Query psy14612
Match_columns 140
No_of_seqs 120 out of 1102
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 16:12:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvd_A SMAD ubiquitination reg 100.0 3.6E-39 1.2E-43 263.4 9.7 138 1-140 43-214 (380)
2 3olm_A E3 ubiquitin-protein li 100.0 5.7E-39 1.9E-43 265.6 8.4 137 2-140 94-264 (429)
3 3h1d_A E3 ubiquitin-protein li 100.0 9.8E-39 3.3E-43 262.5 6.6 138 2-140 67-238 (405)
4 1nd7_A WW domain-containing pr 100.0 2E-38 6.9E-43 258.5 7.8 139 1-140 42-214 (374)
5 2oni_A E3 ubiquitin-protein li 100.0 1.2E-37 4.3E-42 255.1 7.7 135 4-140 64-233 (392)
6 1c4z_A E6AP, ubiquitin-protein 100.0 5.8E-37 2E-41 248.7 8.1 136 3-140 29-197 (358)
7 2hba_A BL17, 50S ribosomal pro 42.0 8.2 0.00028 22.2 0.8 18 122-139 30-47 (52)
8 2wuj_A Septum site-determining 38.0 7.5 0.00026 22.6 0.2 36 1-40 1-36 (57)
9 2yh6_A Lipoprotein 34, BAMC; l 20.6 86 0.003 20.6 3.1 36 103-139 57-97 (112)
10 3fyr_A Sporulation inhibitor S 19.0 63 0.0021 18.2 1.8 20 26-45 21-40 (48)
No 1
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-39 Score=263.38 Aligned_cols=138 Identities=48% Similarity=0.859 Sum_probs=125.9
Q ss_pred CCCChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcC---------
Q psy14612 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH--------- 71 (140)
Q Consensus 1 ~~~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l--------- 71 (140)
|.+++++| |++|+|+|.||+|+|+|||+||||+++++|+++|++|||++++++.++++|||.+..+++|+
T Consensus 43 ~~~~~~~l-k~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~l 121 (380)
T 1zvd_A 43 MKMRPKDL-WKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRI 121 (380)
T ss_dssp HTSCGGGG-GSEEEEEETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGGGSTTHHHHHHHHHHH
T ss_pred HccCHHHh-cCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCCeeccCCCCeeeccCchhhcChHHHHHHHHhHHH
Confidence 35678899 58999999999999999999999999999999999999999988778889999886544432
Q ss_pred -------------------------CCCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeeeCCeeEEEEccCCC
Q psy14612 72 -------------------------EPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGG 126 (140)
Q Consensus 72 -------------------------~~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~~G~~~~veL~~~G 126 (140)
.+++++||+++||++|+||++|++++++ +.+++||+++.+.+|...++||+|||
T Consensus 122 ~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~-~~l~ltF~~~~~~~g~~~~veL~p~G 200 (380)
T 1zvd_A 122 MGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDIT-GVLDHTFCVEHNAYGEIIQHELKPNG 200 (380)
T ss_dssp HHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHSCCT-TTSCCCSEEEEEETTEEEEEESSTTC
T ss_pred HHHHHhCCceeCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhCCcc-ccccceeEEeeecCCcEeEEecCCCC
Confidence 1899999999999999999999999887 67999999999999999999999999
Q ss_pred CccccCcchHhhcC
Q psy14612 127 RNIAVTEKNKKTYV 140 (140)
Q Consensus 127 ~~i~VT~~N~~eYV 140 (140)
++|+||++||++||
T Consensus 201 ~~i~VT~~N~~eYv 214 (380)
T 1zvd_A 201 KSIPVNEENKKEYV 214 (380)
T ss_dssp CCCCCTTTTHHHHH
T ss_pred CCCccccccHHHHH
Confidence 99999999999997
No 2
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-39 Score=265.63 Aligned_cols=137 Identities=52% Similarity=0.874 Sum_probs=117.2
Q ss_pred CCChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcC----------
Q psy14612 2 LASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH---------- 71 (140)
Q Consensus 2 ~~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l---------- 71 (140)
.+++.+| |++|+|+|.||+|+|+|||+||||+++++|+|+|++|||++++++++++++||.+...+.|+
T Consensus 94 ~~~~~~l-k~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~li 172 (429)
T 3olm_A 94 RQTPEDL-KKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVV 172 (429)
T ss_dssp HSCHHHH-TSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHH
T ss_pred hcChHhc-CcceEEEECCCCccCCChhHHHHHHHHHHHHcCccCCCceeeCCCCeeEeeCCcccCCHHHHHHHHHHHHHH
