Query psy14614
Match_columns 92
No_of_seqs 175 out of 1019
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 16:14:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvd_A SMAD ubiquitination reg 99.9 6.1E-28 2.1E-32 181.6 9.3 88 2-90 131-218 (380)
2 2oni_A E3 ubiquitin-protein li 99.9 8.1E-28 2.8E-32 181.6 7.9 87 2-90 151-237 (392)
3 1nd7_A WW domain-containing pr 99.9 5.1E-28 1.7E-32 181.6 5.7 89 2-90 130-218 (374)
4 3olm_A E3 ubiquitin-protein li 99.9 3.6E-27 1.2E-31 179.8 7.9 88 2-90 181-268 (429)
5 3h1d_A E3 ubiquitin-protein li 99.9 5.6E-28 1.9E-32 183.2 2.6 89 2-90 154-242 (405)
6 1c4z_A E6AP, ubiquitin-protein 99.9 1.1E-26 3.7E-31 173.7 6.5 89 1-90 110-201 (358)
7 2yvq_A Carbamoyl-phosphate syn 39.6 18 0.00062 22.8 2.3 18 1-18 1-18 (143)
8 2hba_A BL17, 50S ribosomal pro 38.7 14 0.00049 19.8 1.4 21 67-87 29-49 (52)
9 2yh6_A Lipoprotein 34, BAMC; l 35.9 45 0.0015 20.5 3.6 38 49-87 57-99 (112)
10 3v46_A Cell division control p 28.4 29 0.001 23.0 1.9 29 64-92 14-42 (170)
11 2kdd_A Borealin; protein dimer 25.8 43 0.0015 19.3 2.0 25 16-40 38-62 (76)
No 1
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.1e-28 Score=181.60 Aligned_cols=88 Identities=35% Similarity=0.592 Sum_probs=84.5
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N 81 (92)
++|++||++|||+|+|++++++||+++||++|+||+||+++++++. +++||+++.+.+|...++||+|||++|+||++|
T Consensus 131 ~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~~~-l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N 209 (380)
T 1zvd_A 131 YIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGV-LDHTFCVEHNAYGEIIQHELKPNGKSIPVNEEN 209 (380)
T ss_dssp CCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHSCCTTT-SCCCSEEEEEETTEEEEEESSTTCCCCCCTTTT
T ss_pred eeCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhCCcccc-ccceeEEeeecCCcEeEEecCCCCCCCcccccc
Confidence 6899999999999999999999999999999999999999999875 999999999999999999999999999999999
Q ss_pred HHHHhcccc
Q psy14614 82 KKYRTCPHS 90 (92)
Q Consensus 82 ~~eYv~~~~ 90 (92)
|.|||+++.
T Consensus 210 ~~eYv~l~~ 218 (380)
T 1zvd_A 210 KKEYVRLYV 218 (380)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 2
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.94 E-value=8.1e-28 Score=181.60 Aligned_cols=87 Identities=37% Similarity=0.503 Sum_probs=83.6
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N 81 (92)
++|++||++|||+|+|++++++||+++||++|+||+||+++++++ ++|||+++.+.+|...++||+|||++|+||++|
T Consensus 151 ~ld~~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~d~~~--l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N 228 (392)
T 2oni_A 151 LLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMVTNEN 228 (392)
T ss_dssp CCSSCBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHSCCGG--GCCBSEEEEEETTEEEEEESSTTGGGCBCCTTT
T ss_pred ccCccchHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHhcCChhH--ceeeEEEeeecCCceeEEecCCCCccCccchhh
Confidence 689999999999999999999999999999999999999999887 999999999999999999999999999999999
Q ss_pred HHHHhcccc
Q psy14614 82 KKYRTCPHS 90 (92)
Q Consensus 82 ~~eYv~~~~ 90 (92)
|.|||+++.
T Consensus 229 ~~eYv~l~~ 237 (392)
T 2oni_A 229 KREYIDLVI 237 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 3
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.94 E-value=5.1e-28 Score=181.64 Aligned_cols=89 Identities=35% Similarity=0.577 Sum_probs=84.8
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N 81 (92)
++|++||++|||+|+|++++++||+++||++|+||+||+++++++.+++++|+++.+.+|...++||+|||++|+||++|
T Consensus 130 ~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N 209 (374)
T 1nd7_A 130 FIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEEN 209 (374)
T ss_dssp CCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTT
T ss_pred eeCCcCCHHHHHHHhCCCCCHHHHHHhhHHHHHhhhhhccCChhhhhcceeEEEeeccCCceeeEecCCCCcCceecccc
Confidence 68999999999999999999999999999999999999999988766899999999999998999999999999999999
Q ss_pred HHHHhcccc
Q psy14614 82 KKYRTCPHS 90 (92)
Q Consensus 82 ~~eYv~~~~ 90 (92)
|.|||+++.
