Query psy14616
Match_columns 174
No_of_seqs 121 out of 1292
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 16:17:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0466 Lon ATP-dependent Lon 99.9 4.7E-25 1E-29 179.3 12.4 155 2-169 326-516 (782)
2 COG1223 Predicted ATPase (AAA+ 99.9 3.6E-25 7.8E-30 161.8 6.5 156 1-163 123-299 (368)
3 COG2256 MGS1 ATPase related to 99.9 3.4E-24 7.5E-29 164.7 11.3 150 1-165 26-180 (436)
4 KOG2004|consensus 99.9 2.5E-24 5.5E-29 174.8 10.0 155 2-169 414-604 (906)
5 PF05496 RuvB_N: Holliday junc 99.9 9.6E-22 2.1E-26 142.1 9.1 151 1-160 26-191 (233)
6 COG1222 RPT1 ATP-dependent 26S 99.9 6.1E-22 1.3E-26 150.4 7.4 145 20-169 180-343 (406)
7 KOG0730|consensus 99.9 6.4E-22 1.4E-26 159.8 7.1 160 3-167 438-621 (693)
8 COG1224 TIP49 DNA helicase TIP 99.9 1.1E-20 2.3E-25 143.6 12.7 72 1-72 41-112 (450)
9 PF06068 TIP49: TIP49 C-termin 99.8 1.1E-20 2.3E-25 145.0 10.3 72 1-72 26-97 (398)
10 COG2255 RuvB Holliday junction 99.8 3.5E-20 7.6E-25 137.1 12.4 151 1-161 28-194 (332)
11 TIGR00763 lon ATP-dependent pr 99.8 1.1E-19 2.4E-24 154.6 14.2 162 1-167 322-511 (775)
12 PRK10787 DNA-binding ATP-depen 99.8 2.5E-19 5.4E-24 151.8 15.6 163 1-169 324-514 (784)
13 CHL00195 ycf46 Ycf46; Provisio 99.8 1.1E-19 2.5E-24 146.5 10.1 160 1-164 230-408 (489)
14 KOG0734|consensus 99.8 8.1E-20 1.8E-24 144.9 6.0 162 1-168 306-491 (752)
15 KOG0733|consensus 99.8 3.8E-19 8.3E-24 142.9 9.7 155 3-162 515-693 (802)
16 PRK14956 DNA polymerase III su 99.8 3.3E-19 7.1E-24 142.4 8.1 148 1-164 20-196 (484)
17 KOG2028|consensus 99.8 1E-18 2.2E-23 133.6 10.2 149 1-162 140-295 (554)
18 KOG0733|consensus 99.8 1.1E-18 2.3E-23 140.4 10.3 155 3-162 194-375 (802)
19 PRK07994 DNA polymerase III su 99.8 7.4E-19 1.6E-23 145.2 8.4 147 1-164 18-194 (647)
20 PRK12323 DNA polymerase III su 99.8 4.6E-19 9.9E-24 145.2 7.0 147 1-164 18-199 (700)
21 KOG0989|consensus 99.8 4.8E-19 1E-23 132.2 6.5 147 1-165 38-205 (346)
22 TIGR01241 FtsH_fam ATP-depende 99.8 1.5E-18 3.2E-23 141.5 10.0 159 1-164 57-241 (495)
23 PRK14949 DNA polymerase III su 99.8 8.9E-19 1.9E-23 147.5 8.7 146 1-163 18-193 (944)
24 PRK07003 DNA polymerase III su 99.8 4.4E-19 9.5E-24 147.1 6.7 147 1-164 18-194 (830)
25 KOG0731|consensus 99.8 1E-18 2.2E-23 144.7 8.1 161 1-166 313-500 (774)
26 KOG0738|consensus 99.8 5.7E-19 1.2E-23 135.5 6.1 161 1-165 214-399 (491)
27 TIGR03689 pup_AAA proteasome A 99.8 2.9E-18 6.3E-23 138.5 10.3 160 1-163 184-380 (512)
28 TIGR02881 spore_V_K stage V sp 99.8 2.4E-18 5.2E-23 129.7 8.1 161 1-163 8-193 (261)
29 KOG0739|consensus 99.8 1.4E-18 3E-23 129.7 6.3 158 1-163 135-314 (439)
30 TIGR01243 CDC48 AAA family ATP 99.8 6E-18 1.3E-22 143.6 10.7 159 1-164 455-638 (733)
31 PRK14961 DNA polymerase III su 99.7 4.7E-18 1E-22 133.6 9.1 148 1-164 18-194 (363)
32 COG0464 SpoVK ATPases of the A 99.7 7E-18 1.5E-22 137.7 9.9 158 2-164 245-426 (494)
33 PRK14958 DNA polymerase III su 99.7 1.8E-18 4E-23 140.6 6.3 148 1-165 18-195 (509)
34 PRK03992 proteasome-activating 99.7 8.6E-18 1.9E-22 133.2 9.8 160 1-165 133-319 (389)
35 PRK07940 DNA polymerase III su 99.7 4.9E-18 1.1E-22 134.1 8.3 144 1-159 7-187 (394)
36 TIGR00635 ruvB Holliday juncti 99.7 2.8E-17 6.2E-22 126.4 12.4 155 1-162 6-173 (305)
37 PRK14962 DNA polymerase III su 99.7 8.3E-18 1.8E-22 135.6 9.1 147 1-163 16-191 (472)
38 PRK14951 DNA polymerase III su 99.7 7.8E-18 1.7E-22 138.9 9.0 147 1-164 18-199 (618)
39 CHL00181 cbbX CbbX; Provisiona 99.7 7.9E-18 1.7E-22 128.2 7.9 161 1-164 25-212 (287)
40 KOG1942|consensus 99.7 5.9E-17 1.3E-21 120.9 12.2 72 1-72 40-111 (456)
41 KOG2680|consensus 99.7 3.5E-17 7.6E-22 122.3 10.8 92 1-92 42-148 (454)
42 PTZ00454 26S protease regulato 99.7 1.7E-17 3.8E-22 131.2 9.8 160 1-165 147-333 (398)
43 PRK14960 DNA polymerase III su 99.7 6.4E-18 1.4E-22 138.8 7.5 147 1-164 17-193 (702)
44 KOG0736|consensus 99.7 1.1E-17 2.4E-22 137.4 8.8 156 3-162 676-858 (953)
45 PRK00080 ruvB Holliday junctio 99.7 5.4E-17 1.2E-21 126.1 12.0 154 1-162 27-194 (328)
46 COG2812 DnaX DNA polymerase II 99.7 5.3E-18 1.1E-22 136.4 5.9 151 1-165 18-195 (515)
47 PLN03025 replication factor C 99.7 1.1E-17 2.5E-22 129.4 7.5 146 1-164 15-174 (319)
48 PRK13342 recombination factor 99.7 1.3E-17 2.9E-22 133.1 7.9 147 1-163 14-166 (413)
49 PRK14952 DNA polymerase III su 99.7 1.6E-17 3.4E-22 136.6 8.3 147 1-164 15-193 (584)
50 PRK07764 DNA polymerase III su 99.7 1.8E-17 3.9E-22 140.7 8.6 147 1-164 17-195 (824)
51 KOG0742|consensus 99.7 1.2E-17 2.6E-22 129.3 6.8 155 7-165 363-532 (630)
52 PRK14957 DNA polymerase III su 99.7 2.2E-17 4.7E-22 134.7 8.5 147 1-164 18-194 (546)
53 KOG0737|consensus 99.7 8.2E-18 1.8E-22 128.4 5.6 161 3-167 96-280 (386)
54 PRK14964 DNA polymerase III su 99.7 9E-18 2E-22 135.2 5.8 147 1-164 15-191 (491)
55 CHL00176 ftsH cell division pr 99.7 3.5E-17 7.6E-22 135.9 9.2 159 1-164 185-369 (638)
56 TIGR02880 cbbX_cfxQ probable R 99.7 2.4E-17 5.3E-22 125.5 7.4 157 1-164 24-211 (284)
57 PRK14969 DNA polymerase III su 99.7 2.2E-17 4.7E-22 135.0 7.1 147 1-164 18-194 (527)
58 PRK05563 DNA polymerase III su 99.7 9.1E-17 2E-21 132.3 10.8 147 1-164 18-194 (559)
59 PRK06645 DNA polymerase III su 99.7 4.1E-17 8.9E-22 132.2 8.5 149 1-165 23-204 (507)
60 PRK07133 DNA polymerase III su 99.7 7.2E-17 1.6E-21 134.4 9.9 147 1-164 20-193 (725)
61 PLN00020 ribulose bisphosphate 99.7 4.4E-17 9.5E-22 125.7 7.7 139 22-165 145-315 (413)
62 PRK05896 DNA polymerase III su 99.7 7.6E-17 1.6E-21 132.0 9.0 147 1-164 18-194 (605)
63 PRK14965 DNA polymerase III su 99.7 2.7E-17 5.9E-22 135.8 6.1 147 1-164 18-194 (576)
64 PRK08691 DNA polymerase III su 99.7 5.5E-17 1.2E-21 134.2 7.3 148 1-165 18-195 (709)
65 KOG0991|consensus 99.7 5.1E-17 1.1E-21 117.6 5.9 144 1-161 29-185 (333)
66 PTZ00361 26 proteosome regulat 99.7 6.7E-17 1.4E-21 128.9 6.8 160 1-165 185-371 (438)
67 PRK14963 DNA polymerase III su 99.7 3.2E-16 7E-21 127.4 10.5 148 1-165 16-192 (504)
68 PRK06647 DNA polymerase III su 99.7 1.9E-16 4.2E-21 130.1 9.0 147 1-163 18-193 (563)
69 COG0465 HflB ATP-dependent Zn 99.7 1.4E-16 3.1E-21 129.7 7.8 163 1-168 152-340 (596)
70 PRK09111 DNA polymerase III su 99.7 1.8E-16 4E-21 130.8 8.4 148 1-164 26-207 (598)
71 TIGR01242 26Sp45 26S proteasom 99.7 3E-16 6.4E-21 123.6 9.0 160 1-165 124-310 (364)
72 PRK14959 DNA polymerase III su 99.7 1.4E-16 3.1E-21 130.9 7.3 147 1-164 18-194 (624)
73 PRK14954 DNA polymerase III su 99.7 2.5E-16 5.4E-21 130.3 8.4 146 1-163 18-201 (620)
74 PRK13341 recombination factor 99.7 3.7E-16 8E-21 131.4 9.5 146 1-162 30-182 (725)
75 PRK08451 DNA polymerase III su 99.7 3.8E-16 8.3E-21 126.9 8.9 148 1-164 16-192 (535)
76 PRK14955 DNA polymerase III su 99.7 2.5E-16 5.5E-21 125.2 7.6 147 1-163 18-201 (397)
77 PRK06305 DNA polymerase III su 99.6 9.4E-16 2E-20 123.4 9.8 146 1-163 19-195 (451)
78 PRK07399 DNA polymerase III su 99.6 8.9E-16 1.9E-20 118.3 8.9 146 1-162 6-196 (314)
79 PRK04195 replication factor C 99.6 2.3E-15 5E-20 122.5 11.4 152 1-164 16-176 (482)
80 TIGR02397 dnaX_nterm DNA polym 99.6 1.3E-15 2.9E-20 119.4 9.4 148 1-164 16-192 (355)
81 PRK14953 DNA polymerase III su 99.6 1.7E-15 3.7E-20 122.7 9.8 147 1-164 18-194 (486)
82 KOG0728|consensus 99.6 9.2E-16 2E-20 112.4 6.6 139 21-164 177-334 (404)
83 PRK14948 DNA polymerase III su 99.6 3.2E-15 6.9E-20 124.2 10.4 146 1-163 18-195 (620)
84 COG0542 clpA ATP-binding subun 99.6 1.7E-15 3.6E-20 126.5 8.7 162 1-163 493-707 (786)
85 PRK14970 DNA polymerase III su 99.6 4E-15 8.7E-20 117.3 10.2 148 1-164 19-183 (367)
86 PRK14971 DNA polymerase III su 99.6 3.8E-15 8.3E-20 123.7 10.5 147 1-164 19-196 (614)
87 PRK05564 DNA polymerase III su 99.6 2E-15 4.4E-20 116.6 8.2 143 1-161 6-165 (313)
88 PRK07471 DNA polymerase III su 99.6 2.8E-15 6E-20 117.6 9.0 48 1-52 21-68 (365)
89 KOG0740|consensus 99.6 1.5E-15 3.3E-20 119.3 7.1 160 1-164 155-336 (428)
90 TIGR02639 ClpA ATP-dependent C 99.6 7E-15 1.5E-19 124.9 10.9 154 1-163 456-664 (731)
91 TIGR01243 CDC48 AAA family ATP 99.6 7.5E-15 1.6E-19 124.9 10.7 157 1-162 180-360 (733)
92 PRK08058 DNA polymerase III su 99.6 2.3E-15 5E-20 116.9 6.7 143 1-160 7-181 (329)
93 CHL00206 ycf2 Ycf2; Provisiona 99.6 2.5E-15 5.5E-20 133.5 7.5 133 20-158 1625-1814(2281)
94 PRK14950 DNA polymerase III su 99.6 7.8E-15 1.7E-19 121.7 9.8 147 1-163 18-194 (585)
95 KOG0652|consensus 99.6 4.1E-15 8.9E-20 109.6 7.0 143 20-167 200-361 (424)
96 PRK11034 clpA ATP-dependent Cl 99.6 7.1E-15 1.5E-19 124.2 9.4 154 1-163 460-668 (758)
97 PRK10733 hflB ATP-dependent me 99.6 6.8E-15 1.5E-19 123.2 9.1 159 1-164 154-338 (644)
98 KOG0727|consensus 99.6 8.7E-16 1.9E-20 112.7 3.3 138 21-163 185-341 (408)
99 TIGR02639 ClpA ATP-dependent C 99.6 5.8E-15 1.3E-19 125.4 8.4 155 1-163 184-360 (731)
100 TIGR02902 spore_lonB ATP-depen 99.6 6.5E-15 1.4E-19 120.8 8.3 156 1-165 67-280 (531)
101 PRK09112 DNA polymerase III su 99.6 9.5E-15 2.1E-19 114.1 8.1 143 1-160 25-212 (351)
102 PHA02544 44 clamp loader, smal 99.6 2E-14 4.4E-19 111.1 9.7 144 1-160 23-172 (316)
103 PRK12402 replication factor C 99.6 2E-14 4.4E-19 111.9 9.7 146 1-164 17-200 (337)
104 TIGR03345 VI_ClpV1 type VI sec 99.6 1.7E-14 3.7E-19 123.8 9.8 152 1-161 189-363 (852)
105 KOG0744|consensus 99.6 4.1E-15 9E-20 112.2 4.8 141 25-168 177-347 (423)
106 PRK05707 DNA polymerase III su 99.5 6.6E-15 1.4E-19 114.0 5.9 134 14-161 12-178 (328)
107 KOG0735|consensus 99.5 2.6E-14 5.7E-19 117.1 9.5 156 2-162 670-849 (952)
108 TIGR03345 VI_ClpV1 type VI sec 99.5 7E-14 1.5E-18 120.1 12.0 156 1-163 568-782 (852)
109 TIGR00678 holB DNA polymerase 99.5 2.4E-14 5.2E-19 102.9 6.9 136 13-160 3-167 (188)
110 PF13177 DNA_pol3_delta2: DNA 99.5 5.8E-15 1.2E-19 103.7 3.3 46 3-52 1-46 (162)
111 CHL00095 clpC Clp protease ATP 99.5 5.2E-14 1.1E-18 120.9 9.7 158 1-163 511-734 (821)
112 PRK06871 DNA polymerase III su 99.5 3.4E-14 7.4E-19 109.6 7.1 138 10-161 10-179 (325)
113 KOG0726|consensus 99.5 4.9E-15 1.1E-19 110.6 1.3 146 21-171 215-379 (440)
114 TIGR00390 hslU ATP-dependent p 99.5 4E-13 8.8E-18 105.8 11.9 57 1-59 14-79 (441)
115 PF00004 AAA: ATPase family as 99.5 1.2E-14 2.5E-19 98.3 2.8 114 28-146 1-131 (132)
116 PRK05201 hslU ATP-dependent pr 99.5 4.4E-13 9.6E-18 105.6 12.0 57 1-59 17-82 (443)
117 PRK05342 clpX ATP-dependent pr 99.5 1.2E-13 2.6E-18 109.9 8.8 89 1-91 73-186 (412)
118 KOG0743|consensus 99.5 2.7E-13 5.9E-18 106.4 10.5 134 21-164 231-386 (457)
119 TIGR00382 clpX endopeptidase C 99.5 1.4E-13 2.9E-18 109.2 8.8 89 1-91 79-194 (413)
120 PRK00440 rfc replication facto 99.5 3E-13 6.4E-18 104.6 10.6 146 1-164 19-177 (319)
121 TIGR02903 spore_lon_C ATP-depe 99.5 4.2E-13 9.2E-18 111.8 11.4 157 1-163 156-368 (615)
122 PRK07993 DNA polymerase III su 99.5 7.4E-14 1.6E-18 108.5 5.8 137 10-160 10-179 (334)
123 COG1220 HslU ATP-dependent pro 99.5 6.1E-13 1.3E-17 101.2 10.3 57 1-59 17-82 (444)
124 TIGR02640 gas_vesic_GvpN gas v 99.5 6.8E-13 1.5E-17 100.1 10.6 147 7-161 7-198 (262)
125 PRK06893 DNA replication initi 99.5 1.8E-13 3.9E-18 101.4 7.2 128 26-164 40-177 (229)
126 PRK08084 DNA replication initi 99.5 1.8E-13 4E-18 101.6 7.0 126 26-164 46-183 (235)
127 KOG0729|consensus 99.5 4.8E-14 1E-18 104.4 3.8 136 17-157 203-357 (435)
128 PRK10865 protein disaggregatio 99.4 5.1E-13 1.1E-17 115.0 9.7 157 1-163 570-781 (857)
129 TIGR03346 chaperone_ClpB ATP-d 99.4 8.6E-13 1.9E-17 113.8 10.9 156 1-163 567-778 (852)
130 COG0470 HolB ATPase involved i 99.4 2.6E-13 5.6E-18 105.1 7.0 143 1-158 3-178 (325)
131 PRK08769 DNA polymerase III su 99.4 1.9E-13 4.1E-18 105.2 5.9 133 11-160 13-184 (319)
132 PRK10865 protein disaggregatio 99.4 6.3E-13 1.4E-17 114.5 9.6 152 1-161 180-354 (857)
133 KOG0732|consensus 99.4 4.8E-13 1E-17 114.3 8.0 160 3-165 269-455 (1080)
134 PRK06964 DNA polymerase III su 99.4 5.3E-13 1.1E-17 103.7 7.3 38 122-160 166-203 (342)
135 PRK06090 DNA polymerase III su 99.4 4.7E-13 1E-17 103.0 7.0 135 11-160 12-179 (319)
136 KOG0651|consensus 99.4 9.4E-14 2E-18 104.4 1.1 127 21-152 162-307 (388)
137 CHL00095 clpC Clp protease ATP 99.4 1.4E-12 3.1E-17 112.1 8.3 152 1-161 181-354 (821)
138 PRK11034 clpA ATP-dependent Cl 99.4 1.1E-12 2.4E-17 111.1 7.4 154 1-162 188-363 (758)
139 KOG0741|consensus 99.4 1E-13 2.2E-18 110.6 0.6 135 23-161 254-414 (744)
140 COG1219 ClpX ATP-dependent pro 99.3 3.5E-12 7.6E-17 96.4 7.9 89 1-91 63-175 (408)
141 COG0714 MoxR-like ATPases [Gen 99.3 1.8E-11 4E-16 95.3 11.6 144 1-160 26-202 (329)
142 TIGR03346 chaperone_ClpB ATP-d 99.3 2.3E-12 4.9E-17 111.2 7.0 152 1-161 175-349 (852)
143 TIGR02928 orc1/cdc6 family rep 99.3 8.7E-12 1.9E-16 98.2 9.6 155 1-162 17-213 (365)
144 KOG0730|consensus 99.3 1.2E-12 2.6E-17 106.7 4.1 142 20-166 213-369 (693)
145 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.2E-16 94.5 9.9 133 23-161 62-233 (327)
146 PRK08727 hypothetical protein; 99.3 1.6E-11 3.4E-16 91.2 9.4 127 26-163 42-177 (233)
147 PRK13407 bchI magnesium chelat 99.3 2.7E-11 5.8E-16 94.0 10.8 45 1-50 10-54 (334)
148 PTZ00112 origin recognition co 99.3 2E-11 4.3E-16 103.2 10.5 157 1-163 757-951 (1164)
149 PRK00411 cdc6 cell division co 99.3 3.3E-11 7.1E-16 95.9 9.5 155 1-162 32-221 (394)
150 PRK06620 hypothetical protein; 99.3 3E-11 6.4E-16 88.6 8.2 115 26-164 45-163 (214)
151 PRK13531 regulatory ATPase Rav 99.3 2E-11 4.3E-16 98.0 7.7 144 1-160 22-193 (498)
152 COG0542 clpA ATP-binding subun 99.2 2.9E-11 6.3E-16 101.5 8.5 150 1-160 172-345 (786)
153 PRK07276 DNA polymerase III su 99.2 2E-11 4.2E-16 92.8 6.7 137 4-160 7-174 (290)
154 PRK08699 DNA polymerase III su 99.2 2E-11 4.4E-16 94.6 6.9 38 122-160 147-184 (325)
155 TIGR00362 DnaA chromosomal rep 99.2 4.1E-11 8.9E-16 95.8 8.8 146 12-164 123-284 (405)
156 PRK05642 DNA replication initi 99.2 8.1E-11 1.8E-15 87.5 9.8 126 26-163 46-181 (234)
157 PRK08903 DnaA regulatory inact 99.2 7E-11 1.5E-15 87.3 9.3 123 24-161 41-170 (227)
158 PRK11331 5-methylcytosine-spec 99.2 6.2E-11 1.3E-15 94.5 9.5 27 25-51 194-220 (459)
159 PRK00149 dnaA chromosomal repl 99.2 2.6E-11 5.5E-16 98.2 7.5 145 12-163 135-295 (450)
160 PHA02244 ATPase-like protein 99.2 3.2E-11 6.9E-16 93.9 7.2 129 12-153 110-266 (383)
161 KOG2035|consensus 99.2 3.8E-11 8.2E-16 89.3 6.9 41 124-164 162-202 (351)
162 PF00308 Bac_DnaA: Bacterial d 99.2 7.2E-11 1.6E-15 86.9 8.4 133 26-165 35-183 (219)
163 PF07728 AAA_5: AAA domain (dy 99.2 7E-12 1.5E-16 85.8 2.5 33 27-59 1-33 (139)
164 TIGR03420 DnaA_homol_Hda DnaA 99.2 8.6E-11 1.9E-15 86.6 7.6 145 4-162 22-173 (226)
165 PF05673 DUF815: Protein of un 99.2 3.3E-10 7.2E-15 83.4 9.9 153 1-162 29-208 (249)
166 PRK05917 DNA polymerase III su 99.2 9.9E-11 2.1E-15 88.8 7.3 41 11-52 6-46 (290)
