BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14616
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 64/66 (96%)
Query: 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105
Query: 61 SEIYSL 66
SEI+SL
Sbjct: 106 SEIFSL 111
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL 161
GT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 234 GTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRC 272
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS 61
VGQL ARRAAGVVL I+EGKIAGRA+L+AGQPGTGKTAIA G AQALGPDTPFT++AGS
Sbjct: 62 VGQLAARRAAGVVLEXIREGKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGS 121
Query: 62 EIYSL 66
EI+SL
Sbjct: 122 EIFSL 126
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL 161
GT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 252 GTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRC 290
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
+VGQ AR A GV++ +IK K+AGRA+LLAG PGTGKTA+A+ +AQ LG PF M G
Sbjct: 39 LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98
Query: 61 SEIYS 65
SE+YS
Sbjct: 99 SEVYS 103
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 127 SSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160
+SPHGIP+DLLDR++II T Y +E++ I+KIR
Sbjct: 345 TSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIR 378
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
+VGQ AR A GV++ +IK K AGRA+LLAG PGTGKTA+A+ +AQ LG PF G
Sbjct: 53 LVGQENAREACGVIVELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVG 112
Query: 61 SEIYS 65
SE+YS
Sbjct: 113 SEVYS 117
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 127 SSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160
+SPHGIP+DLLDR+ II T Y +E + I+KIR
Sbjct: 256 TSPHGIPLDLLDRVXIIRTXLYTPQEXKQIIKIR 289
>pdb|2CQA|A Chain A, Solution Structure Of Rsgi Ruh-039, A Fragment Of C-
Terminal Domain Of Ruvb-Like 2 From Human Cdna
Length = 95
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 34/37 (91%)
Query: 86 QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI 122
QI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++
Sbjct: 22 QIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESL 58
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+ ILL G PGTGKT +A +A + PF ++GS+ L
Sbjct: 50 KGILLVGPPGTGKTLLARAVAGE--ANVPFFHISGSDFVEL 88
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 29 LLAGQPGTGKTAIAMGLA-QALGPDTPFTSMAGSEIYSL 66
LL G+ G GKTAIA GLA + + D P MA IYSL
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVP-EVMADCTIYSL 248
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50
G+ E K G + L AG G GKT + + L++ALG
Sbjct: 480 GLGHEHKPVG-SFLFAGPTGVGKTEVTVQLSKALG 513
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGKT IA +A G F + G EI S
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMS 276
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGKT IA +A G F + G EI S
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMS 276
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGKT IA +A G F + G EI S
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMS 276
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGKT IA +A G F + G EI S
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMS 276
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+ +LL G PGTGKT +A +A PF SM GS +
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVAGE--AHVPFFSMGGSSFIEM 83
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 29 LLAGQPGTGKTAIAMGLAQAL 49
+L G+PG GKTAIA GLAQ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQI 225
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGKT IA +A G F + G EI S
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMS 276
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+K G + +L G PG GKT +A +A + F S+ G E+ ++
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTM 550
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGKT IA +A G F + G EI S
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMS 276
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+K G + +L G PG GKT +A +A + F S+ G E+ ++
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTM 550
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 29 LLAGQPGTGKTAIAMGLAQAL 49
+L G+PG GKTAIA GLAQ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQI 225
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With
Guanidinium Chloride And Adp
Length = 397
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 29 LLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSL 66
+L G+PG GKTAI GLAQ + D P + G I SL
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVP-EGLKGKRIVSL 95
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
+ +LL G PGTGKT +A +A +G + F+ +G
Sbjct: 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52
K+G RA +L G PG GKT A +AQ LG D
Sbjct: 71 KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 29 LLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSL 66
+L G+PG GKTAI GLAQ + D P + G I SL
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVP-EGLKGKRIVSL 232
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGK+ +A +A T F S++ S++ S
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNST-FFSISSSDLVS 84
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+ ILL G PGTG T +A +A + PF ++GS+ L
Sbjct: 50 KGILLVGPPGTGATLLARAVAGE--ANVPFFHISGSDFVEL 88
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGK+ +A +A T F S++ S++ S
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNST-FFSISSSDLVS 206
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
+ G + LAG PG GKT++A +A++LG S+ G
Sbjct: 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+LLAG PG GKT +A +A G + F S+ G E+ ++
