RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1461
(189 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 5e-04
Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 52/200 (26%)
Query: 14 LEYFYDEQLQRMDAIGIECLPFEDC--LCQMLDMIKPEVPGKISLQDLKR--CKMT---- 65
++ ++L + + L + + L + P I L +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDV 404
Query: 66 RIFFDTFFN---LEK-------YLDHEQRDPFASQRDDDTLSSRMIDRIFSGTVTRSKHV 115
+ + +EK + + ++ L ++D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH------------ 452
Query: 116 MTYTEFVWFLLAEEDKTHPRAIEYWF--------RSRKTE--AAFP--YIDFNFLLQML- 162
Y F +D P +Y++ E F ++DF FL Q +
Sbjct: 453 --YNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 163 -DMIKPEVPGKIS--LQDLK 179
D G I LQ LK
Sbjct: 509 HDSTAWNASGSILNTLQQLK 528
Score = 33.3 bits (75), Expect = 0.046
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 36/142 (25%)
Query: 3 LDGDGYLSMYELEYFYD---------EQLQRMDAIGIECLPFEDCLCQMLDM--IKPEVP 51
D D + Y +YFY E +RM F LD ++
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-------FRMVF---LDFRFLE---- 504
Query: 52 GKISLQDLKRCKMTRIFFDTFFNLEKYLDHEQRDPFASQRDDDTLSSRMIDRI--FSGTV 109
KI I +T L+ Y + D+D R+++ I F +
Sbjct: 505 QKIRHDSTAWNASGSIL-NTLQQLKFYKPY--------ICDNDPKYERLVNAILDFLPKI 555
Query: 110 TRSKHVMTYTEFVWFLLAEEDK 131
+ YT+ + L ED+
Sbjct: 556 EENLICSKYTDLLRIALMAEDE 577
Score = 26.7 bits (58), Expect = 5.4
Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 38/165 (23%)
Query: 34 PFEDCLCQMLDMIK-PEVPGKISLQDLKRCKM---TRIFFDTFFNLEKYLDHEQRDPFAS 89
P+E+CL +L ++ + + +L CK+ TR + +L +
Sbjct: 242 PYENCLL-VLLNVQNAKA---WNAFNL-SCKILLTTR---FK--QVTDFLSAATTTHISL 291
Query: 90 QRDDDTLSSRMIDRIFSGTVTRSKH-----VMTYTEFVWFLLAEEDKTHPRAIEYWFRSR 144
TL+ + + + V+T ++AE + + W
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW---- 347
Query: 145 KTEAAFPYIDFNFLLQMLDMIKPEVPGKISLQDLKRCKMTRIFFD 189
+++ + L +++ SL L+ + ++F
Sbjct: 348 ------KHVNCDKLTTIIES---------SLNVLEPAEYRKMFDR 377
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 31.8 bits (72), Expect = 0.097
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 2 DLDGDGYLSMYELEYFYDEQLQRMDAIGIECLPFEDCLCQMLDMIKPEVPGKISLQDLKR 61
D D G++ EL+ F + L++ + + E ML + GK+ L ++ R
Sbjct: 113 DTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYT-DLMLKLFDSNNDGKLELTEMAR 171
Query: 62 CKMTRIFFDTFFNLEKYLDHEQRDPF 87
+ F F K E F
Sbjct: 172 LLPVQENFLLKFQGIKMCGKEFNKAF 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.29
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 35/105 (33%)
Query: 34 PF-EDCLCQMLDMIKPEVPGK---ISLQDLKRCKMTRI-FFDTFFNLEKYLDHEQRDPFA 88
PF L D+I ++ + +D++ I +DTF + D
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQ------IPVYDTF---------DGSDL-- 468
Query: 89 SQRDDDTLSSRMIDRIFSGTVTRSKHVMTYTEFVWFLLAEEDKTH 133
+ ++S R++D I V W + TH
Sbjct: 469 -RVLSGSISERIVDCIIRLPV----K--------WETTTQFKATH 500
Score = 30.4 bits (68), Expect = 0.39
Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 89/219 (40%)
