RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1461
         (189 letters)



>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
          Length = 447

 Score = 30.1 bits (68), Expect = 0.70
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 65  TRIFFDTFFNLEKYLDH 81
           TR FFD FF+LE +  H
Sbjct: 380 TRRFFDAFFDLEPHYWH 396


>gnl|CDD|219345 pfam07243, Phlebovirus_G1, Phlebovirus glycoprotein G1.  This
           family consists of several Phlebovirus glycoprotein G1
           sequences. Members of the Bunyaviridae family acquire an
           envelope by budding through the lipid bilayer of the
           Golgi complex. The budding compartment is thought to be
           determined by the accumulation of the two heterodimeric
           membrane glycoproteins G1 and G2 in the Golgi.
          Length = 527

 Score = 28.3 bits (63), Expect = 2.4
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 34  PFEDCLCQ--MLDMIKPEVPGK----ISLQDLKRCKM-----TRIFFDTFFNLEK-YLDH 81
           P +D  CQ    D   P+   K    I L   K CK        + F  F N  K Y++ 
Sbjct: 141 PLQDMFCQKNSDDYSGPKRYSKGVCKIGLHTYKECKTGTTNFEVVPFIVFKNKGKMYIEQ 200


>gnl|CDD|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated.
          Length = 971

 Score = 28.3 bits (63), Expect = 3.1
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 9   LSMYELEYFYDEQLQRMDAIGIECLPFEDCLCQML--------DMIKPEVPGKISLQDLK 60
           LS Y +EY     L +MD +G++ L   D + +++        D+    +  K   +DL 
Sbjct: 467 LSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKLIKENQNKKIDLFNINLNDKNVFEDLA 526

Query: 61  RCKMTRIF 68
           + +   IF
Sbjct: 527 KGRTNGIF 534


>gnl|CDD|220906 pfam10926, DUF2800, Protein of unknown function (DUF2800).  This is
           a family of uncharacterized proteins found in bacteria
           and viruses. Some members of this family are annotated
           as being Phi APSE P51-like proteins.
          Length = 363

 Score = 27.3 bits (61), Expect = 4.8
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 11/49 (22%)

Query: 75  LEKYLDHEQRDPFASQRDDDTLSSRMIDRIFSGTVTRSKHVMTYTEFVW 123
           L K LD   +    S+ D + +   M +           +V  Y +FV 
Sbjct: 47  LRKGLDAITKLGRNSEADGEYVDEEMAE-----------YVQEYVDFVR 84


>gnl|CDD|235043 PRK02492, PRK02492, deoxyhypusine synthase-like protein;
           Provisional.
          Length = 347

 Score = 26.9 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 3/25 (12%)

Query: 81  HEQRDPFASQRDDDTLSSRMIDRIF 105
           H Q  PF    DD  L    IDRI+
Sbjct: 110 HYQGSPFV---DDAVLRDLYIDRIY 131


>gnl|CDD|150071 pfam09279, efhand_like, Phosphoinositide-specific phospholipase C,
           efhand-like.  Members of this family are predominantly
           found in phosphoinositide-specific phospholipase C. They
           adopt a structure consisting of a core of four alpha
           helices, in an EF like fold, and are required for
           functioning of the enzyme.
          Length = 83

 Score = 25.6 bits (57), Expect = 7.5
 Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 74  NLEKYLDHEQRDPFASQRDDDTLSSRMIDRIFSGTVTRSKHVMTYTEFVWFLLAEE 129
            L ++L+ EQ+DP    R  +  +  +I++       + +  ++   F  +L ++E
Sbjct: 20  ELRRFLNEEQKDP----RLTEEQALAIIEKYEPNEEAKKRGQLSLDGFTRYLFSDE 71


>gnl|CDD|233633 TIGR01913, bet_lambda, phage recombination protein Bet.  This model
           represents the phage recombination protein Bet from a
           number of phage, including phage lambda. All members of
           this family are found in phage genomes or in putative
           prophage regions of bacterial genomes [Mobile and
           extrachromosomal element functions, Prophage functions].
          Length = 188

 Score = 26.4 bits (58), Expect = 7.8
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 11/72 (15%)

Query: 81  HEQRDPF-ASQRDDDTLSSRMIDRIFSGTVTRSKHVMTYTEFVWFLLAEEDKTHPRAIEY 139
            EQ D F   +R+D+            G V   +  +            +D+    AI  
Sbjct: 86  TEQYDGFIKVERNDEGCEIE-------GVVKIRQDALCGGWAEVM---GKDRRERFAISV 135

Query: 140 WFRSRKTEAAFP 151
            F + K      
Sbjct: 136 PFDAYKMWEDSG 147


>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase.
          Length = 876

 Score = 26.8 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 36  EDCLCQMLDMIKPEVPGKISLQDLKRCKMTRIFFDTFF 73
           ED    +L MI   + G+IS  +  R  + RIFF  FF
Sbjct: 320 EDISLSLLRMISYNI-GQISYLNALRFGLKRIFFGGFF 356


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0808    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,013,355
Number of extensions: 932188
Number of successful extensions: 926
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 27
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.2 bits)