167 PRK14088 dnaA chromosomal repl 99.2 5.7E-11 1.2E-15 95.7 6.4 131 26-163 131-278 (440)
168 PF07726 AAA_3: ATPase family 99.2 4.3E-12 9.3E-17 84.5 -0.3 107 27-141 1-130 (131)
169 PRK07132 DNA polymerase III su 99.2 3.2E-10 7E-15 86.8 9.8 137 11-160 5-161 (299)
170 PRK14087 dnaA chromosomal repl 99.1 3.9E-10 8.5E-15 91.1 9.7 146 12-164 128-291 (450)
171 PRK14086 dnaA chromosomal repl 99.1 2E-10 4.4E-15 94.7 8.1 132 26-164 315-462 (617)
172 TIGR00602 rad24 checkpoint pro 99.1 1.7E-10 3.6E-15 96.1 7.6 52 1-52 86-137 (637)
173 CHL00081 chlI Mg-protoporyphyr 99.1 1.8E-10 3.9E-15 89.7 6.6 45 1-50 19-63 (350)
174 PRK12422 chromosomal replicati 99.1 3E-10 6.5E-15 91.6 7.6 132 26-164 142-287 (445)
175 PRK09087 hypothetical protein; 99.1 2.7E-10 5.8E-15 84.2 6.7 119 26-164 45-169 (226)
176 COG1474 CDC6 Cdc6-related prot 99.1 7.9E-10 1.7E-14 87.0 9.4 150 3-163 21-205 (366)
177 PRK04132 replication factor C 99.1 1.4E-10 3E-15 99.0 5.0 126 25-163 564-704 (846)
178 KOG0990|consensus 99.1 4.4E-11 9.6E-16 90.4 1.2 146 1-164 43-206 (360)
179 cd00009 AAA The AAA+ (ATPases 99.0 5.3E-10 1.1E-14 76.0 6.2 56 2-62 1-57 (151)
180 PF01078 Mg_chelatase: Magnesi 99.0 3.1E-10 6.8E-15 81.8 5.0 42 1-49 5-46 (206)
181 smart00350 MCM minichromosome 99.0 2.4E-09 5.1E-14 88.0 10.5 48 1-51 205-262 (509)
182 TIGR02442 Cob-chelat-sub cobal 99.0 2.8E-09 6E-14 89.6 11.0 44 1-49 6-49 (633)
183 TIGR02030 BchI-ChlI magnesium 99.0 9.2E-10 2E-14 85.6 6.1 44 1-49 6-49 (337)
184 COG0593 DnaA ATPase involved i 99.0 3.7E-09 8E-14 83.6 8.7 128 24-162 112-258 (408)
185 KOG0736|consensus 98.9 2.6E-09 5.6E-14 89.0 6.1 137 26-167 432-582 (953)
186 PF06309 Torsin: Torsin; Inte 98.9 8.8E-09 1.9E-13 68.5 7.2 49 1-49 27-77 (127)
187 PRK05818 DNA polymerase III su 98.9 3.5E-09 7.7E-14 79.0 5.1 29 24-52 6-34 (261)
188 smart00763 AAA_PrkA PrkA AAA d 98.8 8.6E-09 1.9E-13 80.3 6.6 51 1-51 53-104 (361)
189 KOG1051|consensus 98.8 2.3E-08 5.1E-13 85.4 9.6 62 1-62 564-629 (898)
190 COG0606 Predicted ATPase with 98.8 2.9E-09 6.3E-14 84.7 3.8 42 1-49 181-222 (490)
191 PHA00729 NTP-binding motif con 98.8 4.5E-08 9.8E-13 71.8 9.0 31 130-160 109-139 (226)
192 KOG1969|consensus 98.8 4.3E-08 9.3E-13 81.5 9.4 134 21-159 322-479 (877)
193 PF07724 AAA_2: AAA domain (Cd 98.8 1.1E-08 2.3E-13 72.5 5.2 98 25-125 3-127 (171)
194 KOG0735|consensus 98.7 3.1E-08 6.8E-13 82.2 7.5 140 25-165 431-590 (952)
195 COG2607 Predicted ATPase (AAA+ 98.7 1.4E-07 3E-12 69.2 10.0 152 1-163 62-241 (287)
196 TIGR00368 Mg chelatase-related 98.7 4.2E-08 9E-13 80.2 7.7 42 1-49 194-235 (499)
197 TIGR02974 phageshock_pspF psp 98.7 2E-08 4.3E-13 78.2 5.1 156 1-163 1-189 (329)
198 TIGR01817 nifA Nif-specific re 98.7 3.2E-08 6.8E-13 81.9 6.4 156 1-163 198-386 (534)
199 COG1239 ChlI Mg-chelatase subu 98.7 5.9E-08 1.3E-12 76.3 7.1 45 1-50 19-63 (423)
200 PTZ00111 DNA replication licen 98.7 1.8E-07 4E-12 80.2 10.1 24 27-50 494-517 (915)
201 KOG2227|consensus 98.7 1.7E-07 3.8E-12 74.5 9.0 160 1-166 152-343 (529)
202 PRK11608 pspF phage shock prot 98.6 6.3E-08 1.4E-12 75.4 6.1 155 1-163 8-196 (326)
203 PRK15455 PrkA family serine pr 98.6 1.1E-07 2.4E-12 78.1 6.2 50 1-50 78-128 (644)
204 PRK12377 putative replication 98.6 1.6E-07 3.5E-12 70.2 6.6 45 3-50 82-126 (248)
205 TIGR02031 BchD-ChlD magnesium 98.6 5.9E-07 1.3E-11 75.1 10.1 132 26-161 17-174 (589)
206 PRK05022 anaerobic nitric oxid 98.6 2.2E-07 4.8E-12 76.5 7.3 156 1-163 189-377 (509)
207 PRK15429 formate hydrogenlyase 98.5 2.7E-07 5.8E-12 78.6 7.8 156 1-163 378-566 (686)
208 PF12775 AAA_7: P-loop contain 98.5 1.4E-06 3E-11 66.2 10.9 134 25-162 33-194 (272)
209 COG1221 PspF Transcriptional r 98.5 1E-07 2.2E-12 75.3 4.8 136 25-164 101-267 (403)
210 TIGR00764 lon_rel lon-related 98.5 2.4E-07 5.1E-12 77.6 6.8 45 1-52 20-64 (608)
211 PRK15424 propionate catabolism 98.5 2.6E-07 5.6E-12 76.2 6.6 156 1-163 221-418 (538)
212 PRK09862 putative ATP-dependen 98.5 2.8E-07 6E-12 75.3 6.8 42 1-49 193-234 (506)
213 PF00158 Sigma54_activat: Sigm 98.5 3.5E-07 7.7E-12 64.6 6.4 62 1-65 1-63 (168)
214 PRK08116 hypothetical protein; 98.5 3.1E-07 6.7E-12 69.6 6.4 58 7-64 96-154 (268)
215 PRK06835 DNA replication prote 98.5 3.3E-07 7.2E-12 71.3 6.5 57 8-64 166-223 (329)
216 smart00382 AAA ATPases associa 98.5 2E-07 4.4E-12 62.6 4.7 37 25-61 2-39 (148)
217 KOG0745|consensus 98.5 1.6E-07 3.5E-12 74.1 4.6 64 26-91 227-304 (564)
218 COG1241 MCM2 Predicted ATPase 98.5 4.8E-07 1E-11 75.8 7.1 155 1-160 288-482 (682)
219 COG1484 DnaC DNA replication p 98.5 3.6E-07 7.8E-12 68.7 5.7 40 25-64 105-145 (254)
220 PF13207 AAA_17: AAA domain; P 98.5 2.3E-07 5.1E-12 61.6 4.1 23 28-50 2-24 (121)
221 PF03215 Rad17: Rad17 cell cyc 98.4 5.4E-07 1.2E-11 74.0 6.3 32 21-52 41-72 (519)
222 PF13191 AAA_16: AAA ATPase do 98.4 2.9E-07 6.2E-12 65.5 4.2 47 1-49 2-48 (185)
223 PF14532 Sigma54_activ_2: Sigm 98.4 1E-07 2.2E-12 65.2 1.8 80 2-90 1-81 (138)
224 PRK08939 primosomal protein Dn 98.4 6.3E-07 1.4E-11 69.1 6.3 25 25-49 156-180 (306)
225 PRK11388 DNA-binding transcrip 98.4 6.1E-07 1.3E-11 75.9 6.7 135 25-163 348-512 (638)
226 PRK10820 DNA-binding transcrip 98.4 1.2E-06 2.5E-11 72.4 8.0 135 25-163 227-394 (520)
227 PRK07952 DNA replication prote 98.4 8.6E-07 1.9E-11 66.2 6.2 39 26-64 100-139 (244)
228 TIGR02329 propionate_PrpR prop 98.4 1E-06 2.2E-11 72.7 7.0 156 1-163 214-403 (526)
229 PRK08181 transposase; Validate 98.4 8.9E-07 1.9E-11 67.0 6.2 25 25-49 106-130 (269)
230 PRK13765 ATP-dependent proteas 98.4 6.6E-07 1.4E-11 75.1 5.8 45 1-52 33-77 (637)
231 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.6E-11 59.0 6.1 115 26-153 3-127 (128)
232 PF05621 TniB: Bacterial TniB 98.4 4.5E-07 9.7E-12 69.0 4.4 48 2-49 37-85 (302)
233 KOG1514|consensus 98.3 1.2E-06 2.6E-11 72.8 6.4 154 6-164 403-592 (767)
234 PRK00131 aroK shikimate kinase 98.3 1.2E-06 2.5E-11 61.8 4.7 27 25-51 4-30 (175)
235 PRK06921 hypothetical protein; 98.3 1.8E-06 3.9E-11 65.4 5.8 26 25-50 117-142 (266)
236 KOG0480|consensus 98.3 4.5E-06 9.7E-11 68.8 8.4 157 1-162 347-543 (764)
237 PRK06581 DNA polymerase III su 98.3 4.3E-06 9.3E-11 61.8 7.4 139 11-163 2-163 (263)
238 TIGR00150 HI0065_YjeE ATPase, 98.3 3E-06 6.5E-11 57.3 6.1 30 23-52 20-49 (133)
239 PF01695 IstB_IS21: IstB-like 98.3 8.2E-07 1.8E-11 63.3 3.5 25 25-49 47-71 (178)
240 COG5271 MDN1 AAA ATPase contai 98.3 3.9E-06 8.4E-11 75.9 8.0 131 25-161 1543-1703(4600)
241 PRK08118 topology modulation p 98.2 1.4E-06 3E-11 61.6 4.3 27 26-52 2-28 (167)
242 PF13671 AAA_33: AAA domain; P 98.2 9.4E-07 2E-11 60.3 3.4 23 28-50 2-24 (143)
243 PRK06526 transposase; Provisio 98.2 1.1E-06 2.3E-11 66.2 3.6 25 25-49 98-122 (254)
244 KOG0478|consensus 98.2 2.5E-06 5.4E-11 70.8 5.8 52 1-52 431-489 (804)
245 PRK14532 adenylate kinase; Pro 98.2 1.5E-06 3.2E-11 62.4 4.1 36 27-66 2-37 (188)
246 TIGR01359 UMP_CMP_kin_fam UMP- 98.2 1.4E-06 3.1E-11 62.1 4.0 34 28-65 2-35 (183)
247 PRK14531 adenylate kinase; Pro 98.2 1.7E-06 3.7E-11 61.9 4.2 36 26-65 3-38 (183)
248 PRK10923 glnG nitrogen regulat 98.2 5.4E-06 1.2E-10 67.6 7.4 135 25-163 161-328 (469)
249 KOG3347|consensus 98.2 1.9E-06 4.1E-11 58.9 3.7 26 26-51 8-33 (176)
250 PRK00625 shikimate kinase; Pro 98.2 2.3E-06 4.9E-11 60.8 4.3 26 27-52 2-27 (173)
251 PRK03839 putative kinase; Prov 98.2 2.3E-06 5.1E-11 60.9 4.2 25 27-51 2-26 (180)
252 PRK13947 shikimate kinase; Pro 98.2 2.6E-06 5.6E-11 60.1 4.4 27 26-52 2-28 (171)
253 PF00910 RNA_helicase: RNA hel 98.1 1.8E-06 3.8E-11 56.4 2.9 23 28-50 1-23 (107)
254 COG1102 Cmk Cytidylate kinase 98.1 2.2E-06 4.8E-11 59.3 3.2 34 27-64 2-35 (179)
255 TIGR02915 PEP_resp_reg putativ 98.1 7E-06 1.5E-10 66.5 6.6 134 25-163 162-329 (445)
256 PRK14530 adenylate kinase; Pro 98.1 3.3E-06 7.1E-11 62.0 4.2 26 26-51 4-29 (215)
257 KOG1970|consensus 98.1 5.3E-06 1.1E-10 67.4 5.3 33 20-52 105-137 (634)
258 KOG0741|consensus 98.1 2.9E-06 6.3E-11 68.8 3.6 37 21-59 534-570 (744)
259 COG0703 AroK Shikimate kinase 98.1 3.7E-06 8.1E-11 59.1 3.8 27 26-52 3-29 (172)
260 PLN02674 adenylate kinase 98.1 9.7E-06 2.1E-10 60.5 6.2 39 25-67 31-69 (244)
261 PRK13949 shikimate kinase; Pro 98.1 4.6E-06 1E-10 59.0 4.2 27 26-52 2-28 (169)
262 PF13238 AAA_18: AAA domain; P 98.1 3.5E-06 7.6E-11 56.2 3.4 22 28-49 1-22 (129)
263 cd00464 SK Shikimate kinase (S 98.1 4.9E-06 1.1E-10 57.5 4.2 26 27-52 1-26 (154)
264 COG2204 AtoC Response regulato 98.1 8.6E-05 1.9E-09 60.0 11.7 62 1-65 143-205 (464)
265 PLN02200 adenylate kinase fami 98.1 4.9E-06 1.1E-10 61.9 4.2 37 25-65 43-79 (234)
266 PRK09183 transposase/IS protei 98.1 4.1E-06 8.8E-11 63.3 3.6 25 25-49 102-126 (259)
267 PTZ00088 adenylate kinase 1; P 98.0 5.8E-06 1.3E-10 61.2 4.3 36 26-65 7-42 (229)
268 cd01428 ADK Adenylate kinase ( 98.0 5.7E-06 1.2E-10 59.4 4.0 24 28-51 2-25 (194)
269 PF01637 Arch_ATPase: Archaeal 98.0 9.2E-06 2E-10 59.6 5.2 44 1-49 1-44 (234)
270 COG0563 Adk Adenylate kinase a 98.0 5.8E-06 1.3E-10 58.9 3.8 35 27-65 2-36 (178)
271 PRK06762 hypothetical protein; 98.0 6.8E-06 1.5E-10 57.7 4.1 26 26-51 3-28 (166)
272 cd00227 CPT Chloramphenicol (C 98.0 6.4E-06 1.4E-10 58.5 3.9 27 25-51 2-28 (175)
273 TIGR01360 aden_kin_iso1 adenyl 98.0 4.7E-06 1E-10 59.5 3.2 26 26-51 4-29 (188)
274 PRK14528 adenylate kinase; Pro 98.0 6.9E-06 1.5E-10 59.0 3.9 26 26-51 2-27 (186)
275 PRK00279 adk adenylate kinase; 98.0 7.2E-06 1.6E-10 60.2 4.1 35 27-65 2-36 (215)
276 PF13245 AAA_19: Part of AAA d 98.0 8.5E-06 1.8E-10 49.8 3.7 24 26-49 11-35 (76)
277 PRK07261 topology modulation p 98.0 8.4E-06 1.8E-10 57.7 4.2 25 27-51 2-26 (171)
278 KOG2170|consensus 98.0 1.6E-05 3.4E-10 60.4 5.8 49 1-49 84-134 (344)
279 TIGR01351 adk adenylate kinase 98.0 6.2E-06 1.3E-10 60.3 3.5 34 28-65 2-35 (210)
280 cd02021 GntK Gluconate kinase 98.0 6.6E-06 1.4E-10 56.8 3.4 24 28-51 2-25 (150)
281 PRK06217 hypothetical protein; 98.0 9.5E-06 2.1E-10 58.0 4.3 26 27-52 3-28 (183)
282 TIGR01313 therm_gnt_kin carboh 98.0 5.5E-06 1.2E-10 58.0 3.0 23 28-50 1-23 (163)
283 cd02019 NK Nucleoside/nucleoti 98.0 9.1E-06 2E-10 48.7 3.4 22 28-49 2-23 (69)
284 cd02020 CMPK Cytidine monophos 98.0 9.9E-06 2.2E-10 55.4 4.0 25 28-52 2-26 (147)
285 PRK08154 anaerobic benzoate ca 98.0 2.6E-05 5.6E-10 60.4 6.7 28 25-52 133-160 (309)
286 PRK14527 adenylate kinase; Pro 98.0 7.6E-06 1.6E-10 58.9 3.5 27 25-51 6-32 (191)
287 PRK13948 shikimate kinase; Pro 97.9 1.5E-05 3.3E-10 57.0 4.8 29 24-52 9-37 (182)
288 PRK04040 adenylate kinase; Pro 97.9 1.3E-05 2.9E-10 57.6 4.4 25 26-50 3-27 (188)
289 TIGR03015 pepcterm_ATPase puta 97.9 2.5E-05 5.5E-10 58.9 6.1 29 134-162 177-206 (269)
290 COG1936 Predicted nucleotide k 97.9 9.3E-06 2E-10 56.9 3.3 25 27-52 2-26 (180)
291 PRK02496 adk adenylate kinase; 97.9 9.1E-06 2E-10 58.1 3.4 25 27-51 3-27 (184)
292 PRK11361 acetoacetate metaboli 97.9 3.6E-05 7.7E-10 62.6 7.1 40 25-64 166-206 (457)
293 COG3604 FhlA Transcriptional r 97.9 0.00012 2.7E-09 59.1 9.9 61 1-64 225-286 (550)
294 PRK13946 shikimate kinase; Pro 97.9 1.4E-05 3.1E-10 57.2 4.3 28 25-52 10-37 (184)
295 PF13086 AAA_11: AAA domain; P 97.9 1.4E-05 3.1E-10 58.6 4.4 23 27-49 19-41 (236)
296 PRK06547 hypothetical protein; 97.9 2.8E-05 6E-10 55.2 5.6 27 25-51 15-41 (172)
297 PF00406 ADK: Adenylate kinase 97.9 9.2E-06 2E-10 56.2 3.1 35 30-68 1-35 (151)
298 PF12774 AAA_6: Hydrolytic ATP 97.9 8.6E-05 1.9E-09 55.1 8.4 119 26-158 33-177 (231)
299 PRK06696 uridine kinase; Valid 97.9 4.4E-05 9.5E-10 56.4 6.8 26 25-50 22-47 (223)
300 PF03969 AFG1_ATPase: AFG1-lik 97.9 2.6E-05 5.7E-10 61.5 5.9 28 24-51 61-88 (362)
301 PRK14526 adenylate kinase; Pro 97.9 1.3E-05 2.8E-10 58.7 3.9 34 27-64 2-35 (211)
302 PF02367 UPF0079: Uncharacteri 97.9 2.3E-05 4.9E-10 52.4 4.7 29 24-52 14-42 (123)
303 PHA02624 large T antigen; Prov 97.9 2.9E-05 6.2E-10 64.4 6.0 31 20-50 426-456 (647)
304 COG4088 Predicted nucleotide k 97.9 1E-05 2.2E-10 58.4 2.9 23 27-49 3-25 (261)
305 PRK03731 aroL shikimate kinase 97.9 2E-05 4.3E-10 55.6 4.5 27 26-52 3-29 (171)
306 PRK05973 replicative DNA helic 97.9 2.7E-05 5.8E-10 57.9 5.2 31 19-49 58-88 (237)
307 PF13401 AAA_22: AAA domain; P 97.9 1.3E-05 2.8E-10 53.8 3.3 24 26-49 5-28 (131)
308 PRK05057 aroK shikimate kinase 97.9 2.1E-05 4.6E-10 55.7 4.5 27 26-52 5-31 (172)
309 KOG0477|consensus 97.9 5.4E-05 1.2E-09 62.6 7.1 48 1-51 451-508 (854)
310 PF00493 MCM: MCM2/3/5 family 97.9 1E-06 2.2E-11 68.8 -2.6 49 1-49 26-81 (331)
311 PRK05541 adenylylsulfate kinas 97.9 1.7E-05 3.7E-10 56.3 3.9 27 24-50 6-32 (176)
312 cd01394 radB RadB. The archaea 97.9 2.5E-05 5.5E-10 57.3 4.8 33 17-49 11-43 (218)
313 TIGR02322 phosphon_PhnN phosph 97.9 1.7E-05 3.6E-10 56.4 3.7 26 26-51 2-27 (179)
314 TIGR03877 thermo_KaiC_1 KaiC d 97.9 3.1E-05 6.7E-10 57.7 5.2 35 14-48 10-44 (237)
315 PLN02459 probable adenylate ki 97.8 2E-05 4.3E-10 59.3 4.1 38 26-67 30-67 (261)
316 PHA02774 E1; Provisional 97.8 3.7E-05 8.1E-10 63.5 5.8 43 8-51 418-460 (613)
317 TIGR01818 ntrC nitrogen regula 97.8 5.7E-05 1.2E-09 61.5 7.0 133 25-163 157-324 (463)
318 PF03266 NTPase_1: NTPase; In 97.8 1.8E-05 3.9E-10 55.9 3.5 23 27-49 1-23 (168)
319 PRK14529 adenylate kinase; Pro 97.8 2E-05 4.3E-10 58.1 3.6 25 27-51 2-26 (223)
320 TIGR01618 phage_P_loop phage n 97.8 1.1E-05 2.4E-10 59.3 2.3 23 25-47 12-34 (220)
321 PRK10646 ADP-binding protein; 97.8 7E-05 1.5E-09 51.9 6.1 29 24-52 27-55 (153)
322 PF08298 AAA_PrkA: PrkA AAA do 97.8 6.2E-05 1.3E-09 58.7 6.4 49 1-49 63-112 (358)
323 KOG0482|consensus 97.8 3.7E-05 8E-10 62.3 5.3 48 1-51 344-401 (721)
324 PRK08233 hypothetical protein; 97.8 2.1E-05 4.4E-10 55.9 3.6 25 26-50 4-28 (182)
325 PF00931 NB-ARC: NB-ARC domain 97.8 3.6E-05 7.7E-10 58.6 5.1 38 11-48 5-42 (287)
326 PF00448 SRP54: SRP54-type pro 97.8 2.1E-05 4.5E-10 57.0 3.6 25 25-49 1-25 (196)
327 PRK15115 response regulator Gl 97.8 6.2E-05 1.3E-09 61.0 6.5 38 26-63 158-196 (444)
328 PRK10078 ribose 1,5-bisphospho 97.8 2E-05 4.3E-10 56.5 3.2 26 26-51 3-28 (186)
329 TIGR02237 recomb_radB DNA repa 97.8 3E-05 6.6E-10 56.5 4.1 32 18-49 5-36 (209)
330 COG3829 RocR Transcriptional r 97.8 0.0007 1.5E-08 55.4 11.9 42 24-65 267-309 (560)
331 PRK00889 adenylylsulfate kinas 97.8 3.3E-05 7.2E-10 54.7 3.9 27 24-50 3-29 (175)
332 PRK09361 radB DNA repair and r 97.8 4.3E-05 9.3E-10 56.3 4.7 34 16-49 14-47 (225)
333 PF06745 KaiC: KaiC; InterPro 97.8 3.5E-05 7.6E-10 56.8 4.1 43 16-58 10-56 (226)
334 cd01120 RecA-like_NTPases RecA 97.7 2.6E-05 5.6E-10 53.9 3.2 24 27-50 1-24 (165)
335 cd01124 KaiC KaiC is a circadi 97.7 3.7E-05 8E-10 54.8 4.0 22 28-49 2-23 (187)
336 PHA02530 pseT polynucleotide k 97.7 2.8E-05 6E-10 59.8 3.5 24 26-49 3-26 (300)
