Query psy14614
Match_columns 92
No_of_seqs 175 out of 1019
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 16:14:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5021 HUL4 Ubiquitin-protein 99.9 3.3E-27 7.2E-32 192.3 8.1 90 1-90 620-709 (872)
2 KOG0941|consensus 99.9 5E-25 1.1E-29 177.1 6.4 90 1-91 603-695 (850)
3 KOG0942|consensus 99.9 4.9E-24 1.1E-28 172.6 5.9 91 1-91 750-843 (1001)
4 cd00078 HECTc HECT domain; C-t 99.9 3.3E-23 7.2E-28 154.8 8.4 89 2-90 107-196 (352)
5 smart00119 HECTc Domain Homolo 99.9 1.4E-22 3.1E-27 151.2 8.5 88 2-90 89-178 (336)
6 KOG0939|consensus 99.9 6.7E-23 1.5E-27 162.6 4.0 87 2-89 470-556 (720)
7 KOG4427|consensus 99.8 5.5E-20 1.2E-24 147.8 5.0 88 1-88 821-910 (1096)
8 PF00632 HECT: HECT-domain (ub 99.8 3.5E-19 7.5E-24 130.6 5.7 89 2-90 63-156 (317)
9 KOG0170|consensus 99.6 1.8E-16 4E-21 123.4 5.4 81 2-89 349-455 (621)
10 KOG0940|consensus 99.6 1.1E-16 2.3E-21 121.0 0.5 84 2-89 122-205 (358)
11 KOG0943|consensus 99.3 9.2E-13 2E-17 110.6 3.4 86 4-90 2763-2855(3015)
12 PRK13704 plasmid SOS inhibitio 65.4 3.1 6.7E-05 30.4 0.9 37 5-41 38-82 (240)
13 PF06952 PsiA: PsiA protein; 50.1 6.8 0.00015 28.6 0.5 30 4-33 37-67 (238)
14 PF14551 MCM_N: MCM N-terminal 42.2 14 0.00031 22.8 1.0 19 20-38 35-53 (121)
15 PF01281 Ribosomal_L9_N: Ribos 38.3 24 0.00052 19.4 1.5 19 67-85 29-47 (48)
16 PF12116 SpoIIID: Stage III sp 34.2 48 0.001 20.4 2.4 20 23-42 42-61 (82)
17 COG3355 Predicted transcriptio 34.0 57 0.0012 21.6 3.0 33 11-43 32-70 (126)
18 PLN02283 alpha-dioxygenase 33.9 30 0.00066 28.6 2.0 34 12-46 492-527 (633)
19 PF04036 DUF372: Domain of unk 31.6 48 0.001 17.5 1.8 23 10-32 13-35 (38)
20 PF01486 K-box: K-box region; 28.9 55 0.0012 20.1 2.2 31 11-41 34-67 (100)
21 COG5475 Uncharacterized small 27.1 42 0.00092 19.3 1.3 17 64-80 9-25 (60)
22 PF13960 DUF4218: Domain of un 26.7 87 0.0019 20.7 2.9 31 10-40 8-38 (128)
23 PF05293 ASFV_L11L: African sw 25.2 42 0.00092 19.9 1.1 22 2-23 43-64 (78)
24 PRK13711 conjugal transfer pro 24.8 61 0.0013 20.4 1.8 12 48-59 65-76 (113)
25 COG4004 Uncharacterized protei 24.4 43 0.00093 21.2 1.0 23 64-86 34-56 (96)
26 PF10512 Borealin: Cell divisi 23.0 76 0.0016 20.6 2.1 28 14-41 79-106 (116)
27 PF04692 PDGF_N: Platelet-deri 22.4 59 0.0013 19.8 1.4 23 4-26 2-25 (78)
28 PF08479 POTRA_2: POTRA domain 22.2 1.1E+02 0.0025 17.4 2.6 23 10-32 21-43 (76)
29 smart00540 LEM in nuclear memb 20.8 66 0.0014 17.3 1.2 16 73-88 21-36 (44)
No 1
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-27 Score=192.30 Aligned_cols=90 Identities=38% Similarity=0.577 Sum_probs=85.5
Q ss_pred CeeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChh
Q psy14614 1 MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEK 80 (92)
Q Consensus 1 ~~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~ 80 (92)
++||++||++|||+|||+|++++||+++||++|+||.||+++++++..+++||++..+.||..++|||||||++|+||++
T Consensus 620 ~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~ 699 (872)
T COG5021 620 RILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDETILDLTFTVEDDSFGESRTVELIPNGRNISVTNE 699 (872)
T ss_pred ceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcceeeeeEEEeecccCceeEEEeccCCccccccch
Confidence 47999999999999999999999999999999999999999999883399999999999999999999999999999999
Q ss_pred hHHHHhcccc
Q psy14614 81 NKKYRTCPHS 90 (92)
Q Consensus 81 N~~eYv~~~~ 90 (92)
||+|||.++.
