T Consensus 211 ~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~-gy~~~~~~i~~FW 289 (380)
T 1zvd_A 211 KEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLK-HCTPDSNIVKWFW 289 (380)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEE-SSCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEec-CCCCCcchhhhHH
Confidence 699999999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred HHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceee-cCCCCCCCceeccccceeecCCCCCHHHHHHHHHH
Q psy14609 82 QAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIE-KWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLL 160 (171)
Q Consensus 82 ~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~-~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~ 160 (171)
+++++||+++|++||+|+||++++|++||+.+.++.+|++++|+ ..+++++||+||||||+|+||.|+|+|+|++||++
T Consensus 290 ~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~ 369 (380)
T 1zvd_A 290 KAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLT 369 (380)
T ss_dssp HHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCEETTEECCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCCCcchhhccccCCCCceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999888888889998 45567899999999999999999999999999999
Q ss_pred HHHhcCCCcCC
Q psy14609 161 AVEETNTFGIE 171 (171)
Q Consensus 161 Ai~~~~gFgl~ 171 (171)
||++++|||++
T Consensus 370 AI~~~~GF~l~ 380 (380)
T 1zvd_A 370 AIEETCGFAVE 380 (380)
T ss_dssp HHCC-------
T ss_pred HHHhCCCcCcC
Confidence 99999999986
No 2
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-57 Score=387.56 Aligned_cols=169 Identities=51% Similarity=0.927 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
+|||+++++|+++++++.|++||++||++|+|.++|++|+|+||+.|+||.++||+++|+++|.|. ||++++++|+|||
T Consensus 261 ~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~-Gy~~~~~~I~~FW 339 (429)
T 3olm_A 261 KEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYR-GYQESDEVIQWFW 339 (429)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEE-SCCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhcccc-CCCCCchHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred HHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCCCCCCceeccccceeecCCCCCHHHHHHHHHHH
Q psy14609 82 QAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLA 161 (171)
Q Consensus 82 ~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~A 161 (171)
+++++||+++|++||+|+||++++|++||+.+.++.+|++++|.+.+++++||+||||||+|+||.|+|+|+||+||++|
T Consensus 340 ~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~~~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~A 419 (429)
T 3olm_A 340 KCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLA 419 (429)
T ss_dssp HHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhHhcCCCCCCCcccccccCcCCCceEEEeeCCCCCCCCccccccCEeECCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888889999888889999999999999999999999999999999
Q ss_pred HHhcCCCcCC
Q psy14609 162 VEETNTFGIE 171 (171)
Q Consensus 162 i~~~~gFgl~ 171 (171)
|++++|||+|
T Consensus 420 I~~~~GFg~e 429 (429)
T 3olm_A 420 VEETIGFGQE 429 (429)
T ss_dssp HHHTC-----
T ss_pred HHcCCCCCCC
Confidence 9999999986
No 3
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=1.1e-56 Score=376.23 Aligned_cols=162 Identities=35% Similarity=0.616 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhh-cCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVS-VFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWF 80 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~-~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~f 80 (171)
+|||+++++|+++++++.|++||++||++|+|.+.|. +|+|+||+.++||.++||+++|+++|.|.+||++++++|+||
T Consensus 194 ~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~~~~i~~F 273 (358)
T 1c4z_A 194 KEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREF 273 (358)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCCcchhhhH
Confidence 6999999999999999999999999999999998886 899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCC-CCCCCceeccccceeecCCCCCHHHHHHHHH
Q psy14609 81 WQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWG-KPNSLPRAHTCFNRLDLPPYPTPEVLYEKLL 159 (171)
Q Consensus 81 w~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~-~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~ 159 (171)
|+++++||+++|++||+|+||++|+|++||+.++ ++|.+.+ ++++||+||||||+|+||.|+|+|+||+||+
T Consensus 274 W~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l~-------~~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~ 346 (358)
T 1c4z_A 274 WEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLK-------MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLL 346 (358)
T ss_dssp HHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGGC-------CEEEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccce-------eeeecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999873 6676544 4589999999999999999999999999999
Q ss_pred HHHHhcCCCcC
Q psy14609 160 LAVEETNTFGI 170 (171)
Q Consensus 160 ~Ai~~~~gFgl 170 (171)
+||++++||||
T Consensus 347 ~AI~~~~GFgl 357 (358)
T 1c4z_A 347 KAITYAKGFGM 357 (358)
T ss_dssp HHHHHC-----
T ss_pred HHHHhCCCCCc
Confidence 99999999997
No 4
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=3.5e-56 Score=377.71 Aligned_cols=168 Identities=44% Similarity=0.803 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