T Consensus 210 ~~eYv~l~~ 218 (374)
T 1nd7_A 210 KDEYIGLMT 218 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 4
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-27 Score=179.80 Aligned_cols=88 Identities=34% Similarity=0.491 Sum_probs=84.5
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N 81 (92)
++|++||++|||+|+|++++++||+++||++|+||++|+++++++. ++++|+++.+.+|...++||+|||++|+||++|
T Consensus 181 ~ld~~f~~~f~k~Llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~~~-l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~N 259 (429)
T 3olm_A 181 FLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDGV-LDLTFSADDERFGEVVTVDLKPDGRNIEVTDGN 259 (429)
T ss_dssp CCCCCBCHHHHHHHTTCCCCHHHHHHHCHHHHHHHHHHTTSCCTTT-CCCBSEEEEEETTEEEEEESSTTGGGSBCCTTT
T ss_pred ccCCCcCHHHHHhhcCCCCCHHHHHHHhHHHHHHHHHHHhCCHHHh-hcCceEEEeccCCceeeEeccCCCcccccCchh
Confidence 6899999999999999999999999999999999999999999876 999999999999999999999999999999999
Q ss_pred HHHHhcccc
Q psy14614 82 KKYRTCPHS 90 (92)
Q Consensus 82 ~~eYv~~~~ 90 (92)
|.+||+++.
T Consensus 260 k~eYV~l~~ 268 (429)
T 3olm_A 260 KKEYVELYT 268 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 5
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.94 E-value=5.6e-28 Score=183.25 Aligned_cols=89 Identities=35% Similarity=0.413 Sum_probs=83.6
Q ss_pred eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614 2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81 (92)
Q Consensus 2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N 81 (92)
++|++||++|||+|||++++++||+++||++|+||+||+++++++.++++||+++.+.+|...++||+|||++|+||++|
T Consensus 154 ~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~N 233 (405)
T 3h1d_A 154 LLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEEN 233 (405)
T ss_dssp CCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTT
T ss_pred ccCCCccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHh
Confidence 68999999999999999999999999999999999999999988755789999988889988889999999999999999
Q ss_pred HHHHhcccc
Q psy14614 82 KKYRTCPHS 90 (92)
Q Consensus 82 ~~eYv~~~~ 90 (92)
|.|||+++.
T Consensus 234 k~eYV~l~~ 242 (405)
T 3h1d_A 234 KKEYVHLVC 242 (405)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.93 E-value=1.1e-26 Score=173.68 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=81.3
Q ss_pred CeeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCC--CccceeeeEEEEe-eeCCeeEEEeccCCCCcccc
Q psy14614 1 MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDV--TNEVLDLNFAVTE-EIFGQAKERELKPGGRNIAV 77 (92)
Q Consensus 1 ~~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~--~~~~l~l~Ft~~~-~~~g~~~~veL~p~G~~i~V 77 (92)
.++|++||++|||+|+|++++++||+++||++|+||++|++++. ++ ++++||+++. +.+|...++||+|||++|+|
T Consensus 110 ~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~~~-~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~V 188 (358)
T 1c4z_A 110 CILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVED-DMMITFQISQTDLFGNPMMYDLKENGDKIPI 188 (358)
T ss_dssp CCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHHH-HTCCBSEEEECCTTTCCEEEESSTTTTTSBC
T ss_pred CCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhh-hccceEEEeccccCCCeeeeecCCCCccccc
Confidence 36899999999999999999999999999999999999998753 33 3999999985 67899999999999999999
Q ss_pred ChhhHHHHhcccc
Q psy14614 78 TEKNKKYRTCPHS 90 (92)
Q Consensus 78 T~~N~~eYv~~~~ 90 (92)
|++||.|||+++.