Query: 15 EYFYDEQLQRMDAIGIECLPFEDCLCQMLDMIKPEVPGKISLQDLKRCKM-TRIFFDTFF 73
+YF +E L+ + + D + + L +L R + F
Sbjct: 168 DYF-EE-LRDLYQTYHVLV--GDLIKFSAET----------LSELIRTTLDAEKVFTQGL 213
Query: 74 NLEKYLDHEQRDPFASQRDDDTLSS--------------------RMID-------RIFS 106
N+ ++L++ P D D L S +++
Sbjct: 214 NILEWLENPSNTP-----DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 107 GTVTRSKHVMTYTEFVWFLLAEED------KTHPRAIEYWF----RSRKTEAAFPYIDFN 156
G S+ ++T +AE D + +AI F R + A+P
Sbjct: 269 GATGHSQGLVTAV-----AIAETDSWESFFVSVRKAITVLFFIGVRCYE---AYPNTSLP 320
Query: 157 F-LLQ------------MLDMIKPEVPGKISLQDLKRCK 182
+L+ ML S+ +L + +
Sbjct: 321 PSILEDSLENNEGVPSPML-----------SISNLTQEQ 348
Score = 28.1 bits (62), Expect = 2.3
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 37 DCLCQMLDMIK------PEVPGKISLQDLK 60
D + +L+ IK E+ +SL++++
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 29.5 bits (65), Expect = 0.66
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 3/112 (2%)
Query: 20 EQLQRMDAIGIECLPFED--CLCQMLDMIKPEVPGKISLQDLKRCKMTRIFFDTFFNLEK 77
+ DAI ++ F+ L + + E+ G + +T + F F N +
Sbjct: 200 WPSGKNDAIDLKAFDFDTFFKFYLAL-LERSEIEGIFKELSKNKGNITTVMFRDFLNDMQ 258
Query: 78 YLDHEQRDPFASQRDDDTLSSRMIDRIFSGTVTRSKHVMTYTEFVWFLLAEE 129
+ F D + + K +T ++FL+ EE
Sbjct: 259 RHPSLHKTLFPLYTDAQCEALINDYESAVNKKGKKKGQLTKEGLLYFLMCEE 310
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 29.2 bits (64), Expect = 0.87
Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 1 MDLDGDGYLSMYELEYFYDEQLQRMDAIGIEC-LPFEDCLCQMLDMIKPEVPGKISLQDL 59
+ ++ DG + + + + +R++ C L F D E+ + +
Sbjct: 161 LQVNQDGRIPVKNILKMFSADKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLC 220
Query: 60 KRCKMTRIFFD---------TFFNLEKYLDHEQRDPFAS----QRDDDTLSSRMIDRIFS 106
R + +I + T L +++ +QRDP + + + +I++
Sbjct: 221 LRPDIDKILLEIGAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEP 280
Query: 107 GTVTRSKHVMTYTEFVWFLLAEE 129
+ M+ F +L EE
Sbjct: 281 NQQFLERDQMSMEGFSRYLGGEE 303
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 27.6 bits (62), Expect = 1.6
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 25/86 (29%)
Query: 1 MDLDGDGYLSMYELEYFY---------DEQLQRMDAIGIECLPFEDCLCQMLDMIKPEVP 51
+D + DG + +L + +E+L M + F L + +K P
Sbjct: 34 IDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADP 93
Query: 52 ----------------GKISLQDLKR 61
G I L+
Sbjct: 94 EDVIMGAFKVLDPDGKGSIKKSFLEE 119
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 27.0 bits (60), Expect = 3.2
Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 17/119 (14%)
Query: 1 MDLDGDGYLSMYELEYFYDEQLQRMDAIGIECLPFEDCLCQMLDMIKPEVPGKISLQDLK 60
+D + GYLS LQ++ A+ + P D ++++ P+ ++
Sbjct: 38 LDRNKKGYLSR--------MDLQQIGALAVN--PLGD---RIIESFFPDGSQRVDFPGF- 83
Query: 61 RCKMTRIFFDTFFNLEKYLDHEQRDPFASQRDDDTLSSRMIDRIFSGTVTRS--KHVMT 117
++ F + D ++ +P S+R+ + ++ D G ++R V+
Sbjct: 84 -VRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLR 141
