Query psy14612
Match_columns 140
No_of_seqs 120 out of 1102
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 16:11:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5021 HUL4 Ubiquitin-protein 100.0 2.6E-36 5.7E-41 265.4 9.3 138 1-140 533-705 (872)
2 KOG0941|consensus 100.0 2.8E-34 6.1E-39 247.5 11.2 136 3-140 522-690 (850)
3 KOG0939|consensus 100.0 1.5E-34 3.3E-39 245.2 8.5 137 2-140 383-553 (720)
4 cd00078 HECTc HECT domain; C-t 100.0 8.2E-34 1.8E-38 230.5 11.9 137 3-140 21-192 (352)
5 smart00119 HECTc Domain Homolo 100.0 4.1E-33 8.9E-38 225.5 11.5 135 3-140 2-174 (336)
6 KOG0942|consensus 100.0 2.2E-31 4.8E-36 230.9 10.6 134 4-140 661-838 (1001)
7 KOG4427|consensus 99.9 4E-28 8.7E-33 207.9 7.4 134 5-140 734-908 (1096)
8 KOG0940|consensus 99.9 2.8E-25 6.1E-30 180.5 0.1 135 1-140 35-202 (358)
9 PF00632 HECT: HECT-domain (ub 99.7 4.1E-17 9E-22 130.4 6.4 106 34-140 1-152 (317)
10 KOG0170|consensus 99.6 6.1E-16 1.3E-20 129.0 4.2 125 10-140 250-452 (621)
11 KOG0943|consensus 97.9 4.5E-06 9.8E-11 76.5 2.1 67 73-140 2778-2851(3015)
12 KOG0943|consensus 65.9 7.3 0.00016 37.7 3.5 32 10-42 2485-2516(3015)
13 PF01281 Ribosomal_L9_N: Ribos 43.7 12 0.00026 21.9 0.8 19 121-139 29-47 (48)
14 COG4917 EutP Ethanolamine util 42.4 63 0.0014 23.3 4.4 91 8-99 27-121 (148)
15 PF14551 MCM_N: MCM N-terminal 31.4 31 0.00066 23.0 1.4 19 73-91 34-52 (121)
16 PF12116 SpoIIID: Stage III sp 30.1 60 0.0013 21.3 2.5 20 77-96 42-61 (82)
17 COG4004 Uncharacterized protei 22.9 48 0.001 22.3 1.1 22 118-139 34-55 (96)
No 1
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-36 Score=265.38 Aligned_cols=138 Identities=50% Similarity=0.863 Sum_probs=128.8
Q ss_pred CCCChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcCC--------
Q psy14612 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE-------- 72 (140)
Q Consensus 1 ~~~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~-------- 72 (140)
|..++.++ ++.|.|+|.||+|+|+||++||||.++++++|+|+++||.++.++.+.++|||.+..+++||.