337 PRK12339 2-phosphoglycerate ki 97.7 4E-05 8.6E-10 55.5 4.0 26 26-51 4-29 (197)
338 COG0467 RAD55 RecA-superfamily 97.7 6.4E-05 1.4E-09 56.7 5.3 41 19-59 17-60 (260)
339 TIGR03574 selen_PSTK L-seryl-t 97.7 2.9E-05 6.3E-10 58.2 3.4 23 28-50 2-24 (249)
340 TIGR02688 conserved hypothetic 97.7 8E-05 1.7E-09 59.5 5.9 36 9-48 197-232 (449)
341 PF05729 NACHT: NACHT domain 97.7 3.5E-05 7.6E-10 53.5 3.5 24 26-49 1-24 (166)
342 PRK14722 flhF flagellar biosyn 97.7 6.7E-05 1.4E-09 59.4 5.3 25 25-49 137-161 (374)
343 PRK14700 recombination factor 97.7 3.3E-05 7.2E-10 58.8 3.5 41 123-163 14-54 (300)
344 PRK13406 bchD magnesium chelat 97.7 0.00023 4.9E-09 59.6 8.6 141 4-153 8-174 (584)
345 TIGR03881 KaiC_arch_4 KaiC dom 97.7 6.1E-05 1.3E-09 55.7 4.7 33 16-48 11-43 (229)
346 PRK13900 type IV secretion sys 97.7 0.00011 2.4E-09 57.5 6.3 28 25-52 160-187 (332)
347 COG1618 Predicted nucleotide k 97.7 3.9E-05 8.5E-10 53.2 3.3 25 26-50 6-30 (179)
348 PRK04220 2-phosphoglycerate ki 97.7 0.00011 2.4E-09 56.3 6.1 27 26-52 93-119 (301)
349 TIGR03878 thermo_KaiC_2 KaiC d 97.7 6.7E-05 1.5E-09 56.7 4.9 40 20-59 31-73 (259)
350 cd01130 VirB11-like_ATPase Typ 97.7 0.00016 3.5E-09 51.8 6.6 27 25-51 25-51 (186)
351 PF00519 PPV_E1_C: Papillomavi 97.7 0.00024 5.1E-09 56.1 7.9 45 7-52 245-289 (432)
352 PRK01184 hypothetical protein; 97.7 3.9E-05 8.5E-10 54.8 3.4 24 27-51 3-26 (184)
353 PRK14737 gmk guanylate kinase; 97.7 4.3E-05 9.3E-10 54.9 3.5 26 24-49 3-28 (186)
354 PF13521 AAA_28: AAA domain; P 97.7 3.5E-05 7.5E-10 54.0 3.0 22 28-50 2-23 (163)
355 COG5271 MDN1 AAA ATPase contai 97.7 5.9E-05 1.3E-09 68.7 4.9 141 15-160 878-1046(4600)
356 PRK13975 thymidylate kinase; P 97.7 4.9E-05 1.1E-09 54.7 3.8 26 26-51 3-28 (196)
357 PRK07667 uridine kinase; Provi 97.7 0.00011 2.3E-09 53.1 5.4 25 26-50 18-42 (193)
358 PRK13808 adenylate kinase; Pro 97.7 5E-05 1.1E-09 59.1 3.9 35 27-65 2-36 (333)
359 PF01745 IPT: Isopentenyl tran 97.7 7.7E-05 1.7E-09 54.2 4.5 37 26-64 2-38 (233)
360 PF00485 PRK: Phosphoribulokin 97.7 4.9E-05 1.1E-09 54.8 3.5 25 28-52 2-26 (194)
361 PLN02199 shikimate kinase 97.7 0.00015 3.3E-09 55.4 6.2 29 24-52 101-129 (303)
362 PRK04182 cytidylate kinase; Pr 97.7 5.3E-05 1.2E-09 53.6 3.6 26 27-52 2-27 (180)
363 PRK12338 hypothetical protein; 97.6 4.9E-05 1.1E-09 58.7 3.6 26 26-51 5-30 (319)
364 PRK10416 signal recognition pa 97.6 0.00012 2.6E-09 56.9 5.8 25 25-49 114-138 (318)
365 PRK00300 gmk guanylate kinase; 97.6 5.3E-05 1.1E-09 55.0 3.6 27 24-50 4-30 (205)
366 TIGR03263 guanyl_kin guanylate 97.6 4.3E-05 9.4E-10 54.3 3.1 25 26-50 2-26 (180)
367 PRK04328 hypothetical protein; 97.6 7.2E-05 1.6E-09 56.2 4.4 35 14-48 12-46 (249)
368 PRK13851 type IV secretion sys 97.6 0.0001 2.2E-09 57.9 5.2 28 25-52 162-189 (344)
369 cd02027 APSK Adenosine 5'-phos 97.6 5.5E-05 1.2E-09 52.3 3.4 22 28-49 2-23 (149)
370 TIGR00064 ftsY signal recognit 97.6 8.4E-05 1.8E-09 56.5 4.5 25 25-49 72-96 (272)
371 PRK06067 flagellar accessory p 97.6 8.2E-05 1.8E-09 55.2 4.4 36 14-49 14-49 (234)
372 PRK09825 idnK D-gluconate kina 97.6 7.3E-05 1.6E-09 53.2 3.9 27 25-51 3-29 (176)
373 KOG0481|consensus 97.6 0.00012 2.7E-09 59.4 5.2 46 1-49 333-388 (729)
374 TIGR02173 cyt_kin_arch cytidyl 97.6 7.6E-05 1.6E-09 52.4 3.6 26 27-52 2-27 (171)
375 PRK05480 uridine/cytidine kina 97.6 7.4E-05 1.6E-09 54.5 3.6 26 25-50 6-31 (209)
376 TIGR02655 circ_KaiC circadian 97.6 8.2E-05 1.8E-09 61.1 4.2 35 14-48 10-44 (484)
377 COG1855 ATPase (PilT family) [ 97.6 0.00014 3E-09 58.3 5.3 26 26-51 264-289 (604)
378 PRK00771 signal recognition pa 97.6 0.00019 4.1E-09 58.1 5.9 25 25-49 95-119 (437)
379 PRK14738 gmk guanylate kinase; 97.6 8.2E-05 1.8E-09 54.3 3.5 24 25-48 13-36 (206)
380 PRK08533 flagellar accessory p 97.6 6.2E-05 1.3E-09 55.9 2.9 33 17-49 16-48 (230)
381 COG0802 Predicted ATPase or ki 97.5 0.0003 6.4E-09 48.3 5.9 30 22-51 22-51 (149)
382 TIGR00235 udk uridine kinase. 97.5 9.2E-05 2E-09 54.0 3.7 27 25-51 6-32 (207)
383 PLN02165 adenylate isopentenyl 97.5 0.00011 2.4E-09 57.1 4.2 27 25-51 43-69 (334)
384 KOG1051|consensus 97.5 0.00011 2.3E-09 63.6 4.5 149 1-160 188-362 (898)
385 PF13604 AAA_30: AAA domain; P 97.5 0.00023 5E-09 51.5 5.7 24 26-49 19-42 (196)
386 cd01123 Rad51_DMC1_radA Rad51_ 97.5 9.8E-05 2.1E-09 54.7 3.8 31 18-48 12-42 (235)
387 cd02023 UMPK Uridine monophosp 97.5 8.6E-05 1.9E-09 53.7 3.4 22 28-49 2-23 (198)
388 cd00071 GMPK Guanosine monopho 97.5 7.9E-05 1.7E-09 50.8 3.0 23 28-50 2-24 (137)
389 PRK10536 hypothetical protein; 97.5 0.0002 4.3E-09 53.8 5.3 23 26-48 75-97 (262)
390 cd01393 recA_like RecA is a b 97.5 0.00013 2.9E-09 53.6 4.4 32 18-49 12-43 (226)
391 PF00437 T2SE: Type II/IV secr 97.5 0.00016 3.5E-09 54.8 4.9 28 25-52 127-154 (270)
392 KOG2543|consensus 97.5 0.00072 1.6E-08 53.2 8.4 38 25-64 30-67 (438)
393 PTZ00202 tuzin; Provisional 97.5 0.00017 3.7E-09 58.1 5.0 48 1-50 264-311 (550)
394 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.00014 2.9E-09 53.7 4.3 33 16-48 7-39 (224)
395 PRK05537 bifunctional sulfate 97.5 0.00018 3.9E-09 60.1 5.2 28 24-51 391-418 (568)
396 TIGR02655 circ_KaiC circadian 97.5 0.00021 4.6E-09 58.7 5.6 37 13-49 251-287 (484)
397 TIGR02782 TrbB_P P-type conjug 97.5 0.00023 5E-09 54.9 5.5 26 25-50 132-157 (299)
398 PRK05800 cobU adenosylcobinami 97.5 0.00019 4.2E-09 50.8 4.7 35 27-63 3-37 (170)
399 PRK09518 bifunctional cytidyla 97.5 0.00011 2.5E-09 63.0 4.1 25 27-51 3-27 (712)
400 PRK10365 transcriptional regul 97.5 0.00032 6.8E-09 56.8 6.5 135 25-163 162-329 (441)
401 COG0283 Cmk Cytidylate kinase 97.5 0.00012 2.6E-09 53.2 3.5 35 27-65 6-40 (222)
402 TIGR03499 FlhF flagellar biosy 97.5 0.00011 2.5E-09 56.1 3.6 25 25-49 194-218 (282)
403 PRK13833 conjugal transfer pro 97.5 0.00025 5.3E-09 55.2 5.5 25 25-49 144-168 (323)
404 PRK06761 hypothetical protein; 97.5 0.00012 2.6E-09 55.8 3.7 26 26-51 4-29 (282)
405 PF01583 APS_kinase: Adenylyls 97.5 0.00013 2.8E-09 50.8 3.5 24 26-49 3-26 (156)
406 COG0194 Gmk Guanylate kinase [ 97.5 0.00011 2.3E-09 52.3 3.1 25 25-49 4-28 (191)
407 cd01131 PilT Pilus retraction 97.5 0.00012 2.5E-09 53.1 3.3 24 27-50 3-26 (198)
408 cd00984 DnaB_C DnaB helicase C 97.5 0.00019 4E-09 53.4 4.4 29 21-49 9-37 (242)
409 COG3839 MalK ABC-type sugar tr 97.4 0.00012 2.5E-09 57.1 3.3 25 25-49 29-53 (338)
410 TIGR02012 tigrfam_recA protein 97.4 0.0002 4.3E-09 55.6 4.6 30 20-49 50-79 (321)
411 cd03115 SRP The signal recogni 97.4 0.00014 2.9E-09 51.5 3.4 23 27-49 2-24 (173)
412 PLN03210 Resistant to P. syrin 97.4 0.00023 5E-09 64.2 5.6 48 1-51 186-233 (1153)
413 PRK00091 miaA tRNA delta(2)-is 97.4 0.0002 4.3E-09 55.4 4.4 26 26-51 5-30 (307)
414 PRK06995 flhF flagellar biosyn 97.4 0.00031 6.7E-09 57.4 5.7 25 25-49 256-280 (484)
415 PRK13477 bifunctional pantoate 97.4 0.00019 4.1E-09 59.0 4.5 37 25-65 284-320 (512)
416 cd01918 HprK_C HprK/P, the bif 97.4 0.00015 3.1E-09 50.1 3.3 24 25-48 14-37 (149)
417 KOG3354|consensus 97.4 0.00018 3.8E-09 49.7 3.6 27 26-52 13-39 (191)
418 cd02028 UMPK_like Uridine mono 97.4 0.00015 3.2E-09 51.8 3.4 23 28-50 2-24 (179)
419 COG3854 SpoIIIAA ncharacterize 97.4 0.00022 4.8E-09 52.6 4.3 30 17-49 132-161 (308)
420 TIGR02236 recomb_radA DNA repa 97.4 0.00024 5.1E-09 55.1 4.8 31 19-49 89-119 (310)
421 TIGR00041 DTMP_kinase thymidyl 97.4 0.00016 3.5E-09 52.0 3.6 26 26-51 4-29 (195)
422 PRK04132 replication factor C 97.4 0.00014 3.1E-09 62.9 3.8 35 1-40 21-55 (846)
423 TIGR00017 cmk cytidylate kinas 97.4 0.00018 3.9E-09 52.9 3.9 25 27-51 4-28 (217)
424 PF00625 Guanylate_kin: Guanyl 97.4 0.00023 5E-09 50.8 4.3 27 25-51 2-28 (183)
425 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00016 3.5E-09 47.0 3.0 22 25-46 15-36 (107)
426 PF04851 ResIII: Type III rest 97.4 0.00053 1.2E-08 48.3 6.0 44 4-51 8-51 (184)
427 cd01121 Sms Sms (bacterial rad 97.4 0.00022 4.8E-09 56.6 4.4 35 15-49 72-106 (372)
428 COG3842 PotA ABC-type spermidi 97.4 0.00015 3.3E-09 56.8 3.4 23 26-48 32-54 (352)
429 PRK11823 DNA repair protein Ra 97.4 0.00023 5.1E-09 57.8 4.6 36 14-49 69-104 (446)
430 PRK12723 flagellar biosynthesi 97.4 0.00017 3.6E-09 57.5 3.7 25 25-49 174-198 (388)
431 PRK09270 nucleoside triphospha 97.4 0.00061 1.3E-08 50.5 6.4 27 25-51 33-59 (229)
432 cd01672 TMPK Thymidine monopho 97.4 0.00018 3.8E-09 51.6 3.4 23 27-49 2-24 (200)
433 PRK14974 cell division protein 97.4 0.00023 4.9E-09 55.7 4.1 25 25-49 140-164 (336)
434 smart00072 GuKc Guanylate kina 97.4 0.00018 3.8E-09 51.5 3.3 24 26-49 3-26 (184)
435 PTZ00301 uridine kinase; Provi 97.4 0.00018 3.9E-09 52.7 3.3 23 27-49 5-27 (210)
436 PRK08099 bifunctional DNA-bind 97.4 0.00019 4.1E-09 57.5 3.7 28 25-52 219-246 (399)
437 PF06414 Zeta_toxin: Zeta toxi 97.4 0.00027 5.8E-09 51.2 4.2 38 25-63 15-52 (199)
438 PRK11545 gntK gluconate kinase 97.4 0.00014 3E-09 51.1 2.5 20 31-50 1-20 (163)
439 cd02024 NRK1 Nicotinamide ribo 97.4 0.00019 4.1E-09 51.5 3.3 23 28-50 2-24 (187)
440 PF13555 AAA_29: P-loop contai 97.4 0.00034 7.4E-09 40.8 3.7 24 26-49 24-47 (62)
441 PRK08356 hypothetical protein; 97.3 0.00018 4E-09 51.9 3.2 24 26-50 6-29 (195)
442 PF13479 AAA_24: AAA domain 97.3 0.00013 2.8E-09 53.5 2.4 20 26-45 4-23 (213)
443 PRK03846 adenylylsulfate kinas 97.3 0.00023 4.9E-09 51.6 3.6 26 25-50 24-49 (198)
444 TIGR02858 spore_III_AA stage I 97.3 0.00049 1.1E-08 52.3 5.5 26 26-51 112-137 (270)
445 PLN02840 tRNA dimethylallyltra 97.3 0.0003 6.6E-09 56.3 4.5 27 26-52 22-48 (421)
446 COG2074 2-phosphoglycerate kin 97.3 0.0006 1.3E-08 50.8 5.6 28 25-52 89-116 (299)
447 COG1120 FepC ABC-type cobalami 97.3 0.00035 7.5E-09 52.5 4.5 39 25-63 28-66 (258)
448 PRK13894 conjugal transfer ATP 97.3 0.00048 1E-08 53.6 5.5 25 25-49 148-172 (319)
449 PRK05439 pantothenate kinase; 97.3 0.00069 1.5E-08 52.4 6.2 25 26-50 87-111 (311)
450 cd00983 recA RecA is a bacter 97.3 0.00032 7E-09 54.5 4.5 30 20-49 50-79 (325)
451 TIGR00376 DNA helicase, putati 97.3 0.00028 6.1E-09 59.8 4.4 24 26-49 174-197 (637)
452 TIGR00416 sms DNA repair prote 97.3 0.00033 7.2E-09 57.0 4.7 36 14-49 83-118 (454)
453 PRK13764 ATPase; Provisional 97.3 0.00022 4.7E-09 59.7 3.7 27 25-51 257-283 (602)
454 TIGR00750 lao LAO/AO transport 97.3 0.00051 1.1E-08 53.0 5.5 25 25-49 34-58 (300)
455 PF08477 Miro: Miro-like prote 97.3 0.00027 5.7E-09 46.5 3.4 23 27-49 1-23 (119)
456 PRK04301 radA DNA repair and r 97.3 0.00029 6.2E-09 54.8 4.0 31 19-49 96-126 (317)
457 PRK09302 circadian clock prote 97.3 0.00033 7.2E-09 57.9 4.6 35 14-48 20-54 (509)
458 PF00005 ABC_tran: ABC transpo 97.3 0.00022 4.8E-09 48.2 3.0 26 24-49 10-35 (137)
459 PRK12337 2-phosphoglycerate ki 97.3 0.00025 5.5E-09 57.4 3.7 28 25-52 255-282 (475)
460 cd02025 PanK Pantothenate kina 97.3 0.00024 5.2E-09 52.4 3.3 23 28-50 2-24 (220)
461 TIGR00455 apsK adenylylsulfate 97.3 0.00032 6.9E-09 50.1 3.8 26 24-49 17-42 (184)
462 PF03193 DUF258: Protein of un 97.3 0.00046 1E-08 48.3 4.4 25 25-49 35-59 (161)
463 TIGR00174 miaA tRNA isopenteny 97.3 0.00037 8E-09 53.3 4.3 24 28-51 2-25 (287)
464 PRK11889 flhF flagellar biosyn 97.3 0.00051 1.1E-08 54.7 5.1 25 25-49 241-265 (436)
465 cd00046 DEXDc DEAD-like helica 97.3 0.00029 6.2E-09 46.9 3.3 25 26-50 1-25 (144)
466 COG1126 GlnQ ABC-type polar am 97.3 0.00026 5.7E-09 51.6 3.2 24 25-48 28-51 (240)
467 TIGR02788 VirB11 P-type DNA tr 97.3 0.0006 1.3E-08 52.8 5.4 28 24-51 143-170 (308)
468 PRK00023 cmk cytidylate kinase 97.3 0.00038 8.3E-09 51.5 4.1 27 26-52 5-31 (225)
469 COG4619 ABC-type uncharacteriz 97.3 0.00063 1.4E-08 47.9 4.8 28 25-52 29-56 (223)
470 COG1373 Predicted ATPase (AAA+ 97.2 0.0054 1.2E-07 49.2 10.8 114 27-155 39-161 (398)
471 TIGR01613 primase_Cterm phage/ 97.2 0.0038 8.3E-08 48.2 9.6 49 4-52 54-103 (304)
472 cd01128 rho_factor Transcripti 97.2 0.00033 7.2E-09 52.6 3.6 27 25-51 16-42 (249)
473 cd02022 DPCK Dephospho-coenzym 97.2 0.00035 7.5E-09 49.8 3.5 22 28-50 2-23 (179)
474 PRK13951 bifunctional shikimat 97.2 0.0004 8.8E-09 57.0 4.2 26 27-52 2-27 (488)
475 PRK09435 membrane ATPase/prote 97.2 0.00099 2.1E-08 52.1 6.1 24 26-49 57-80 (332)
476 PF02562 PhoH: PhoH-like prote 97.2 0.00036 7.8E-09 50.8 3.5 24 26-49 20-43 (205)
477 PRK05703 flhF flagellar biosyn 97.2 0.00034 7.5E-09 56.5 3.7 25 25-49 221-245 (424)
478 PRK14021 bifunctional shikimat 97.2 0.00042 9E-09 57.7 4.3 27 26-52 7-33 (542)
479 PRK15453 phosphoribulokinase; 97.2 0.00054 1.2E-08 52.1 4.4 26 26-51 6-31 (290)
480 TIGR01526 nadR_NMN_Atrans nico 97.2 0.00042 9.2E-09 54.1 4.0 28 25-52 162-189 (325)
481 cd01122 GP4d_helicase GP4d_hel 97.2 0.00039 8.4E-09 52.7 3.7 30 20-49 25-54 (271)
482 PLN03187 meiotic recombination 97.2 0.00036 7.9E-09 54.7 3.6 29 19-47 120-148 (344)
483 COG1116 TauB ABC-type nitrate/ 97.2 0.0004 8.6E-09 51.6 3.5 25 25-49 29-53 (248)
484 PF10662 PduV-EutP: Ethanolami 97.2 0.00035 7.6E-09 47.8 3.0 22 26-47 2-23 (143)
485 PRK10867 signal recognition pa 97.2 0.00032 6.9E-09 56.7 3.2 25 25-49 100-124 (433)
486 KOG1803|consensus 97.2 0.00038 8.2E-09 57.4 3.6 24 26-49 202-226 (649)
487 PRK00698 tmk thymidylate kinas 97.2 0.00042 9.2E-09 50.1 3.6 25 26-50 4-28 (205)
488 TIGR03575 selen_PSTK_euk L-ser 97.2 0.00054 1.2E-08 53.7 4.3 23 28-50 2-24 (340)
489 PRK12724 flagellar biosynthesi 97.2 0.00046 1E-08 55.3 4.0 24 26-49 224-247 (432)
490 COG0464 SpoVK ATPases of the A 97.2 0.0021 4.5E-08 53.0 7.9 134 20-160 13-162 (494)
491 TIGR01425 SRP54_euk signal rec 97.2 0.0011 2.3E-08 53.5 5.9 25 25-49 100-124 (429)
492 cd01673 dNK Deoxyribonucleosid 97.2 0.00043 9.4E-09 49.7 3.5 24 28-51 2-25 (193)
493 PRK04296 thymidine kinase; Pro 97.2 0.00043 9.4E-09 49.8 3.4 24 26-49 3-26 (190)
494 COG0324 MiaA tRNA delta(2)-iso 97.2 0.00058 1.3E-08 52.5 4.3 27 26-52 4-30 (308)
495 PRK12608 transcription termina 97.2 0.00044 9.5E-09 54.6 3.6 27 25-51 133-159 (380)
496 PLN02796 D-glycerate 3-kinase 97.2 0.0012 2.5E-08 51.7 5.9 25 26-50 101-125 (347)
497 TIGR02238 recomb_DMC1 meiotic 97.2 0.00037 8.1E-09 54.0 3.2 29 19-47 90-118 (313)
498 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00045 9.7E-09 50.6 3.4 27 24-50 29-55 (218)
499 cd01853 Toc34_like Toc34-like 97.1 0.0012 2.6E-08 49.6 5.7 43 6-48 12-54 (249)
500 PRK13695 putative NTPase; Prov 97.1 0.00051 1.1E-08 48.6 3.6 23 27-49 2-24 (174)
No 1
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-25 Score=179.32 Aligned_cols=155 Identities=29% Similarity=0.426 Sum_probs=127.4
Q ss_pred CchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc--
Q psy14616 2 VGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI-- 78 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (174)
+|.+++|+++-.+++.-+ .....+.-++|+||||||||++++.+|+.+|++ |++++-+.+ .|++++.