T Consensus 700 Nk~eYV~~vv 709 (872)
T COG5021 700 NKKEYVKKVV 709 (872)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 2
>KOG0941|consensus
Probab=99.91 E-value=5e-25 Score=177.12 Aligned_cols=90 Identities=26% Similarity=0.342 Sum_probs=84.3
Q ss_pred CeeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhC---CCCccceeeeEEEEeeeCCeeEEEeccCCCCcccc
Q psy14614 1 MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEH---DVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77 (92)
Q Consensus 1 ~~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~---d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~V 77 (92)
+++|+|||+++|||||+++++++||.++.|.+++||+.|+++ |++++ ++++|+++.+.+|...+++|+|||.+|+|
T Consensus 603 ~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~ed~-f~l~F~i~~~~~g~~~~~~L~~nG~~i~v 681 (850)
T KOG0941|consen 603 TILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVEDV-FDLTFQISQDDNGIPRTYELKPNGDEIPV 681 (850)
T ss_pred ceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccchhhh-eeeEEEEEehhcCccceeeccCCCccccc
Confidence 468999999999999999999999999999999999999976 45565 99999999999999999999999999999
Q ss_pred ChhhHHHHhccccC
Q psy14614 78 TEKNKKYRTCPHST 91 (92)
Q Consensus 78 T~~N~~eYv~~~~~ 91 (92)
|++||+|||++|.+
T Consensus 682 t~~Nr~efV~~Yvd 695 (850)
T KOG0941|consen 682 TNENRREFVNLYVD 695 (850)
T ss_pred ccccHHHHHHHHHH
Confidence 99999999999863
No 3
>KOG0942|consensus
Probab=99.89 E-value=4.9e-24 Score=172.60 Aligned_cols=91 Identities=26% Similarity=0.300 Sum_probs=85.0
Q ss_pred CeeecCCCHHHHHhhcCCCC--CcchHhhhcHHHHHHHHHHHhCCCCcc-ceeeeEEEEeeeCCeeEEEeccCCCCcccc
Q psy14614 1 MYRQRGTLVVSYSPHSSRPV--ALSDLESLDNEFHQSLLWIKEHDVTNE-VLDLNFAVTEEIFGQAKERELKPGGRNIAV 77 (92)
Q Consensus 1 ~~id~~f~~~f~K~lLg~~~--tl~DL~~~Dp~l~~sL~~ll~~d~~~~-~l~l~Ft~~~~~~g~~~~veL~p~G~~i~V 77 (92)
|+||+||+.+|.+||+|.+. .++||.++||++|++|.+|++++..++ +|+|+|||..+.+|..+.|||+|||++|+|
T Consensus 750 iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~V 829 (1001)
T KOG0942|consen 750 ILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGERQVVELKPNGSKIRV 829 (1001)
T ss_pred ceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEeccccccceeEEeccCCcccee
Confidence 68999999999999999986 899999999999999999998865433 599999999999999999999999999999
Q ss_pred ChhhHHHHhccccC
Q psy14614 78 TEKNKKYRTCPHST 91 (92)
Q Consensus 78 T~~N~~eYv~~~~~ 91 (92)
|++|+.+||++++|
T Consensus 830 TneNvi~YihLVsn 843 (1001)
T KOG0942|consen 830 TNENVIEYIHLVSN 843 (1001)
T ss_pred echhhhhhhHHhhh
Confidence 99999999999886
No 4
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.89 E-value=3.3e-23 Score=154.80 Aligned_cols=89 Identities=34% Similarity=0.434 Sum_probs=81.3
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeee-CCeeEEEeccCCCCccccChh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEI-FGQAKERELKPGGRNIAVTEK 80 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~-~g~~~~veL~p~G~~i~VT~~ 80 (92)
.++++||++|||+|+|.++|++||+++||++|++|++|++++.+..+++|+|++.... .|...++||+|||++++||.+
T Consensus 107 ~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~l~F~~~~~~~~~~~~~veL~~~G~~~~VT~~ 186 (352)
T cd00078 107 LLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELKPGGRDIPVTNE 186 (352)
T ss_pred eeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhcceeEEEEeecCCCcceEecCCCCCCCcCCHH
Confidence 5799999999999999999999999999999999999999876322399999998877 788899999999999999999
Q ss_pred hHHHHhcccc
Q psy14614 81 NKKYRTCPHS 90 (92)
Q Consensus 81 N~~eYv~~~~ 90 (92)
|+++||+++.