T Consensus 533 ~~~~~~~~-k~~L~i~F~~EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~~~~n~~s~~npe~L~yf~fiGrv 611 (872)
T COG5021 533 MDESGDDL-KKTLEIEFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYTLPINPLSSINPEHLSYFKFLGRV 611 (872)
T ss_pred HHhchhhh-cceEEEEecCcccccCCccchHHHHHHhHHhcCCcccceeeecccccccCcCccccCCHHHHHHHHHHHHH
Confidence 34566777 568999999999999999999999999999999999999999998888999999887777763
Q ss_pred --------------------------CCChhhHHhhCHHHHHHHHHHHhcCCCcc-ceeeEEEEEeeeCCeeEEEEccCC
Q psy14612 73 --------------------------PVALSDLESLDNEFHQSLLWIKEHDVTNE-VLDLNFAVTEEIFGQAKERELKPG 125 (140)
Q Consensus 73 --------------------------~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e-~l~l~F~~~~~~~G~~~~veL~~~ 125 (140)
|++++|++++||++|++|.||++++++ + .+++||++..+.+|..++||||||
T Consensus 612 IGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d-~~~l~l~Fsve~~~fg~~~tVeLipn 690 (872)
T COG5021 612 IGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDID-ETILDLTFTVEDDSFGESRTVELIPN 690 (872)
T ss_pred HHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCC-cceeeeeEEEeecccCceeEEEeccC
Confidence 999999999999999999999999998 6 999999999999999999999999
Q ss_pred CCccccCcchHhhcC
Q psy14612 126 GRNIAVTEKNKKTYV 140 (140)
Q Consensus 126 G~~i~VT~~N~~eYV 140 (140)
|++|+||++||++||
T Consensus 691 G~ni~VT~~Nk~eYV 705 (872)
T COG5021 691 GRNISVTNENKKEYV 705 (872)
T ss_pred CccccccchHHHHHH
Confidence 999999999999997
No 2
>KOG0941|consensus
Probab=100.00 E-value=2.8e-34 Score=247.52 Aligned_cols=136 Identities=34% Similarity=0.590 Sum_probs=117.9
Q ss_pred CChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccC-------------
Q psy14612 3 ASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDN------------- 69 (140)
Q Consensus 3 ~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~------------- 69 (140)
++..|| ||+|+|+|.||+|+|+|||+||||.++.+||++|++|||++.+++ ..+|++|.....++
T Consensus 522 ~~~~Dl-~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s-~~~WF~~~~~~~~~~y~liGil~GLAI 599 (850)
T KOG0941|consen 522 ISMSDL-KKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEES-SLLWFNPSPFEEEKQYHLIGILCGLAI 599 (850)
T ss_pred hhhhhh-hcceEEEECCCcccccCchHHHHHHHHHHHHcCccccCeeccccc-ceeeecCCCCCccceeeehhHHHHHHH
Confidence 355688 689999999999999999999999999999999999999999876 46777765321111
Q ss_pred --------cC----------CCCChhhHHhhCHHHHHHHHHHHhcCC-C-ccceeeEEEEEeeeCCeeEEEEccCCCCcc
Q psy14612 70 --------YH----------EPVALSDLESLDNEFHQSLLWIKEHDV-T-NEVLDLNFAVTEEIFGQAKERELKPGGRNI 129 (140)
Q Consensus 70 --------~l----------~~~~l~DL~~~Dp~~~~sL~~ll~~~~-~-~e~l~l~F~~~~~~~G~~~~veL~~~G~~i 129 (140)
++ .|+|++||.++.|.+++||+.||++.. + .+.++|||++.++.+|..++++|+|||.+|
T Consensus 600 yN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~ed~f~l~F~i~~~~~g~~~~~~L~~nG~~i 679 (850)
T KOG0941|consen 600 YNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVEDVFDLTFQISQDDNGIPRTYELKPNGDEI 679 (850)
T ss_pred hccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccchhhheeeEEEEEehhcCccceeeccCCCccc
Confidence 11 199999999999999999999998754 2 388999999999999988999999999999
Q ss_pred ccCcchHhhcC
Q psy14612 130 AVTEKNKKTYV 140 (140)
Q Consensus 130 ~VT~~N~~eYV 140 (140)
+||++||+|||
T Consensus 680 ~vt~~Nr~efV 690 (850)
T KOG0941|consen 680 PVTNENRREFV 690 (850)
T ss_pred ccccccHHHHH
Confidence 99999999997
No 3
>KOG0939|consensus
Probab=100.00 E-value=1.5e-34 Score=245.22 Aligned_cols=137 Identities=42% Similarity=0.692 Sum_probs=128.6
Q ss_pred CCChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcCC---------
Q psy14612 2 LASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE--------- 72 (140)
Q Consensus 2 ~~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~--------- 72 (140)
..++++| +.++.|+|.||+|+|+|||.||||.++++++|+|+++||+..++++-+++|||.|..++.||.