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fvR~sLGGv--------rDEAEIRGH 395 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FVRISLGGV--------RDEAEIRGH 395 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EEEEecCcc--------ccHHHhccc
Confidence 688999977665553332 233445688899999999999999999999976 777776554 3555553
Q ss_pred --------c--------------CcEEEEEEeccCCCC-C----------CccceeEEEeccchhhhccccccchhhhcc
Q psy14616 79 --------E--------------GEVVEIQIERPATGL-G----------SKVGKLTMKTTEMETSYDLGAKMIEAIGTA 125 (174)
Q Consensus 79 --------~--------------~~i~~~~id~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 125 (174)
| ..++++|||++.+++ + |++||..|.+++++..+|+++++| +||+
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF--iaTA 473 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF--IATA 473 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE--Eeec
Confidence 2 257778999996555 2 578999999999999999999999 8898
Q ss_pred cCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhhhhhh
Q psy14616 126 YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEI 169 (174)
Q Consensus 126 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~~~~~ 169 (174)
|....+|.+|++|+.+|+++.|+++|..+|.+++|.+++..+-
T Consensus 474 -Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~ 516 (782)
T COG0466 474 -NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEH 516 (782)
T ss_pred -CccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHc
Confidence 8889999999999999999999999999999999999887654
No 2
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.91 E-value=3.6e-25 Score=161.76 Aligned_cols=156 Identities=22% Similarity=0.291 Sum_probs=117.1
Q ss_pred CCchHHHHHHHHHHHHHHHhc----CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh----
Q psy14616 1 MVGQLQARRAAGVVLGMIKEG----KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE---- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g----~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---- 72 (174)
|||||++++....+.+.+++. .-.|+++|||||||||||++|+++|.++. +++..+++..+++..+|...
T Consensus 123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~l~vkat~liGehVGdgar~Ih 200 (368)
T COG1223 123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPLLLVKATELIGEHVGDGARRIH 200 (368)
T ss_pred hhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--CceEEechHHHHHHHhhhHHHHHH
Confidence 699999999999999999873 33469999999999999999999999987 78999999888887776654
Q ss_pred ---hhh-hhccCcEEEEEEeccC-CC-C----CC--ccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcce
Q psy14616 73 ---EET-EMIEGEVVEIQIERPA-TG-L----GS--KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM 140 (174)
Q Consensus 73 ---~~~-~~~~~~i~~~~id~~~-~~-~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~ 140 (174)
+-+ +..|+.++++|+|.+. +. + +| +.-|.. ...++.....-.++. ||+| |++..++++++|||
T Consensus 201 ely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNAL--LTelDgi~eneGVvt--IaaT-N~p~~LD~aiRsRF 275 (368)
T COG1223 201 ELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNAL--LTELDGIKENEGVVT--IAAT-NRPELLDPAIRSRF 275 (368)
T ss_pred HHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHH--HHhccCcccCCceEE--Eeec-CChhhcCHHHHhhh
Confidence 112 4468888999999772 22 1 11 111111 112222222233444 6676 89999999999999
Q ss_pred -eeEecCCCCHHHHHHHHHHHhch
Q psy14616 141 -VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 141 -~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.-|+|.-|+++|..+|++.++.+
T Consensus 276 EeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 276 EEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred hheeeeeCCChHHHHHHHHHHHHh
Confidence 78999999999999999998743
No 3
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.4e-24 Score=164.71 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=111.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc--
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI-- 78 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (174)
+|||+++...-..+.+++++|..+ +++|||||||||||+|+.+|..++.. |..+++...-..++..+.+.++..
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~~~l~--SmIl~GPPG~GKTTlA~liA~~~~~~--f~~~sAv~~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEAGHLH--SMILWGPPGTGKTTLARLIAGTTNAA--FEALSAVTSGVKDLREIIEEARKNRL 101 (436)
T ss_pred hcChHhhhCCCchHHHHHhcCCCc--eeEEECCCCCCHHHHHHHHHHhhCCc--eEEeccccccHHHHHHHHHHHHHHHh
Confidence 689999998888999999999886 99999999999999999999999854 888888776667777777666332
Q ss_pred cCcEEEEEEecc--CCCCCCccceeEEEeccchhhhccccccchhh-hcccCCCCCCCHHhhcceeeEecCCCCHHHHHH
Q psy14616 79 EGEVVEIQIERP--ATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI-GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 155 (174)
Q Consensus 79 ~~~i~~~~id~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 155 (174)
.|.-.++++|++ +++ .+|...+--. .-+..++ | |||.|+...++++|+|||+++.|.+++.+++.+
T Consensus 102 ~gr~tiLflDEIHRfnK---~QQD~lLp~v------E~G~iil--IGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~ 170 (436)
T COG2256 102 LGRRTILFLDEIHRFNK---AQQDALLPHV------ENGTIIL--IGATTENPSFELNPALLSRARVFELKPLSSEDIKK 170 (436)
T ss_pred cCCceEEEEehhhhcCh---hhhhhhhhhh------cCCeEEE--EeccCCCCCeeecHHHhhhhheeeeecCCHHHHHH
Confidence 344444444444 355 2332221111 1122223 3 466677799999999999999999999999999
Q ss_pred HHHHHhchhh
Q psy14616 156 ILKIRLVKNE 165 (174)
Q Consensus 156 il~~~l~~~~ 165 (174)
++.+.+..+.
T Consensus 171 ~l~ra~~~~~ 180 (436)
T COG2256 171 LLKRALLDEE 180 (436)
T ss_pred HHHHHHhhhh
Confidence 9999654443
No 4
>KOG2004|consensus
Probab=99.91 E-value=2.5e-24 Score=174.77 Aligned_cols=155 Identities=24% Similarity=0.349 Sum_probs=125.7
Q ss_pred CchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc--
Q psy14616 2 VGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI-- 78 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (174)
+|.+++|+++-.+.+.-+ .|...+.-++|+||||+|||++++.+|+.||++ |.+++.+.+. |.++|.
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--FfRfSvGG~t--------DvAeIkGH 483 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--FFRFSVGGMT--------DVAEIKGH 483 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--eEEEeccccc--------cHHhhccc
Confidence 688999955555443222 233446788999999999999999999999977 6777766542 333332
Q ss_pred --------c--------------CcEEEEEEeccCCCC-C----------CccceeEEEeccchhhhccccccchhhhcc
Q psy14616 79 --------E--------------GEVVEIQIERPATGL-G----------SKVGKLTMKTTEMETSYDLGAKMIEAIGTA 125 (174)
Q Consensus 79 --------~--------------~~i~~~~id~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 125 (174)
| ..++++|+|++.++. + |++||..|.+++++..+|++.++| +||+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF--icTA 561 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF--ICTA 561 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE--EEec
Confidence 2 357888999996443 2 578999999999999999999999 8999
Q ss_pred cCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhhhhhh
Q psy14616 126 YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEI 169 (174)
Q Consensus 126 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~~~~~ 169 (174)
|....++++|++|+.+|+++.|..+|..+|.+++|.++.+..-
T Consensus 562 -N~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~ 604 (906)
T KOG2004|consen 562 -NVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDC 604 (906)
T ss_pred -cccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHc
Confidence 8999999999999999999999999999999999999887653
No 5
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.86 E-value=9.6e-22 Score=142.14 Aligned_cols=151 Identities=25% Similarity=0.342 Sum_probs=86.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh----h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET----E 76 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (174)
+|||++++..+..+.++.+....+..|++||||||+||||+|+.+|++++.. +...++..+ . +..|.+ .
T Consensus 26 fiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~~~sg~~i-~----k~~dl~~il~~ 98 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FKITSGPAI-E----KAGDLAAILTN 98 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EEEEECCC-------SCHHHHHHHHT
T ss_pred ccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eEeccchhh-h----hHHHHHHHHHh
Confidence 6999999999999888887644445699999999999999999999999955 555554322 1 111222 2
Q ss_pred hccCc-EEEEEEeccCCCC-C------CccceeEEEec--cchhhhccccccchhhhcccCCCCCCCHHhhcceee-Eec
Q psy14616 77 MIEGE-VVEIQIERPATGL-G------SKVGKLTMKTT--EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVI-IPT 145 (174)
Q Consensus 77 ~~~~~-i~~~~id~~~~~~-~------~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~-i~~ 145 (174)
...+. ++++||+++ ++. + .+.+.+.+... .-.....+.-.-|.++++| .+...+.++|++||.+ .++
T Consensus 99 l~~~~ILFIDEIHRl-nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT-Tr~g~ls~pLrdRFgi~~~l 176 (233)
T PF05496_consen 99 LKEGDILFIDEIHRL-NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT-TRAGLLSSPLRDRFGIVLRL 176 (233)
T ss_dssp --TT-EEEECTCCC---HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE-SSGCCTSHCCCTTSSEEEE-
T ss_pred cCCCcEEEEechhhc-cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee-ccccccchhHHhhcceecch
Confidence 22333 444577776 432 1 12333322211 1111122222224447777 5778999999999954 589
Q ss_pred CCCCHHHHHHHHHHH
Q psy14616 146 QPYQDEEIQAILKIR 160 (174)
Q Consensus 146 ~~~~~~e~~~il~~~ 160 (174)
..|+.+|+.+|+++.
T Consensus 177 ~~Y~~~el~~Iv~r~ 191 (233)
T PF05496_consen 177 EFYSEEELAKIVKRS 191 (233)
T ss_dssp ---THHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHH
Confidence 999999999999873
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.1e-22 Score=150.39 Aligned_cols=145 Identities=23% Similarity=0.268 Sum_probs=109.9
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-hhccCcEEEEEEeccC
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-EMIEGEVVEIQIERPA 91 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~i~~~~id~~~ 91 (174)
-|..||+++|||||||||||.||+++|+..+ ..|+.+.++.+..+++|+-. .-+ +..|..|+++|||.+.
T Consensus 180 ~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg 257 (406)
T COG1222 180 LGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG 257 (406)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh
Confidence 3777899999999999999999999999998 45999999999988887754 111 4458889999999883
Q ss_pred CCC------CC-ccceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHH
Q psy14616 92 TGL------GS-KVGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 92 ~~~------~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~ 160 (174)
... ++ +.|...+. .+.++.+....++-+ |++| |++..++|||+ .|| ..|+|+.|+.+...+|++.+
T Consensus 258 ~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV--I~AT-NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IH 334 (406)
T COG1222 258 AKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV--IMAT-NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIH 334 (406)
T ss_pred cccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE--EEec-CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHH
Confidence 332 11 22321111 233455555556555 6666 99999999999 799 88999999999999999998
Q ss_pred hchhhhhhh
Q psy14616 161 LVKNERNEI 169 (174)
Q Consensus 161 l~~~~~~~~ 169 (174)
..+-...+-
T Consensus 335 trkM~l~~d 343 (406)
T COG1222 335 TRKMNLADD 343 (406)
T ss_pred hhhccCccC
Confidence 877655543
No 7
>KOG0730|consensus
Probab=99.86 E-value=6.4e-22 Score=159.78 Aligned_cols=160 Identities=26% Similarity=0.303 Sum_probs=119.3
Q ss_pred chHHHHHHHHHHHH--------HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh--
Q psy14616 3 GQLQARRAAGVVLG--------MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-- 72 (174)
Q Consensus 3 G~~~~~~~l~~~~~--------~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-- 72 (174)
|+|++|+.++.... +.+=|..|++++|||||||||||++|+++|.+.+++ |..+.+..++++++|+.+
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--FlsvkgpEL~sk~vGeSEr~ 515 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--FLSVKGPELFSKYVGESERA 515 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--eeeccCHHHHHHhcCchHHH
Confidence 59999988886553 334476788999999999999999999999999854 899999999999999988
Q ss_pred -----hhh-hhccCcEEEEEEeccCCCCCCccce-----eEEEeccchhhhccccccchhhhcccCCCCCCCHHhhc--c
Q psy14616 73 -----EET-EMIEGEVVEIQIERPATGLGSKVGK-----LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--R 139 (174)
Q Consensus 73 -----~~~-~~~~~~i~~~~id~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--R 139 (174)
+.+ ...|..++++|||.+....+.+.+. +.-....++......++.+ +|+| |++..+++++++ |
T Consensus 516 ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V--iAAT-NRpd~ID~ALlRPGR 592 (693)
T KOG0730|consen 516 IREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV--IAAT-NRPDMIDPALLRPGR 592 (693)
T ss_pred HHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE--Eecc-CChhhcCHHHcCCcc
Confidence 233 3347778889999873332111111 1111233444444445555 5555 999999999998 9
Q ss_pred e-eeEecCCCCHHHHHHHHHHHhchhhhh
Q psy14616 140 M-VIIPTQPYQDEEIQAILKIRLVKNERN 167 (174)
Q Consensus 140 ~-~~i~~~~~~~~e~~~il~~~l~~~~~~ 167 (174)
+ ++|+++.|+.+...+|++.++.+-...
T Consensus 593 lD~iiyVplPD~~aR~~Ilk~~~kkmp~~ 621 (693)
T KOG0730|consen 593 LDRIIYVPLPDLEARLEILKQCAKKMPFS 621 (693)
T ss_pred cceeEeecCccHHHHHHHHHHHHhcCCCC
Confidence 9 999999999999999999988664433
No 8
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.85 E-value=1.1e-20 Score=143.59 Aligned_cols=72 Identities=65% Similarity=1.071 Sum_probs=70.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
+|||++++.+...+.+++++|+..++++|+.||||||||.+|.++|++||.++||+.++++.+++.++.+++
T Consensus 41 ~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE 112 (450)
T COG1224 41 LVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTE 112 (450)
T ss_pred ccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999988
No 9
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.84 E-value=1.1e-20 Score=145.04 Aligned_cols=72 Identities=68% Similarity=1.058 Sum_probs=62.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
+|||.++++++..+.+++++|+..++.+||.||||||||.+|.++|++||.+.||+.++++.+++.++.+++
T Consensus 26 lVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE 97 (398)
T PF06068_consen 26 LVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE 97 (398)
T ss_dssp EES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH
T ss_pred ccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999888
No 10
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=3.5e-20 Score=137.10 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=102.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh----h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET----E 76 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (174)
+|||+++|+.+..+..+.+.......|+||+||||.||||+|..+|+++|.+ + ...++..... ..|.+ .
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~-k~tsGp~leK----~gDlaaiLt~ 100 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L-KITSGPALEK----PGDLAAILTN 100 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e-EecccccccC----hhhHHHHHhc
Confidence 5899999999999999999888788999999999999999999999999854 2 2333332221 11222 3
Q ss_pred hccCcE-EEEEEeccCCCCC------Cc-cceeEEE-eccchh--hhccccccchhhhcccCCCCCCCHHhhcce-eeEe
Q psy14616 77 MIEGEV-VEIQIERPATGLG------SK-VGKLTMK-TTEMET--SYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIP 144 (174)
Q Consensus 77 ~~~~~i-~~~~id~~~~~~~------~~-~~~~~~~-~~~~~~--~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~ 144 (174)
+.++.| +++||+++....+ .+ .+...+. ...-.. ..++++ |.++++| .+...+..+|++|| .+.+
T Consensus 101 Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp--FTLIGAT-Tr~G~lt~PLrdRFGi~~r 177 (332)
T COG2255 101 LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP--FTLIGAT-TRAGMLTNPLRDRFGIIQR 177 (332)
T ss_pred CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC--eeEeeec-cccccccchhHHhcCCeee
Confidence 345554 5568888722210 01 1111111 111111 123333 4447777 58889999999999 7788
Q ss_pred cCCCCHHHHHHHHHHHh
Q psy14616 145 TQPYQDEEIQAILKIRL 161 (174)
Q Consensus 145 ~~~~~~~e~~~il~~~l 161 (174)
+..|+.+|+.+|+++..
T Consensus 178 lefY~~~eL~~Iv~r~a 194 (332)
T COG2255 178 LEFYTVEELEEIVKRSA 194 (332)
T ss_pred eecCCHHHHHHHHHHHH
Confidence 99999999999999854
No 11
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.83 E-value=1.1e-19 Score=154.61 Aligned_cols=162 Identities=24% Similarity=0.348 Sum_probs=111.7
Q ss_pred CCchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS---------LEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------~~~~~ 70 (174)
++||+++++.+..+..... .+...+.+++|+||||||||++|+++|+.++.. +..++.+.... .+.+.
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~~~i~~~~~~~~~~i~g~~~~~~g~ 399 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--FVRFSLGGVRDEAEIRGHRRTYVGA 399 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--eEEEeCCCcccHHHHcCCCCceeCC
Confidence 5799999988776554332 233344589999999999999999999999854 55555433211 01111
Q ss_pred h----h---hhhhhccCcEEEEEEeccCCCC-CC----------ccceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616 71 T----E---EETEMIEGEVVEIQIERPATGL-GS----------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI 132 (174)
Q Consensus 71 ~----~---~~~~~~~~~i~~~~id~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 132 (174)
. . ..+....+.++++|+|++..+. ++ +.++..|.+.++....++++.+| |+|+ |....+
T Consensus 400 ~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~--I~Tt-N~~~~i 476 (775)
T TIGR00763 400 MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF--IATA-NSIDTI 476 (775)
T ss_pred CCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE--EEec-CCchhC
Confidence 0 0 1122234477888999985432 11 12233455555556667777777 7677 888999
Q ss_pred CHHhhcceeeEecCCCCHHHHHHHHHHHhchhhhh
Q psy14616 133 PIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERN 167 (174)
Q Consensus 133 ~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~~~ 167 (174)
+++|++||.+|.|++|+.+++.+|+++++.++.+.
T Consensus 477 ~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~ 511 (775)
T TIGR00763 477 PRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALE 511 (775)
T ss_pred CHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988665544
No 12
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.83 E-value=2.5e-19 Score=151.80 Aligned_cols=163 Identities=25% Similarity=0.365 Sum_probs=119.3
Q ss_pred CCchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hh--------hh
Q psy14616 1 MVGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EM--------NK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~--------~~ 70 (174)
.+|++.+|+++..+..... .+...+..++|+||||+|||++++.+|+.++.. +..++.+..... ++ +.
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~~i~~~~~~d~~~i~g~~~~~~g~ 401 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YVRMALGGVRDEAEIRGHRRTYIGS 401 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEEEcCCCCCHHHhccchhccCCC
Confidence 4799999988876665333 233345689999999999999999999999855 555554432110 11 11
Q ss_pred hh-------hhhhhccCcEEEEEEeccCCCC-C----------CccceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616 71 TE-------EETEMIEGEVVEIQIERPATGL-G----------SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI 132 (174)
Q Consensus 71 ~~-------~~~~~~~~~i~~~~id~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 132 (174)
.. ..+....+.++++|+|++.... + ++.++..|.+.++...+++++.+| |||+ |.. .+
T Consensus 402 ~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~--i~Ta-N~~-~i 477 (784)
T PRK10787 402 MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF--VATS-NSM-NI 477 (784)
T ss_pred CCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE--EEcC-CCC-CC
Confidence 00 0111223457888999984432 1 466788999999999999999999 8877 554 69
Q ss_pred CHHhhcceeeEecCCCCHHHHHHHHHHHhchhhhhhh
Q psy14616 133 PIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEI 169 (174)
Q Consensus 133 ~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~~~~~ 169 (174)
+++|++||.+|.|.+|+.+|+.+|+++++.++...+.
T Consensus 478 ~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~ 514 (784)
T PRK10787 478 PAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERN 514 (784)
T ss_pred CHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHh
Confidence 9999999999999999999999999999987665543
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=1.1e-19 Score=146.55 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=109.1
Q ss_pred CCchHHHHHHHHHHHHH-----HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh---
Q psy14616 1 MVGQLQARRAAGVVLGM-----IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE--- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-----~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~--- 72 (174)
|.|.+.+|+.+...... .+-|..+++++||+||||||||++|+++|..++ .++..++.+.+++.++++.+
T Consensus 230 vgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~~~l~~~~l~~~~vGese~~l 307 (489)
T CHL00195 230 IGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPLLRLDVGKLFGGIVGESESRM 307 (489)
T ss_pred hcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEEEhHHhcccccChHHHHH
Confidence 45888888776653322 223556679999999999999999999999998 56888888887777776654
Q ss_pred ----hhh-hhccCcEEEEEEeccCCCCC---CccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhc--ce-e
Q psy14616 73 ----EET-EMIEGEVVEIQIERPATGLG---SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--RM-V 141 (174)
Q Consensus 73 ----~~~-~~~~~~i~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--R~-~ 141 (174)
..+ ...|+.++++|+|+++.+.. +......+....+....+....++ .++|+ |++..+++++++ || .
T Consensus 308 ~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~-vIaTT-N~~~~Ld~allR~GRFD~ 385 (489)
T CHL00195 308 RQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF-VVATA-NNIDLLPLEILRKGRFDE 385 (489)
T ss_pred HHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE-EEEec-CChhhCCHHHhCCCcCCe
Confidence 222 23467788899998855321 111111111111111112222333 15555 899999999985 99 8
Q ss_pred eEecCCCCHHHHHHHHHHHhchh
Q psy14616 142 IIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 142 ~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+++++.|+.++..+|++.++.+.
T Consensus 386 ~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 386 IFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred EEEeCCcCHHHHHHHHHHHHhhc
Confidence 89999999999999999988664
No 14
>KOG0734|consensus
Probab=99.79 E-value=8.1e-20 Score=144.91 Aligned_cols=162 Identities=23% Similarity=0.303 Sum_probs=117.3
Q ss_pred CCchHHHHHHHHHHHHHHHh--------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKE--------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~--------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++|++++.+.+++++ |++| +++||.||||||||.|||++|-+.+ ++|....++.+-.++++.--
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLP-KGVLLvGPPGTGKTlLARAvAGEA~--VPFF~~sGSEFdEm~VGvGA 382 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLP-KGVLLVGPPGTGKTLLARAVAGEAG--VPFFYASGSEFDEMFVGVGA 382 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCC-CceEEeCCCCCchhHHHHHhhcccC--CCeEeccccchhhhhhcccH
Confidence 46899999999999999986 5655 9999999999999999999999888 77888887776555554322
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCC-Ccc----ceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh--
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLG-SKV----GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL-- 137 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~-- 137 (174)
..+ ...|+.|+++|||.+..+.. .+. |.+.=...+++.+......++ |++| |.+..++++|.