T Consensus 187 N~~eYv~~~~ 196 (352)
T cd00078 187 NKEEYVDLYV 196 (352)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 5
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.88 E-value=1.4e-22 Score=151.20 Aligned_cols=88 Identities=43% Similarity=0.550 Sum_probs=78.9
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHH-HhCCCCccceeeeEEEEee-eCCeeEEEeccCCCCccccCh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWI-KEHDVTNEVLDLNFAVTEE-IFGQAKERELKPGGRNIAVTE 79 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~l-l~~d~~~~~l~l~Ft~~~~-~~g~~~~veL~p~G~~i~VT~ 79 (92)
.++++||++|||+|+|.+++++||+++||++|++|++| ++++..+. ++++|++... .+|...++||+|||++++||.
T Consensus 89 ~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~~~-~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~ 167 (336)
T smart00119 89 LLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTSEE-LDLTFSIVLTSEFGQVKVVELKPGGSNIPVTE 167 (336)
T ss_pred eeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCccc-ccceEEEEeeecCCCcceEecCCCCCCCcCCH
Confidence 58999999999999999999999999999999999999 67766554 9999996543 478888999999999999999
Q ss_pred hhHHHHhcccc
Q psy14614 80 KNKKYRTCPHS 90 (92)
Q Consensus 80 ~N~~eYv~~~~ 90 (92)
+||++||+++.
T Consensus 168 ~N~~eYv~~~~ 178 (336)
T smart00119 168 ENKKEYVHLVI 178 (336)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 6
>KOG0939|consensus
Probab=99.87 E-value=6.7e-23 Score=162.56 Aligned_cols=87 Identities=34% Similarity=0.484 Sum_probs=84.0
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N 81 (92)
++|++|+++|||+++|.+++++|+++.||+.|+++.||+++|+++. +++||+...+.||..+++||+|||++|.||++|
T Consensus 470 l~~c~ftrsfyk~ilG~~v~~~d~es~DP~y~k~l~~il~ndis~~-l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~n 548 (720)
T KOG0939|consen 470 LLECYFTRSFYKHILGLPVTYHDMESADPEYYKSLVWILKNDISDT-LELTFSEEDDEFGVESVVELKPGGAKIYVTEAN 548 (720)
T ss_pred hhhheeeHHHHhhccCCceeeeehhhcChHHhhceeehhcCCcccc-eeEEEEEeeccccccceeecccCCCceeecccc
Confidence 6899999999999999999999999999999999999999999987 999999999999988999999999999999999
Q ss_pred HHHHhccc
Q psy14614 82 KKYRTCPH 89 (92)
Q Consensus 82 ~~eYv~~~ 89 (92)
|.|||++.