T Consensus 383 ~~s~~e~-~~rl~I~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~~np~hLs~fkf~Grii 461 (720)
T KOG0939|consen 383 YKSPEEL-KTRLEVTFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGSDQTTFHPNPNSYVNPEHLSYFKFVGRII 461 (720)
T ss_pred hCCHHHH-hcceEEEEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCCCceEEeeCCcccCChhhhhHHHhhHHHH
Confidence 4688999 579999999999999999999999999999999999999999888778999999988887773
Q ss_pred -------------------------CCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeeeCCeeEEEEccCCCC
Q psy14612 73 -------------------------PVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGR 127 (140)
Q Consensus 73 -------------------------~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~~G~~~~veL~~~G~ 127 (140)
+++++|+++.||++|++|.||++++++ +.+++||+...+.+|..+++||+|||+
T Consensus 462 gKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~DP~y~k~l~~il~ndis-~~l~ltfs~e~~~~g~~~~~eL~p~G~ 540 (720)
T KOG0939|consen 462 GKALFDGQLLECYFTRSFYKHILGLPVTYHDMESADPEYYKSLVWILKNDIS-DTLELTFSEEDDEFGVESVVELKPGGA 540 (720)
T ss_pred HHHHhcchhhhheeeHHHHhhccCCceeeeehhhcChHHhhceeehhcCCcc-cceeEEEEEeeccccccceeecccCCC
Confidence 899999999999999999999999998 779999999999999888999999999
Q ss_pred ccccCcchHhhcC
Q psy14612 128 NIAVTEKNKKTYV 140 (140)
Q Consensus 128 ~i~VT~~N~~eYV 140 (140)
+|.||++||++||
T Consensus 541 ~i~Vt~~nK~~yv 553 (720)
T KOG0939|consen 541 KIYVTEANKQEYV 553 (720)
T ss_pred ceeeccccHHHHH
Confidence 9999999999997
No 4
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=8.2e-34 Score=230.48 Aligned_cols=137 Identities=44% Similarity=0.703 Sum_probs=119.8
Q ss_pred CChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcC-----------
Q psy14612 3 ASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH----------- 71 (140)
Q Consensus 3 ~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l----------- 71 (140)
+++.+| +++|+|+|.||.|+|+|||+||||+++|+|+++|+++||+.+++++..++|||.+...+.++
T Consensus 21 ~~~~~l-~~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~~~p~~~~~~~~~~~f~~~G~lig 99 (352)
T cd00078 21 VSSSDL-KKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKLFRFLGRLLG 99 (352)
T ss_pred cCHHHh-cCceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEEeCCCcccchhHHHHHHHHHHHHH
Confidence 455678 57999999999999999999999999999999999999999988445788999875321111
Q ss_pred -----------------------CCCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeee-CCeeEEEEccCCCC
Q psy14612 72 -----------------------EPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEI-FGQAKERELKPGGR 127 (140)
Q Consensus 72 -----------------------~~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~-~G~~~~veL~~~G~ 127 (140)
.+++++||+++||++|++|++|++++.+.+.++|+|++..+. .|...++||+|||+
T Consensus 100 ~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~l~F~~~~~~~~~~~~~veL~~~G~ 179 (352)
T cd00078 100 KALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELKPGGR 179 (352)
T ss_pred HHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhcceeEEEEeecCCCcceEecCCCCC
Confidence 199999999999999999999999876447899999998766 78889999999999
Q ss_pred ccccCcchHhhcC
Q psy14612 128 NIAVTEKNKKTYV 140 (140)
Q Consensus 128 ~i~VT~~N~~eYV 140 (140)
+++||.+|+++||
T Consensus 180 ~~~VT~~N~~eYv 192 (352)
T cd00078 180 DIPVTNENKEEYV 192 (352)
