RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14609
(171 letters)
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 374
Score = 181 bits (460), Expect = 3e-57
Identities = 86/160 (53%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDPRLVSVFDARELELVIAGTAEIDLGDWASNTE 65
+ WR RGV +QT++ + GF EVV + + FD +ELE+++ G E+DL DW NT
Sbjct: 215 GLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTV 274
Query: 66 YRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIE 125
YR Y I WFWQ ++ NE R+RLLQFVTGT +P GF+ L GS GP+KFCIE
Sbjct: 275 YRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIE 333
Query: 126 KWGKPNSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVEET 165
K GK LPR+HTCFNRLDLPPY + E L EKLL A+EET
Sbjct: 334 KVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 163 bits (413), Expect = 2e-50
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDPRLV-SVFDARELELVIAGTAEIDLGDWASNT 64
+ L + V Q ++ RGF+ V + + +F E+EL+I G+ +D T
Sbjct: 196 NLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETT 255
Query: 65 EYRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCI 124
EY GY +I+ FW+ + FT+EQ+ LQF TGT P G L K I
Sbjct: 256 EYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL-------KMII 308
Query: 125 EKWGKP-NSLPRAHTCFNRLDLPPYPTPEVLYEKLLLAVE 163
K G LP +HTCFN L LP Y + E L E+LL A+
Sbjct: 309 AKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAIT 348
>d1xkpa1 a.243.1.3 (A:73-269) Outer membrane protein yopN (LcrE)
{Yersinia pestis [TaxId: 632]}
Length = 197
Score = 30.6 bits (69), Expect = 0.061
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 66 YRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKF 122
YR + + +RF N ++ F+ S + + +G K
Sbjct: 130 YRDAVMGYQGIYAIWSDLQKRFPNGDIDSVILFLQKALSADL---QSQQSGSGREKL 183
>d2vmha1 b.18.1.33 (A:906-1050) Uncharacterized Protein CPF2129
{Clostridium perfringens [TaxId: 1502]}
Length = 145
Score = 24.5 bits (53), Expect = 4.9
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 37 VSVFDARELELVIAGTAEIDLGDWAS 62
V + L+LV+ + D S
Sbjct: 113 VPIAGKNTLKLVVKDGGDSIGSDHGS 138
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha
subunit {Cow (Bos taurus) [TaxId: 9913]}
Length = 107
Score = 24.2 bits (52), Expect = 5.4
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 71 HDGHPVIQWFWQAIERFTNEQRLRLLQ---FVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
HD W + R E LR + F+ SS ++ + I K
Sbjct: 6 HDEKT---WNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKT 62
Query: 128 GKPNSLPRAHTCFNRLD 144
+ ++ L
Sbjct: 63 ATGYGFAEPYNLYSSLK 79
>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 24.2 bits (52), Expect = 5.5
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 11/57 (19%)
Query: 71 HDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
H+ P W+ ++ R E++L S +G LR + +
Sbjct: 26 HERMP---WYHSSLTREEAERKLY--------SGAQTDGKFLLRPRKEQGTYALSLI 71
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 25.0 bits (54), Expect = 6.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 60 WASNTEYRSGYHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRG 115
S T+Y +G+ D I Q F ++ R L+ +TG P+ + LRG
Sbjct: 204 VHSVTKYINGHGDVIGGIIVGKQE---FIDQARFVGLKDITGGCMSPFNAWLTLRG 256
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805)
{Thermus thermophilus [TaxId: 274]}
Length = 127
Score = 24.1 bits (52), Expect = 7.7
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 6 KRIVRWRLERGVADQTESLVRGFYEVVDP----RLVSVFDARELELVIAGTAEID 56
+V L +G E+ VV P L+ + L+ V+A D
Sbjct: 75 SELVGLLLAQGARRFYEA-------VVSPGEMTALLDLPPEELLKRVMAIANPTD 122
>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 23.9 bits (51), Expect = 9.1
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 11/58 (18%)
Query: 70 YHDGHPVIQWFWQAIERFTNEQRLRLLQFVTGTSSVPYEGFSALRGSTGPRKFCIEKW 127
H+ P WF I R +EQ + + G + R + +
Sbjct: 25 AHEKMP---WFHGKISREESEQIVLIGSKTNGKFLI--------RARDNNGSYALCLL 71
>d1lmqa_ d.2.1.2 (A:) Lysozyme {Rainbow trout (Oncorhynchus
mykiss) [TaxId: 8022]}
Length = 129
Score = 23.7 bits (51), Expect = 9.9
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 42 AREL-ELVIAGTAEIDLGDWASNTEYRSGY 70
AR L + G A L +W +++ S Y
Sbjct: 9 ARALKASGMDGYAGNSLPNWVCLSKWESSY 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.437
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 704,394
Number of extensions: 31926
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 12
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)