+|||+++++|+++.+++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|. ||++++++|+|||
T Consensus 235 ~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~-gy~~~~~~i~~FW 313 (405)
T 3h1d_A 235 KEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH-KYQSNSIQIQWFW 313 (405)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEE-SSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCccc-CCCCCCchHhhHH
Confidence 699999999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred HHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCC-CCCCCceeccccceeecCCCCCHHHHHHHHHH
Q psy14609 82 QAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWG-KPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLL 160 (171)
Q Consensus 82 ~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~-~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~ 160 (171)
+++++||+++|++||+|+||++++|++||+.+.+..++.+++|.+.+ ++++||+||||||+|+||.|+|+|+||+||++
T Consensus 314 ~v~~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~ 393 (405)
T 3h1d_A 314 RALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLL 393 (405)
T ss_dssp HHHHHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcCCCCCCCCccccccccCCCceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999887777788887654 46899999999999999999999999999999
Q ss_pred HHHhc-CCCcC
Q psy14609 161 AVEET-NTFGI 170 (171)
Q Consensus 161 Ai~~~-~gFgl 170 (171)
||++| +||||
T Consensus 394 AI~e~~~GFgl 404 (405)
T 3h1d_A 394 AIQEASEGFGL 404 (405)
T ss_dssp HHHC-------
T ss_pred HHHhCCCCcCC
Confidence 99996 79997
No 5
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=3.4e-56 Score=375.22 Aligned_cols=164 Identities=52% Similarity=0.930 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
+|||+++++|+++++++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|. ||++++++|+|||
T Consensus 211 ~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~-gy~~~~~~i~~FW 289 (374)
T 1nd7_A 211 DEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYR-HYTRNSKQIIWFW 289 (374)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEE-SCCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEc-CCCCCCcceeeHH
Confidence 699999999999999999999999999999999999999999999999999999999999999998 5999999999999
Q ss_pred HHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCCCCCCceeccccceeecCCCCCHHHHHHHHHHH
Q psy14609 82 QAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLA 161 (171)
Q Consensus 82 ~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~A 161 (171)
+++++||+++|++||+|+||++++|++||+.+.++.+|.+++|++.+++++||+||||||+|+||.|+|+|+|++||++|
T Consensus 290 ~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~A 369 (374)
T 1nd7_A 290 QFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFA 369 (374)
T ss_dssp HHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhCCCCCCCcchhhccccCCCCceEEEeCCCCCcCCEEEcccCEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888889999888889999999999999999999999999999999
Q ss_pred HHhcC
Q psy14609 162 VEETN 166 (171)
Q Consensus 162 i~~~~ 166 (171)
|++++
T Consensus 370 I~~~e 374 (374)
T 1nd7_A 370 IEETE 374 (374)
T ss_dssp HHSCC
T ss_pred HHhcC
Confidence 99874
No 6
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=9.6e-56 Score=374.22 Aligned_cols=163 Identities=51% Similarity=0.979 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCccccccccccceecCCCCCCChhHHHHH
Q psy14609 2 YHSRKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEYRSGYHDGHPVIQWFW 81 (171)
Q Consensus 2 ~eyv~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~id~~~l~~~~~~~~g~~~~~~~v~~fw 81 (171)
+|||+++++|+++.+++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|.+||++++++|+|||
T Consensus 230 ~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~~~~i~~FW 309 (392)
T 2oni_A 230 REYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFW 309 (392)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCCCchheeHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHhhhhhcCCCCCCCCCcccccCCCCCCcceeecCCCCCCCceeccccceeecCCCCCHHHHHHHHHHH
Q psy14609 82 QAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLA 161 (171)
Q Consensus 82 ~vl~~~s~e~~~~fL~F~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~A 161 (171)
+++++||+++|++||+|+||++++|++||+.+.++.+|.+++|++.+++++||+||||||+|+||.|+|+|+||+||++|
T Consensus 310 ~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~A 389 (392)
T 2oni_A 310 KAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMA 389 (392)
T ss_dssp HHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCCEEEECSCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCCCcchhhhcccCCCCceEEEeCCCCCcCcEEEcccCEeECCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999877778889999888889999999999999999999999999999999
Q ss_pred HHh
Q psy14609 162 VEE 164 (171)
Q Consensus 162 i~~ 164 (171)
|+|
T Consensus 390 I~n 392 (392)
T 2oni_A 390 VEN 392 (392)
T ss_dssp HC-
T ss_pred HhC
Confidence 985
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=255.85 Aligned_cols=110 Identities=30% Similarity=0.573 Sum_probs=78.0
Q ss_pred CccccccccccceecCCCCCCC----hhHHHHHHHHhhCCHHHHHHhhhhhcCCCCCCC--CCcccccCCCCCCcceeec
Q psy14609 53 AEIDLGDWASNTEYRSGYHDGH----PVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPY--EGFSALRGSTGPRKFCIEK 126 (171)
Q Consensus 53 ~~id~~~l~~~~~~~~g~~~~~----~~v~~fw~vl~~~s~e~~~~fL~F~TG~~~lP~--~g~~~~~~~~~~~~~~~~~ 126 (171)
+.||+++|++||.|.++|++++ ++|+|||+++++||+++|++||+|+||++++|+ +||+.++ ++++..