T ss_pred CCcCCHHHHHHHH
Confidence 9999999999997
No 5
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=4.1e-33 Score=225.52 Aligned_cols=135 Identities=54% Similarity=0.851 Sum_probs=115.2
Q ss_pred CChhhhcccc-eEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCccc-ccCcC---------
Q psy14612 3 ASKKDLAKCK-LYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAF-VDNYH--------- 71 (140)
Q Consensus 3 ~~~~~l~~~~-l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~-~~~~l--------- 71 (140)
.+..+| |++ |+|+|.||+|+|+|||+||||+++++++++|++|||+++++++ .++|+|.+.. .+.|+
T Consensus 2 ~~~~~~-~~~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~-~~~~~p~~~~~~~~~l~~f~~~G~l 79 (336)
T smart00119 2 SSDEDL-KKSVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDY-LLYPNPRAFFANPEHLAYFRFIGRV 79 (336)
T ss_pred CChHHh-CCCeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCC-eEEeCCCccccchHHHHHHHHHHHH
Confidence 356788 567 9999999999999999999999999999999999999998764 6788886532 12221
Q ss_pred -------------------------CCCChhhHHhhCHHHHHHHHHH-HhcCCCccceeeEEEEEe-eeCCeeEEEEccC
Q psy14612 72 -------------------------EPVALSDLESLDNEFHQSLLWI-KEHDVTNEVLDLNFAVTE-EIFGQAKERELKP 124 (140)
Q Consensus 72 -------------------------~~~~l~DL~~~Dp~~~~sL~~l-l~~~~~~e~l~l~F~~~~-~~~G~~~~veL~~ 124 (140)
.+++++||+++||++|++|++| ++++.. +.++++|++.. ...|...++||+|
T Consensus 80 ig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~-~~~~l~F~~~~~~~~g~~~~~eL~~ 158 (336)
T smart00119 80 LGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTS-EELDLTFSIVLTSEFGQVKVVELKP 158 (336)
T ss_pred HHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCc-ccccceEEEEeeecCCCcceEecCC
Confidence 1999999999999999999999 566665 67999999654 4477788999999
Q ss_pred CCCccccCcchHhhcC
Q psy14612 125 GGRNIAVTEKNKKTYV 140 (140)
Q Consensus 125 ~G~~i~VT~~N~~eYV 140 (140)
||++++||.+||++||
T Consensus 159 ~G~~~~Vt~~N~~eYv 174 (336)
T smart00119 159 GGSNIPVTEENKKEYV 174 (336)
T ss_pred CCCCCcCCHHHHHHHH
Confidence 9999999999999997
No 6
>KOG0942|consensus
Probab=99.97 E-value=2.2e-31 Score=230.90 Aligned_cols=134 Identities=34% Similarity=0.557 Sum_probs=118.0
Q ss_pred ChhhhcccceEEEEec-----ccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccc-----------
Q psy14612 4 SKKDLAKCKLYAQFDS-----EDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFV----------- 67 (140)
Q Consensus 4 ~~~~l~~~~l~V~F~g-----E~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~----------- 67 (140)
...|| |..++|+|++ |+|||+||++|||++.++++.|+|++|+|+.+++ +.++|||.+++.
T Consensus 661 ~e~dl-k~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~--~lLYPNp~~~~l~~~~~lkhy~F 737 (1001)
T KOG0942|consen 661 GEPDL-KSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETED--HLLYPNPTAAMLLDVDCLKHYYF 737 (1001)
T ss_pred CCccc-ccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeeccc--ceecCCCCchhhhhhHHHHHHHH
Confidence 34566 6789999996 7999999999999999999999999999999865 478999987531
Q ss_pred ----------cCcC-----------------CCCChhhHHhhCHHHHHHHHHHHhcCC-CccceeeEEEEEeeeCCeeEE
Q psy14612 68 ----------DNYH-----------------EPVALSDLESLDNEFHQSLLWIKEHDV-TNEVLDLNFAVTEEIFGQAKE 119 (140)
Q Consensus 68 ----------~~~l-----------------~~~~l~DL~~~Dp~~~~sL~~ll~~~~-~~e~l~l~F~~~~~~~G~~~~ 119 (140)
+..| ..++++||.++||++|++|..|++++. ++++|.|+|+|..+.+|..+.
