RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14612
         (140 letters)



>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score =  116 bits (292), Expect = 7e-33
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 35/174 (20%)

Query: 1   MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQI 60
           M     DL + +LY  F  E+GLDYGG +RE+FFLLS ++ NP Y LFEY+  + Y +QI
Sbjct: 42  MALKPYDL-RRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQI 100

Query: 61  SPMSAFVDNY----------------------------------HEPVALSDLESLDNEF 86
           +P S    ++                                   + + + DLES+D EF
Sbjct: 101 NPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF 160

Query: 87  HQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKTYV 140
           + SL+WI+++++    L++ F+V  EI G+    +LK GG NI VTE+NK  Y+
Sbjct: 161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYI 214


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 93.3 bits (231), Expect = 3e-24
 Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 33/172 (19%)

Query: 1   MLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQI 60
            + +  DL K +LY +F+ E G+D GG S+EFF L+  ++FNP  G+F Y  +       
Sbjct: 25  AMENPADL-KKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFN 83

Query: 61  SPMSAFVDNYH------------------------------EPVALSDLESLDNEFHQSL 90
                    +                               +     DL       +QSL
Sbjct: 84  PSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSL 143

Query: 91  LWIKEHDVTNE-VLDLNFAVTE-EIFGQAKERELKPGGRNIAVTEKNKKTYV 140
             + E++   E  + + F +++ ++FG     +LK  G  I +T +N+K +V
Sbjct: 144 KDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFV 195


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 499,581
Number of extensions: 21184
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 5
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)