T Consensus 549 K~~yv~lv 556 (720)
T KOG0939|consen 549 KQEYVQLV 556 (720)
T ss_pred HHHHHHHH
Confidence 99999864
No 7
>KOG4427|consensus
Probab=99.79 E-value=5.5e-20 Score=147.77 Aligned_cols=88 Identities=32% Similarity=0.393 Sum_probs=80.2
Q ss_pred CeeecCCCHHHHHhhcCCCC--CcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccC
Q psy14614 1 MYRQRGTLVVSYSPHSSRPV--ALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVT 78 (92)
Q Consensus 1 ~~id~~f~~~f~K~lLg~~~--tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT 78 (92)
+.+|+||+.+|..++||..- .++.|.++||++|+||.+++.+|-+-.||+||||++++..|+..++||+|||+.|+||
T Consensus 821 IvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVt 900 (1096)
T KOG4427|consen 821 IVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVT 900 (1096)
T ss_pred eEEecccHHHHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceecc
Confidence 36899999999999999874 6899999999999999999977544334999999999999999999999999999999
Q ss_pred hhhHHHHhcc
Q psy14614 79 EKNKKYRTCP 88 (92)
Q Consensus 79 ~~N~~eYv~~ 88 (92)
++||..||++
T Consensus 901 neNKi~YIH~ 910 (1096)
T KOG4427|consen 901 NENKIQYIHA 910 (1096)
T ss_pred ccchHHHHHH
Confidence 9999999975
No 8
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.77 E-value=3.5e-19 Score=130.62 Aligned_cols=89 Identities=34% Similarity=0.365 Sum_probs=70.9
Q ss_pred eeecCCCHHHHHhhc-CCCCCcchHhhhcHHHHHHHHHHHhCCC--Cc-cceeeeEEEEeee-CCeeEEEeccCCCCccc
Q psy14614 2 YRQRGTLVVSYSPHS-SRPVALSDLESLDNEFHQSLLWIKEHDV--TN-EVLDLNFAVTEEI-FGQAKERELKPGGRNIA 76 (92)
Q Consensus 2 ~id~~f~~~f~K~lL-g~~~tl~DL~~~Dp~l~~sL~~ll~~d~--~~-~~l~l~Ft~~~~~-~g~~~~veL~p~G~~i~ 76 (92)
.++++||++|||+|+ |.+++++|++++||+++++|++|++++. ++ .+++++|+++... .|..+++||+|||++++
T Consensus 63 ~l~~~f~~~~~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~ 142 (317)
T PF00632_consen 63 PLPLPFSPAFWKYLLSGEPLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIP 142 (317)
T ss_dssp -ESSEB-HHHHHHHT-T----HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB
T ss_pred ccccCcCHHHHHHHhcCCCCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccc
Confidence 478999999999999 9999999999999999999999996532 21 1399999987654 56778999999999999
Q ss_pred cChhhHHHHhcccc
Q psy14614 77 VTEKNKKYRTCPHS 90 (92)
Q Consensus 77 VT~~N~~eYv~~~~ 90 (92)
||.+|+.+||+++.
T Consensus 143 Vt~~N~~eyv~~~~ 156 (317)
T PF00632_consen 143 VTNENKEEYVRLLA 156 (317)
T ss_dssp -TTTTHHHHHHHHH
T ss_pred cchhhhhHHHHhhh
Confidence 99999999998653
No 9
>KOG0170|consensus
Probab=99.64 E-value=1.8e-16 Score=123.42 Aligned_cols=81 Identities=23% Similarity=0.232 Sum_probs=72.0
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHh------------C--------------CCCccceeeeEEE
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKE------------H--------------DVTNEVLDLNFAV 55 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~------------~--------------d~~~~~l~l~Ft~ 55 (92)
++|+||+++|||.++|+++|.+|+..+||+++++|..|.. . .+| ||+|+||+
T Consensus 349 ildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iE--dL~LdFTL 426 (621)
T KOG0170|consen 349 ILDLPLSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIE--DLSLDFTL 426 (621)
T ss_pred eEeeeccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchh--hceeeEec
Confidence 6899999999999999999999999999999999999863 0 124 49999999
Q ss_pred EeeeCCeeEEEeccCCCCccccChhhHHHHhccc
Q psy14614 56 TEEIFGQAKERELKPGGRNIAVTEKNKKYRTCPH 89 (92)
Q Consensus 56 ~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~~~ 89 (92)
+. ...+||+|||++++||..|.+||++..
T Consensus 427 PG-----~p~ieL~p~g~~~~V~~~NleEYi~~V 455 (621)
T KOG0170|consen 427 PG-----FPDIELIPGGANKPVTISNLEEYIHGV 455 (621)
T ss_pred CC-----CCCeeeccCCCCCccccccHHHHHHHH
Confidence 83 368999999999999999999999764
No 10
>KOG0940|consensus
Probab=99.60 E-value=1.1e-16 Score=120.97 Aligned_cols=84 Identities=43% Similarity=0.631 Sum_probs=78.6
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N 81 (92)
++|.. .++|||+|++++++++|.+.+|++.|+|+.|++++++.. +++|+++...+|+....+|+|+|+++.||.+|
T Consensus 122 ~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en~~~~---~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n 197 (358)
T KOG0940|consen 122 FTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIRENDPTN---DLTFSVESEVLGQITTQELKPNGANIQVTEEN 197 (358)
T ss_pred ecCCC-ceehhhhhhcCccccCchhhcCccccccccccccCCccc---chhhhcchhhcCCccceeecCCCccccccccc
Confidence 45555 899999999999999999999999999999999998875 89999999999999999999999999999999
Q ss_pred HHHHhccc
Q psy14614 82 KKYRTCPH 89 (92)
Q Consensus 82 ~~eYv~~~ 89 (92)
+++||.+.