T Consensus 383 rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv--igAT-Nfpe~LD~AL~RP 459 (752)
T KOG0734|consen 383 RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV--IGAT-NFPEALDKALTRP 459 (752)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE--Eecc-CChhhhhHHhcCC
Confidence 222 33588899999998844431 111 111101112233332234444 5555 99999999999
Q ss_pred cce-eeEecCCCCHHHHHHHHHHHhchhhhhh
Q psy14616 138 DRM-VIIPTQPYQDEEIQAILKIRLVKNERNE 168 (174)
Q Consensus 138 sR~-~~i~~~~~~~~e~~~il~~~l~~~~~~~ 168 (174)
.|| ..|.++.|+..=..+||..++.+....+
T Consensus 460 GRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~ 491 (752)
T KOG0734|consen 460 GRFDRHVTVPLPDVRGRTEILKLYLSKIPLDE 491 (752)
T ss_pred CccceeEecCCCCcccHHHHHHHHHhcCCccc
Confidence 799 8899999998889999999998766554
No 15
>KOG0733|consensus
Probab=99.79 E-value=3.8e-19 Score=142.89 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=113.9
Q ss_pred chHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhh
Q psy14616 3 GQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEE 74 (174)
Q Consensus 3 G~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (174)
|+++++.+|.....+- +-|..++.++|||||||||||.+|+++|.+.+ ..|+.+.+-.++.+|+|+.+-.
T Consensus 515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag--~NFisVKGPELlNkYVGESErA 592 (802)
T KOG0733|consen 515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG--ANFISVKGPELLNKYVGESERA 592 (802)
T ss_pred cHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc--CceEeecCHHHHHHHhhhHHHH
Confidence 4788887766544221 23666689999999999999999999999998 4489999999999999998722
Q ss_pred h--------hhccCcEEEEEEeccCCCCCCccce--eEEEe---ccchhhhccccccchhhhcccCCCCCCCHHhh--cc
Q psy14616 75 T--------EMIEGEVVEIQIERPATGLGSKVGK--LTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DR 139 (174)
Q Consensus 75 ~--------~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR 139 (174)
. ...|+.|+++|+|.+....+++... -.+.. .+++...+...+.+ |++| |+|..++|+++ .|
T Consensus 593 VR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~v--iaAT-NRPDiIDpAiLRPGR 669 (802)
T KOG0733|consen 593 VRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYV--IAAT-NRPDIIDPAILRPGR 669 (802)
T ss_pred HHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEE--Eeec-CCCcccchhhcCCCc
Confidence 1 2248899999999996665433221 11111 22333333344444 5555 99999999999 79
Q ss_pred e-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 140 M-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 140 ~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
+ ..+++..|+.+|...||+....
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhc
Confidence 9 7888889999999999998775
No 16
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=3.3e-19 Score=142.37 Aligned_cols=148 Identities=21% Similarity=0.211 Sum_probs=92.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----------------------eee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----------------------TSM 58 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----------------------~~~ 58 (174)
||||+++. ..+..++++++.+ +.+||+||||||||++|+++|+.++|..+. ..+
T Consensus 20 vVGQe~iv---~~L~~~i~~~ri~-ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 20 VIHQDLAI---GALQNALKSGKIG-HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred HhChHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence 68999999 4566667888865 779999999999999999999999875321 111
Q ss_pred cccccc-hhhhhhhhhhhhhc--cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC
Q psy14616 59 AGSEIY-SLEMNKTEEETEMI--EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG 131 (174)
Q Consensus 59 ~~~~~~-~~~~~~~~~~~~~~--~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 131 (174)
+...-. ..++..+.+..... .+ .++++|+|.+ +. +.++..++..+ +- .+.+| |.++ +.+..
T Consensus 96 daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-s~---~A~NALLKtLE-----EPp~~viF--ILaT-te~~k 163 (484)
T PRK14956 96 DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-TD---QSFNALLKTLE-----EPPAHIVF--ILAT-TEFHK 163 (484)
T ss_pred chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-CH---HHHHHHHHHhh-----cCCCceEE--Eeec-CChhh
Confidence 111000 00111111111111 12 3555677766 33 22222222111 11 23444 4444 46789
Q ss_pred CCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++++++|||+.+.|.+++.+++.+++++...++
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999876543
No 17
>KOG2028|consensus
Probab=99.79 E-value=1e-18 Score=133.59 Aligned_cols=149 Identities=18% Similarity=0.263 Sum_probs=104.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhhhhhhh--
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTEEETEM-- 77 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 77 (174)
+|||+++...-..+...+++++.| .++|+||||||||++|+.++.-... ...|+.++...--..++..+.+.+..
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~ 217 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQNRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEK 217 (554)
T ss_pred hcchhhhcCcchHHHHHHHcCCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHH
Confidence 589999998888899999999998 9999999999999999999986532 23467777665555555555433321
Q ss_pred -ccCcEEEEEEecc--CCCCCCccceeEEEeccchhhhccccccchhh-hcccCCCCCCCHHhhcceeeEecCCCCHHHH
Q psy14616 78 -IEGEVVEIQIERP--ATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI-GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 153 (174)
Q Consensus 78 -~~~~i~~~~id~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~ 153 (174)
+-++-.+++||++ |++ .+|..++--. .-+...+ | |||.|+...++.+|+|||.++.+.+++.+++
T Consensus 218 ~l~krkTilFiDEiHRFNk---sQQD~fLP~V------E~G~I~l--IGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNK---SQQDTFLPHV------ENGDITL--IGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred hhhcceeEEEeHHhhhhhh---hhhhccccee------ccCceEE--EecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 2333444445544 355 3333322211 1112222 3 4666777999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy14616 154 QAILKIRLV 162 (174)
Q Consensus 154 ~~il~~~l~ 162 (174)
..||.+.+.
T Consensus 287 ~~iL~raia 295 (554)
T KOG2028|consen 287 VTILMRAIA 295 (554)
T ss_pred HHHHHHHHH
Confidence 999999543
No 18
>KOG0733|consensus
Probab=99.78 E-value=1.1e-18 Score=140.39 Aligned_cols=155 Identities=24% Similarity=0.255 Sum_probs=109.0
Q ss_pred chHHHHHHHHHHHHHHH-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh---
Q psy14616 3 GQLQARRAAGVVLGMIK-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE--- 72 (174)
Q Consensus 3 G~~~~~~~l~~~~~~~~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~--- 72 (174)
|.+.....+..+...++ -|..|++++||+||||||||.+|+++|.+++ ++|..+++.++++-..|+.+
T Consensus 194 G~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf~~isApeivSGvSGESEkki 271 (802)
T KOG0733|consen 194 GLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPFLSISAPEIVSGVSGESEKKI 271 (802)
T ss_pred ChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--CceEeecchhhhcccCcccHHHH
Confidence 45666655555554444 3777899999999999999999999999999 78999999888887766666
Q ss_pred ----hhh-hhccCcEEEEEEeccCCCCCCccc----e-----eEEEeccchhhhccccccchhhhcccCCCCCCCHHhh-
Q psy14616 73 ----EET-EMIEGEVVEIQIERPATGLGSKVG----K-----LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL- 137 (174)
Q Consensus 73 ----~~~-~~~~~~i~~~~id~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~- 137 (174)
+.+ ...|+.++++|||.+..+.+..+. . +...+.-.....+-.++++ |++| |+|..++|+|+
T Consensus 272 RelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlV--IgAT-nRPDslDpaLRR 348 (802)
T KOG0733|consen 272 RELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLV--IGAT-NRPDSLDPALRR 348 (802)
T ss_pred HHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEE--EecC-CCCcccCHHHhc
Confidence 223 335888999999998655422111 0 1111110000001123344 5666 99999999999
Q ss_pred -cce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 138 -DRM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 138 -sR~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
.|| ..|-+.-|++.+..+||+....
T Consensus 349 aGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 349 AGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred cccccceeeecCCchHHHHHHHHHHHh
Confidence 799 7888988999999999988654
No 19
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=7.4e-19 Score=145.21 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=93.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------- 65 (174)
||||++++ ..+.+.+++|+.+ +.+||+||+|||||++|+.+|+.++|........|+.|..
T Consensus 18 ivGQe~vv---~~L~~~l~~~rl~-hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 18 VVGQEHVL---TALANALDLGRLH-HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 68999999 5566677888876 7789999999999999999999998853211112222210
Q ss_pred --------hhhhhhhhhhhhc--cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCC
Q psy14616 66 --------LEMNKTEEETEMI--EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPH 130 (174)
Q Consensus 66 --------~~~~~~~~~~~~~--~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~ 130 (174)
.++..+.+..... .| .++++|+|.+ +. ..++..++ +...+ ++.| |.++ +++.
T Consensus 94 daas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-s~---~a~NALLK------tLEEPp~~v~F--IL~T-t~~~ 160 (647)
T PRK07994 94 DAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-SR---HSFNALLK------TLEEPPEHVKF--LLAT-TDPQ 160 (647)
T ss_pred cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-CH---HHHHHHHH------HHHcCCCCeEE--EEec-CCcc
Confidence 1111111111111 12 3455677766 33 22332222 22222 2334 3344 4677
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++++++|||+.++|.+++.+++.+.|+..+..+
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999876443
No 20
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=4.6e-19 Score=145.20 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=93.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe-----eeeccccc------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF-----TSMAGSEI------------ 63 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~-----~~~~~~~~------------ 63 (174)
||||++++ ..+.+++++++.+ |.+||+||+|||||++|+.+|+.++|..+- ..-.|+.|
T Consensus 18 VIGQe~vv---~~L~~al~~gRLp-HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 18 LVGQEHVV---RALTHALEQQRLH-HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HcCcHHHH---HHHHHHHHhCCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 69999999 5666667888876 778999999999999999999999873210 00011111
Q ss_pred --chh---------hhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcc
Q psy14616 64 --YSL---------EMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTA 125 (174)
Q Consensus 64 --~~~---------~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ 125 (174)
+.. ++.++.+..... ...++++|.|.+ +. ..++..++ +.+. .++.| |.++
T Consensus 94 DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-s~---~AaNALLK------TLEEPP~~v~F--ILaT 161 (700)
T PRK12323 94 DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-TN---HAFNAMLK------TLEEPPEHVKF--ILAT 161 (700)
T ss_pred cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-CH---HHHHHHHH------hhccCCCCceE--EEEe
Confidence 110 011111111111 124555677766 33 22332222 2222 23344 4444
Q ss_pred cCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 126 YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 126 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+.+..++++++|||+.+.|..++.+++.++|++.+.++
T Consensus 162 -tep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 162 -TDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred -CChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999999876543
No 21
>KOG0989|consensus
Probab=99.77 E-value=4.8e-19 Score=132.25 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=90.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----eeecccccchhhhhhhh--hh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----TSMAGSEIYSLEMNKTE--EE 74 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~ 74 (174)
++||++++ ..+.+.+..+..| ++|||||||||||++|+++|++|+++..+ ...+.++..+..+.... +-
T Consensus 38 ~~gQe~vV---~~L~~a~~~~~lp--~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~f 112 (346)
T KOG0989|consen 38 LAGQEHVV---QVLKNALLRRILP--HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNF 112 (346)
T ss_pred hcchHHHH---HHHHHHHhhcCCc--eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCH
Confidence 57999999 4555555555555 99999999999999999999999874322 22233332222211111 11
Q ss_pred hhh---------c---c-CcEEEEEEeccCCCCCCccceeEEEeccchhhh-ccc-cccchhhhcccCCCCCCCHHhhcc
Q psy14616 75 TEM---------I---E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSY-DLG-AKMIEAIGTAYSSPHGIPIDLLDR 139 (174)
Q Consensus 75 ~~~---------~---~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~l~~~l~sR 139 (174)
+.+ . + ..++++|-|.+.+.. +.. +..+. +.+ ++.| +.-+|..+.+++++.||
T Consensus 113 akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsda----q~a------Lrr~mE~~s~~trF---iLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 113 AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDA----QAA------LRRTMEDFSRTTRF---ILICNYLSRIIRPLVSR 179 (346)
T ss_pred HHHhhccccccCCCCCcceEEEEechhhhhHHH----HHH------HHHHHhccccceEE---EEEcCChhhCChHHHhh
Confidence 111 0 1 234555666663321 111 11111 222 2333 23336788999999999
Q ss_pred eeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 140 MVIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 140 ~~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
|+.+.|+++.++++.+.|+..-.++.
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~ 205 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEG 205 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhC
Confidence 99999999999999998888765543
No 22
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.77 E-value=1.5e-18 Score=141.49 Aligned_cols=159 Identities=22% Similarity=0.301 Sum_probs=107.7
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
|+|+++++..+..+...++. |..+++++||+||||||||++|+++|..++ .+++.++.+.+.+...+...
T Consensus 57 i~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~~~~g~~~~ 134 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVEMFVGVGAS 134 (495)
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCeeeccHHHHHHHHhcccHH
Confidence 57999999888887776653 344568999999999999999999999987 55777777666554443322
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCCc--cce---eEEEe---ccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGSK--VGK---LTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~~--~~~---~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
..+ ...|+.++++|+|.+....+.. ... ..... ..++......+.++ |++| |++..++++++
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v--I~aT-n~~~~ld~al~ 211 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV--IAAT-NRPDVLDPALL 211 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE--EEec-CChhhcCHHHh
Confidence 222 2346778889999884332110 000 00000 11111112223334 5666 89999999999
Q ss_pred c--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 138 D--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+ || ..++++.|+.++..+|++.++.+.
T Consensus 212 r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~ 241 (495)
T TIGR01241 212 RPGRFDRQVVVDLPDIKGREEILKVHAKNK 241 (495)
T ss_pred cCCcceEEEEcCCCCHHHHHHHHHHHHhcC
Confidence 6 88 789999999999999999987554
No 23
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=8.9e-19 Score=147.50 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=91.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc-----------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI----------------- 63 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~----------------- 63 (174)
||||++++ ..|.+++..++.+ +.+||+||||||||++|+++|+.++|........|+.|
T Consensus 18 IIGQe~Iv---~~LknaI~~~rl~-HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 18 MVGQSHVL---HALTNALTQQRLH-HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred hcCcHHHH---HHHHHHHHhCCCC-eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 68999999 5566777888876 67799999999999999999999987521100011111
Q ss_pred -----c-hhhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616 64 -----Y-SLEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH 130 (174)
Q Consensus 64 -----~-~~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~ 130 (174)
. ..++..+.+.....+ | .++++|+|.+ +. ..++..++ +... + +..| |.++ +...
T Consensus 94 dAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-T~---eAqNALLK------tLEEPP~~vrF--ILaT-Te~~ 160 (944)
T PRK14949 94 DAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-SR---SSFNALLK------TLEEPPEHVKF--LLAT-TDPQ 160 (944)
T ss_pred ccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-CH---HHHHHHHH------HHhccCCCeEE--EEEC-CCch
Confidence 0 011111111111111 2 3455566666 32 22222222 2222 2 2333 3344 4667
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.++++++|||++++|.+++.+++.+.|++.+..
T Consensus 161 kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999999999987654
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=4.4e-19 Score=147.06 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=91.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch--------------h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------L 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------~ 66 (174)
||||+++++ .+.+++++++.+ |.+||+||+|||||++++++|+.++|+.......|+.|.+ .
T Consensus 18 VIGQe~Vv~---~L~~aL~~gRL~-HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 18 LVGQEHVVR---ALTHALDGGRLH-HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HcCcHHHHH---HHHHHHhcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 689999995 555566788765 7789999999999999999999998753221112221110 0
Q ss_pred ---------hhhhhhhhhhhc----c-CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616 67 ---------EMNKTEEETEMI----E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH 130 (174)
Q Consensus 67 ---------~~~~~~~~~~~~----~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~ 130 (174)
++..+.+..... . ..++++|+|.+ +. ..++.. ..+.+. + +..| |.++ +...
T Consensus 94 DAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-T~---~A~NAL------LKtLEEPP~~v~F--ILaT-td~~ 160 (830)
T PRK07003 94 DAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-TN---HAFNAM------LKTLEEPPPHVKF--ILAT-TDPQ 160 (830)
T ss_pred cccccccHHHHHHHHHHHHhccccCCceEEEEeChhhC-CH---HHHHHH------HHHHHhcCCCeEE--EEEE-CChh
Confidence 000000111001 1 12344566655 22 112221 112222 2 3444 4455 5788
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++++|+|||+.|.|.+++.+++.++|++.+.++
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999977554
No 25
>KOG0731|consensus
Probab=99.77 E-value=1e-18 Score=144.72 Aligned_cols=161 Identities=23% Similarity=0.297 Sum_probs=119.6
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
|.|.+++++.|..+.+++++ |-..|+++||+||||||||.||+++|-+.| +||+.++++++..+..+.-.
T Consensus 313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--VPF~svSGSEFvE~~~g~~as 390 (774)
T KOG0731|consen 313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSVSGSEFVEMFVGVGAS 390 (774)
T ss_pred ccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--CceeeechHHHHHHhcccchH
Confidence 57999999999999999987 444579999999999999999999999998 88999999988877665521
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCC---C-----c-cceeEEEeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLG---S-----K-VGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~---~-----~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
..+ ...|..++++|||......+ . + .+.+.=....++.......+++ +|+| |++..++++|
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~--~a~t-nr~d~ld~al 467 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIV--LAAT-NRPDILDPAL 467 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEE--Eecc-CCccccCHHh
Confidence 111 33477888899998732221 0 0 0111001122333333344555 5666 9999999999
Q ss_pred h--cce-eeEecCCCCHHHHHHHHHHHhchhhh
Q psy14616 137 L--DRM-VIIPTQPYQDEEIQAILKIRLVKNER 166 (174)
Q Consensus 137 ~--sR~-~~i~~~~~~~~e~~~il~~~l~~~~~ 166 (174)
+ .|| ..|+++.|+.....+|+..++.+...
T Consensus 468 lrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~ 500 (774)
T KOG0731|consen 468 LRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL 500 (774)
T ss_pred cCCCccccceeccCCchhhhHHHHHHHhhccCC
Confidence 9 899 88999999999999999999877665
No 26
>KOG0738|consensus
Probab=99.77 E-value=5.7e-19 Score=135.53 Aligned_cols=161 Identities=21% Similarity=0.239 Sum_probs=117.2
Q ss_pred CCchHHHHHHHHHHH-------HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVL-------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~-------~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|+|.+++|+.|.... ++.+..+.|=+++|++||||||||.||+++|-+.+ ..|..++.+.+.+++-|+.+.
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~--tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG--TTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc--CeEEEechhhhhhhhccchHH
Confidence 578889997766533 44556666778999999999999999999999998 558888999999988888773
Q ss_pred h-------hhh-ccCcEEEEEEeccCCCCCCc---cceeEEEeccchhhh------ccccccchhhhcccCCCCCCCHHh
Q psy14616 74 E-------TEM-IEGEVVEIQIERPATGLGSK---VGKLTMKTTEMETSY------DLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 74 ~-------~~~-~~~~i~~~~id~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
. +.. .|.-|+++|||.+.+..+.+ +..-.++...+.+.. +....+| +.+++|-|=.|+++|
T Consensus 292 lvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~Vm--VLAATN~PWdiDEAl 369 (491)
T KOG0738|consen 292 LVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVM--VLAATNFPWDIDEAL 369 (491)
T ss_pred HHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEE--EEeccCCCcchHHHH
Confidence 3 222 37788889999985554322 122334433322222 2244566 345559999999999
Q ss_pred hcce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 137 LDRM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 137 ~sR~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
++|| ..|+++-|+.+....+++..+..-.
T Consensus 370 rRRlEKRIyIPLP~~~~R~~Li~~~l~~~~ 399 (491)
T KOG0738|consen 370 RRRLEKRIYIPLPDAEARSALIKILLRSVE 399 (491)
T ss_pred HHHHhhheeeeCCCHHHHHHHHHHhhcccc
Confidence 9999 7888888999999988888775433
No 27
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.76 E-value=2.9e-18 Score=138.52 Aligned_cols=160 Identities=22% Similarity=0.247 Sum_probs=102.1
Q ss_pred CCchHHHHHHHHHHHHH--------HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC--------CCeeeecccccc
Q psy14616 1 MVGQLQARRAAGVVLGM--------IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD--------TPFTSMAGSEIY 64 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~--------~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~--------~~~~~~~~~~~~ 64 (174)
|.|++..++.+...... -+-|..+++++|||||||||||++|+++|+.++.. ..|..+....+.
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl 263 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELL 263 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhc
Confidence 45788888666654432 12355667899999999999999999999998643 223444444455
Q ss_pred hhhhhhhhh-------hhhh-----ccCcEEEEEEeccCCCCCCccce---eEEE---eccchhhhccccccchhhhccc
Q psy14616 65 SLEMNKTEE-------ETEM-----IEGEVVEIQIERPATGLGSKVGK---LTMK---TTEMETSYDLGAKMIEAIGTAY 126 (174)
Q Consensus 65 ~~~~~~~~~-------~~~~-----~~~~i~~~~id~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~i~~~~ 126 (174)
+.+.+..+. .+.. .+..++++|+|.++...+..... ..+. ...++......+.++ |++|
T Consensus 264 ~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV--I~AT- 340 (512)
T TIGR03689 264 NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV--IGAS- 340 (512)
T ss_pred ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE--Eecc-
Confidence 544444331 1111 35567888999875432111000 0000 011222222344444 5666
Q ss_pred CCCCCCCHHhhc--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 127 SSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 127 ~~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
|++..++|++++ || ..|+|+.|+.++..+|++.++.+
T Consensus 341 N~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 341 NREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 899999999997 99 78999999999999999998754
No 28
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=2.4e-18 Score=129.72 Aligned_cols=161 Identities=20% Similarity=0.218 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcC---CceEEEEcCCCCcHHHHHHHHHHHhC-----CCCCeeeecccccch
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIA---GRAILLAGQPGTGKTAIAMGLAQALG-----PDTPFTSMAGSEIYS 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~---~~~~ll~GppG~GKT~la~~la~~l~-----~~~~~~~~~~~~~~~ 65 (174)
+||++++|+++..+..+++. |..+ ..+++|+||||||||++|+++|+.+. ....++.+++.++.+
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~ 87 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVG 87 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhh
Confidence 58999999999887766632 3221 35899999999999999999998762 123455566666555
Q ss_pred hhhhhhhhh-h----hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC----CCCCCCHHh
Q psy14616 66 LEMNKTEEE-T----EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS----SPHGIPIDL 136 (174)
Q Consensus 66 ~~~~~~~~~-~----~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~l 136 (174)
.+.++.... . ....+.++++|+|.+..+.+.+.+.- .....+....+....++. +++... ....++|++
T Consensus 88 ~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~-~i~~Ll~~~e~~~~~~~v-ila~~~~~~~~~~~~~p~L 165 (261)
T TIGR02881 88 EYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKE-AIDTLVKGMEDNRNEFVL-ILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred hhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHH-HHHHHHHHHhccCCCEEE-EecCCcchhHHHHhcChHH
Confidence 554443311 1 12245667778887732211010000 000001111111222211 222211 123478999
Q ss_pred hcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 137 LDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 137 ~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
++|| ..++|++|+.+++.+++++.+..
T Consensus 166 ~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 166 RSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred HhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 9999 78999999999999999987754
No 29
>KOG0739|consensus
Probab=99.75 E-value=1.4e-18 Score=129.72 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=112.5
Q ss_pred CCchHHHHHHHHHHH-------HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVL-------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~-------~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|.|.|.++++|.... .+...++.|-+++||||||||||++||+++|-+.| ..|..++.+++.+.++++.+.