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l~------~~~i~~ 75 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMP------SITIRP 75 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC------------C------EEEEES
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccCC------cEEEEC
Confidence 5799999999999998888876 999999999999999999999999999999999 7998873 466653
Q ss_pred CCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHHhcCCCcC
Q psy14609 127 WGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTFGI 170 (171)
Q Consensus 127 ~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~Ai~~~~gFgl 170 (171)
+++++||+||||||+|+||.|+|+|+|++||++||++ +||||
T Consensus 76 -~~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf 117 (118)
T 3pt3_A 76 -PDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF 117 (118)
T ss_dssp -CCTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred -CCCCCCccceehhceeECCCCCCHHHHHHHHHHHHHh-CCcCC
Confidence 5678999999999999999999999999999999998 89997
No 8
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=52.32 E-value=17 Score=19.29 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=18.5
Q ss_pred hHHHHHHHHh--hCCHHHHHHhhh
Q psy14609 76 VIQWFWQAIE--RFTNEQRLRLLQ 97 (171)
Q Consensus 76 ~v~~fw~vl~--~~s~e~~~~fL~ 97 (171)
..+.|.+||+ .+|+++|-.+++
T Consensus 5 qQnaFYevLh~~nLtEeQrn~yI~ 28 (34)
T 1l6x_B 5 CQRRFYEALHDPNLNEEQRNAKIK 28 (34)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHH
Confidence 4578999996 899999998875
No 9
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=45.94 E-value=13 Score=18.05 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.6
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy14609 144 DLPPYPTPEVLYEKLLLAV 162 (171)
Q Consensus 144 ~LP~Y~s~e~l~~kL~~Ai 162 (171)
++|.|+=.+.+.+-|+.|.
T Consensus 3 ripsydfadelakllrqa~ 21 (26)
T 1sn9_A 3 RIPSYDFADELAKLLRQAX 21 (26)
T ss_dssp CBTTBCHHHHHHHHHHHHT
T ss_pred CCCccchHHHHHHHHHHhh
Confidence 6899999999999888874
No 10
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=38.94 E-value=45 Score=22.09 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHcCCCccccccccccceec----------CCCCCCChhHHHHHHHHhhCCHHHHHHhhhhhcC
Q psy14609 39 VFDARELELVIAGTAEIDLGDWASNTEYR----------SGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTG 101 (171)
Q Consensus 39 ~f~~~el~~ll~G~~~id~~~l~~~~~~~----------~g~~~~~~~v~~fw~vl~~~s~e~~~~fL~F~TG 101 (171)
.++..-+..+-.|...++++.+.+.+.+- .+....+.....+.+.+..++++++..++.++.+
T Consensus 36 gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~i~~ 108 (126)
T 3ivp_A 36 EIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLVIMESVADG 108 (126)
T ss_dssp TCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788888888887666666555544321 0112245566788899999999999998888753
No 11
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=35.12 E-value=20 Score=22.20 Aligned_cols=20 Identities=15% Similarity=0.516 Sum_probs=16.8
Q ss_pred HHHHHHHh--hCCHHHHHHhhh
Q psy14609 78 QWFWQAIE--RFTNEQRLRLLQ 97 (171)
Q Consensus 78 ~~fw~vl~--~~s~e~~~~fL~ 97 (171)
..||+|+. .+++++|..|++
T Consensus 23 nAFYeiL~~pnLtEeQrngfI~ 44 (70)
T 2kzi_A 23 NAYWEIALLPNLNNQQKRAFIR 44 (70)
T ss_dssp TSSHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCcchhhhhcccc
Confidence 56999996 899999988765
No 12
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=34.42 E-value=22 Score=19.39 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.3
Q ss_pred hHHHHHHHHh--hCCHHHHHHhhh
Q psy14609 76 VIQWFWQAIE--RFTNEQRLRLLQ 97 (171)
Q Consensus 76 ~v~~fw~vl~--~~s~e~~~~fL~ 97 (171)
..+.|.+||+ .+|+|+|-.|++
T Consensus 10 QQnaFYevLh~~nLtEeQrn~yI~ 33 (38)
T 1zda_A 10 QQRRFYEALHDPNLNEEQRNAKIK 33 (38)