T Consensus 198 ~~~yi~~l 205 (358)
T KOG0940|consen 198 KKEYIMLL 205 (358)
T ss_pred HHHHHHHH
Confidence 99999764
No 11
>KOG0943|consensus
Probab=99.32 E-value=9.2e-13 Score=110.63 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=68.9
Q ss_pred ecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeC-C------eeEEEeccCCCCccc
Q psy14614 4 QRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIF-G------QAKERELKPGGRNIA 76 (92)
Q Consensus 4 d~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~-g------~~~~veL~p~G~~i~ 76 (92)
.+.|.+.++|.|||.++.|+|+..+||.+|.+|+.|........ ++-.|+.-.-.+ | ...+|+|+|||.+|+
T Consensus 2763 PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsSd-~DadFS~md~aa~gdlckee~a~qVeL~PNGdeil 2841 (3015)
T KOG0943|consen 2763 PIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSSD-ADADFSAMDLAAAGDLCKEEGAGQVELIPNGDEIL 2841 (3015)
T ss_pred ceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCccc-ccchhhHHHHhhccchhhhcCceeEEEecCCceee
Confidence 46899999999999999999999999999999999986544221 444454432111 2 246899999999999
Q ss_pred cChhhHHHHhcccc
Q psy14614 77 VTEKNKKYRTCPHS 90 (92)
Q Consensus 77 VT~~N~~eYv~~~~ 90 (92)
||.+|+.|||++|.
T Consensus 2842 VnkdNViEYV~KYA 2855 (3015)
T KOG0943|consen 2842 VNKDNVIEYVRKYA 2855 (3015)
T ss_pred ecchhHHHHHHHHH
Confidence 99999999999885
No 12
>PRK13704 plasmid SOS inhibition protein A; Provisional
Probab=65.38 E-value=3.1 Score=30.38 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=30.1
Q ss_pred cCCCHHHHHhhcCCC-CCcchHhhhcHHH-------HHHHHHHHh
Q psy14614 5 RGTLVVSYSPHSSRP-VALSDLESLDNEF-------HQSLLWIKE 41 (92)
Q Consensus 5 ~~f~~~f~K~lLg~~-~tl~DL~~~Dp~l-------~~sL~~ll~ 41 (92)
.|.+++|||.|-|.. ++..|+..+||.+ .+..+++..
T Consensus 38 ~PYa~aFfr~LtGs~rI~~~dvr~~~p~~~~~~~r~~~~~~~~~A 82 (240)
T PRK13704 38 YPYAKAFFRCLNGSRRISLSDLRFFMPSLNTPEERHGNRLQWLEA 82 (240)
T ss_pred chHHHHHHHHhcCCCcccHHHHHHhCCCCCCcccccchHHHHHHH
Confidence 467789999999977 8999999999998 455566653
No 13
>PF06952 PsiA: PsiA protein; InterPro: IPR009713 This family consists of several Enterobacterial PsiA proteins. The function of PsiA is unknown although it is thought that it may affect the generation of an SOS signal in Escherichia coli [].
Probab=50.09 E-value=6.8 Score=28.64 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=25.7
Q ss_pred ecCCCHHHHHhhcCCC-CCcchHhhhcHHHH
Q psy14614 4 QRGTLVVSYSPHSSRP-VALSDLESLDNEFH 33 (92)
Q Consensus 4 d~~f~~~f~K~lLg~~-~tl~DL~~~Dp~l~ 33 (92)
..|.+.+|+|.|-|.+ ++..|+..++|.+.
T Consensus 37 ~~Pya~aFfR~L~G~~rI~~~dlr~i~~~~~ 67 (238)
T PF06952_consen 37 AMPYARAFFRVLNGSGRISSKDLRQIPPLYW 67 (238)
T ss_pred cchhHHHHHHHhcCCCccchhhhhhcCcccC
Confidence 3577899999999977 99999999998764
No 14
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=42.17 E-value=14 Score=22.76 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=14.5
Q ss_pred CCcchHhhhcHHHHHHHHH
Q psy14614 20 VALSDLESLDNEFHQSLLW 38 (92)
Q Consensus 20 ~tl~DL~~~Dp~l~~sL~~ 38 (92)
+.++||..+||+++..+..
