RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14609
(171 letters)
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 224 bits (574), Expect = 9e-74
Identities = 80/164 (48%), Positives = 104/164 (63%), Gaps = 6/164 (3%)
Query: 7 RIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEY 66
V +RL +G+ +Q E+ GF EV+ L+S+F ELEL+I G+ +IDL D NTEY
Sbjct: 194 LYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEY 253
Query: 67 RSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEK 126
+ GY P IQWFW+ +E FTNE+R + LQFVTG+S +P GF+ L KF I +
Sbjct: 254 KGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLN-----PKFTIRR 308
Query: 127 WGKP-NSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTFG 169
G P + LP AHTCFN L LPPY + E+L EKLL A+ E FG
Sbjct: 309 VGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 222 bits (569), Expect = 2e-73
Identities = 81/163 (49%), Positives = 105/163 (64%), Gaps = 6/163 (3%)
Query: 7 RIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTEY 66
++ +RL +G+ Q E+ GF EV+ L+ +FD ELEL+I G+ EID+ D SNTEY
Sbjct: 171 LVIEYRLNKGIEKQLEAFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEY 230
Query: 67 RSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEK 126
+ GY I+WFW+ +E FTNE+R +LLQFVTG+S +P GF+AL KF I K
Sbjct: 231 KGGYSANSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSP-----KFTIRK 285
Query: 127 WGKP-NSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTF 168
G LP AHTCFNRL LPPY + E+L EKLLLA+ E F
Sbjct: 286 AGSDDERLPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKGF 328
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 212 bits (543), Expect = 9e-70
Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 8/166 (4%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTE 65
V +RL + Q E+ GFY V+ L+S+F ELEL+I G+ EID+ D NTE
Sbjct: 139 NLYVDYRLNESIKKQLEAFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTE 198
Query: 66 YRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIE 125
Y GY P I+WFW+ +E FT E+R + L+FVTG+S +P GF L K I+
Sbjct: 199 YDGGYSKNSPTIKWFWEVLEEFTQEERRKFLKFVTGSSRLPLGGFKKL-------KITIQ 251
Query: 126 KWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNT-FGI 170
+ + LP AHTCFNRL LPPY + E+L EKLL+A+EE + FG+
Sbjct: 252 RKDDDDRLPTAHTCFNRLKLPPYSSKEILKEKLLIAIEEGSEGFGL 297
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 200 bits (510), Expect = 2e-60
Identities = 83/168 (49%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAE-IDLGDWASNT 64
K++V ++L + V Q + GF E++ P L+ +FD ELEL+I G E ID+ DW SNT
Sbjct: 706 KKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNT 765
Query: 65 EYRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCI 124
Y GY + P+I WFW+ I F E+R +LLQFVTGTS +P GF L+GS G RKF I
Sbjct: 766 AYH-GYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTI 824
Query: 125 EKWGKP-NSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEETNTFGIE 171
EK G + LP AHTCFNRL LP Y + E L KLL A+ E FG+
Sbjct: 825 EKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAGFGLL 872
>gnl|CDD|223881 COG0811, TolQ, Biopolymer transport proteins [Intracellular
trafficking and secretion].
Length = 216
Score = 28.8 bits (65), Expect = 1.2
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 22/115 (19%)
Query: 5 RKRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNT 64
+R+ + E V E DP + A
Sbjct: 38 GERLSLFEKRFWSGRSLEDAVLKLAESRDP-------------LSALELIFASAINELRR 84
Query: 65 EYRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGP 119
R+G G P+ + +A+E + RL + +T +++ GS P
Sbjct: 85 IERAGLKLGAPLKERARRALEEAIAREERRLERGLTLLATI---------GSIAP 130
>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional.
Length = 400
Score = 28.6 bits (64), Expect = 1.5
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 62 SNTEYRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRG 115
S T+Y +G+ D VI F E F N+ +L ++ +TG+ P+E F +RG
Sbjct: 209 SATKYLNGHGD---VIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRG 259
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed.
Length = 763
Score = 28.7 bits (65), Expect = 1.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 149 PTPEVLYEKLLLAVEETNTFGIE 171
PT E L E +LA EE FGIE
Sbjct: 609 PTAEELAEITILAAEEVRRFGIE 631
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 28.7 bits (64), Expect = 1.7
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 8 IVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNT 64
I++ LE GV +S + G S+ R+L+L++ A+I+ + T
Sbjct: 250 ILKLLLEHGVDVNAKSYILGL----TALHSSIKSERKLKLLLEYGADINSLNSYKLT 302
>gnl|CDD|226865 COG4458, SrfC, Uncharacterized protein conserved in bacteria,
putative virulence factor [Function unknown].
Length = 821
Score = 28.7 bits (64), Expect = 1.8
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 72 DGHPVIQWFWQA-----IERFTNEQRLRLLQFVTGTSS 104
D P+ +A +ER+T +Q+L L T S+
Sbjct: 363 DNQPLKDLLVRAKVAYLLERYTAQQQLNSLLVCTAPSN 400
>gnl|CDD|132738 cd06940, NR_LBD_REV_ERB, The ligand binding domain of REV-ERB
receptors, members of the nuclear receptor superfamily.
The ligand binding domain (LBD) of REV-ERB receptors:
REV-ERBs are transcriptional regulators belonging to
the nuclear receptor superfamily. They regulate a
number of physiological functions including the
circadian rhythm, lipid metabolism, and cellular
differentiation. The LBD domain of REV-ERB is unusual
in the nuclear receptor family by lacking the AF-2
region that is responsible for coactivator interaction.
REV-ERBs act as constitutive repressors because of
their inability to bind coactivators. REV-ERB
receptors can bind to two classes of DNA response
elements as either a monomer or heterodimer, indicating
functional diversity. When bound to the DNA, they
recruit corepressors (NcoR/histone deacetylase 3) to
the promoter, resulting in repression of the target
gene. The porphyrin heme has been demonstrated to
function as a ligand for REV-ERB. Like other members of
the nuclear receptor (NR) superfamily of
ligand-activated transcription factors, REV-ERB
receptors have a central well conserved DNA binding
domain (DBD), a variable N-terminal domain, a
non-conserved hinge and a C-terminal ligand binding
domain (LBD).
Length = 189
Score = 26.7 bits (59), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 19 DQTESLVRGFYEVVDPRLVSVFDARE 44
DQ L G +EV+ R S+FDA+E
Sbjct: 45 DQVTLLKAGTFEVLMVRFASLFDAKE 70
>gnl|CDD|217778 pfam03884, DUF329, Domain of unknown function (DUF329). The
function of this short domain is unknown it contains
four conserved cysteines and may therefore be involved
in zinc binding.
Length = 57
Score = 25.0 bits (55), Expect = 6.1
Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 55 IDLGDWASNTEYR 67
IDLG WAS EYR
Sbjct: 31 IDLGAWASE-EYR 42
>gnl|CDD|220597 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members
of this family of prokaryotic proteins include various
putative virulence factor effector proteins. Their exact
function is, as yet, unknown.
Length = 852
Score = 26.6 bits (59), Expect = 7.4
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 71 HDGHPVIQWFWQA-----IERFTNEQRLRLLQFVTGTSS 104
++ +P+ Q + ER+T+EQ + +L T TS
Sbjct: 346 NEPNPLAQLLLRGKVAYLFERYTDEQEMNVLLVCTATSK 384
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.437
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,177,251
Number of extensions: 844474
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 22
Length of query: 171
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 81
Effective length of database: 6,945,742
Effective search space: 562605102
Effective search space used: 562605102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)