Sbjct: 47 VLLAGPPGCGKTLLAKAVANESGLN--FISVKGPELLNM 83
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
+ ++L G PGTGKT +A +A D F ++G+E+
Sbjct: 183 KGVILYGPPGTGKTLLARAVAHH--TDCKFIRVSGAEL 218
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
+ ILL G PGTGKT A +A D F + GSE+
Sbjct: 244 KGILLYGPPGTGKTLCARAVANRT--DATFIRVIGSEL 279
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
GKI + +L+ G PGTGKT +A +A PF +++GS+ +
Sbjct: 42 GKIP-KGVLMVGPPGTGKTLLAKAIAGE--AKVPFFTISGSDFVEM 84
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 28 ILLAGQPGTGKTAIAMGLAQAL 49
+L +G PGTGKTA A+ LA+ L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate
Kinase From Agrobacterium Tumefaciens, Northeast
Structural Genomics Target Atr62
Length = 191
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 22 KIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTS 57
+ G +LL+G PG+GK+ IA LA G P F S
Sbjct: 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 28 ILLAGQPGTGKTAIAMGLAQAL 49
+L +G PGTGKTA A+ LA+ L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 29 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
LL G PG GKT +A +A PF +MAG+E
Sbjct: 43 LLLGPPGCGKTLLAKAVATE--AQVPFLAMAGAEF 75
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 29.6 bits (65), Expect = 0.91, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 18 IKEGKIAGRAIL-LAGQPGTGKTAIAMGLAQALGPD 52
++EG+ + IL + G+ GTGKT + LA AL PD
Sbjct: 370 VEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+K G + +L G PG GKT +A +A + F S+ G E+ ++
Sbjct: 41 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTM 88
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 1 MVGQLQARRAAGVVL---------GMIKEGKIAGRA-ILLAGQPGTGKTAIAMGLAQALG 50
++GQ QA++ V + G G G++ ILL G G+GKT +A LA+ L
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL- 75
Query: 51 PDTPFT 56
D PFT
Sbjct: 76 -DVPFT 80
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 1 MVGQLQARRAAGVVL---------GMIKEGKIAGRA-ILLAGQPGTGKTAIAMGLAQALG 50
++GQ QA++ V + G G G++ ILL G G+GKT +A LA+ L
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL- 75
Query: 51 PDTPFT 56
D PFT
Sbjct: 76 -DVPFT 80
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52
+L A + AG + ++ R I++AG+ G+GKT + L Q + D
Sbjct: 154 ELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT 53
+IK R +LL G+PGTGK+ + +A+ L +T
Sbjct: 52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 29 LLAGQPGTGKTAIAMGLAQAL 49
+L G+PG GKTAI GLAQ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRI 67
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+GQ + ++ V L K K +LL G PG GKT +A +A LG + TS
Sbjct: 15 IGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+GQ + ++ V L K K +LL G PG GKT +A +A LG + TS
Sbjct: 15 IGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From
Plasmodium Vivax
Length = 187
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 29 LLAGQPGTGKTAIAMGLA-QALGPDTPFTSMAGSEIYSL 66
+L G PG GKTAI GLA + + D P S+ G ++ SL
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVP-DSLKGRKLVSL 84
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+GQ + ++ V L K K +LL G PG GKT +A +A LG + TS
Sbjct: 15 IGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
+ ILL G PGTGKT +A +A + F + GSE+
Sbjct: 52 KGILLYGPPGTGKTLLAKAVATET--NATFIRVVGSEL 87
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
Length = 259
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
I+L G PG GK+ + LA+ L + + GS++
Sbjct: 14 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 49
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
I+L G PG GK+ + LA+ L + + GS++
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
IL + PGTGKT +A L + D F + + +I
Sbjct: 51 ILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKI 86
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 13 VVLGMIKEGKIAG-----RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
VV M++ G + ILL G PGTGKT I +A G F S++ S + S
Sbjct: 100 VVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--ATFFSISASSLTS 155
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
R +LL G PGTGKT + +A + F + GSE
Sbjct: 207 RGVLLYGPPGTGKTMLVKAVANSTK--AAFIRVNGSEF 242
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp
Loader Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp
Loader Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp
Loader Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp
Loader Gamma Subunit
Length = 250
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
A G+ LG I A L +G G GKT+IA LA+ L +T T+
Sbjct: 36 ANGLSLGRIHH------AYLFSGTRGVGKTSIARLLAKGLNCETGITA 77
>pdb|2VYE|A Chain A, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYE|B Chain B, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYF|A Chain A, Crystal Structure Of The Dnac
pdb|2VYF|B Chain B, Crystal Structure Of The Dnac
Length = 454
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDT 53
I++A +P GKTA A+ +AQ + T
Sbjct: 206 IIVAARPSVGKTAFALNIAQNVATKT 231
>pdb|2R6A|A Chain A, Crystal Form Bh1
pdb|2R6A|B Chain B, Crystal Form Bh1
pdb|2R6E|A Chain A, Crystal Form B2
pdb|2R6E|B Chain B, Crystal Form B2
pdb|2R6C|A Chain A, Crystal Form Bh2
pdb|2R6C|B Chain B, Crystal Form Bh2
pdb|2R6C|C Chain C, Crystal Form Bh2
pdb|2R6C|D Chain D, Crystal Form Bh2
pdb|2R6C|E Chain E, Crystal Form Bh2
pdb|2R6C|F Chain F, Crystal Form Bh2
pdb|2R6D|A Chain A, Crystal Form B1
pdb|2R6D|B Chain B, Crystal Form B1
pdb|2R6D|C Chain C, Crystal Form B1
pdb|2R6D|D Chain D, Crystal Form B1
pdb|2R6D|E Chain E, Crystal Form B1
pdb|2R6D|F Chain F, Crystal Form B1