Confidence 3567889 68999999999999999999999999999999999999999887777889999886544433
Q ss_pred ------------------------CCCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeeeCCeeEEEEccCCCC
Q psy14612 72 ------------------------EPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGR 127 (140)
Q Consensus 72 ------------------------~~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~~G~~~~veL~~~G~ 127 (140)
.+++++||+++||++|++|++|++++++ +.+++||+++.+.+|...++||+|||+
T Consensus 173 g~Al~~~~~ld~~f~~~f~k~Llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~-~~l~l~F~~~~~~~g~~~~veL~p~G~ 251 (429)
T 3olm_A 173 GLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSID-GVLDLTFSADDERFGEVVTVDLKPDGR 251 (429)
T ss_dssp HHHHHTTCCCCCCBCHHHHHHHTTCCCCHHHHHHHCHHHHHHHHHHTTSCCT-TTCCCBSEEEEEETTEEEEEESSTTGG
T ss_pred HHHHhcCCccCCCcCHHHHHhhcCCCCCHHHHHHHhHHHHHHHHHHHhCCHH-HhhcCceEEEeccCCceeeEeccCCCc
Confidence 1899999999999999999999999887 779999999999999999999999999
Q ss_pred ccccCcchHhhcC
Q psy14612 128 NIAVTEKNKKTYV 140 (140)
Q Consensus 128 ~i~VT~~N~~eYV 140 (140)
+|+||++||++||
T Consensus 252 ~i~VT~~Nk~eYV 264 (429)
T 3olm_A 252 NIEVTDGNKKEYV 264 (429)
T ss_dssp GSBCCTTTHHHHH
T ss_pred ccccCchhHHHHH
Confidence 9999999999997
No 3
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=9.8e-39 Score=262.46 Aligned_cols=138 Identities=43% Similarity=0.677 Sum_probs=119.7
Q ss_pred CCChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcCC---------
Q psy14612 2 LASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE--------- 72 (140)
Q Consensus 2 ~~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~--------- 72 (140)
..++.+| |++|+|+|.||+|+|+||++||||+++++|+|+|++|||+++++++++++|||.+..+++|+.
T Consensus 67 ~~~~~~l-k~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flGrli 145 (405)
T 3h1d_A 67 RKSPEEM-KNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIV 145 (405)
T ss_dssp TSCTTGG-GSEEEEEETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC-----CHHHHHHHHHHHH
T ss_pred ccCHHHh-hcceEEEECCCCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccccChhHHHHHHHHhHHH
Confidence 4678899 689999999999999999999999999999999999999999887778889998754444431
Q ss_pred -------------------------CCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeeeCCeeEEEEccCCCC
Q psy14612 73 -------------------------PVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGR 127 (140)
Q Consensus 73 -------------------------~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~~G~~~~veL~~~G~ 127 (140)
+++++||+++||++|+||++|++++++.-.+++||+++.+.+|...++||+|||+
T Consensus 146 G~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~ 225 (405)
T 3h1d_A 146 AKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGA 225 (405)
T ss_dssp HHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSS
T ss_pred HHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCC
Confidence 8999999999999999999999998752247899998777788778899999999
Q ss_pred ccccCcchHhhcC
Q psy14612 128 NIAVTEKNKKTYV 140 (140)
Q Consensus 128 ~i~VT~~N~~eYV 140 (140)
+|+||++||+|||
T Consensus 226 ~i~VT~~Nk~eYV 238 (405)
T 3h1d_A 226 NILVTEENKKEYV 238 (405)
T ss_dssp EEECCTTTHHHHH
T ss_pred CCccchHhHHHHH
Confidence 9999999999997
No 4
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=2e-38 Score=258.46 Aligned_cols=139 Identities=44% Similarity=0.821 Sum_probs=123.9
Q ss_pred CCCChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCcccccCcC---------
Q psy14612 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH--------- 71 (140)
Q Consensus 1 ~~~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l--------- 71 (140)
|.+++.+| |++|+|+|.||+|+|+|||+||||+++++|+++|++|||++++++.+++++||.+...+.|+
T Consensus 42 ~~~~~~~l-~~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~~f~flG~l 120 (374)
T 1nd7_A 42 MALKPYDL-RRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRF 120 (374)
