RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14612
         (140 letters)



>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
           subclass of Ubiquitin-protein ligase (E3). It binds
           specific ubiquitin-conjugating enzymes (E2), accepts
           ubiquitin from E2, transfers ubiquitin to substrate
           lysine side chains, and transfers additional ubiquitin
           molecules to the end of growing ubiquitin chains.
          Length = 352

 Score =  140 bits (356), Expect = 1e-41
 Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 36/175 (20%)

Query: 1   MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQI 60
              S  DL K  L  +F  E+G+D GG +REFF L+S++LFNP YGLF Y+ +D+  +  
Sbjct: 19  SKVSSSDLKK-VLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYP 77

Query: 61  SPMSAFVDNY----------------------------------HEPVALSDLESLDNEF 86
           +P S   +++                                   +P++L DLE LD E 
Sbjct: 78  NPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPEL 137

Query: 87  HQSLLWIKEHDVTNEVLDLNFAVTEEI-FGQAKERELKPGGRNIAVTEKNKKTYV 140
           ++SL  + ++D   + L+L F +  +  FG A   ELKPGGR+I VT +NK+ YV
Sbjct: 138 YKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYV 192


>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
           with.  E3 ubiquitin-protein ligases. Can bind to E2
           enzymes.
          Length = 328

 Score =  139 bits (352), Expect = 3e-41
 Identities = 76/170 (44%), Positives = 94/170 (55%), Gaps = 37/170 (21%)

Query: 7   DLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAF 66
           DL K  L  +F+ E+GLD GG +REFFFLLS++LFNP YGLF YS ND Y +  +P S F
Sbjct: 1   DLKKRVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPND-YLLYPNPRSGF 59

Query: 67  VDNYH-----------------------------------EPVALSDLESLDNEFHQSLL 91
            +  H                                   +PV L DLESLD E ++SL 
Sbjct: 60  ANEEHLSYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLK 119

Query: 92  WIKEHDVTNEVLDLNFA-VTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
           W+  ++ T+E LDL F+ V    FGQ K  ELKPGG NI VTE+NKK YV
Sbjct: 120 WLLLNNDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYV 169


>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 872

 Score =  129 bits (327), Expect = 6e-36
 Identities = 66/169 (39%), Positives = 93/169 (55%), Gaps = 34/169 (20%)

Query: 6   KDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMS- 64
            D  K  L  +F  E+G+D GG +RE+ FLLS+++FNP YGLFEY   D YT+ I+P+S 
Sbjct: 537 GDDLKKTLEIEFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYTLPINPLSS 596

Query: 65  ----------------------------AFVD-----NYHEPVALSDLESLDNEFHQSLL 91
                                        F          +PV+L DLESLD E ++SL+
Sbjct: 597 INPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLV 656

Query: 92  WIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
           W+  +D+   +LDL F V ++ FG+++  EL P GRNI+VT +NKK YV
Sbjct: 657 WLLNNDIDETILDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYV 705


>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name
           HECT comes from Homologous to the E6-AP Carboxyl
           Terminus.
          Length = 298

 Score = 83.1 bits (206), Expect = 4e-20
 Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 37/140 (26%)

Query: 35  LLSRQLFNPYYGLFEYSANDTYTVQISPMS-------------------AFVDNYH---- 71
           LLS++LFNP YGLF Y   ++  +  +P S                   A  +       
Sbjct: 2   LLSKELFNPDYGLFFYVTPNSGLLWPNPGSPESSADEELFKFLGALIGKAIYNGILLDLP 61

Query: 72  -----------EPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKER 120
                      +P+ L DLE +D E ++SL  + E D   E L L F V+ E        
Sbjct: 62  FPPAFWKKLLGKPITLEDLEEVDPELYRSLKSLLELDGDEEELCLTFTVSGEGE---GTI 118

Query: 121 ELKPGGRNIAVTEKNKKTYV 140
           EL P G NI VT +NK+ YV
Sbjct: 119 ELIPNGSNIPVTNENKEEYV 138


>gnl|CDD|180883 PRK07206, PRK07206, hypothetical protein; Provisional.
          Length = 416

 Score = 30.8 bits (70), Expect = 0.19
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 60  ISPMSAFVDNYHEPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDL 105
           ISP +    N      +  L S    F +S +++KE D   + +DL
Sbjct: 339 ISPAAGVFSNVEFLEEIQKLPS----FKKSHIYVKEGDYVPQTVDL 380


>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain.  This domain is
           found in ribosomal RNA small subunit methyltransferase C
           as well as other methyltransferases .
          Length = 170

 Score = 28.3 bits (64), Expect = 1.2
 Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)

Query: 103 LDLNFAVTEEIFGQAKERELKPGGR 127
              ++ V +     A    LKPGG 
Sbjct: 112 KATDYDVAQRFIAGAARH-LKPGGE 135


>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.
          Length = 507

 Score = 27.5 bits (62), Expect = 3.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 103 LDLNFAVTEEIFGQ 116
           LD+N AV E ++ Q
Sbjct: 241 LDVNHAVMESVYRQ 254


>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
          Length = 464

 Score = 26.5 bits (59), Expect = 4.9
 Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 50  YSANDTYTVQISPMSAFVDNYHEPVA 75
           +SAN+ +  +++ M A+   Y  P+ 
Sbjct: 255 FSANE-FLTRVNLMKAYKPEYDTPIK 279


>gnl|CDD|227220 COG4883, COG4883, Uncharacterized protein conserved in archaea
           [Function unknown].
          Length = 500

 Score = 26.5 bits (58), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 66  FVDNYHEPVALSDLESLDNEFHQSL 90
           FV++Y  P  L  L   D  FH+S+
Sbjct: 86  FVEHYQTPPILEILYEEDPAFHKSV 110


>gnl|CDD|222973 PHA03081, PHA03081, putative metalloprotease; Provisional.
          Length = 595

 Score = 26.5 bits (59), Expect = 6.6
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 16/71 (22%)

Query: 56  YTV--QISP-------MSAFVDNYHEPVALSDLESLDNEFHQSLLWIKEHD---VTNEVL 103
           YTV  ++ P       +    + YH    L D E++ N+ + ++ ++ E D       + 
Sbjct: 216 YTVMVRVDPTLDNILAILCLYETYH----LIDYETVGNQLYVTISFVDEDDYESFLRGIK 271

Query: 104 DLNFAVTEEIF 114
            L+F     I 
Sbjct: 272 ILDFEAYPRIN 282


>gnl|CDD|204356 pfam09959, DUF2193, Uncharacterized protein conserved in archaea
           (DUF2193).  This domain, found in various hypothetical
           archaeal proteins, has no known function.
          Length = 499

 Score = 26.3 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 66  FVDNYHEPVALSDLESLDNEFHQSL 90
           FV++Y  PV L  L   D  F +S+
Sbjct: 85  FVEHYQTPVILEILYEEDPAFAKSV 109


>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.
          Length = 474

 Score = 25.9 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 105 LNFAVTEEIFGQAKERELKPGGRNIAV 131
                +EEIF  AK  EL PGG N  V
Sbjct: 48  FTTTKSEEIFKAAK--ELMPGGVNSPV 72


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,119,574
Number of extensions: 632738
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 23
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)