T Consensus 738 LGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~~v 817 (1001)
T KOG0942|consen 738 LGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGERQV 817 (1001)
T ss_pred HHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEecccccccee
Confidence 1111 167999999999999999999999876 578999999999999999999
Q ss_pred EEccCCCCccccCcchHhhcC
Q psy14612 120 RELKPGGRNIAVTEKNKKTYV 140 (140)
Q Consensus 120 veL~~~G~~i~VT~~N~~eYV 140 (140)
|||+|||++|+||++||.+||
T Consensus 818 VeLkPnGs~i~VTneNvi~Yi 838 (1001)
T KOG0942|consen 818 VELKPNGSKIRVTNENVIEYI 838 (1001)
T ss_pred EEeccCCccceeechhhhhhh
Confidence 999999999999999999997
No 7
>KOG4427|consensus
Probab=99.95 E-value=4e-28 Score=207.86 Aligned_cols=134 Identities=33% Similarity=0.518 Sum_probs=121.1
Q ss_pred hhhhcccceEEEEec-----ccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcCC-------
Q psy14612 5 KKDLAKCKLYAQFDS-----EDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE------- 72 (140)
Q Consensus 5 ~~~l~~~~l~V~F~g-----E~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~------- 72 (140)
..-| |..++|+|++ |+|||.+||+|||+..+.+..|+|+++||..++.++ .++|.|.|...++||+
T Consensus 734 ~~al-Ks~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~-~LyPSPts~~~en~lqlfeFvGr 811 (1096)
T KOG4427|consen 734 SPAL-KSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDR-RLYPSPTSYHHENHLQLFEFVGR 811 (1096)
T ss_pred chhh-hceEEEEEecccCCcccccCccchHHHHHHHHHHHHhcccccccccCCCCc-eecCCchhhhhhchhHHHHHHHH
Confidence 3345 7899999997 688899999999999999999999999999988643 6789999987777763
Q ss_pred -----------------------------CCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeeeCCeeEEEEcc
Q psy14612 73 -----------------------------PVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELK 123 (140)
Q Consensus 73 -----------------------------~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~~G~~~~veL~ 123 (140)
...++.|.++||++|+||..++.++.+..+|||||+|+.+..|+..++||+
T Consensus 812 mlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~ 891 (1096)
T KOG4427|consen 812 MLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELK 891 (1096)
T ss_pred HHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEec
Confidence 447899999999999999999999998899999999999999999999999
Q ss_pred CCCCccccCcchHhhcC
Q psy14612 124 PGGRNIAVTEKNKKTYV 140 (140)
Q Consensus 124 ~~G~~i~VT~~N~~eYV 140 (140)
|||+.|.||++||-+||
T Consensus 892 PgGkt~sVtneNKi~YI 908 (1096)
T KOG4427|consen 892 PGGKTISVTNENKIQYI 908 (1096)
T ss_pred cCCcceeccccchHHHH
Confidence 99999999999999997
No 8
>KOG0940|consensus
Probab=99.90 E-value=2.8e-25 Score=180.54 Aligned_cols=135 Identities=49% Similarity=0.829 Sum_probs=125.8
Q ss_pred CCCChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcCC--------
Q psy14612 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE-------- 72 (140)
Q Consensus 1 ~~~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~-------- 72 (140)
|.+++++| |+.+-+.|.||+|.|.||+.||||.++++++|.|-+++|.++.++ +++|++|.+..++.||.
T Consensus 35 M~~~~~~~-~~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~-~tlq~~P~sg~~p~~l~~~~~vg~~ 112 (358)
T KOG0940|consen 35 MNPKPSDL-QKRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKD-YTLWLNPRSGVNPGHLTYFRFVGGV 112 (358)
T ss_pred hCCCchhh-hhcceeecccccccccCCCCcceeeeeccccCCcceeeeeecccc-cccccCCccCCCCCccccccccccc
Confidence 88999997 689999999999999999999999999999999999999999887 88999999887776652
Q ss_pred -------------------------CCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeeeCCeeEEEEccCCCC
Q psy14612 73 -------------------------PVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGR 127 (140)
Q Consensus 73 -------------------------~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~~G~~~~veL~~~G~ 127 (140)
+++++|++.+|+++|+++.|+++++.. . +++|+++...+|+....+|+|+|.