pdb|4ESV|A Chain A, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|B Chain B, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|C Chain C, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|D Chain D, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|E Chain E, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|F Chain F, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|G Chain G, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|H Chain H, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|I Chain I, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|J Chain J, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|K Chain K, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|L Chain L, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
Length = 454
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDT 53
I++A +P GKTA A+ +AQ + T
Sbjct: 206 IIVAARPSVGKTAFALNIAQNVATKT 231
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+ +LL G PG GKT +A +A PF + +GS+ +
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSDFVEM 103
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+ +LL G PG GKT +A +A PF + +GS+ +
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSDFVEM 112
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 28 ILLAGQPGTGKTAIAMGLAQAL 49
+L AG PG GKT A+ LA+ L
Sbjct: 49 LLFAGPPGVGKTTAALALAREL 70
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp
From Thermus Thermophilus
Length = 254
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+ +LL G PG GKT +A +A PF + +GS+ +
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGEA--RVPFITASGSDFVEM 88
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 28 ILLAGQPGTGKTAIAMGLAQAL-GPD 52
+L G PGTGKT+ + L + L GPD
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPD 86
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66
+ +LL G PG GKT +A +A PF + +GS+ +
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEA--RVPFITASGSDFVEM 112
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
+ ++L G PGTGKT +A +A F + GSE+
Sbjct: 217 KGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSEL 252
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
A G+ LG I A L +G G GKT+IA LA+ L +T T+
Sbjct: 29 ANGLSLGRIHH------AYLFSGTRGVGKTSIARLLAKGLNCETGITA 70
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
A G+ LG I A L +G G GKT+IA LA+ L +T T+
Sbjct: 29 ANGLSLGRIHH------AYLFSGTRGVGKTSIARLLAKGLNCETGITA 70
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQAL 49
G IL+ G PGTGKT++A +A L
Sbjct: 10 GINILITGTPGTGKTSMAEMIAAEL 34
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
A G+ LG I A L +G G GKT+IA LA+ L +T T+
Sbjct: 51 ANGLSLGRIHH------AYLFSGTRGVGKTSIARLLAKGLNCETGITA 92
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
ILL G PGTGK+ +A +A ++ F S++ S++ S
Sbjct: 54 ILLYGPPGTGKSYLAKAVATE--ANSTFFSVSSSDLVS 89
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
ILL G PGTGK+ +A +A ++ F S++ S++ S
Sbjct: 63 ILLYGPPGTGKSYLAKAVATE--ANSTFFSVSSSDLVS 98
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To
Psi Peptide
Length = 376
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
A G+ LG I A L +G G GKT+IA LA+ L +T T+
Sbjct: 32 ANGLSLGRIHH------AYLFSGTRGVGKTSIARLLAKGLNCETGITA 73
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
ILL G PGTGK+ +A +A ++ F S++ S++ S
Sbjct: 72 ILLYGPPGTGKSYLAKAVATE--ANSTFFSVSSSDLVS 107
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
A G+ LG I A L +G G GKT+IA LA+ L +T T+
Sbjct: 51 ANGLSLGRIHH------AYLFSGTRGVGKTSIARLLAKGLNCETGITA 92
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+LLAG PG GKT +A +A L + TS
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+LLAG PG GKT +A +A L + TS
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
ILL G PGTGK+ +A +A ++ F S++ S++ S
Sbjct: 87 ILLYGPPGTGKSYLAKAVATE--ANSTFFSVSSSDLVS 122
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+LLAG PG GKT +A +A L + TS
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+LLAG PG GKT +A +A L + TS
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49
V + EGK+ +L G PGTGKT+ + LA+ +
Sbjct: 37 VRKFVDEGKLPH--LLFYGPPGTGKTSTIVALAREI 70
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+LLAG PG GKT +A +A L + TS
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQAL 49
G + L G PG+GKT IA LA L
Sbjct: 13 GIVVWLTGLPGSGKTTIATRLADLL 37
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS 61
+G L VL I G + + G G GKT + LA PD+ S++G
Sbjct: 7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66
Query: 62 EIYS 65
I+S
Sbjct: 67 TIFS 70
>pdb|3R20|A Chain A, Crystal Structure Of Cytidylate Kinase From
Mycobacterium Smegmatis
Length = 233
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
+ + G GTGK++++ GLA+ALG
Sbjct: 12 VAVDGPAGTGKSSVSRGLARALG 34
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 27 AILLAGQPGTGKTAI 41
A LL GQPG+GKT++
Sbjct: 35 AFLLGGQPGSGKTSL 49
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I++ G+PG GKT + + + LG
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+LLAG PG G+T +A +A L + TS
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTS 83
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQALG 50
+ GR++ L G G+GKT + +A++LG
Sbjct: 46 LNGRSMYLVGMMGSGKTTVGKIMARSLG 73
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQALG 50
G+A++ G PG GK A LAQ LG
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELG 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,378,476
Number of Sequences: 62578
Number of extensions: 152555
Number of successful extensions: 736
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 109
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)