T ss_dssp SSHHHHHHHSCSSSCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHH
Confidence 3467999996 899999998876
No 13
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=30.96 E-value=67 Score=20.13 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=39.4
Q ss_pred CCHHH----HHHHHcCCCccccccccccceecC---C-CCCCChhHHHHHHHHhhCCHHHHHHhhhhhcC
Q psy14609 40 FDARE----LELVIAGTAEIDLGDWASNTEYRS---G-YHDGHPVIQWFWQAIERFTNEQRLRLLQFVTG 101 (171)
Q Consensus 40 f~~~e----l~~ll~G~~~id~~~l~~~~~~~~---g-~~~~~~~v~~fw~vl~~~s~e~~~~fL~F~TG 101 (171)
.++.- +..+-.|...++.+.+.+...+-+ . +-..+....-....+..++++++..+ .|+.+
T Consensus 26 is~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~l~~ 94 (98)
T 3lfp_A 26 IDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQIILTWNELNEQERKRI-NFYIR 94 (98)
T ss_dssp CCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGGGGCCCHHHHHHHHHHTTCCHHHHHHH-HHHHT
T ss_pred CCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCChhHHHHHHHHHhCCHHHHHHH-HHHHH
Confidence 46676 777788876666665555443320 0 11123345567788999999999998 88765
No 14
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=29.91 E-value=91 Score=23.29 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=33.2
Q ss_pred HHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHHHHcCCCc
Q psy14609 12 RLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAE 54 (171)
Q Consensus 12 ~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ll~G~~~ 54 (171)
.|..+.+.++.||.+.+...-....-+.++.+|++.++.+..+
T Consensus 149 nL~~gS~nHLrAF~r~L~~~G~~Y~pq~ls~~e~~~i~~~~~e 191 (196)
T 3q4o_A 149 NLMKGSRNHMRAFVRMLNNYGSNYTPQYISKEEYEEIISSSTE 191 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCSSSCHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccCCHHHHHHHHCChhh
Confidence 3445567999999999987655555677899999999988644
No 15
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=29.53 E-value=24 Score=24.70 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=36.8
Q ss_pred hcCCCCCCCCCcccccCCCCCCcceeecCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHH
Q psy14609 99 VTGTSSVPYEGFSALRGSTGPRKFCIEKWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVE 163 (171)
Q Consensus 99 ~TG~~~lP~~g~~~~~~~~~~~~~~~~~~~~~~~LP~a~TC~~~L~LP~Y~s~e~l~~kL~~Ai~ 163 (171)
+|+-.|||.|-. ......+..|=++.+|.+...|+---..|.+|+.|+--|.
T Consensus 73 ltpL~RLPyG~a-------------~gpGPqPgPlrES~~~yFlvFlqt~~fAe~~kDAi~Dyi~ 124 (147)
T 1b3t_A 73 LTPLSRLPFGMA-------------PGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVM 124 (147)
T ss_dssp ECCCEEEECCCC-------------SSSSCCCCTTCEEEEEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCcC-------------CCCCCCCCcchhheeeeeeeeeehhHHHHHHHHHHHHHHh
Confidence 367777776421 1222346788899999999999998778888877766554
No 16
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=25.79 E-value=19 Score=23.34 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=24.1
Q ss_pred HhhCCHHHHHHhhhhhcCCCCCCCCCcccc
Q psy14609 84 IERFTNEQRLRLLQFVTGTSSVPYEGFSAL 113 (171)
Q Consensus 84 l~~~s~e~~~~fL~F~TG~~~lP~~g~~~~ 113 (171)
++.++.++.++++-|++|....=-|.++..
T Consensus 35 L~~ld~~~AqRivDF~sG~~yal~G~i~kI 64 (87)
T 3p04_A 35 MSLLSREEARRIVDFAAGLCFALHGKMQKI 64 (87)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHhccceEEeccEEEEE
Confidence 467999999999999999887666655544
No 17
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=24.54 E-value=85 Score=19.93 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCHHHHHHhhhhhc------CCCCCCCCCc
Q psy14609 78 QWFWQAIERFTNEQRLRLLQFVT------GTSSVPYEGF 110 (171)
Q Consensus 78 ~~fw~vl~~~s~e~~~~fL~F~T------G~~~lP~~g~ 110 (171)
.-+..+++++++++.++|=.+.- |..++|-+..