T Consensus 35 Vd~~dL~~f~~~L~~~l~~ 53 (121)
T PF14551_consen 35 VDLDDLREFDPDLAEALIE 53 (121)
T ss_dssp EEHHHHHHH-HHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHHH
Confidence 6789999999988876543
No 15
>PF01281 Ribosomal_L9_N: Ribosomal protein L9, N-terminal domain; InterPro: IPR020070 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=38.32 E-value=24 Score=19.38 Aligned_cols=19 Identities=32% Similarity=0.245 Sum_probs=16.7
Q ss_pred eccCCCCccccChhhHHHH
Q psy14614 67 ELKPGGRNIAVTEKNKKYR 85 (92)
Q Consensus 67 eL~p~G~~i~VT~~N~~eY 85 (92)
.|.|.|.-+..|.+|..+|
T Consensus 29 ~L~p~~~A~~at~~~~~~~ 47 (48)
T PF01281_consen 29 FLIPQGLAVYATPENLKQL 47 (48)
T ss_dssp TTTTTTSEEECSHHHHHHH
T ss_pred hccCCCceeeCCHHHHHhc
Confidence 5889999999999999875
No 16
>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if, and only if, the species is capable of endospore formation. In Bacillus subtilis SpoIIID is a DNA binding protein that is involved in gene repression as well as activation [].; PDB: 2L0K_A.
Probab=34.19 E-value=48 Score=20.39 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=16.2
Q ss_pred chHhhhcHHHHHHHHHHHhC
Q psy14614 23 SDLESLDNEFHQSLLWIKEH 42 (92)
Q Consensus 23 ~DL~~~Dp~l~~sL~~ll~~ 42 (92)
+.|..+||++|...+.+++.
T Consensus 42 eRL~~in~~La~eV~~vL~~ 61 (82)
T PF12116_consen 42 ERLPKINPELAREVRKVLDY 61 (82)
T ss_dssp THHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 56889999999999999863
No 17
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=34.04 E-value=57 Score=21.55 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHhhc--CCCCCcchHhh-h---cHHHHHHHHHHHhCC
Q psy14614 11 SYSPHS--SRPVALSDLES-L---DNEFHQSLLWIKEHD 43 (92)
Q Consensus 11 f~K~lL--g~~~tl~DL~~-~---Dp~l~~sL~~ll~~d 43 (92)
.|+.|| +.|.|.++|++ + -...++||+.|.+..
T Consensus 32 v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~G 70 (126)
T COG3355 32 VYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAG 70 (126)
T ss_pred HHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcC
Confidence 577777 78899999986 2 245678999998753
No 18
>PLN02283 alpha-dioxygenase
Probab=33.90 E-value=30 Score=28.61 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHhhcCCC--CCcchHhhhcHHHHHHHHHHHhCCCCc
Q psy14614 12 YSPHSSRP--VALSDLESLDNEFHQSLLWIKEHDVTN 46 (92)
Q Consensus 12 ~K~lLg~~--~tl~DL~~~Dp~l~~sL~~ll~~d~~~ 46 (92)
|++.+|.+ -+++||.. ||++.+.|+.+-..++++
T Consensus 492 fR~~~gL~~~~sFedlt~-d~e~~~~L~~lY~~~vdd 527 (633)
T PLN02283 492 FRRNLLMIPISKWEDLTD-DEEAIEVLREVYGDDVEK 527 (633)
T ss_pred HHHHcCCCCCCCHHHcCC-CHHHHHHHHHHhCCCHHH
Confidence 56666755 37899986 899999999998756665
No 19
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=31.58 E-value=48 Score=17.51 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=16.8
Q ss_pred HHHHhhcCCCCCcchHhhhcHHH
Q psy14614 10 VSYSPHSSRPVALSDLESLDNEF 32 (92)
Q Consensus 10 ~f~K~lLg~~~tl~DL~~~Dp~l 32 (92)
++|.|..|.|++.++.+.+...+
T Consensus 13 aLyHQF~GtPvs~~~~~~le~ai 35 (38)
T PF04036_consen 13 ALYHQFVGTPVSPETAESLEKAI 35 (38)
T ss_dssp HHHHHHTT-EESTTTHHHHHHHH
T ss_pred HHHHHhcCCcCCcchHHHHHHHH
Confidence 57899999999988777665443
No 20
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.89 E-value=55 Score=20.08 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHhhcCCC---CCcchHhhhcHHHHHHHHHHHh
Q psy14614 11 SYSPHSSRP---VALSDLESLDNEFHQSLLWIKE 41 (92)
Q Consensus 11 f~K~lLg~~---~tl~DL~~~Dp~l~~sL~~ll~ 41 (92)
-.+++.|.. +++.||..+-..+-.+|..++.