T Consensus 113 ~~l~~~h~~~~~~g~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en~~~-~--~~~f~~~~~~~g~~~~~~l~p~g~ 189 (358)
T KOG0940|consen 113 LALAGWHMRFTDTGQRPFYKHILKKTTTLDDREAVDPEFYNSLTWIRENDPT-N--DLTFSVESEVLGQITTQELKPNGA 189 (358)
T ss_pred ccccceeeEecCCCceehhhhhhcCccccCchhhcCccccccccccccCCcc-c--chhhhcchhhcCCccceeecCCCc
Confidence 889999999999999999999999987 4 999999999999999999999999
Q ss_pred ccccCcchHhhcC
Q psy14612 128 NIAVTEKNKKTYV 140 (140)
Q Consensus 128 ~i~VT~~N~~eYV 140 (140)
++.||.+|+++||
T Consensus 190 ~~~v~~~n~~~yi 202 (358)
T KOG0940|consen 190 NIQVTEENKKEYI 202 (358)
T ss_pred ccccccccHHHHH
Confidence 9999999999996
No 9
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.68 E-value=4.1e-17 Score=130.37 Aligned_cols=106 Identities=42% Similarity=0.586 Sum_probs=80.0
Q ss_pred HHHHHHhcCCCCCceEEecCCeeEEEeCCCcc-------cccC------------------------cC-----------
Q psy14612 34 FLLSRQLFNPYYGLFEYSANDTYTVQISPMSA-------FVDN------------------------YH----------- 71 (140)
Q Consensus 34 ~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~-------~~~~------------------------~l----------- 71 (140)
++||+|||+|++|||..++++. .++++|... ..+. +|
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g 79 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNG-LFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSG 79 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTC-EEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T
T ss_pred CHHHHHhcCccCCCceEcCCCC-EEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcC
Confidence 5899999999999998777654 677776410 0000 01
Q ss_pred CCCChhhHHhhCHHHHHHHHHHHhcCC---CccceeeEEEEEeee-CCeeEEEEccCCCCccccCcchHhhcC
Q psy14612 72 EPVALSDLESLDNEFHQSLLWIKEHDV---TNEVLDLNFAVTEEI-FGQAKERELKPGGRNIAVTEKNKKTYV 140 (140)
Q Consensus 72 ~~~~l~DL~~~Dp~~~~sL~~ll~~~~---~~e~l~l~F~~~~~~-~G~~~~veL~~~G~~i~VT~~N~~eYV 140 (140)
.+++++||+++||+++++|++|++.+. ++++++++|++.... .|..+++||++||++++||.+||++||
T Consensus 80 ~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv 152 (317)
T PF00632_consen 80 EPLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYV 152 (317)
T ss_dssp ----HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHH
T ss_pred CCCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHH
Confidence 178999999999999999999996532 246899999987543 567788999999999999999999996
No 10
>KOG0170|consensus
Probab=99.60 E-value=6.1e-16 Score=129.03 Aligned_cols=125 Identities=26% Similarity=0.416 Sum_probs=95.7
Q ss_pred ccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEec----------CCee-----EEEeCCCccc-----ccC
Q psy14612 10 KCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSA----------NDTY-----TVQISPMSAF-----VDN 69 (140)
Q Consensus 10 ~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~----------~~~~-----~~~~~p~s~~-----~~~ 69 (140)
+..|.|+|.+|.|.. -||+-|||++++++++.++.|||+.+. +..+ .+.|.|...+ +++
T Consensus 250 ~~vLEIEY~~EvGTG-LGPTLEFYtlVSk~fq~~sLgmWR~~s~s~~~~k~~~~t~~v~~~sgLFp~P~~~ts~~se~~k 328 (621)
T KOG0170|consen 250 KAVLEIEYEEEVGTG-LGPTLEFYTLVSKEFQRASLGMWRCNSVSYRSGKPQENTKDVYITSGLFPRPWPPTSNSSENEK 328 (621)
T ss_pred cceEEEEeccccccC-CCcceeeHHHHHHHHhhccccccccCceeeccCCCCCCcchhhhccccCCCCCCCCCCchhHHH
Confidence 567999999999997 599999999999999999999999741 2111 1223333211 000
Q ss_pred --------------cC--------------------CCCChhhHHhhCHHHHHHHHHHHh--------------------
Q psy14612 70 --------------YH--------------------EPVALSDLESLDNEFHQSLLWIKE-------------------- 95 (140)
Q Consensus 70 --------------~l--------------------~~~~l~DL~~~Dp~~~~sL~~ll~-------------------- 95 (140)
.| +++|..|+..+||+++++|..|..