T Consensus 6 ~~L~~~Le~L~~~Elk~FK~~L~~~~~~~~~~~Ip~~~l 44 (89)
T 2hm2_Q 6 EAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGAL 44 (89)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHTTTSCCCTTCCCCCGGGT
T ss_pred HHHHHHHHHcCHHHHHHHHHHHccccccccCCCCChhhc
Confidence 34668999999999999988864 4445555443
No 18
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=23.89 E-value=1.9e+02 Score=20.15 Aligned_cols=42 Identities=19% Similarity=0.089 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcccCChhhhhcCCHHHHHH
Q psy14609 5 RKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELEL 47 (171)
Q Consensus 5 v~~~~~~~l~~~v~~q~~afr~Gf~~v~p~~~l~~f~~~el~~ 47 (171)
++.++..++..+ ...++.++=-+..++|...-..++|+|.+.
T Consensus 72 nKrcLlAYl~~R-l~kI~~~~w~~g~~L~~~~~~~LS~~E~~f 113 (149)
T 2e9x_A 72 NRRCTVAYLYDR-LLRIRALRWEYGSVLPNALRFHMAAEEMEW 113 (149)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHCSSCCHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHccccCChHHHhcCCHHHHHH
Confidence 344455555554 335666665555677777777778887653
No 19
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=23.63 E-value=69 Score=20.35 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=22.5
Q ss_pred hhHHHHHHHHh--hCCHHHHHHhhhhhcCC
Q psy14609 75 PVIQWFWQAIE--RFTNEQRLRLLQFVTGT 102 (171)
Q Consensus 75 ~~v~~fw~vl~--~~s~e~~~~fL~F~TG~ 102 (171)
.....||+++. .+++|+|..|++=.---
T Consensus 21 ~qqnAfyEIl~lPNLneeQrnafiqSLkDD 50 (88)
T 2lr2_A 21 EQQNAFYEILHLPNLNEEQRNAFIQSLKDD 50 (88)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Confidence 45678999997 89999999998865433
No 20
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=22.93 E-value=1.3e+02 Score=19.27 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=38.0
Q ss_pred CCHHHHHHHHcCCCccccccccccceecC------------CCCCCChhHHHHHHHHhhCCHHHHHHhhhhhc
Q psy14609 40 FDARELELVIAGTAEIDLGDWASNTEYRS------------GYHDGHPVIQWFWQAIERFTNEQRLRLLQFVT 100 (171)
Q Consensus 40 f~~~el~~ll~G~~~id~~~l~~~~~~~~------------g~~~~~~~v~~fw~vl~~~s~e~~~~fL~F~T 100 (171)
.+..-+..+..|...++.+.+.+.+.+-+ ......+....+.+.+..++++++..++.++.
T Consensus 34 is~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~i~ 106 (114)
T 3op9_A 34 VQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDKVWNDLSLKQWLLSLNLRSEEEIAKIKILVD 106 (114)
T ss_dssp SCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHTCCCC--CCSCHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhcCCCcccccCcHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777777777765555554444333210 01123445677778899999999988877653
No 21
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=22.80 E-value=1e+02 Score=18.21 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=19.2
Q ss_pred hHHHHHHHHh--hCCHHHHHHhhhhh
Q psy14609 76 VIQWFWQAIE--RFTNEQRLRLLQFV 99 (171)
Q Consensus 76 ~v~~fw~vl~--~~s~e~~~~fL~F~ 99 (171)
....|.+|++ .+++++|..|++=+
T Consensus 6 qQ~AFYeil~lpnLtEeqRn~yI~sl 31 (57)
T 3qwo_C 6 KKLASNEIANLPNLNEEQRSAFLSSI 31 (57)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchhhccchHhhh
Confidence 4567999986 89999999988643
No 22
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=22.07 E-value=1.2e+02 Score=19.13 Aligned_cols=25 Identities=12% Similarity=0.148 Sum_probs=18.9
Q ss_pred hHHHHHHHH-hhCCHHHHHHhhhhhc
Q psy14609 76 VIQWFWQAI-ERFTNEQRLRLLQFVT 100 (171)
Q Consensus 76 ~v~~fw~vl-~~~s~e~~~~fL~F~T 100 (171)
....+.+.+ ..++++++..++.++-
T Consensus 78 ~~~~l~~~~~~~l~~e~~~~i~~~i~ 103 (111)
T 1b0n_A 78 WEKLVRDAMTSGVSKKQFREFLDYQK 103 (111)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445555777 8999999998887763
Done!