RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14614
(92 letters)
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 108 bits (271), Expect = 6e-30
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 18 RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77
+ + + DLES+D EF+ SL+WI+++++ L++ F+V EI G+ +LK GG NI V
Sbjct: 146 KKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILV 205
Query: 78 TEKNKK 83
TE+NK
Sbjct: 206 TEENKD 211
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 108 bits (271), Expect = 9e-30
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 18 RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77
+ V +D+ES D F+Q L+++ E+DV+ DL F+ + FG A+ R+LKP G NI V
Sbjct: 170 KSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILV 229
Query: 78 TEKNKK 83
TE+NKK
Sbjct: 230 TEENKK 235
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 106 bits (268), Expect = 2e-29
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77
+ + L D+E +D + H SL+WI E+D+T VLD F V +G+ + ELKP G++I V
Sbjct: 147 KSITLDDMELVDPDLHNSLVWILENDIT-GVLDHTFCVEHNAYGEIIQHELKPNGKSIPV 205
Query: 78 TEKNKK 83
E+NKK
Sbjct: 206 NEENKK 211
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 105 bits (265), Expect = 7e-29
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 18 RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77
+ V L D+E +D E + SL W+ E+ + VLDL F+ +E FG+ +LKP GRNI V
Sbjct: 197 KKVVLQDMEGVDAEVYNSLNWMLENSID-GVLDLTFSADDERFGEVVTVDLKPDGRNIEV 255
Query: 78 TEKNKK 83
T+ NKK
Sbjct: 256 TDGNKK 261
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 103 bits (260), Expect = 3e-28
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 18 RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77
+ + L+D+ES+D+E++ SL WI E+D T LDL F + EE FGQ + +LKP G I V
Sbjct: 167 KQITLNDMESVDSEYYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMV 224
Query: 78 TEKNKK 83
T +NK+
Sbjct: 225 TNENKR 230
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 94.1 bits (235), Expect = 8e-25
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 18 RPVALSDLESLDNEFHQSLLWIKEH--DVTNEVLDLNFAVTE-EIFGQAKERELKPGGRN 74
+ DL +QSL + E+ +V + + + F +++ ++FG +LK G
Sbjct: 127 KKGTFRDLGDSHPVLYQSLKDLLEYEGNVE-DDMMITFQISQTDLFGNPMMYDLKENGDK 185
Query: 75 IAVTEKNKK 83
I +T +N+K
Sbjct: 186 IPITNENRK 194
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.11
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 24/62 (38%)
Query: 14 PHSSRPVALSDLESLDNEF-------HQSLL-----WIKEHDVTNEVL----DLNFAV-- 55
P S R + S N F H LL I + V N V D+ V
Sbjct: 408 PFSERKLKFS------NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 56 TE 57
T
Sbjct: 462 TF 463
Score = 27.7 bits (61), Expect = 0.57
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 27/87 (31%)
Query: 15 HSSRPVALS--DLES--------------LDNEFHQSLLWIKEHDVTNEV-LDLNFAVTE 57
+S+RP+ LS LE L +F++ L + T D
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKIL-----PEPTEGFAADDEPTTPA 58
Query: 58 EIFGQ-----AKERELKPGGRNIAVTE 79
E+ G+ + E G+ V
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLN 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.6
Identities = 5/12 (41%), Positives = 8/12 (66%), Gaps = 2/12 (16%)
Query: 12 YSPHSSRPVALS 23
Y+ S+ P AL+
Sbjct: 32 YADDSA-P-ALA 41
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 26.0 bits (58), Expect = 2.1
Identities = 4/35 (11%), Positives = 9/35 (25%), Gaps = 4/35 (11%)
Query: 1 MYRQRGTLVVSYSPHS----SRPVALSDLESLDNE 31
G +++S + L + E
Sbjct: 102 RQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKE 136
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 25.5 bits (55), Expect = 3.4
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 16 SSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKE 65
++ V + + D + ++ +LD +I Q
Sbjct: 152 TAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVIT 201
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 25.1 bits (54), Expect = 3.9
Identities = 7/49 (14%), Positives = 17/49 (34%)
Query: 20 VALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKEREL 68
+ + L + + L +K + + D + + I QA +
Sbjct: 168 LKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGM 216
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 25.1 bits (55), Expect = 4.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 63 AKERELKPGGRNIAVTEKNKKYRTCPHST 91
AK +L + + E N Y TC S
Sbjct: 18 AKYIKLADPSIEVTLIEPNTDYYTCYLSN 46
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate
binding, hydrolase; NMR {Escherichia coli K12}
Length = 167
Score = 24.0 bits (53), Expect = 6.9
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 3 RQRGTLVVSYSPHSSRPVALSDLESLD 29
+ +S H +R ++ + D
Sbjct: 74 AEHQ---LSLEGHCARQISRRLCRNYD 97
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia
coli}
Length = 150
Score = 24.0 bits (53), Expect = 7.3
Identities = 3/27 (11%), Positives = 6/27 (22%), Gaps = 3/27 (11%)
Query: 3 RQRGTLVVSYSPHSSRPVALSDLESLD 29
+ G + H + D
Sbjct: 60 EKNG---LCLKGHRGTKFTSALARQYD 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 7.8
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 28 LDNEF------HQSLLWIKEHDVTNEVLDLNF 53
LD F H S W + N + L F
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular
weight, protein tyrosine phosphatase, bacterial
phosphatase; NMR {Campylobacter jejuni}
Length = 156
Score = 24.0 bits (53), Expect = 8.9
Identities = 3/27 (11%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 3 RQRGTLVVSYSPHSSRPVALSDLESLD 29
Q + + +S+ + + D
Sbjct: 60 AQLN---IEHKNFTSKKLTQKLCDESD 83
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 23.9 bits (52), Expect = 9.5
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 14/61 (22%)
Query: 22 LSDLESL---DNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVT 78
S+ + DN + +E+ + EE+ R KP +A+
Sbjct: 94 KSEENKIPLPDNTVDFIFM----AFTFHELSEPL-KFLEELK-----RVAKPFAY-LAII 142
Query: 79 E 79
+
Sbjct: 143 D 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,330,644
Number of extensions: 64647
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 21
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)