T Consensus 34 ~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~ 67 (100)
T PF01486_consen 34 ELRHLMGEDLESLSLKELQQLEQQLESALKRVRS 67 (100)
T ss_pred HHhccccccccccchHHHHHHHHhhhhhHHHHHH
Confidence 356788877 6789999999999999998874
No 21
>COG5475 Uncharacterized small protein [Function unknown]
Probab=27.07 E-value=42 Score=19.32 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.4
Q ss_pred EEEeccCCCCccccChh
Q psy14614 64 KERELKPGGRNIAVTEK 80 (92)
Q Consensus 64 ~~veL~p~G~~i~VT~~ 80 (92)
.+|.|+.||-...||.-
T Consensus 9 dvV~lKsGGP~Mtvs~~ 25 (60)
T COG5475 9 DVVTLKSGGPRMTVSGY 25 (60)
T ss_pred cEEEeecCCceEEEecc
Confidence 47899999988888753
No 22
>PF13960 DUF4218: Domain of unknown function (DUF4218)
Probab=26.71 E-value=87 Score=20.71 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHhhcCCCCCcchHhhhcHHHHHHHHHHH
Q psy14614 10 VSYSPHSSRPVALSDLESLDNEFHQSLLWIK 40 (92)
Q Consensus 10 ~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll 40 (92)
.|+++|..+.++.++|..+...+..-+..|.
T Consensus 8 ~ff~~l~sKvi~~~~l~~L~~~I~~~lc~lE 38 (128)
T PF13960_consen 8 NFFNQLCSKVIDPDDLDELEEEIVETLCQLE 38 (128)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999888877774
No 23
>PF05293 ASFV_L11L: African swine fever virus (ASFV) L11L protein; InterPro: IPR007957 L11L is an integral membrane protein of the African swine fever virus, which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic pigs [].
Probab=25.22 E-value=42 Score=19.89 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=15.9
Q ss_pred eeecCCCHHHHHhhcCCCCCcc
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALS 23 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~ 23 (92)
+-|..||+.+|.++-+...++.
T Consensus 43 lrdfcfppmlw~~l~n~t~~~n 64 (78)
T PF05293_consen 43 LRDFCFPPMLWTQLNNITSPFN 64 (78)
T ss_pred HHHccCCHHHHHHHHcccchHH
Confidence 3578899999988876655543
No 24
>PRK13711 conjugal transfer protein TrbJ; Provisional
Probab=24.78 E-value=61 Score=20.39 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=9.9
Q ss_pred ceeeeEEEEeee
Q psy14614 48 VLDLNFAVTEEI 59 (92)
Q Consensus 48 ~l~l~Ft~~~~~ 59 (92)
+|||||+++..-
T Consensus 65 slcltfsvsvvf 76 (113)
T PRK13711 65 SLCLTFSVSVVF 76 (113)
T ss_pred EEeeEEEEEEEE
Confidence 699999998753
No 25
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.44 E-value=43 Score=21.16 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=12.3
Q ss_pred EEEeccCCCCccccChhhHHHHh
Q psy14614 64 KERELKPGGRNIAVTEKNKKYRT 86 (92)
Q Consensus 64 ~~veL~p~G~~i~VT~~N~~eYv 86 (92)
..+--.||++.|.+.-+|++-+|
T Consensus 34 ~ivas~pgis~ieik~E~kkL~v 56 (96)
T COG4004 34 RIVASSPGISRIEIKPENKKLLV 56 (96)
T ss_pred EEEEecCCceEEEEecccceEEE
Confidence 34455555555555555555444
No 26
>PF10512 Borealin: Cell division cycle-associated protein 8 ; InterPro: IPR018867 The chromosomal passenger complex of Aurora B kinase, INCENP, and Survivin has essential regulatory roles at centromeres and the central spindle in mitosis. Cell division cycle-associated protein 8, also known as Borealin, is also a member of the complex. Approximately half of Aurora B in mitotic cells is complexed with INCENP, Borealin, and Survivin. Depletion of Borealin by RNA interference delays mitotic progression and results in kinetochore-spindle mis-attachments and an increase in bipolar spindles associated with ectopic asters []. ; PDB: 2KDD_A.
