BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14612
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 100/175 (57%), Gaps = 37/175 (21%)
Query: 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQI 60
M + D K +L+ +FD E GLDYGG +RE+FFL+S+++FNPYYGLFEYSA D YT+QI
Sbjct: 47 MGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATDNYTLQI 106
Query: 61 SPMSAFVDN-----------------------------------YHEPVALSDLESLDNE 85
+P S + H+P+ L D+ES+D+E
Sbjct: 107 NPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSE 166
Query: 86 FHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
++ SL WI E+D T LDL F + EE+FGQ + ELK GG I VT KNKK Y+
Sbjct: 167 YYNSLRWILENDPTE--LDLRFIIDEELFGQTHQHELKNGGSEIVVTNKNKKEYI 219
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 101/175 (57%), Gaps = 37/175 (21%)
Query: 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQI 60
M + D+ K +L+ +F+SE GLDYGG +RE+FFLLS+++FNPYYGLFEYSA D YT+QI
Sbjct: 46 MSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQI 105
Query: 61 SPMSAFVDNYH-----------------------------------EPVALSDLESLDNE 85
+P S + H + + L+D+ES+D+E
Sbjct: 106 NPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSE 165
Query: 86 FHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
++ SL WI E+D T LDL F + EE FGQ + +LKP G I VT +NK+ Y+
Sbjct: 166 YYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYI 218
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 101/175 (57%), Gaps = 37/175 (21%)
Query: 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQI 60
M + D+ K +L+ +F+SE GLDYGG +RE+FFLLS+++FNPYYGLFEYSA D YT+QI
Sbjct: 46 MSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQI 105
Query: 61 SPMSAFVDNYH-----------------------------------EPVALSDLESLDNE 85
+P S + H + + L+D+ES+D+E
Sbjct: 106 NPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSE 165
Query: 86 FHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
++ SL WI E+D T LDL F + EE FGQ + +LKP G I VT +NK+ Y+
Sbjct: 166 YYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYI 218
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 98/173 (56%), Gaps = 37/173 (21%)
Query: 3 ASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISP 62
+ D+ K +L+ +F+SE GLDYGG +RE+FFLLS++ FNPYYGLFEYSA D YT+QI+P
Sbjct: 63 VKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEXFNPYYGLFEYSATDNYTLQINP 122
Query: 63 MSAFVDNYH-----------------------------------EPVALSDLESLDNEFH 87
S + H + + L+D ES+D+E++
Sbjct: 123 NSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYY 182
Query: 88 QSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
SL WI E+D T LDL F + EE FGQ + +LKP G I VT +NK+ Y+
Sbjct: 183 NSLKWILENDPTE--LDLXFCIDEENFGQTYQVDLKPNGSEIXVTNENKREYI 233
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 99/174 (56%), Gaps = 36/174 (20%)
Query: 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQI 60
M + +DL K +L +FD E+GLDYGG SREFFFLLS ++FNP+Y LFEYSA D YT+QI
Sbjct: 93 MRQTPEDLKK-RLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQI 151
Query: 61 SPMSA------------------------FVDNY----------HEPVALSDLESLDNEF 86
+P S F+D + + V L D+E +D E
Sbjct: 152 NPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV 211
Query: 87 HQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
+ SL W+ E+ + + VLDL F+ +E FG+ +LKP GRNI VT+ NKK YV
Sbjct: 212 YNSLNWMLENSI-DGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYV 264
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 35/174 (20%)
Query: 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQI 60
M S +DL + +L+ F E+GLDYGG +RE+FFLLS ++ NP Y LFEY+ D Y +QI
Sbjct: 61 MSFSPQDLRR-RLWVIFPGEEGLDYGGVAREWFFLLSHEVSNPMYCLFEYAGKDNYCLQI 119
Query: 61 SPMS------------------------AFVDN----------YHEPVALSDLESLDNEF 86
+P S F+D ++PV L DLES+D EF
Sbjct: 120 NPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEF 179
Query: 87 HQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
+ SL+W+KE+++ L++ F+V +EI G+ K +LKP G NI VTE+NK+ Y+
Sbjct: 180 YNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYI 233
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 94/169 (55%), Gaps = 36/169 (21%)
