RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14614
         (92 letters)



>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score = 65.2 bits (158), Expect = 1e-14
 Identities = 30/71 (42%), Positives = 47/71 (66%)

Query: 12  YSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPG 71
           Y    S+ + + DLES+D EF+ SL+WI+++++    L++ F+V  EI G+    +LK G
Sbjct: 140 YKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLG 199

Query: 72  GRNIAVTEKNK 82
           G NI VTE+NK
Sbjct: 200 GSNILVTEENK 210


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 48.6 bits (115), Expect = 7e-09
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 17  SRPVALSDLESLDNEFHQSLLWIKEHDVTNE-VLDLNFAVTE-EIFGQAKERELKPGGRN 74
            +     DL       +QSL  + E++   E  + + F +++ ++FG     +LK  G  
Sbjct: 124 GKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDK 183

Query: 75  IAVTEKNKK 83
           I +T +N+K
Sbjct: 184 IPITNENRK 192


>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346
          {Shewanella oneidensis [TaxId: 70863]}
          Length = 187

 Score = 25.1 bits (54), Expect = 1.2
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 29 DNEFHQSLLWIKEHDVTNEV-LDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKYRTC 87
          D  F ++++++ EHD    + L +N  +  E+    ++ +L     +  +   ++     
Sbjct: 17 DTFFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMGG 76

Query: 88 PHST 91
          P S 
Sbjct: 77 PVSQ 80


>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
           (non-catalytic) {Archaeon Thermoplasma acidophilum
           [TaxId: 2303]}
          Length = 221

 Score = 23.9 bits (51), Expect = 3.7
 Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 2/49 (4%)

Query: 46  NEVLDLNFAVTE--EIFGQAKERELKPGGRNIAVTEKNKKYRTCPHSTV 92
            E L    AVT   +    + E   +     IA      KYR      V
Sbjct: 169 KENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEV 217


>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 132

 Score = 23.5 bits (50), Expect = 4.7
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 5  RGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQ 62
          RG      S  S  P+ L+++E   N   ++   ++   V + + D NF+  E++ G+
Sbjct: 30 RGHFTGDISHFS--PIVLAEMEKDPNWLEEAAGGMQGVIVQSLLEDENFSSVEQLKGE 85


>d1nsla_ d.108.1.1 (A:) Probable acetyltransferase YdaF {Bacillus
          subtilis [TaxId: 1423]}
          Length = 180

 Score = 23.6 bits (49), Expect = 4.7
 Identities = 9/72 (12%), Positives = 16/72 (22%)

Query: 18 RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77
          R +   D E L     Q+   + +     E         E I    + +     G    +
Sbjct: 14 RLLEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETIIPDWRRQYADLNGIEAGL 73

Query: 78 TEKNKKYRTCPH 89
                      
Sbjct: 74 LYDGSLCGMISL 85


>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 236

 Score = 22.8 bits (48), Expect = 7.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 6   GTLVVSYSPHSSRPVALSDLESLDN 30
           G LV   +P S+   A+  +++L N
Sbjct: 212 GRLVTGVNPASAHSTAVRSIDALKN 236


>d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794
          {Haemophilus ducreyi [TaxId: 730]}
          Length = 186

 Score = 22.8 bits (48), Expect = 7.9
 Identities = 5/15 (33%), Positives = 11/15 (73%)

Query: 29 DNEFHQSLLWIKEHD 43
          D  F +++++I EH+
Sbjct: 18 DEYFDRTVIYICEHN 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 322,305
Number of extensions: 12291
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 9
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.4 bits)