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 27.2 bits (59), Expect = 3.9
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 69 FDTFFNLEKYLDHEQRDPFASQRD----DDTLSSRMIDRIFSGTVTRSKHVMTYTEFVWF 124
+ T +L K+++ +QRD + +ID+ + + ++ VWF
Sbjct: 235 YMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVWF 294
Query: 125 LLAEEDKTHP 134
L E+
Sbjct: 295 LCGPENSVLA 304
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 26.8 bits (59), Expect = 5.0
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 28/89 (31%)
Query: 1 MDLDGDGYLSMYEL--------EYFYDEQLQRM----DAIGIECLPFEDCLCQMLDMIKP 48
D DGDG ++ EL + + +LQ M DA G + F + L M +K
Sbjct: 321 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD 380
Query: 49 EVP----------------GKISLQDLKR 61
G IS +L+
Sbjct: 381 TDSEEEIREAFRVFDKDGNGYISAAELRH 409
>2hps_A Coelenterazine-binding protein with bound coelent;
bioluminescence, southeast collabora structural
genomics, secsg, structural genomics, PSI; HET: CTZ;
1.72A {Renilla muelleri} PDB: 2hq8_A
Length = 186
Score = 26.2 bits (58), Expect = 5.3
Identities = 9/58 (15%), Positives = 23/58 (39%)
Query: 1 MDLDGDGYLSMYELEYFYDEQLQRMDAIGIECLPFEDCLCQMLDMIKPEVPGKISLQD 58
+D+ GDG++S + E + + ++ D + +IS+++
Sbjct: 23 VDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEE 80
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 26.2 bits (58), Expect = 5.9
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 1 MDLDGDGYLSMYELEYFYDEQLQRMDAIG 29
+D GDG +++ +L Y + G
Sbjct: 118 LDRSGDGVVTVDDLRGVYSGRAHPKVRSG 146
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 25.8 bits (56), Expect = 7.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 1 MDLDGDGYLSMYELEYFYDEQLQRMDA 27
MD D DG + + E + F E ++ DA
Sbjct: 24 MDDDKDGGIEVEESDEFIREDMKYKDA 50
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 25.8 bits (56), Expect = 9.0
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 2 DLDGDGYLSMYELEYFYDEQLQRMDAIGIECLPFEDCLCQMLDMIKPEVPGKISLQDLKR 61
D D GY+S EL+ F + L I ++ M+ + G++ L DL R
Sbjct: 114 DADSSGYISAAELKNFLKD-LFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLAR 172
Query: 62 CKMTRIFFDTFFNLEKYLDHEQRDPF 87
+ F F ++ E++ F
Sbjct: 173 ILALQENFLLQFKMDASSQVERKRDF 198
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 24.9 bits (55), Expect = 9.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 1 MDLDGDGYLSMYELEYFYDEQLQRMDAIGIEC 32
+D D G++ EL+ F LQ A
Sbjct: 51 IDQDKSGFIEEDELKLF----LQVFSAGARAL 78
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 24.9 bits (54), Expect = 9.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 1 MDLDGDGYLSMYELEYFYDEQLQRM 25
D++ DG L ELE + ++L+++
Sbjct: 29 HDINSDGVLDEQELEALFTKELEKV 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.440
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,055,670
Number of extensions: 177832
Number of successful extensions: 816
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 157
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)