T Consensus 329 vi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~ 408 (621)
T KOG0170|consen 329 VIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADD 408 (621)
T ss_pred HHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhccccccccc
Confidence 00 289999999999999999988743
Q ss_pred ----cCCCccceeeEEEEEeeeCCeeEEEEccCCCCccccCcchHhhcC
Q psy14612 96 ----HDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140 (140)
Q Consensus 96 ----~~~~~e~l~l~F~~~~~~~G~~~~veL~~~G~~i~VT~~N~~eYV 140 (140)
++..+|+|+|+|++.. ...+||+|||.+++||..|.+|||
T Consensus 409 dltl~g~~iEdL~LdFTLPG-----~p~ieL~p~g~~~~V~~~NleEYi 452 (621)
T KOG0170|consen 409 DLTLNGCSIEDLSLDFTLPG-----FPDIELIPGGANKPVTISNLEEYI 452 (621)
T ss_pred ceeecCcchhhceeeEecCC-----CCCeeeccCCCCCccccccHHHHH
Confidence 0112489999999872 246999999999999999999996
No 11
>KOG0943|consensus
Probab=97.92 E-value=4.5e-06 Score=76.53 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=49.6
Q ss_pred CCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeee-CC------eeEEEEccCCCCccccCcchHhhcC
Q psy14612 73 PVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEI-FG------QAKERELKPGGRNIAVTEKNKKTYV 140 (140)
Q Consensus 73 ~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~-~G------~~~~veL~~~G~~i~VT~~N~~eYV 140 (140)
++.+.|+..+||.+|.+|+.|-...-. .+++-.|++.... -| ...+|+|+|||-+|+||.+|+.|||
T Consensus 2778 ~icW~Df~FfDPVlfenLRaLfkAhps-Sd~DadFS~md~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV 2851 (3015)
T KOG0943|consen 2778 KICWHDFAFFDPVLFENLRALFKAHPS-SDADADFSAMDLAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYV 2851 (3015)
T ss_pred ceehhhhccccHHHHHHHHHHHhcCCc-ccccchhhHHHHhhccchhhhcCceeEEEecCCceeeecchhHHHHH
Confidence 899999999999999999998643221 2333444432111 11 2467999999999999999999997
No 12
>KOG0943|consensus
Probab=65.87 E-value=7.3 Score=37.72 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.5
Q ss_pred ccceEEEEecccccCCCCchHHHHHHHHHHhcC
Q psy14612 10 KCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFN 42 (140)
Q Consensus 10 ~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~ 42 (140)
-.+++|+|++|.|-. .||.|-||+.+++....
