BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14614
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 75.1 bits (183), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 17 SRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIA 76
++PV L DLES+D EF+ SL+W+KE+++ L++ F+V +EI G+ K +LKP G NI
Sbjct: 164 NKPVGLKDLESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNIL 223
Query: 77 VTEKNKK 83
VTE+NK+
Sbjct: 224 VTEENKE 230
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 18 RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77
+P+ L D+ES+D+E++ SL WI E+D T LDL F + EE+FGQ + ELK GG I V
Sbjct: 153 KPITLHDMESVDSEYYNSLRWILENDPTE--LDLRFIIDEELFGQTHQHELKNGGSEIVV 210
Query: 78 TEKNKK 83
T KNKK
Sbjct: 211 TNKNKK 216
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 12 YSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPG 71
Y S+ + + DLES+D EF+ SL+WI+++++ L++ F+V EI G+ +LK G
Sbjct: 140 YKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLG 199
Query: 72 GRNIAVTEKNK 82
G NI VTE+NK
Sbjct: 200 GSNILVTEENK 210
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 12 YSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPG 71
Y + + L+D+ES+D+E++ SL WI E+D T LDL F + EE FGQ + +LKP
Sbjct: 146 YKMMLGKQITLNDMESVDSEYYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPN 203
Query: 72 GRNIAVTEKNKK 83
G I VT +NK+
Sbjct: 204 GSEIMVTNENKR 215
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 12 YSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPG 71
Y + + L+D+ES+D+E++ SL WI E+D T LDL F + EE FGQ + +LKP
Sbjct: 146 YKMMLGKQITLNDMESVDSEYYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPN 203
Query: 72 GRNIAVTEKNKK 83
G I VT +NK+
Sbjct: 204 GSEIMVTNENKR 215
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 12 YSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPG 71
Y + + L+D ES+D+E++ SL WI E+D T LDL F + EE FGQ + +LKP
Sbjct: 161 YKXXLGKQITLNDXESVDSEYYNSLKWILENDPTE--LDLXFCIDEENFGQTYQVDLKPN 218
Query: 72 GRNIAVTEKNKK 83
G I VT +NK+
Sbjct: 219 GSEIXVTNENKR 230
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFG 61
Y G + Y + + L D E +D + H SL+WI E+D+T VLD F V +G
Sbjct: 131 YIDGGFTLPFYKQLLGKSITLDDXELVDPDLHNSLVWILENDITG-VLDHTFCVEHNAYG 189
Query: 62 QAKERELKPGGRNIAVTEKNKK 83
+ + ELKP G++I V E+NKK
Sbjct: 190 EIIQHELKPNGKSIPVNEENKK 211
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 17 SRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIA 76
+ V +D+ES D F+Q L+++ E+DV+ DL F+ + FG A+ R+LKP G NI
Sbjct: 169 GKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANIL 228
Query: 77 VTEKNKK 83
VTE+NKK
Sbjct: 229 VTEENKK 235
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 12 YSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPG 71
Y + V L D+E +D E + SL W+ E+ + + VLDL F+ +E FG+ +LKP
Sbjct: 191 YKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSI-DGVLDLTFSADDERFGEVVTVDLKPD 249
Query: 72 GRNIAVTEKNKK 83
GRNI VT+ NKK
Sbjct: 250 GRNIEVTDGNKK 261
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 17 SRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIA 76
+ V +D+ES D F+Q L+++ E+DV+ DL F+ + FG + R+LKP G NI
Sbjct: 152 GKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANIL 211
Query: 77 VTEKNKK 83
VTE+NKK
Sbjct: 212 VTEENKK 218
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 27 SLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGG 72
SLD +LW+ E+++T V I GQ ER+LK G
Sbjct: 257 SLDTSQMNRILWVDENNLTAH-------VEAGITGQELERQLKESG 295
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 27 SLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGG 72
SLD +LW+ E+++T V I GQ ER+LK G
Sbjct: 257 SLDTSQMNRILWVDENNLTAH-------VEAGITGQELERQLKESG 295
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 27 SLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGG 72
SLD +LW+ E+++T V I GQ ER+LK G
Sbjct: 257 SLDTSQMNRILWVDENNLTAH-------VEAGITGQELERQLKESG 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,656,883
Number of Sequences: 62578
Number of extensions: 86371
Number of successful extensions: 216
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 15
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)