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--CceEEeehHHHHHHHhccHHH
Confidence 468888996665422 33344555668999999999999999999999998 568999999999999999883
Q ss_pred hh--------hhccCcEEEEEEeccCCCC-CC-ccceeEEEeccchhhhccc----cccchhhhcccCCCCCCCHHhhcc
Q psy14616 74 ET--------EMIEGEVVEIQIERPATGL-GS-KVGKLTMKTTEMETSYDLG----AKMIEAIGTAYSSPHGIPIDLLDR 139 (174)
Q Consensus 74 ~~--------~~~~~~i~~~~id~~~~~~-~~-~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~l~~~l~sR 139 (174)
.. +..|..|+++|||.+.... +. +......++.++.+....+ .+++ ++++ |-|-.++.++++|
T Consensus 213 LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV--LgAT-NiPw~LDsAIRRR 289 (439)
T KOG0739|consen 213 LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV--LGAT-NIPWVLDSAIRRR 289 (439)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE--EecC-CCchhHHHHHHHH
Confidence 22 3457889999999873222 11 1222344444433333332 2333 4555 8999999999999
Q ss_pred e-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 140 M-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 140 ~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
| ..|+++-|+......+.+.++.+
T Consensus 290 FekRIYIPLPe~~AR~~MF~lhlG~ 314 (439)
T KOG0739|consen 290 FEKRIYIPLPEAHARARMFKLHLGD 314 (439)
T ss_pred hhcceeccCCcHHHhhhhheeccCC
Confidence 9 78888888887777777766543
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=6e-18 Score=143.63 Aligned_cols=159 Identities=25% Similarity=0.344 Sum_probs=110.6
Q ss_pred CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|++.+++.+.....+- +-|..+++++|||||||||||++|+++|.+++ .+|+.+.+.++.+.++++.+
T Consensus 455 i~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~fi~v~~~~l~~~~vGese 532 (733)
T TIGR01243 455 IGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANFIAVRGPEILSKWVGESE 532 (733)
T ss_pred cccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHhhcccCcHH
Confidence 578999998877655431 12555678999999999999999999999998 45888888888887777665
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCCcccee---EEEe---ccchhhhccccccchhhhcccCCCCCCCHHhhc
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGSKVGKL---TMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD 138 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s 138 (174)
. .+ ...++.++++|+|.+....+.....- .+.. ..++......+.++ |++| |++..+++++++
T Consensus 533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v--I~aT-n~~~~ld~allR 609 (733)
T TIGR01243 533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV--IAAT-NRPDILDPALLR 609 (733)
T ss_pred HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE--EEeC-CChhhCCHhhcC
Confidence 2 22 22356788899998854332111100 0001 11222222334444 5666 899999999995
Q ss_pred --ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 139 --RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 139 --R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
|| ..++++.|+.++..+|++.+..+.
T Consensus 610 pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~ 638 (733)
T TIGR01243 610 PGRFDRLILVPPPDEEARKEIFKIHTRSM 638 (733)
T ss_pred CCccceEEEeCCcCHHHHHHHHHHHhcCC
Confidence 99 889999999999999998876543
No 31
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4.7e-18 Score=133.61 Aligned_cols=148 Identities=23% Similarity=0.217 Sum_probs=90.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc----------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY---------------- 64 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~---------------- 64 (174)
||||++++ ..+.++++.++.+ |.++|+||||+|||++|+++|+.++|......-.++.|.
T Consensus 18 iiGq~~~~---~~l~~~~~~~~~~-h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 18 IIGQKHIV---TAISNGLSLGRIH-HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred ccChHHHH---HHHHHHHHcCCCC-eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 68999999 4556666788765 778999999999999999999999764321111111110
Q ss_pred -------hhhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccCCCCC
Q psy14616 65 -------SLEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHG 131 (174)
Q Consensus 65 -------~~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 131 (174)
..++....+.....| ..++++|+|.+ +. ..++..++. ..+.+ +..| |.++ +....
T Consensus 94 ~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-~~---~a~naLLk~-----lEe~~~~~~f--Il~t-~~~~~ 161 (363)
T PRK14961 94 DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-SR---HSFNALLKT-----LEEPPQHIKF--ILAT-TDVEK 161 (363)
T ss_pred cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-CH---HHHHHHHHH-----HhcCCCCeEE--EEEc-CChHh
Confidence 011111111111111 13555666665 22 112211111 11112 2233 3344 45677
Q ss_pred CCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+.++++|||+.++|.+++.+++.++++..+.++
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~ 194 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKE 194 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999876553
No 32
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7e-18 Score=137.65 Aligned_cols=158 Identities=24% Similarity=0.298 Sum_probs=112.4
Q ss_pred CchHHHHHHHHHHHHHHH--------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 2 VGQLQARRAAGVVLGMIK--------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~--------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
.|.+.++..+........ .+..++.++||+||||||||++|+++|..++ .+|+.+..+++.+.++++++.
T Consensus 245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 245 GGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred hcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCHHHhccccchHHH
Confidence 356666655554443221 1556678999999999999999999999888 558888888999999998872
Q ss_pred -------hh-hhccCcEEEEEEeccCCCCCCccc-e-eEEEec---cchhhhccccccchhhhcccCCCCCCCHHhhc--
Q psy14616 74 -------ET-EMIEGEVVEIQIERPATGLGSKVG-K-LTMKTT---EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD-- 138 (174)
Q Consensus 74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~-~-~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s-- 138 (174)
.+ ...|+.++++|+|.+.+..+.... . ...... .+.......++.+ |++| |++..+++++++
T Consensus 323 ~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v--i~aT-N~p~~ld~a~lR~g 399 (494)
T COG0464 323 NIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV--IAAT-NRPDDLDPALLRPG 399 (494)
T ss_pred HHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE--EecC-CCccccCHhhcccC
Confidence 23 245788999999998555422111 0 111111 1222223334333 5555 999999999999
Q ss_pred ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 139 RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 139 R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
|| .++++++|+.++..+|++.++...
T Consensus 400 Rfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 400 RFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred ccceEeecCCCCHHHHHHHHHHHhccc
Confidence 99 899999999999999999998743
No 33
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.8e-18 Score=140.63 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=92.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-------------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------- 66 (174)
||||++++ ..+.+++++++.+ +.+||+||||||||++|+++|+.++|........|+.|..+
T Consensus 18 ivGq~~v~---~~L~~~~~~~~l~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 18 VIGQAPVV---RALSNALDQQYLH-HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred hcCCHHHH---HHHHHHHHhCCCC-eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 68999999 5566666888876 77899999999999999999999987532221222222110
Q ss_pred ---------hhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616 67 ---------EMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH 130 (174)
Q Consensus 67 ---------~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~ 130 (174)
++....+.....+ + .++++|+|.+ +. +..+. +..+... + ++.| |.++ +++.
T Consensus 94 daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-s~---~a~na------LLk~LEepp~~~~f--Ilat-td~~ 160 (509)
T PRK14958 94 DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-SG---HSFNA------LLKTLEEPPSHVKF--ILAT-TDHH 160 (509)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-CH---HHHHH------HHHHHhccCCCeEE--EEEE-CChH
Confidence 0111111111111 1 3444566655 32 12221 1112222 2 3334 3344 4678
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
.++++++|||++++|.+++.+++.+.++..+.++.
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999888776543
No 34
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.74 E-value=8.6e-18 Score=133.15 Aligned_cols=160 Identities=24% Similarity=0.235 Sum_probs=104.9
Q ss_pred CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.++.++.+....... .-|..++.++||+||||||||++|+++|+.++. +++.++++.+...+.+...
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~~i~v~~~~l~~~~~g~~~ 210 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TFIRVVGSELVQKFIGEGA 210 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--CEEEeehHHHhHhhccchH
Confidence 468888887766654331 124456789999999999999999999999984 4778887777665555433
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCCcc------ceeEEE--eccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGSKV------GKLTMK--TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
+.+ ...++.++++++|.++....+.. ....+. ...+.......+..+ |+++ |++..+++++
T Consensus 211 ~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V--I~aT-n~~~~ld~al 287 (389)
T PRK03992 211 RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI--IAAT-NRIDILDPAI 287 (389)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE--EEec-CChhhCCHHH
Confidence 111 22356778889998743321110 000000 000111112223334 6666 8889999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
++ || ..|++++|+.++..+|++.++.+..
T Consensus 288 lRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~ 319 (389)
T PRK03992 288 LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN 319 (389)
T ss_pred cCCccCceEEEECCCCHHHHHHHHHHHhccCC
Confidence 85 89 7899999999999999998875543
No 35
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.74 E-value=4.9e-18 Score=134.13 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=87.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc--------CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc--------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI--------AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY-------- 64 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~--------~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~-------- 64 (174)
|+||+++++. +.+++++++. .++.+||+||||+|||++|+.+|+.+.|.... ...|+.|.
T Consensus 7 IiGq~~~~~~---L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 7 LVGQEAVVAE---LRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRACRTVLAG 82 (394)
T ss_pred ccChHHHHHH---HHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhcC
Confidence 6899999955 5555566541 24789999999999999999999999775310 00111110
Q ss_pred ----------------hhhhhhhhhhhhhcc----C-cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhh
Q psy14616 65 ----------------SLEMNKTEEETEMIE----G-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIG 123 (174)
Q Consensus 65 ----------------~~~~~~~~~~~~~~~----~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 123 (174)
-.++....+.....| . .++++++|++ +. ..++..++.. +.. -.+.+| |.
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-~~---~aanaLLk~L--Eep--~~~~~f--IL 152 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-TE---RAANALLKAV--EEP--PPRTVW--LL 152 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-CH---HHHHHHHHHh--hcC--CCCCeE--EE
Confidence 011111112111112 1 3556677777 33 2222222211 100 123334 44
Q ss_pred cccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHH
Q psy14616 124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 159 (174)
Q Consensus 124 ~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 159 (174)
++ +.+..++|+++|||+.++|.+++.+++.++|..
T Consensus 153 ~a-~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 153 CA-PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred EE-CChHHChHHHHhhCeEEECCCCCHHHHHHHHHH
Confidence 44 347899999999999999999999999999875
No 36
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.74 E-value=2.8e-17 Score=126.44 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=93.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh-hhhh-c
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE-ETEM-I 78 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 78 (174)
+|||+++++.+..+..........+.+++|+||||||||++|+++|+.++... .......... ...... .... .
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~--~~~~~~~~~~--~~~l~~~l~~~~~ 81 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL--KITSGPALEK--PGDLAAILTNLEE 81 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE--EEeccchhcC--chhHHHHHHhccc
Confidence 68999999888777765555444457899999999999999999999998552 2222211110 001111 0111 2
Q ss_pred cCcEEEEEEeccCCCCC--------CccceeEEEeccchhh--hccccccchhhhcccCCCCCCCHHhhcce-eeEecCC
Q psy14616 79 EGEVVEIQIERPATGLG--------SKVGKLTMKTTEMETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQP 147 (174)
Q Consensus 79 ~~~i~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~ 147 (174)
...++++|+|.+..... +....+.+........ ...++..+ ++++ +.+..++++++||| .++.+.+
T Consensus 82 ~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l--i~~t-~~~~~l~~~l~sR~~~~~~l~~ 158 (305)
T TIGR00635 82 GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL--VGAT-TRAGMLTSPLRDRFGIILRLEF 158 (305)
T ss_pred CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE--EEec-CCccccCHHHHhhcceEEEeCC
Confidence 33556677776622110 0000111111110111 12233333 5555 56678999999999 6789999
Q ss_pred CCHHHHHHHHHHHhc
Q psy14616 148 YQDEEIQAILKIRLV 162 (174)
Q Consensus 148 ~~~~e~~~il~~~l~ 162 (174)
|+.+++.+++++...
T Consensus 159 l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 159 YTVEELAEIVSRSAG 173 (305)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 37
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=8.3e-18 Score=135.59 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=89.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM 58 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~ 58 (174)
||||++++ ..+...+.+++.+ +++||+|||||||||+|+++|+.+++... +..+
T Consensus 16 ivGq~~i~---~~L~~~i~~~~l~-~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 16 VVGQDHVK---KLIINALKKNSIS-HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 68999998 4555666788765 77999999999999999999999986421 2233
Q ss_pred cccccch-hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC
Q psy14616 59 AGSEIYS-LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG 131 (174)
Q Consensus 59 ~~~~~~~-~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 131 (174)
+++...+ .++..+.+.....+ ..++++++|.+ +. ..++..+ ....+. ++.++ +.++ +.+..
T Consensus 92 ~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-t~---~a~~~LL-----k~LE~p~~~vv~--Ilat-tn~~k 159 (472)
T PRK14962 92 DAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-TK---EAFNALL-----KTLEEPPSHVVF--VLAT-TNLEK 159 (472)
T ss_pred eCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-HH---HHHHHHH-----HHHHhCCCcEEE--EEEe-CChHh
Confidence 3321111 11112112221111 13444555555 22 1111111 111111 22333 4444 34568
Q ss_pred CCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
++++++|||+++.|.+++.+++..+++.....
T Consensus 160 l~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 160 VPPTIISRCQVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred hhHHHhcCcEEEEECCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987644
No 38
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.8e-18 Score=138.86 Aligned_cols=147 Identities=19% Similarity=0.283 Sum_probs=91.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC--------------------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP-------------------------- 54 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~-------------------------- 54 (174)
||||++++ ..+.+++.+++.+ +.+||+||+|||||++|+++|+.++|..+
T Consensus 18 viGQe~vv---~~L~~~l~~~rl~-ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 18 MVGQEHVV---QALTNALTQQRLH-HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 68999999 5566666888876 78899999999999999999999987421
Q ss_pred -eeeecccccchh-hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcc
Q psy14616 55 -FTSMAGSEIYSL-EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTA 125 (174)
Q Consensus 55 -~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~ 125 (174)
+..++..+-.+. ++....+.....+ ..++++|+|.+ +. ...+..++ +.+. + +..| |.++
T Consensus 94 D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-s~---~a~NaLLK------tLEEPP~~~~f--IL~T 161 (618)
T PRK14951 94 DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-TN---TAFNAMLK------TLEEPPEYLKF--VLAT 161 (618)
T ss_pred ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-CH---HHHHHHHH------hcccCCCCeEE--EEEE
Confidence 111111110000 1111111111111 13455566665 33 22222111 1122 2 2334 3344
Q ss_pred cCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 126 YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 126 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+++..++++++|||++++|.+++.+++.++++..+.++
T Consensus 162 -td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 162 -TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred -CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHc
Confidence 46778999999999999999999999999999877554
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=7.9e-18 Score=128.20 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=96.8
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCc---CCceEEEEcCCCCcHHHHHHHHHHHhCC-----CCCeeeecccccch
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKI---AGRAILLAGQPGTGKTAIAMGLAQALGP-----DTPFTSMAGSEIYS 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~---~~~~~ll~GppG~GKT~la~~la~~l~~-----~~~~~~~~~~~~~~ 65 (174)
++|++++|+++..+..++.. |.. ++.+++|+||||||||++|+++|+.+.. ..+++.++..++.+
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~ 104 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG 104 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence 68999999988877654431 221 2457999999999999999999987621 12466666666655
Q ss_pred hhhhhhhhh----h-hhccCcEEEEEEeccCCCCC-CccceeEEEeccchhhhcc-ccccchhhhcccCCC----CCCCH
Q psy14616 66 LEMNKTEEE----T-EMIEGEVVEIQIERPATGLG-SKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSP----HGIPI 134 (174)
Q Consensus 66 ~~~~~~~~~----~-~~~~~~i~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~----~~l~~ 134 (174)
.+.+..... . ....|.++++|+|.+..+.. .+.+.-. ...-.....+. .+.++ |++++... ..++|
T Consensus 105 ~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~-~~~L~~~me~~~~~~~v--I~ag~~~~~~~~~~~np 181 (287)
T CHL00181 105 QYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEA-IEILLQVMENQRDDLVV--IFAGYKDRMDKFYESNP 181 (287)
T ss_pred HHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHH-HHHHHHHHhcCCCCEEE--EEeCCcHHHHHHHhcCH
Confidence 555433211 1 12345667788887633210 0000000 00000001111 22222 34432111 24579
Q ss_pred Hhhcce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 135 DLLDRM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 135 ~l~sR~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++.+|| ..|.|++|+.+|+.+|+...+.+.
T Consensus 182 ~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 182 GLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 999999 789999999999999999987654
No 40
>KOG1942|consensus
Probab=99.73 E-value=5.9e-17 Score=120.90 Aligned_cols=72 Identities=60% Similarity=0.980 Sum_probs=68.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
+|||+.++.+.....+++++-+..++.+||.||||||||.+|-+++++||..+||+.+.++.+++.++.+++
T Consensus 40 ~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTE 111 (456)
T KOG1942|consen 40 FVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTE 111 (456)
T ss_pred cccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998887776
No 41
>KOG2680|consensus
Probab=99.73 E-value=3.5e-17 Score=122.35 Aligned_cols=92 Identities=82% Similarity=1.213 Sum_probs=81.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh--------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (174)
+|||-.++++...+..++++|+..++.+|+.|+||+|||.+|..+|+.||.+.||..+.++.+++.++.+++
T Consensus 42 mVGQ~~AR~Aagvi~kmi~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRk 121 (454)
T KOG2680|consen 42 MVGQVKARKAAGVILKMIREGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRK 121 (454)
T ss_pred chhhHHHHHHhHHHHHHHHcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -------hhhhhccCcEEEEEEeccCC
Q psy14616 73 -------EETEMIEGEVVEIQIERPAT 92 (174)
Q Consensus 73 -------~~~~~~~~~i~~~~id~~~~ 92 (174)
++.++..|.++.+.||+..+
T Consensus 122 siGvrIKEetevIEGEVVeiqidRp~t 148 (454)
T KOG2680|consen 122 SIGVRIKEETEVIEGEVVEIQIDRPAT 148 (454)
T ss_pred hhceEeeheeeeecceEEEEEeecccc
Confidence 33455577777777766533
No 42
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=131.24 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=104.5
Q ss_pred CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+..++.+....... +-|..+++++||+||||||||++|+++|..++ .++..+.+..+...+.+...
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~fi~i~~s~l~~k~~ge~~ 224 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATFIRVVGSEFVQKYLGEGP 224 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHHHHhcchhH
Confidence 568898997777655321 22556679999999999999999999999987 44777776666555555433
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCCccce-----eEEEeccchhhh---ccccccchhhhcccCCCCCCCHHh
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGSKVGK-----LTMKTTEMETSY---DLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
..+ ...|..++++|+|.+.....+.... .......+.... ...+..+ |++| |++..++|++
T Consensus 225 ~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V--I~aT-N~~d~LDpAl 301 (398)
T PTZ00454 225 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV--IMAT-NRADTLDPAL 301 (398)
T ss_pred HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE--EEec-CCchhCCHHH
Confidence 111 2236678888999874332111000 000011111111 1123333 5555 8899999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
++ || ..|+++.|+.++..+|++.++.+..
T Consensus 302 lR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~ 333 (398)
T PTZ00454 302 LRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN 333 (398)
T ss_pred cCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 86 99 7899999999999999998775543
No 43
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=6.4e-18 Score=138.79 Aligned_cols=147 Identities=20% Similarity=0.256 Sum_probs=91.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------- 65 (174)
||||++++ ..+.+++++|+.+ +.+||+||+|||||++|+++|+.++|........|+.|.+
T Consensus 17 VIGQe~vv---~~L~~aI~~grl~-HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 17 LVGQNHVS---RALSSALERGRLH-HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 68999998 5556666788876 8889999999999999999999998753211111111110
Q ss_pred --------hhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616 66 --------LEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH 130 (174)
Q Consensus 66 --------~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 130 (174)
.++....+.....+ + .++++++|.+ +. ...+.. ...... .+..| |.++ +++.
T Consensus 93 DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-S~---~A~NAL------LKtLEEPP~~v~F--ILaT-td~~ 159 (702)
T PRK14960 93 DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-ST---HSFNAL------LKTLEEPPEHVKF--LFAT-TDPQ 159 (702)
T ss_pred cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-CH---HHHHHH------HHHHhcCCCCcEE--EEEE-CChH
Confidence 01111111111111 1 3444566655 32 112211 111222 22334 4444 4677
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++++++|||+++.|.+++.+++.++++..+.++
T Consensus 160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc
Confidence 8899999999999999999999999999877654
No 44
>KOG0736|consensus
Probab=99.73 E-value=1.1e-17 Score=137.38 Aligned_cols=156 Identities=22% Similarity=0.296 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHH-------HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh
Q psy14616 3 GQLQARRAAGVVL-------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET 75 (174)
Q Consensus 3 G~~~~~~~l~~~~-------~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (174)
|.|++|..+.... +...+|..+..++|||||||||||.+|+++|-++. ..|..+.+-++..+++|+.+...
T Consensus 676 GLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--L~FlSVKGPELLNMYVGqSE~NV 753 (953)
T KOG0736|consen 676 GLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELLNMYVGQSEENV 753 (953)
T ss_pred CHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--eeEEeecCHHHHHHHhcchHHHH
Confidence 6888996655433 33445666567999999999999999999999886 45889999999999999988432
Q ss_pred -hh-------ccCcEEEEEEeccCCCC---CCcccee-EEE---eccchhhhc-cccccchhhhcccCCCCCCCHHhh--
Q psy14616 76 -EM-------IEGEVVEIQIERPATGL---GSKVGKL-TMK---TTEMETSYD-LGAKMIEAIGTAYSSPHGIPIDLL-- 137 (174)
Q Consensus 76 -~~-------~~~~i~~~~id~~~~~~---~~~~~~~-~~~---~~~~~~~~~-~~~~~~~~i~~~~~~~~~l~~~l~-- 137 (174)
++ .|+.|+++|+|.+.... +|+.+.+ +.. ..+++...+ -...+| +..++|+|.-+||+|+
T Consensus 754 R~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VF--ViGATNRPDLLDpALLRP 831 (953)
T KOG0736|consen 754 REVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVF--VIGATNRPDLLDPALLRP 831 (953)
T ss_pred HHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceE--EEecCCCccccChhhcCC
Confidence 22 48899999999985444 3444432 111 223333443 234556 4455599999999999
Q ss_pred cce-eeEecCCCC-HHHHHHHHHHHhc
Q psy14616 138 DRM-VIIPTQPYQ-DEEIQAILKIRLV 162 (174)
Q Consensus 138 sR~-~~i~~~~~~-~~e~~~il~~~l~ 162 (174)
.|| ..+++.+.+ .+....+|+...+
T Consensus 832 GRFDKLvyvG~~~d~esk~~vL~AlTr 858 (953)
T KOG0736|consen 832 GRFDKLVYVGPNEDAESKLRVLEALTR 858 (953)
T ss_pred CccceeEEecCCccHHHHHHHHHHHHH
Confidence 899 566666554 5555666665443
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.73 E-value=5.4e-17 Score=126.14 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=94.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch-hhhhhhhhhhhhc-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS-LEMNKTEEETEMI- 78 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 78 (174)
+|||++.++.+..+....+....++++++|+||||||||++|+++|+.++... ...+...... .++.... ....