T Consensus 2485 g~RlkVhFiDEPGEG-sGVaRSFYTAfAeaclm 2516 (3015)
T KOG0943|consen 2485 GHRLKVHFIDEPGEG-SGVARSFYTAFAEACLM 2516 (3015)
T ss_pred ceeEEEEEecCCCCC-cchHHHHHHHHHHHHhh
Confidence 347999999999986 69999999999887654
No 13
>PF01281 Ribosomal_L9_N: Ribosomal protein L9, N-terminal domain; InterPro: IPR020070 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=43.68 E-value=12 Score=21.92 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.7
Q ss_pred EccCCCCccccCcchHhhc
Q psy14612 121 ELKPGGRNIAVTEKNKKTY 139 (140)
Q Consensus 121 eL~~~G~~i~VT~~N~~eY 139 (140)
.|+|.|..+..|.+|+++|
T Consensus 29 ~L~p~~~A~~at~~~~~~~ 47 (48)
T PF01281_consen 29 FLIPQGLAVYATPENLKQL 47 (48)
T ss_dssp TTTTTTSEEECSHHHHHHH
T ss_pred hccCCCceeeCCHHHHHhc
Confidence 4889999999999999875
No 14
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=42.43 E-value=63 Score=23.32 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=58.5
Q ss_pred hcccceEEEEecccccCCCCch---HHHHHHHHHHhcCCCCCceEEecCCee-EEEeCCCcccccCcCCCCChhhHHhhC
Q psy14612 8 LAKCKLYAQFDSEDGLDYGGPS---REFFFLLSRQLFNPYYGLFEYSANDTY-TVQISPMSAFVDNYHEPVALSDLESLD 83 (140)
Q Consensus 8 l~~~~l~V~F~gE~G~D~GG~~---rE~~~~l~~el~~p~~~lF~~~~~~~~-~~~~~p~s~~~~~~l~~~~l~DL~~~D 83 (140)
|.||.--|+|..+.-||.-|-+ |-||+.+.--.++.+.-......++.- .|-|--.+.+..++.--+|=-||.+ |
T Consensus 27 lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLae-d 105 (148)
T COG4917 27 LYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAE-D 105 (148)
T ss_pred hhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEecccccc-h
Confidence 3477888999999999988865 448888888888876554444333221 1111001112223444567788887 7
Q ss_pred HHHHHHHHHHHhcCCC
Q psy14612 84 NEFHQSLLWIKEHDVT 99 (140)
Q Consensus 84 p~~~~sL~~ll~~~~~ 99 (140)
.+....=+||.+.+..
T Consensus 106 ~dI~~~~~~L~eaGa~ 121 (148)
T COG4917 106 ADISLVKRWLREAGAE 121 (148)
T ss_pred HhHHHHHHHHHHcCCc
Confidence 7888888899887643
No 15
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=31.40 E-value=31 Score=22.96 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=15.4
Q ss_pred CCChhhHHhhCHHHHHHHH
Q psy14612 73 PVALSDLESLDNEFHQSLL 91 (140)
Q Consensus 73 ~~~l~DL~~~Dp~~~~sL~ 91 (140)
.++++||...||+++..|.
T Consensus 34 ~Vd~~dL~~f~~~L~~~l~ 52 (121)
T PF14551_consen 34 YVDLDDLREFDPDLAEALI 52 (121)
T ss_dssp EEEHHHHHHH-HHHHHHHH
T ss_pred EEEHHHHHHHHHHHHHHHH
Confidence 7799999999998887754
No 16
>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if, and only if, the species is capable of endospore formation. In Bacillus subtilis SpoIIID is a DNA binding protein that is involved in gene repression as well as activation [].; PDB: 2L0K_A.
Probab=30.06 E-value=60 Score=21.26 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=16.8
Q ss_pred hhHHhhCHHHHHHHHHHHhc
Q psy14612 77 SDLESLDNEFHQSLLWIKEH 96 (140)
Q Consensus 77 ~DL~~~Dp~~~~sL~~ll~~ 96 (140)
+-|..+||++|...+.+|+.
T Consensus 42 eRL~~in~~La~eV~~vL~~ 61 (82)
T PF12116_consen 42 ERLPKINPELAREVRKVLDY 61 (82)
T ss_dssp THHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 56899999999999999874
No 17
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.94 E-value=48 Score=22.25 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=12.8
Q ss_pred EEEEccCCCCccccCcchHhhc
Q psy14612 118 KERELKPGGRNIAVTEKNKKTY 139 (140)
Q Consensus 118 ~~veL~~~G~~i~VT~~N~~eY 139 (140)
+.|--.||++.|.+..+|++-|
T Consensus 34 ~ivas~pgis~ieik~E~kkL~ 55 (96)
T COG4004 34 RIVASSPGISRIEIKPENKKLL 55 (96)
T ss_pred EEEEecCCceEEEEecccceEE
Confidence 3444556666666666666544
Done!