T ss_dssp HTSCGGGG-GSEEEEEETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHH
T ss_pred HhcCHHhc-cceEEEEECCCCCcCCCccHHHHHHHHHHHHcCCccccccccCCCCceeccCCcccCCHHHHHHHHHHHHH
Confidence 35677888 68999999999999999999999999999999999999999887777889999875444332
Q ss_pred -------------------------CCCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeeeCCeeEEEEccCCC
Q psy14612 72 -------------------------EPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGG 126 (140)
Q Consensus 72 -------------------------~~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~~G~~~~veL~~~G 126 (140)
.+++++||+++||++|+||++|++++++.-++++||+++.+.+|...++||+|||
T Consensus 121 ig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G 200 (374)
T 1nd7_A 121 IAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGG 200 (374)
T ss_dssp HHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTG
T ss_pred HHHHHhcCCeeCCcCCHHHHHHHhCCCCCHHHHHHhhHHHHHhhhhhccCChhhhhcceeEEEeeccCCceeeEecCCCC
Confidence 1899999999999999999999999886224899999998889988899999999
Q ss_pred CccccCcchHhhcC
Q psy14612 127 RNIAVTEKNKKTYV 140 (140)
Q Consensus 127 ~~i~VT~~N~~eYV 140 (140)
++|+||++||++||
T Consensus 201 ~~i~VT~~N~~eYv 214 (374)
T 1nd7_A 201 SNILVTEENKDEYI 214 (374)
T ss_dssp GGCBCCTTTHHHHH
T ss_pred cCceeccccHHHHH
Confidence 99999999999997
No 5
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=1.2e-37 Score=255.12 Aligned_cols=135 Identities=51% Similarity=0.937 Sum_probs=119.0
Q ss_pred ChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCccc-ccCcC-----------
Q psy14612 4 SKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAF-VDNYH----------- 71 (140)
Q Consensus 4 ~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~-~~~~l----------- 71 (140)
++.+++|++|.|+|.||+|+|+|||+||||+++++|+|+|++|||++++++.++++|||.+.. .++|+
T Consensus 64 ~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig 143 (392)
T 2oni_A 64 KRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAG 143 (392)
T ss_dssp SCGGGGGSEEEEEEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHH
T ss_pred CcHHhhCccEEEEECCCccccCCccHHHHHHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhh
Confidence 334444789999999999999999999999999999999999999998877778899998642 22222
Q ss_pred -----------------------CCCChhhHHhhCHHHHHHHHHHHhcCCCccceeeEEEEEeeeCCeeEEEEccCCCCc
Q psy14612 72 -----------------------EPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRN 128 (140)
Q Consensus 72 -----------------------~~~~l~DL~~~Dp~~~~sL~~ll~~~~~~e~l~l~F~~~~~~~G~~~~veL~~~G~~ 128 (140)
.+++++||+++||++|+||++|+++++ ++++|||+++.+.+|...++||+|||++
T Consensus 144 ~Al~~~~~ld~~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~d~--~~l~L~F~v~~~~~G~~~~veL~p~G~~ 221 (392)
T 2oni_A 144 LAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDP--TELDLMFCIDEENFGQTYQVDLKPNGSE 221 (392)
T ss_dssp HHHHHTCCCSSCBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHSCC--GGGCCBSEEEEEETTEEEEEESSTTGGG
T ss_pred hhhcCCcccCccchHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHhcCCh--hHceeeEEEeeecCCceeEEecCCCCcc
Confidence 189999999999999999999999876 5799999999999999999999999999
Q ss_pred cccCcchHhhcC
Q psy14612 129 IAVTEKNKKTYV 140 (140)
Q Consensus 129 i~VT~~N~~eYV 140 (140)
|+||++||+|||
T Consensus 222 i~VT~~N~~eYv 233 (392)
T 2oni_A 222 IMVTNENKREYI 233 (392)
T ss_dssp CBCCTTTHHHHH
T ss_pred CccchhhHHHHH
Confidence 999999999997
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=5.8e-37 Score=248.66 Aligned_cols=136 Identities=30% Similarity=0.520 Sum_probs=118.0
Q ss_pred CChhhhcccceEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEEecCCeeEEEeCCCccccc--------------
Q psy14612 3 ASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVD-------------- 68 (140)
Q Consensus 3 ~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~-------------- 68 (140)
.++++| |++|+|+|.||+|+|+|||+||||+++++|+++|++|||+++++++ .+|+||.+....