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~--~~~~~~~~~~~~~l~~~l--~~l~~ 102 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI--RITSGPALEKPGDLAAIL--TNLEE 102 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe--EEEecccccChHHHHHHH--Hhccc
Confidence 68999999888887776655445567999999999999999999999998653 2222211110 0111100 1112
Q ss_pred cCcEEEEEEeccCCCCCCc-------cc--eeEEEeccchhh--hccccccchhhhcccCCCCCCCHHhhcce-eeEecC
Q psy14616 79 EGEVVEIQIERPATGLGSK-------VG--KLTMKTTEMETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQ 146 (174)
Q Consensus 79 ~~~i~~~~id~~~~~~~~~-------~~--~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~ 146 (174)
.+.++++|+|.+ +....+ .. .+.+....-... ..+++..+ ++++ ++...++++|+||| .++.++
T Consensus 103 ~~vl~IDEi~~l-~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l--i~at-~~~~~l~~~L~sRf~~~~~l~ 178 (328)
T PRK00080 103 GDVLFIDEIHRL-SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL--IGAT-TRAGLLTSPLRDRFGIVQRLE 178 (328)
T ss_pred CCEEEEecHhhc-chHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE--Eeec-CCcccCCHHHHHhcCeeeecC
Confidence 235666788876 321000 00 011111100001 11233223 5565 67788999999999 779999
Q ss_pred CCCHHHHHHHHHHHhc
Q psy14616 147 PYQDEEIQAILKIRLV 162 (174)
Q Consensus 147 ~~~~~e~~~il~~~l~ 162 (174)
+|+.+++.+++++...
T Consensus 179 ~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 179 FYTVEELEKIVKRSAR 194 (328)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998654
No 46
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.72 E-value=5.3e-18 Score=136.43 Aligned_cols=151 Identities=26% Similarity=0.289 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEG 80 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (174)
++||+++. ..+.+++++++.+ |.++|+||-||||||+||.+|+.|||......-.|+.|.. +.++..|
T Consensus 18 vvGQe~v~---~~L~nal~~~ri~-hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~--------Ck~I~~g 85 (515)
T COG2812 18 VVGQEHVV---KTLSNALENGRIA-HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS--------CKEINEG 85 (515)
T ss_pred hcccHHHH---HHHHHHHHhCcch-hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh--------hHhhhcC
Confidence 58999999 5666666888887 9999999999999999999999999875322223333322 1233333
Q ss_pred -cEEEEEEeccCCCCCC------------c-cc--eeEEEec----------cchhhhcc-ccccchhhhcccCCCCCCC
Q psy14616 81 -EVVEIQIERPATGLGS------------K-VG--KLTMKTT----------EMETSYDL-GAKMIEAIGTAYSSPHGIP 133 (174)
Q Consensus 81 -~i~~~~id~~~~~~~~------------~-~~--~~~~~~~----------~~~~~~~~-~~~~~~~i~~~~~~~~~l~ 133 (174)
-+..+|||.+.+..-+ + .+ .+..++. .+..+... +.++...+||| .+.+++
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT--e~~Kip 163 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT--EPQKIP 163 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC--CcCcCc
Confidence 2333455544221100 0 00 0111110 01111222 22333224554 789999
Q ss_pred HHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 134 IDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 134 ~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
++++|||+.+.|..++.+++...|...+.++.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999886654
No 47
>PLN03025 replication factor C subunit; Provisional
Probab=99.72 E-value=1.1e-17 Score=129.43 Aligned_cols=146 Identities=17% Similarity=0.239 Sum_probs=92.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh-hhh-hhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM-NKT-EEET 75 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~-~~~-~~~~ 75 (174)
++||++++.. +..+++++..+ +++|+||||||||++|+++|+++.+. ..+..++.++..+.+. ... ...+
T Consensus 15 ~~g~~~~~~~---L~~~~~~~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~ 89 (319)
T PLN03025 15 IVGNEDAVSR---LQVIARDGNMP--NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFA 89 (319)
T ss_pred hcCcHHHHHH---HHHHHhcCCCc--eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHH
Confidence 5899998855 44556777665 79999999999999999999998432 2345566554433221 110 0101
Q ss_pred h----h---ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-cc-ccchhhhcccCCCCCCCHHhhcceeeEecC
Q psy14616 76 E----M---IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GA-KMIEAIGTAYSSPHGIPIDLLDRMVIIPTQ 146 (174)
Q Consensus 76 ~----~---~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~ 146 (174)
. . ....++++|+|.+ +. ..++..+. ..+. +. +.| +.++ |....+.++++|||.+++|.
T Consensus 90 ~~~~~~~~~~~kviiiDE~d~l-t~---~aq~aL~~------~lE~~~~~t~~--il~~-n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 90 QKKVTLPPGRHKIVILDEADSM-TS---GAQQALRR------TMEIYSNTTRF--ALAC-NTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred hccccCCCCCeEEEEEechhhc-CH---HHHHHHHH------HHhcccCCceE--EEEe-CCccccchhHHHhhhcccCC
Confidence 0 1 1224566688777 32 12222111 1111 11 223 3333 66778999999999999999
Q ss_pred CCCHHHHHHHHHHHhchh
Q psy14616 147 PYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 147 ~~~~~e~~~il~~~l~~~ 164 (174)
+++++++.++++....++
T Consensus 157 ~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAE 174 (319)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 999999999999877554
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.72 E-value=1.3e-17 Score=133.15 Aligned_cols=147 Identities=24% Similarity=0.326 Sum_probs=96.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhh--h-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETE--M- 77 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 77 (174)
+|||+++...-..+..+++++..+ +++|+||||||||++|+++|+.++.. +..+++......++....+... .
T Consensus 14 ~vGq~~~v~~~~~L~~~i~~~~~~--~ilL~GppGtGKTtLA~~ia~~~~~~--~~~l~a~~~~~~~ir~ii~~~~~~~~ 89 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIEAGRLS--SMILWGPPGTGKTTLARIIAGATDAP--FEALSAVTSGVKDLREVIEEARQRRS 89 (413)
T ss_pred hcCcHHHhCcchHHHHHHHcCCCc--eEEEECCCCCCHHHHHHHHHHHhCCC--EEEEecccccHHHHHHHHHHHHHhhh
Confidence 689999976645577777777654 89999999999999999999998854 6666655432223322222221 1
Q ss_pred --ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhh-cccCCCCCCCHHhhcceeeEecCCCCHHHHH
Q psy14616 78 --IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIG-TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 154 (174)
Q Consensus 78 --~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~ 154 (174)
....++++|+|++ +. ..+...+. ..+....++ ++ ++.|....++++++|||.++.|.+++.+++.
T Consensus 90 ~g~~~vL~IDEi~~l-~~---~~q~~LL~------~le~~~iil--I~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 90 AGRRTILFIDEIHRF-NK---AQQDALLP------HVEDGTITL--IGATTENPSFEVNPALLSRAQVFELKPLSEEDIE 157 (413)
T ss_pred cCCceEEEEechhhh-CH---HHHHHHHH------HhhcCcEEE--EEeCCCChhhhccHHHhccceeeEeCCCCHHHHH
Confidence 1224555677765 32 22221111 111122223 43 4445567899999999999999999999999
Q ss_pred HHHHHHhch
Q psy14616 155 AILKIRLVK 163 (174)
Q Consensus 155 ~il~~~l~~ 163 (174)
.++++.+..
T Consensus 158 ~lL~~~l~~ 166 (413)
T PRK13342 158 QLLKRALED 166 (413)
T ss_pred HHHHHHHHH
Confidence 999997654
No 49
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.6e-17 Score=136.56 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-------------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------- 66 (174)
||||++++ ..+.+++++|+.+ |.+||+||+|||||++|+++|+.++|........|+.|-++
T Consensus 15 ivGq~~i~---~~L~~~i~~~r~~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 15 VVGQEHVT---EPLSSALDAGRIN-HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 68999999 5566667888876 67899999999999999999999987521111112211110
Q ss_pred -----------hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCC
Q psy14616 67 -----------EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSS 128 (174)
Q Consensus 67 -----------~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~ 128 (174)
++.++.+.....| ..+++++.|.+ +. ..++..+ .+... + +.+| |.++ +.
T Consensus 91 eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-t~---~A~NALL------K~LEEpp~~~~f--IL~t-te 157 (584)
T PRK14952 91 ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-TT---AGFNALL------KIVEEPPEHLIF--IFAT-TE 157 (584)
T ss_pred EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-CH---HHHHHHH------HHHhcCCCCeEE--EEEe-CC
Confidence 0000001111111 12333455444 22 1222111 11222 2 3344 3344 45
Q ss_pred CCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+..+.++++|||+++.|.+++.+++.++++..+.++
T Consensus 158 ~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e 193 (584)
T PRK14952 158 PEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQE 193 (584)
T ss_pred hHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 679999999999999999999999999998876554
No 50
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.8e-17 Score=140.74 Aligned_cols=147 Identities=19% Similarity=0.139 Sum_probs=90.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-------------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------- 66 (174)
||||+++++ .|..++++++.+ |.+||+||+|||||++|++||+.|+|........|+.|-++
T Consensus 17 iiGqe~v~~---~L~~~i~~~ri~-Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 17 VIGQEHVTE---PLSTALDSGRIN-HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred hcCcHHHHH---HHHHHHHhCCCC-ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 689999994 455566788876 67999999999999999999999987421111112222110
Q ss_pred -----------hhhhhhhhhhhc----c-CcEEEEEEeccCCCCCCccceeEEEeccchhhhc-c-ccccchhhhcccCC
Q psy14616 67 -----------EMNKTEEETEMI----E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-L-GAKMIEAIGTAYSS 128 (174)
Q Consensus 67 -----------~~~~~~~~~~~~----~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~ 128 (174)
++..+.+..... . ..++++++|.+ +. ..++..++ .++ . .+++| |.++ +.
T Consensus 93 eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-t~---~a~NaLLK------~LEEpP~~~~f--Il~t-t~ 159 (824)
T PRK07764 93 EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-TP---QGFNALLK------IVEEPPEHLKF--IFAT-TE 159 (824)
T ss_pred EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-CH---HHHHHHHH------HHhCCCCCeEE--EEEe-CC
Confidence 011111111111 1 13445566666 32 22222211 122 2 23344 3344 45
Q ss_pred CCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
...+.++|+|||++|.|.+++.+++.++|++.+.++
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 667999999999999999999999999999876544
No 51
>KOG0742|consensus
Probab=99.72 E-value=1.2e-17 Score=129.34 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHH---HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc-----
Q psy14616 7 ARRAAGVVLGMI---KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI----- 78 (174)
Q Consensus 7 ~~~~l~~~~~~~---~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 78 (174)
+.+.|+.+.... +..+.|.+|++||||||||||.+|+-||+..|.+ |..++++++..+.-..+....+++
T Consensus 363 Le~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlD--YA~mTGGDVAPlG~qaVTkiH~lFDWakk 440 (630)
T KOG0742|consen 363 LEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLD--YAIMTGGDVAPLGAQAVTKIHKLFDWAKK 440 (630)
T ss_pred HHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCc--eehhcCCCccccchHHHHHHHHHHHHHhh
Confidence 444455444333 3456677899999999999999999999999965 667788887765555555444443
Q ss_pred cCcEEEEEEecc---CCC---CCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcce-eeEecCCCCHH
Q psy14616 79 EGEVVEIQIERP---ATG---LGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQPYQDE 151 (174)
Q Consensus 79 ~~~i~~~~id~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~~~~~ 151 (174)
+.+-++++||+. +.. ...++..-.-....+..+-+.++.++ ++.++|+|..++.++.+|+ ++++|+-|.++
T Consensus 441 S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdiv--LvlAtNrpgdlDsAV~DRide~veFpLPGeE 518 (630)
T KOG0742|consen 441 SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIV--LVLATNRPGDLDSAVNDRIDEVVEFPLPGEE 518 (630)
T ss_pred cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceE--EEeccCCccchhHHHHhhhhheeecCCCChH
Confidence 234455556654 111 11111111111223344445666666 5666699999999999999 99999999999
Q ss_pred HHHHHHHHHhchhh
Q psy14616 152 EIQAILKIRLVKNE 165 (174)
Q Consensus 152 e~~~il~~~l~~~~ 165 (174)
|..++|..++.+.-
T Consensus 519 ERfkll~lYlnkyi 532 (630)
T KOG0742|consen 519 ERFKLLNLYLNKYI 532 (630)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999986643
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.2e-17 Score=134.66 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=89.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc----------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY---------------- 64 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~---------------- 64 (174)
||||++++ ..+...++.++.+ +.+||+||+|||||++|+.+|+.++|......-.++.|.
T Consensus 18 iiGq~~~v---~~L~~~i~~~rl~-ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 18 VAGQQHAL---NSLVHALETQKVH-HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 68999999 4566667888765 679999999999999999999999874211111111110
Q ss_pred ------h-hhhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616 65 ------S-LEMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH 130 (174)
Q Consensus 65 ------~-~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~ 130 (174)
+ .++..+.+..... ...++++++|++ +. ..++..++ .... + ...| |.++ ++..
T Consensus 94 daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-s~---~a~naLLK------~LEepp~~v~f--IL~T-td~~ 160 (546)
T PRK14957 94 DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-SK---QSFNALLK------TLEEPPEYVKF--ILAT-TDYH 160 (546)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-cH---HHHHHHHH------HHhcCCCCceE--EEEE-CChh
Confidence 0 0111111111111 113444566655 32 22221111 1122 2 2333 3344 4578
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++++++|||++++|.+++.+++.+++++.+.++
T Consensus 161 kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999876553
No 53
>KOG0737|consensus
Probab=99.72 E-value=8.2e-18 Score=128.44 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHH-------HHHhcC--cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 3 GQLQARRAAGVVLG-------MIKEGK--IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 3 G~~~~~~~l~~~~~-------~~~~g~--~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|.+.+++++..+.- ....|+ .|++++||+||||||||.+|+++|++.|. .|+.+..+.+.+.+.++.+.
T Consensus 96 gLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga--~fInv~~s~lt~KWfgE~eK 173 (386)
T KOG0737|consen 96 GLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA--NFINVSVSNLTSKWFGEAQK 173 (386)
T ss_pred chHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC--CcceeeccccchhhHHHHHH
Confidence 57788877665442 111222 24689999999999999999999999994 48888888888888877662
Q ss_pred h--------hhhccCcEEEEEEeccCCCCC--CccceeE----EEeccchhhhccccccchhhhcccCCCCCCCHHhhcc
Q psy14616 74 E--------TEMIEGEVVEIQIERPATGLG--SKVGKLT----MKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDR 139 (174)
Q Consensus 74 ~--------~~~~~~~i~~~~id~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR 139 (174)
. ..+.|..++++|+|.++...+ +-+.... |...|-....+-...++ +..++|+|..++.++++|
T Consensus 174 lv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVl--VlgATNRP~DlDeAiiRR 251 (386)
T KOG0737|consen 174 LVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVL--VLGATNRPFDLDEAIIRR 251 (386)
T ss_pred HHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEE--EEeCCCCCccHHHHHHHh
Confidence 2 244577888889887732221 1111111 22222111111122233 445559999999999999
Q ss_pred e-eeEecCCCCHHHHHHHHHHHhchhhhh
Q psy14616 140 M-VIIPTQPYQDEEIQAILKIRLVKNERN 167 (174)
Q Consensus 140 ~-~~i~~~~~~~~e~~~il~~~l~~~~~~ 167 (174)
+ .++++.-|+.++..+||+-.|.++...
T Consensus 252 ~p~rf~V~lP~~~qR~kILkviLk~e~~e 280 (386)
T KOG0737|consen 252 LPRRFHVGLPDAEQRRKILKVILKKEKLE 280 (386)
T ss_pred CcceeeeCCCchhhHHHHHHHHhcccccC
Confidence 9 899999999999999999998777654
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=9e-18 Score=135.22 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----------------------eee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----------------------TSM 58 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----------------------~~~ 58 (174)
+|||++++ ..+.+++..|+.+ +++||+||+|+||||+|+.+|+.++|.... ..+
T Consensus 15 liGQe~vv---~~L~~a~~~~ri~-ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 15 LVGQDVLV---RILRNAFTLNKIP-QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 68999999 4556667888876 899999999999999999999999765321 112
Q ss_pred cccccch-hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616 59 AGSEIYS-LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH 130 (174)
Q Consensus 59 ~~~~~~~-~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~ 130 (174)
++++-.+ .++..+.+.+...| ..+++++.|.+ +. ..++..+ ...+. + ++.| |.++ +...
T Consensus 91 daas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-s~---~A~NaLL------K~LEePp~~v~f--Ilat-te~~ 157 (491)
T PRK14964 91 DAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHML-SN---SAFNALL------KTLEEPAPHVKF--ILAT-TEVK 157 (491)
T ss_pred ecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-CH---HHHHHHH------HHHhCCCCCeEE--EEEe-CChH
Confidence 2211111 11111112221111 12344455544 22 1122111 11111 2 2333 3344 4667
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++++++|||+.+.|.+++.+++.++++....++
T Consensus 158 Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999999876554
No 55
>CHL00176 ftsH cell division protein; Validated
Probab=99.71 E-value=3.5e-17 Score=135.92 Aligned_cols=159 Identities=24% Similarity=0.283 Sum_probs=106.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcC-------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGK-------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~-------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
|+|.+++++.+..+...++... ..++++||+||||||||++|+++|.+++ .+++.++++.+.....+...
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p~i~is~s~f~~~~~g~~~~ 262 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VPFFSISGSEFVEMFVGVGAA 262 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeeeccHHHHHHHhhhhhHH
Confidence 5799999999888887777533 3467999999999999999999999987 56777777665544333211
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCC-------cc-ceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGS-------KV-GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
..+ ...|+.++++|+|.+....+. +. +.+.-....++......+.++ ++++ |++..++++++
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV--IaaT-N~~~~LD~ALl 339 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV--IAAT-NRVDILDAALL 339 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE--EEec-CchHhhhhhhh
Confidence 112 224567888899987432211 00 000000001111111123333 5555 88889999999
Q ss_pred c--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 138 D--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+ || ..+.++.|+.++..+|++.++.+.
T Consensus 340 RpGRFd~~I~v~lPd~~~R~~IL~~~l~~~ 369 (638)
T CHL00176 340 RPGRFDRQITVSLPDREGRLDILKVHARNK 369 (638)
T ss_pred ccccCceEEEECCCCHHHHHHHHHHHHhhc
Confidence 5 78 789999999999999999988653
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.71 E-value=2.4e-17 Score=125.48 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=97.1
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCc---CCceEEEEcCCCCcHHHHHHHHHHHhCC-----CCCeeeecccccch
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKI---AGRAILLAGQPGTGKTAIAMGLAQALGP-----DTPFTSMAGSEIYS 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~---~~~~~ll~GppG~GKT~la~~la~~l~~-----~~~~~~~~~~~~~~ 65 (174)
++|++++|+++..+..++.. |.. ++.+++|+||||||||++|+++|+.+.. ..+++.++..++.+
T Consensus 24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~ 103 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG 103 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH
Confidence 58999999998877665532 322 3458999999999999999999987732 12466666655554
Q ss_pred hhhhhhhhh----h-hhccCcEEEEEEeccCCCCC-----CccceeEEEeccchhhhcc-ccccchhhhccc-CCC---C
Q psy14616 66 LEMNKTEEE----T-EMIEGEVVEIQIERPATGLG-----SKVGKLTMKTTEMETSYDL-GAKMIEAIGTAY-SSP---H 130 (174)
Q Consensus 66 ~~~~~~~~~----~-~~~~~~i~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~-~~~---~ 130 (174)
...+..... . ....|.++++|+|.+..... .+.+...+. ...+. .+..+ |++++ ++. .
T Consensus 104 ~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~-----~le~~~~~~~v--I~a~~~~~~~~~~ 176 (284)
T TIGR02880 104 QYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQ-----VMENQRDDLVV--ILAGYKDRMDSFF 176 (284)
T ss_pred hhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHH-----HHhcCCCCEEE--EEeCCcHHHHHHH
Confidence 444432211 1 12345667788887632210 000111000 00011 22222 44442 212 3
Q ss_pred CCCHHhhcce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++|++.+|| ..|.|++|+.+|+.+|++..+.+.
T Consensus 177 ~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 177 ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 4689999999 789999999999999999988654
No 57
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.2e-17 Score=135.05 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=90.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------- 65 (174)
||||+++++ .+.+++.+++.+ +.+||+||||+|||++|+.+|+.++|+.....-.|+.|.+
T Consensus 18 ivGq~~v~~---~L~~~i~~~~~~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 18 LVGQEHVVR---ALTNALEQQRLH-HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred hcCcHHHHH---HHHHHHHcCCCC-EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 689999995 555566777765 7789999999999999999999998753211111222110
Q ss_pred --------hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616 66 --------LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH 130 (174)
Q Consensus 66 --------~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 130 (174)
.++..+.+.+...| ..+++++.|++ +. +.++.. ...... .++.| |.++ +++.
T Consensus 94 ~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-s~---~a~naL------LK~LEepp~~~~f--IL~t-~d~~ 160 (527)
T PRK14969 94 DAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-SK---SAFNAM------LKTLEEPPEHVKF--ILAT-TDPQ 160 (527)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-CH---HHHHHH------HHHHhCCCCCEEE--EEEe-CChh
Confidence 00111111111111 13444566655 22 122211 111222 22333 4444 4677
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++++++|||+.++|.+++.+++.+.+...+.++
T Consensus 161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e 194 (527)
T PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE 194 (527)
T ss_pred hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 8888999999999999999999999998877544
No 58
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=9.1e-17 Score=132.25 Aligned_cols=147 Identities=24% Similarity=0.238 Sum_probs=90.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-------------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------- 66 (174)
||||++++ ..+.++++.++.+ |.+||+||+|||||++|+.+|+.++|..+.....|+.|.++
T Consensus 18 viGq~~v~---~~L~~~i~~~~~~-hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ei 93 (559)
T PRK05563 18 VVGQEHIT---KTLKNAIKQGKIS-HAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEI 93 (559)
T ss_pred ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEe
Confidence 68999999 5666667778765 78999999999999999999999987532111122221110
Q ss_pred ---------hhhhhhhhhhhcc----C-cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616 67 ---------EMNKTEEETEMIE----G-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH 130 (174)
Q Consensus 67 ---------~~~~~~~~~~~~~----~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~ 130 (174)
++..+.+.....| . .+++++.|.+ +. +..+.. ..+... + +++| |.++ +.+.
T Consensus 94 daas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-t~---~a~naL------LKtLEepp~~~if--Ilat-t~~~ 160 (559)
T PRK05563 94 DAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-ST---GAFNAL------LKTLEEPPAHVIF--ILAT-TEPH 160 (559)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-CH---HHHHHH------HHHhcCCCCCeEE--EEEe-CChh
Confidence 1111112221111 1 2344455555 21 111211 111122 2 2334 4444 4678
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++++++|||+.+.|.+++.+++.++++..+.++
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999998876543
No 59
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=4.1e-17 Score=132.24 Aligned_cols=149 Identities=19% Similarity=0.145 Sum_probs=88.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeee----ecccccch-----------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS----MAGSEIYS----------- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~----~~~~~~~~----------- 65 (174)
+|||++++ ..+..++.+++.+ +++||+||||||||++|+++|+.++|...... ..|+.|.+
T Consensus 23 liGq~~vv---~~L~~ai~~~ri~-~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 23 LQGQEVLV---KVLSYTILNDRLA-GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 58999999 4555566778765 89999999999999999999999987532110 01111100
Q ss_pred ------------hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccC
Q psy14616 66 ------------LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYS 127 (174)
Q Consensus 66 ------------~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 127 (174)
.++....+.+...| ..++++++|.+ +. ...+..++ ...+.+ +..| |.++ +
T Consensus 99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-s~---~a~naLLk-----~LEepp~~~vf--I~aT-t 166 (507)
T PRK06645 99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-SK---GAFNALLK-----TLEEPPPHIIF--IFAT-T 166 (507)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-CH---HHHHHHHH-----HHhhcCCCEEE--EEEe-C
Confidence 01111111111111 12334455444 21 11111111 011122 2333 3333 4
Q ss_pred CCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 128 SPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 128 ~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
....++++++|||+++.|.+++.+++.++++..+.++.