T Consensus 189 T~~N~~eYv~l~~ 201 (358)
T 1c4z_A 189 TNENRKEFVNLYS 201 (358)
T ss_dssp CTTTHHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 9999999998864
No 7
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=39.58 E-value=18 Score=22.79 Aligned_cols=18 Identities=6% Similarity=-0.239 Sum_probs=12.6
Q ss_pred CeeecCCCHHHHHhhcCC
Q psy14614 1 MYRQRGTLVVSYSPHSSR 18 (92)
Q Consensus 1 ~~id~~f~~~f~K~lLg~ 18 (92)
|.||-.|..+|||.+++.
T Consensus 1 mg~~~~~~~A~~Ka~~aa 18 (143)
T 2yvq_A 1 GSSGSSGHTAFLKAMLST 18 (143)
T ss_dssp ----CCCCHHHHHHHTSC
T ss_pred CCCcCCHHHHHHHHHHhc
Confidence 678999999999999943
No 8
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=38.75 E-value=14 Score=19.84 Aligned_cols=21 Identities=29% Similarity=0.096 Sum_probs=17.8
Q ss_pred eccCCCCccccChhhHHHHhc
Q psy14614 67 ELKPGGRNIAVTEKNKKYRTC 87 (92)
Q Consensus 67 eL~p~G~~i~VT~~N~~eYv~ 87 (92)
-|+|.|--++.|.+|..++-.
T Consensus 29 ~LiP~g~A~~AT~~n~~~~~~ 49 (52)
T 2hba_A 29 FLFKQGLAIEATPANLKALEA 49 (52)
T ss_dssp TTTTTTSEEECCHHHHHHHHH
T ss_pred hhccCCceeeCCHHHHHHHHH
Confidence 388999999999999988743
No 9
>2yh6_A Lipoprotein 34, BAMC; lipid binding protein; 1.55A {Escherichia coli}
Probab=35.85 E-value=45 Score=20.51 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=28.0
Q ss_pred eeeeEEEEeeeCC-----eeEEEeccCCCCccccChhhHHHHhc
Q psy14614 49 LDLNFAVTEEIFG-----QAKERELKPGGRNIAVTEKNKKYRTC 87 (92)
Q Consensus 49 l~l~Ft~~~~~~g-----~~~~veL~p~G~~i~VT~~N~~eYv~ 87 (92)
+..-|.++...-| .+..+++..+|.. ++|..+++.|--
T Consensus 57 ~~~RY~I~~~~~g~~~~l~V~lld~~q~g~~-~~s~~~kqRY~~ 99 (112)
T 2yh6_A 57 YRGRYQISVKPQGYQQAVTVKLLNLEQAGKP-VADAASMQRYST 99 (112)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEETTEE-ECCHHHHHHHHH
T ss_pred cceEEEEEEcccCCeEEEEEEEhhhhcCCCc-cCCHHHHHHHHH
Confidence 5566777664434 2567888998887 999999999953
No 10
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=28.37 E-value=29 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.038 Sum_probs=24.3
Q ss_pred EEEeccCCCCccccChhhHHHHhccccCC
Q psy14614 64 KERELKPGGRNIAVTEKNKKYRTCPHSTV 92 (92)
Q Consensus 64 ~~veL~p~G~~i~VT~~N~~eYv~~~~~~ 92 (92)
..+=|+|.+..-.+|..|.++|++.-++|
T Consensus 14 ~PIIiVp~s~sSlitm~NiK~FLedg~fv 42 (170)
T 3v46_A 14 DPIILIPSAASSILTVANIKQFLLESKYV 42 (170)
T ss_dssp CCEEECCCCTTCSSCTTTHHHHHHHCCCC
T ss_pred CCEEEECCCccchhhHHHHHHHHhcCeec
Confidence 46789999999999999999999765543
No 11
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=25.77 E-value=43 Score=19.34 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=19.5
Q ss_pred cCCCCCcchHhhhcHHHHHHHHHHH
Q psy14614 16 SSRPVALSDLESLDNEFHQSLLWIK 40 (92)
Q Consensus 16 Lg~~~tl~DL~~~Dp~l~~sL~~ll 40 (92)
|--.++--||..+||+-..+++.|.
T Consensus 38 LASdl~~~di~~Ld~eAl~nIk~Ls 62 (76)
T 2kdd_A 38 LASDLQRHSIAQLDPEALGNIKKLS 62 (76)
T ss_dssp ETTTCCHHHHHTSCHHHHHHHHHHH
T ss_pred hhhhhchhhHhhcCHHHHHHHHHHH
Confidence 3334566799999999999998875
Done!