Query: 6 KDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSA 65
KDL K +L +F E+GLDYGG +RE+ +LLS + NPYYGLF+YS +D YT+QI+P SA
Sbjct: 48 KDLWK-RLXIKFRGEEGLDYGGVAREWLYLLSHEXLNPYYGLFQYSRDDIYTLQINPDSA 106
Query: 66 ----------FVDN------YH------------------EPVALSDLESLDNEFHQSLL 91
FV +H + + L D E +D + H SL+
Sbjct: 107 VNPEHLSYFHFVGRIXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPDLHNSLV 166
Query: 92 WIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
WI E+D+T VLD F V +G+ + ELKP G++I V E+NKK YV
Sbjct: 167 WILENDITG-VLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYV 214
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 34/163 (20%)
Query: 12 KLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSA------ 65
+LY F E+GLDYGG +RE+FFLLS ++ NP Y LFEY+ + Y +QI+P S
Sbjct: 52 RLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHL 111
Query: 66 ------------------FVDN----------YHEPVALSDLESLDNEFHQSLLWIKEHD 97
F+D + + + DLES+D EF+ SL+WI++++
Sbjct: 112 SYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNN 171
Query: 98 VTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
+ L++ F+V EI G+ +LK GG NI VTE+NK Y+
Sbjct: 172 IEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYI 214
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 34/165 (20%)
Query: 10 KCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMS----- 64
K +LY F+ E+G D GG RE++ ++SR++FNP Y LF S D T I+P S
Sbjct: 74 KNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHANPN 133
Query: 65 --------------AFVDN---------------YHEPVALSDLESLDNEFHQSLLWIKE 95
A DN + V +D+ES D F+Q L+++ E
Sbjct: 134 HLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLE 193
Query: 96 HDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
+DV+ DL F+ + FG A+ R+LKP G NI VTE+NKK YV
Sbjct: 194 NDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYV 238
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 34/165 (20%)
Query: 10 KCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMS----- 64
K +LY F+ E+G D GG RE++ ++SR++FNP Y LF S D T I+P S
Sbjct: 57 KNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPN 116
Query: 65 --------------AFVDN---------------YHEPVALSDLESLDNEFHQSLLWIKE 95
A DN + V +D+ES D F+Q L+++ E
Sbjct: 117 HLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLE 176
Query: 96 HDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
+DV+ DL F+ + FG + R+LKP G NI VTE+NKK YV
Sbjct: 177 NDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYV 221
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 36/165 (21%)
Query: 10 KCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMS----- 64
K +LY +F+ E G+D GG S+EFF L+ ++FNP G+F Y + T +P S
Sbjct: 35 KKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDES-TKLFWFNPSSFETEG 93
Query: 65 -----------AFVDN----YHEPVAL-----------SDLESLDNEFHQSL--LWIKEH 96
A +N H P+ + DL +QSL L E
Sbjct: 94 QFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG 153
Query: 97 DVTNEVLDLNFAVTE-EIFGQAKERELKPGGRNIAVTEKNKKTYV 140
+V ++++ + F +++ ++FG +LK G I +T +N+K +V
Sbjct: 154 NVEDDMM-ITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFV 197
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 81 SLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGG 126
SLD +LW+ E+++T V I GQ ER+LK G
Sbjct: 257 SLDTSQMNRILWVDENNLTAH-------VEAGITGQELERQLKESG 295
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 81 SLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGG 126
SLD +LW+ E+++T V I GQ ER+LK G
Sbjct: 257 SLDTSQMNRILWVDENNLTAH-------VEAGITGQELERQLKESG 295
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 81 SLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGG 126
SLD +LW+ E+++T V I GQ ER+LK G
Sbjct: 257 SLDTSQMNRILWVDENNLTAH-------VEAGITGQELERQLKESG 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,432,382
Number of Sequences: 62578
Number of extensions: 173383
Number of successful extensions: 445
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 28
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)