Probab=23.02 E-value=76 Score=20.56 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=19.8
Q ss_pred hhcCCCCCcchHhhhcHHHHHHHHHHHh
Q psy14614 14 PHSSRPVALSDLESLDNEFHQSLLWIKE 41 (92)
Q Consensus 14 ~lLg~~~tl~DL~~~Dp~l~~sL~~ll~ 41 (92)
+|++..+.-.|++.+|++.-+.|+.|..
T Consensus 79 ~l~~~dl~~~~l~~Ld~~tl~~ik~L~~ 106 (116)
T PF10512_consen 79 RLLASDLDREDLEQLDPETLNQIKTLQA 106 (116)
T ss_dssp -EETTT--HHHHHTS-HHHHHHHHHHHH
T ss_pred EcchhhcCHHHHHhcCHHHHHHHHHHHH
Confidence 4556667778999999999999988864
No 27
>PF04692 PDGF_N: Platelet-derived growth factor, N terminal region; InterPro: IPR006782 Platelet-derived growth factor (PDGF) [, ] is a potent mitogen for cells of mesenchymal origin, including smooth muscle cells and glial cells. In both mouse and human, the PDGF signalling network consists of four ligands, PDGFA-D, and two receptors, PDGFRalpha and PDGFRbeta. All PDGFs function as secreted, disulphide-linked homodimers, but only PDGFA and B can form functional heterodimers. PDGFRs also function as homo- and heterodimers. All known PDGFs have characteristic `PDGF domains', which include eight conserved cysteines that are involved in inter- and intramolecular bonds. Alternate splicing of the A chain transcript can give rise to two different forms that differ only in their C-terminal extremity. The transforming protein of Woolly monkey sarcoma virus (WMSV) (Simian sarcoma virus), encoded by the v-sis oncogene, is derived from the B chain of PDGF. PDGFs are mitogenic during early developmental stages, driving the proliferation of undifferentiated mesenchyme and some progenitor populations. During later maturation stages, PDGF signalling has been implicated in tissue remodelling and cellular differentiation, and in inductive events involved in patterning and morphogenesis. In addition to driving mesenchymal proliferation, PDGFs have been shown to direct the migration, differentiation and function of a variety of specialised mesenchymal and migratory cell types, both during development and in the adult animal []. PDGF is structurally related to a number of other growth factors which also form disulphide-linked homo- or heterodimers. This domain consists of the N-terminal regions of PGDF A and B.; GO: 0008083 growth factor activity, 0016020 membrane; PDB: 3MJK_Y 3MJG_A 1PDG_B.
Probab=22.41 E-value=59 Score=19.77 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=13.1
Q ss_pred ecCCCHHHHHhhcCCCCC-cchHh
Q psy14614 4 QRGTLVVSYSPHSSRPVA-LSDLE 26 (92)
Q Consensus 4 d~~f~~~f~K~lLg~~~t-l~DL~ 26 (92)
+.|||..+|..|-+-++. ++||+
T Consensus 2 ~~piP~eliErLs~S~I~SIsDLQ 25 (78)
T PF04692_consen 2 GDPIPEELIERLSNSEIRSISDLQ 25 (78)
T ss_dssp ---S-HHHHHHHHTS---SHHHHH
T ss_pred CCcccHHHHHHHhcCCcccHHHHH
Confidence 358999999999888764 66654
No 28
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=22.16 E-value=1.1e+02 Score=17.41 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=16.5
Q ss_pred HHHHhhcCCCCCcchHhhhcHHH
Q psy14614 10 VSYSPHSSRPVALSDLESLDNEF 32 (92)
Q Consensus 10 ~f~K~lLg~~~tl~DL~~~Dp~l 32 (92)
..++...|+++++.||..+-..+
T Consensus 21 ~~~~~~~g~~l~~~~l~~~~~~l 43 (76)
T PF08479_consen 21 AILAPYIGRCLTLADLQQLADAL 43 (76)
T ss_dssp HHHGGGTTSBB-HHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 45677899999999999754444
No 29
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.77 E-value=66 Score=17.34 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=13.4
Q ss_pred CccccChhhHHHHhcc
Q psy14614 73 RNIAVTEKNKKYRTCP 88 (92)
Q Consensus 73 ~~i~VT~~N~~eYv~~ 88 (92)
...|||..+|.-|.++
T Consensus 21 ~~gPIt~sTR~vy~kk 36 (44)
T smart00540 21 PPGPITDTTRKLYEKK 36 (44)
T ss_pred CCCCcCcchHHHHHHH
Confidence 4678999999999864
Done!