T Consensus 29 ~~~~~l-k~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~-~~~~np~s~~~~~~f~flG~lig~Al 106 (358)
T 1c4z_A 29 ENPADL-KKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTK-LFWFNPSSFETEGQFTLIGIVLGLAI 106 (358)
T ss_dssp SCGGGG-GSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTT-EEEECTTCCSCHHHHHHHHHHHHHHH
T ss_pred cCHHHh-cCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCC-eEeeCCccccchHHHHhHHHHHHHHH
Confidence 357888 6899999999999999999999999999999999999999987654 688999863211
Q ss_pred -------CcC----------CCCChhhHHhhCHHHHHHHHHHHhcCCCc-cceeeEEEEEe-eeCCeeEEEEccCCCCcc
Q psy14612 69 -------NYH----------EPVALSDLESLDNEFHQSLLWIKEHDVTN-EVLDLNFAVTE-EIFGQAKERELKPGGRNI 129 (140)
Q Consensus 69 -------~~l----------~~~~l~DL~~~Dp~~~~sL~~ll~~~~~~-e~l~l~F~~~~-~~~G~~~~veL~~~G~~i 129 (140)
-++ .+++++||+++||++|+||++|++++.++ +.+++||+++. +.+|...++||+|||++|
T Consensus 107 ~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~~~~l~ltF~~~~~~~~G~~~~~eL~p~G~~i 186 (358)
T 1c4z_A 107 YNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKI 186 (358)
T ss_dssp HTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHHHHTCCBSEEEECCTTTCCEEEESSTTTTTS
T ss_pred HCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhccceEEEeccccCCCeeeeecCCCCccc
Confidence 111 18999999999999999999999976443 56999999985 678988999999999999
Q ss_pred ccCcchHhhcC
Q psy14612 130 AVTEKNKKTYV 140 (140)
Q Consensus 130 ~VT~~N~~eYV 140 (140)
+||++||+|||
T Consensus 187 ~VT~~N~~eYv 197 (358)
T 1c4z_A 187 PITNENRKEFV 197 (358)
T ss_dssp BCCTTTHHHHH
T ss_pred ccccccHHHHH
Confidence 99999999996
No 7
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=42.04 E-value=8.2 Score=22.19 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=16.1
Q ss_pred ccCCCCccccCcchHhhc
Q psy14612 122 LKPGGRNIAVTEKNKKTY 139 (140)
Q Consensus 122 L~~~G~~i~VT~~N~~eY 139 (140)
|+|.|..++.|.+|..++
T Consensus 30 LiP~g~A~~AT~~n~~~~ 47 (52)
T 2hba_A 30 LFKQGLAIEATPANLKAL 47 (52)
T ss_dssp TTTTTSEEECCHHHHHHH
T ss_pred hccCCceeeCCHHHHHHH
Confidence 889999999999998865
No 8
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=38.04 E-value=7.5 Score=22.59 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCChhhhcccceEEEEecccccCCCCchHHHHHHHHHHh
Q psy14612 1 MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQL 40 (140)
Q Consensus 1 ~~~~~~~l~~~~l~V~F~gE~G~D~GG~~rE~~~~l~~el 40 (140)
|.++|.|.+.+.++..|.| -|. .=-.+|+..+.+++
T Consensus 1 M~lTp~dI~~k~F~~~~rG---Y~~-~EVD~FLd~v~~~~ 36 (57)
T 2wuj_A 1 MPLTPNDIHNKTFTKSFRG---YDE-DEVNEFLAQVRKDY 36 (57)
T ss_dssp --CCHHHHTTCCCCEETTE---EEH-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHhhCcCCCCCCC---cCH-HHHHHHHHHHHHHH
Confidence 8899999988888877654 221 11235777777654
No 9
>2yh6_A Lipoprotein 34, BAMC; lipid binding protein; 1.55A {Escherichia coli}
Probab=20.62 E-value=86 Score=20.56 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=25.4
Q ss_pred eeeEEEEEeeeCCe-----eEEEEccCCCCccccCcchHhhc
Q psy14612 103 LDLNFAVTEEIFGQ-----AKERELKPGGRNIAVTEKNKKTY 139 (140)
Q Consensus 103 l~l~F~~~~~~~G~-----~~~veL~~~G~~i~VT~~N~~eY 139 (140)
+...|.++....|. ...+++..+|+. .+|..+++-|
T Consensus 57 ~~~RY~I~~~~~g~~~~l~V~lld~~q~g~~-~~s~~~kqRY 97 (112)
T 2yh6_A 57 YRGRYQISVKPQGYQQAVTVKLLNLEQAGKP-VADAASMQRY 97 (112)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEETTEE-ECCHHHHHHH
T ss_pred cceEEEEEEcccCCeEEEEEEEhhhhcCCCc-cCCHHHHHHH
Confidence 55677776544342 355788888888 8999999877
No 10
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=18.98 E-value=63 Score=18.15 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=16.2
Q ss_pred CCchHHHHHHHHHHhcCCCC
Q psy14612 26 GGPSREFFFLLSRQLFNPYY 45 (140)
Q Consensus 26 GG~~rE~~~~l~~el~~p~~ 45 (140)
-|+-+||+.++-+||...+.
T Consensus 21 l~L~~dFI~LL~~Ei~RR~L 40 (48)
T 3fyr_A 21 MNLNRDFIELIENEIKRRSL 40 (48)
T ss_dssp TTCCHHHHHHHHHHHHHHHC
T ss_pred hCCCHHHHHHHHHHHHHcCC
Confidence 37889999999999976443
Done!