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999998876543
No 60
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=7.2e-17 Score=134.43 Aligned_cols=147 Identities=22% Similarity=0.240 Sum_probs=90.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee-eecccccch--------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT-SMAGSEIYS-------------- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~-~~~~~~~~~-------------- 65 (174)
||||+.++ ..+..+++.++.+ |.+||+||+|+|||++|+++|+.++|..... ...|+.|..
T Consensus 20 IiGQe~~v---~~L~~aI~~~rl~-HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 20 IVGQDHIV---QTLKNIIKSNKIS-HAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 68999999 5566666888776 8899999999999999999999998753210 011111110
Q ss_pred -----hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCC
Q psy14616 66 -----LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIP 133 (174)
Q Consensus 66 -----~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~ 133 (174)
.++..+.+.....| ..+++++.|.+ +. ..++.. ......+ +++| |.++ +.+..++
T Consensus 96 sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-T~---~A~NAL------LKtLEEPP~~tif--ILaT-te~~KLl 162 (725)
T PRK07133 96 SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-SK---SAFNAL------LKTLEEPPKHVIF--ILAT-TEVHKIP 162 (725)
T ss_pred ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-CH---HHHHHH------HHHhhcCCCceEE--EEEc-CChhhhh
Confidence 01111112222211 13344455554 22 112111 1111222 2333 3344 4677999
Q ss_pred HHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 134 IDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 134 ~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++++|||+++.|.+++.+++.++|+..+.++
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998866543
No 61
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.70 E-value=4.4e-17 Score=125.67 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=95.0
Q ss_pred CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-h-----hccCcEEEEEEe
Q psy14616 22 KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-E-----MIEGEVVEIQIE 88 (174)
Q Consensus 22 ~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~-----~~~~~i~~~~id 88 (174)
..+|..++||||||||||.+|+++|.++| .+++.++.+++.+.+.++.+ ..+ + ..|+.++++|||
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg--~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMG--IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcC--CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 34578999999999999999999999999 45899999999999999877 222 1 236788889999
Q ss_pred ccCCCCCCccce----eE---EE---ec----cchhh---hccccccchhhhcccCCCCCCCHHhhc--ceeeEecCCCC
Q psy14616 89 RPATGLGSKVGK----LT---MK---TT----EMETS---YDLGAKMIEAIGTAYSSPHGIPIDLLD--RMVIIPTQPYQ 149 (174)
Q Consensus 89 ~~~~~~~~~~~~----~~---~~---~~----~~~~~---~~~~~~~~~~i~~~~~~~~~l~~~l~s--R~~~i~~~~~~ 149 (174)
......++.... +. |. +. .+... .+..+.++. |+|+ |+++.|+|+|++ ||-.+ +..|+
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V-IaTT-Nrpd~LDpALlRpGRfDk~-i~lPd 299 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI-IVTG-NDFSTLYAPLIRDGRMEKF-YWAPT 299 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceE-EEeC-CCcccCCHhHcCCCCCCce-eCCCC
Confidence 885544221111 10 11 10 00001 011223331 5555 999999999998 99332 23689
Q ss_pred HHHHHHHHHHHhchhh
Q psy14616 150 DEEIQAILKIRLVKNE 165 (174)
Q Consensus 150 ~~e~~~il~~~l~~~~ 165 (174)
.++..+|++.++.+..
T Consensus 300 ~e~R~eIL~~~~r~~~ 315 (413)
T PLN00020 300 REDRIGVVHGIFRDDG 315 (413)
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999998775543
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=7.6e-17 Score=131.98 Aligned_cols=147 Identities=17% Similarity=0.214 Sum_probs=90.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-------------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------- 66 (174)
++||+.++ ..+.+++..++.+ |.+||+||+|+|||++|+++|+.+.|..+.....|+.|.++
T Consensus 18 IIGQe~iv---~~L~~aI~~~rl~-hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI 93 (605)
T PRK05896 18 IIGQELIK---KILVNAILNNKLT-HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL 93 (605)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence 68999999 5666677888776 88999999999999999999999977532211122222110
Q ss_pred ---------hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCC
Q psy14616 67 ---------EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPH 130 (174)
Q Consensus 67 ---------~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~ 130 (174)
++....+.....| +.+++++.|.+ +. +.++ .+....+.+ +.++ |.++ +.+.
T Consensus 94 daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-t~---~A~N------aLLKtLEEPp~~tvf--IL~T-t~~~ 160 (605)
T PRK05896 94 DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-ST---SAWN------ALLKTLEEPPKHVVF--IFAT-TEFQ 160 (605)
T ss_pred ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-CH---HHHH------HHHHHHHhCCCcEEE--EEEC-CChH
Confidence 0111111111111 12344455554 22 1111 112222222 2333 3344 4678
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.+.++++|||++++|.+++.+++..+++..+.++
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~ke 194 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKE 194 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999876543
No 63
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=2.7e-17 Score=135.83 Aligned_cols=147 Identities=19% Similarity=0.227 Sum_probs=91.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc----------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY---------------- 64 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~---------------- 64 (174)
||||++++ ..+.+.+++|+.+ +.+||+||+|+|||++|+++|+.++|........|+.|.
T Consensus 18 iiGq~~v~---~~L~~~i~~~~~~-hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei 93 (576)
T PRK14965 18 LTGQEHVS---RTLQNAIDTGRVA-HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI 93 (576)
T ss_pred ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence 68999999 5556666888766 788999999999999999999999875321111111111
Q ss_pred -------hhhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616 65 -------SLEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH 130 (174)
Q Consensus 65 -------~~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 130 (174)
..++..+.+.....| ..+++++.|.+ +. ..++. +..+.+. .++.| |.++ +.+.
T Consensus 94 d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-t~---~a~na------LLk~LEepp~~~~f--Il~t-~~~~ 160 (576)
T PRK14965 94 DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-ST---NAFNA------LLKTLEEPPPHVKF--IFAT-TEPH 160 (576)
T ss_pred eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-CH---HHHHH------HHHHHHcCCCCeEE--EEEe-CChh
Confidence 011111112222222 12444455555 22 11221 1112222 23344 3344 4668
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++++++|||+.+.|.+++.+++..+++..+.++
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e 194 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQE 194 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999998866544
No 64
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=5.5e-17 Score=134.19 Aligned_cols=148 Identities=20% Similarity=0.264 Sum_probs=91.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch--------------h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------L 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------~ 66 (174)
||||+++++ .+.+++++++.+ +.+||+||+|||||++|+++|+.++|........|+.|.+ .
T Consensus 18 IIGQe~vv~---~L~~ai~~~rl~-Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 18 LVGQEHVVK---ALQNALDEGRLH-HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HcCcHHHHH---HHHHHHHcCCCC-eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 689999995 555556777765 7899999999999999999999998753221111221110 0
Q ss_pred ---------hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616 67 ---------EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH 130 (174)
Q Consensus 67 ---------~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 130 (174)
.+..+.+.+...+ ..++++++|.+ +. ...+. +....+. .++.| |.++ +++.
T Consensus 94 daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-s~---~A~NA------LLKtLEEPp~~v~f--ILaT-td~~ 160 (709)
T PRK08691 94 DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-SK---SAFNA------MLKTLEEPPEHVKF--ILAT-TDPH 160 (709)
T ss_pred eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-CH---HHHHH------HHHHHHhCCCCcEE--EEEe-CCcc
Confidence 0111111111111 13444455554 22 11111 1112221 22334 4444 5778
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
.++++++|||+.+.|.+++.+++.++|++.+.++.
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999998876653
No 65
>KOG0991|consensus
Probab=99.68 E-value=5.1e-17 Score=117.62 Aligned_cols=144 Identities=19% Similarity=0.321 Sum_probs=97.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-CCC--CCeeeecccccchhhhhhhh----h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-GPD--TPFTSMAGSEIYSLEMNKTE----E 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l-~~~--~~~~~~~~~~~~~~~~~~~~----~ 73 (174)
|||.|+....++.+ .++|..| |+++.|||||||||.+.++|++| |.. -....+|+++--+.++.... .
T Consensus 29 IVGNe~tv~rl~vi---a~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 29 IVGNEDTVERLSVI---AKEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred hhCCHHHHHHHHHH---HHcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 68999999555554 4888887 99999999999999999999987 422 22456777766555543322 1
Q ss_pred hh--hhccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616 74 ET--EMIEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP 147 (174)
Q Consensus 74 ~~--~~~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~ 147 (174)
.. ..-+| .++.+|.|.+..+ .+|.+ .++... ++... ++.++|...++.+++.|||.+++|..
T Consensus 104 Q~kv~lp~grhKIiILDEADSMT~g---AQQAl-------RRtMEiyS~ttR--FalaCN~s~KIiEPIQSRCAiLRysk 171 (333)
T KOG0991|consen 104 QKKVTLPPGRHKIIILDEADSMTAG---AQQAL-------RRTMEIYSNTTR--FALACNQSEKIIEPIQSRCAILRYSK 171 (333)
T ss_pred HhhccCCCCceeEEEeeccchhhhH---HHHHH-------HHHHHHHcccch--hhhhhcchhhhhhhHHhhhHhhhhcc
Confidence 11 11133 4566677777444 23322 111111 22222 56677889999999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy14616 148 YQDEEIQAILKIRL 161 (174)
Q Consensus 148 ~~~~e~~~il~~~l 161 (174)
+++.++..-|....
T Consensus 172 lsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 172 LSDQQILKRLLEVA 185 (333)
T ss_pred cCHHHHHHHHHHHH
Confidence 99988876666544
No 66
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.68 E-value=6.7e-17 Score=128.92 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=102.8
Q ss_pred CCchHHHHHHHHHHHHHH-H-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI-K-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~-~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+..++.+..+.... . -|..++.++||+||||||||++|+++|..++. +++.+..+.+...+.+...
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~fi~V~~seL~~k~~Ge~~ 262 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TFLRVVGSELIQKYLGDGP 262 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CEEEEecchhhhhhcchHH
Confidence 357888887777666432 1 24456789999999999999999999999974 4777777666655554433
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCC--ccc-----eeEEE-eccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGS--KVG-----KLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~--~~~-----~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
. .+ ...+..++++|+|.++....+ ..+ ...+. ...+.......+..+ |+++ |++..+++++
T Consensus 263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~V--I~AT-Nr~d~LDpaL 339 (438)
T PTZ00361 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKV--IMAT-NRIESLDPAL 339 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEE--EEec-CChHHhhHHh
Confidence 1 11 123456777788877433211 010 00000 001111111223333 5555 8899999999
Q ss_pred h--cce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 137 L--DRM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 137 ~--sR~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
+ +|| ..|+|+.|+.++..+|++.++.+..
T Consensus 340 lRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~ 371 (438)
T PTZ00361 340 IRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT 371 (438)
T ss_pred ccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 8 499 7899999999999999998875543
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.2e-16 Score=127.36 Aligned_cols=148 Identities=19% Similarity=0.250 Sum_probs=88.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC---------------------eeeec
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP---------------------FTSMA 59 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~---------------------~~~~~ 59 (174)
|+||++++ ..+..++.+++.+ +.+||+|||||||||+|+++|+.++|..+ +..++
T Consensus 16 vvGq~~v~---~~L~~~i~~~~l~-ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 16 VVGQEHVK---EVLLAALRQGRLG-HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred hcChHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 68999998 5556666777765 77799999999999999999999976321 12222
Q ss_pred ccccchh-hhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCCC
Q psy14616 60 GSEIYSL-EMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPHG 131 (174)
Q Consensus 60 ~~~~~~~-~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~ 131 (174)
..+..+. ++....+..... ...+++++.|.+ +. ...+.. ...... + +..+ |.++ +.+..
T Consensus 92 ~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-s~---~a~naL------Lk~LEep~~~t~~--Il~t-~~~~k 158 (504)
T PRK14963 92 AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-SK---SAFNAL------LKTLEEPPEHVIF--ILAT-TEPEK 158 (504)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-CH---HHHHHH------HHHHHhCCCCEEE--EEEc-CChhh
Confidence 2111110 111111111111 113344455444 21 111111 111111 2 2233 3333 56678
Q ss_pred CCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
+.+++.|||+.++|.+++.+++.+++++.+.++.
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999775543
No 68
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.9e-16 Score=130.10 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=89.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----------------------eee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----------------------TSM 58 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----------------------~~~ 58 (174)
||||++++ ..+..++++++.+ +.+||+||+|+|||++|+++|+.++|.... ..+
T Consensus 18 iiGqe~iv---~~L~~~i~~~~i~-hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~i 93 (563)
T PRK06647 18 LEGQDFVV---ETLKHSIESNKIA-NAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEI 93 (563)
T ss_pred ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEe
Confidence 68999999 5666677888865 789999999999999999999999864211 111
Q ss_pred cccc-cchhhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccCCCCC
Q psy14616 59 AGSE-IYSLEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHG 131 (174)
Q Consensus 59 ~~~~-~~~~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 131 (174)
++.. ....++....+.....| + .+++++.|.+ +. ..++..++.. .+.+ ...| |.++ +.+..
T Consensus 94 dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-s~---~a~naLLK~L-----Eepp~~~vf--I~~t-te~~k 161 (563)
T PRK06647 94 DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-SN---SAFNALLKTI-----EEPPPYIVF--IFAT-TEVHK 161 (563)
T ss_pred cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-CH---HHHHHHHHhh-----ccCCCCEEE--EEec-CChHH
Confidence 1110 00011111111111111 1 3444455555 22 1222211111 1112 2333 3344 45678
Q ss_pred CCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+.++++|||+++.|.+++.+++.++++....+
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886644
No 69
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.4e-16 Score=129.74 Aligned_cols=163 Identities=23% Similarity=0.296 Sum_probs=116.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcC-------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGK-------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~-------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
+.|.++++..+..+.+.+++.. .-|++++|+||||||||.+|+++|-+.+ +||..++.+++..++++--.
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPFf~iSGS~FVemfVGvGAs 229 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVEMFVGVGAS 229 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--CCceeccchhhhhhhcCCCcH
Confidence 4699999999999999998633 3469999999999999999999999988 78889998888776664422
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCC-------c-cceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGS-------K-VGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
.++ +..|+.++++|||......+. + +|.+.-...+++.......+++ +++| |++.-+|++|+
T Consensus 230 RVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviv--iaaT-NRpdVlD~ALl 306 (596)
T COG0465 230 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIV--IAAT-NRPDVLDPALL 306 (596)
T ss_pred HHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEE--EecC-CCcccchHhhc
Confidence 222 345888999999987332211 0 1122111222333332223333 4444 99999999999
Q ss_pred --cce-eeEecCCCCHHHHHHHHHHHhchhhhhh
Q psy14616 138 --DRM-VIIPTQPYQDEEIQAILKIRLVKNERNE 168 (174)
Q Consensus 138 --sR~-~~i~~~~~~~~e~~~il~~~l~~~~~~~ 168 (174)
.|| ..+.++.|+-....+|++-+..+....+
T Consensus 307 RpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~ 340 (596)
T COG0465 307 RPGRFDRQILVELPDIKGREQILKVHAKNKPLAE 340 (596)
T ss_pred CCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC
Confidence 788 7888999998999999998776655543
No 70
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.8e-16 Score=130.83 Aligned_cols=148 Identities=19% Similarity=0.166 Sum_probs=89.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeee-----ecccccchh---------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS-----MAGSEIYSL--------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~-----~~~~~~~~~--------- 66 (174)
||||+.++ ..+.+++++|+.+ +++||+||+|+|||++|+++|+.++|..+... ..|+.|.++
T Consensus 26 liGq~~~v---~~L~~~~~~gri~-ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 26 LIGQEAMV---RTLTNAFETGRIA-QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 68999999 5566666888876 88999999999999999999999987632111 111211110
Q ss_pred --------------hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhccc
Q psy14616 67 --------------EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAY 126 (174)
Q Consensus 67 --------------~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 126 (174)
++.++.+.....+ ..+++++.|.+ +. ...+..++ ...+.+ ++.| |.++
T Consensus 102 Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-s~---~a~naLLK-----tLEePp~~~~f--Il~t- 169 (598)
T PRK09111 102 DVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-ST---AAFNALLK-----TLEEPPPHVKF--IFAT- 169 (598)
T ss_pred ceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-CH---HHHHHHHH-----HHHhCCCCeEE--EEEe-
Confidence 0011111111111 12333454444 21 11111111 111122 2333 3333
Q ss_pred CCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 127 SSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 127 ~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+....++++++|||+++.|.+++.+++.+++++.+.++
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke 207 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE 207 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc
Confidence 45667999999999999999999999999999976544
No 71
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.67 E-value=3e-16 Score=123.60 Aligned_cols=160 Identities=24% Similarity=0.254 Sum_probs=100.8
Q ss_pred CCchHHHHHHHHHHHHHH-H-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI-K-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~-~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
+.|.+..++.+....... . -|..++++++|+||||||||++|+++|+.++. ++..+..+.+...+.+...
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~~~v~~~~l~~~~~g~~~ 201 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TFIRVVGSELVRKYIGEGA 201 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CEEecchHHHHHHhhhHHH
Confidence 468888887766555332 1 13345689999999999999999999999984 4666666555544444322
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCC------ccceeEEEe--ccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGS------KVGKLTMKT--TEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
..+ ...|+.++++++|.+.....+ ......+.. ..+.......+..+ ++++ |++..+++++
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v--I~tt-n~~~~ld~al 278 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV--IAAT-NRPDILDPAL 278 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE--EEec-CChhhCChhh
Confidence 111 123456788899887433211 000101100 00111111233444 5566 7889999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
++ || ..|+++.|+.++..+|++.++.+..
T Consensus 279 ~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~ 310 (364)
T TIGR01242 279 LRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK 310 (364)
T ss_pred cCcccCceEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 85 88 7899999999999999998765443
No 72
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.4e-16 Score=130.90 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=89.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM 58 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~ 58 (174)
||||++++ ..+.+++++++.+ +++||+||||||||++|+.+|+.++|... +..+
T Consensus 18 IiGQe~v~---~~L~~ai~~~ri~-ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 18 VAGQETVK---AILSRAAQENRVA-PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred hcCCHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 68999998 5556666788765 79999999999999999999999987421 1111
Q ss_pred cccccch-hhhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616 59 AGSEIYS-LEMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH 130 (174)
Q Consensus 59 ~~~~~~~-~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 130 (174)
+...... .++..+.+..... ...++++|+|.+ +. +.++.. ....+. .+.+| |.++ +...
T Consensus 94 d~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-t~---~a~naL------Lk~LEEP~~~~if--ILaT-t~~~ 160 (624)
T PRK14959 94 DGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-TR---EAFNAL------LKTLEEPPARVTF--VLAT-TEPH 160 (624)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-CH---HHHHHH------HHHhhccCCCEEE--EEec-CChh
Confidence 1110000 0111111111111 123445566665 22 112211 111111 23334 4444 4667
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.+.++++|||+++.|.+++.+++.++|+..+.++
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHc
Confidence 8889999999999999999999999998866443
No 73
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.5e-16 Score=130.32 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=88.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee--------eecccccchh------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT--------SMAGSEIYSL------ 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~--------~~~~~~~~~~------ 66 (174)
||||+.+++ .+.+++++|+.+ +++||+||+|||||++|+.+|+.++|..... .-.|+.|-++
T Consensus 18 ivGQe~i~~---~L~~~i~~~ri~-ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 18 ITAQEHITH---TIQNSLRMDRVG-HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred hcCcHHHHH---HHHHHHHcCCCC-eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 689999994 566677888876 7899999999999999999999998842110 0122222110
Q ss_pred -----------------hhhhhhhhhhh--c--c-CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhh
Q psy14616 67 -----------------EMNKTEEETEM--I--E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAI 122 (174)
Q Consensus 67 -----------------~~~~~~~~~~~--~--~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 122 (174)
++....+.... + . ..+++++.|.+ +. ..++. +......+ ..++ |
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-t~---~a~na------LLK~LEePp~~tv~--I 161 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-ST---AAFNA------FLKTLEEPPPHAIF--I 161 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-CH---HHHHH------HHHHHhCCCCCeEE--E
Confidence 01000011100 0 1 12334455554 21 11111 11111222 2333 3
Q ss_pred hcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 123 ~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.++ +....+.+++.|||++++|.+++.+++..+++..+.+
T Consensus 162 L~t-~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 162 FAT-TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred EEe-CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH
Confidence 333 3567899999999999999999999999999886644
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.66 E-value=3.7e-16 Score=131.39 Aligned_cols=146 Identities=20% Similarity=0.264 Sum_probs=95.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh-h---
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET-E--- 76 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 76 (174)
++||+++......+..++++++.+ +++|+|||||||||+|+++|+.++.. +..+++......++....+.. +
T Consensus 30 ~vGQe~ii~~~~~L~~~i~~~~~~--slLL~GPpGtGKTTLA~aIA~~~~~~--f~~lna~~~~i~dir~~i~~a~~~l~ 105 (725)
T PRK13341 30 FVGQDHILGEGRLLRRAIKADRVG--SLILYGPPGVGKTTLARIIANHTRAH--FSSLNAVLAGVKDLRAEVDRAKERLE 105 (725)
T ss_pred hcCcHHHhhhhHHHHHHHhcCCCc--eEEEECCCCCCHHHHHHHHHHHhcCc--ceeehhhhhhhHHHHHHHHHHHHHhh
Confidence 589999997766777788887765 89999999999999999999988743 555665422111221111111 1
Q ss_pred hc--cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhh-cccCCCCCCCHHhhcceeeEecCCCCHHHH
Q psy14616 77 MI--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIG-TAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 153 (174)
Q Consensus 77 ~~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~ 153 (174)
.. ...++++|+|.+ +. ..+...+. .......++ ++ ++.|....++++++|||.+++|++++.+++
T Consensus 106 ~~~~~~IL~IDEIh~L-n~---~qQdaLL~------~lE~g~IiL--I~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi 173 (725)
T PRK13341 106 RHGKRTILFIDEVHRF-NK---AQQDALLP------WVENGTITL--IGATTENPYFEVNKALVSRSRLFRLKSLSDEDL 173 (725)
T ss_pred hcCCceEEEEeChhhC-CH---HHHHHHHH------HhcCceEEE--EEecCCChHhhhhhHhhccccceecCCCCHHHH
Confidence 11 124566677765 33 22221111 111122222 44 444555779999999999999999999999
Q ss_pred HHHHHHHhc
Q psy14616 154 QAILKIRLV 162 (174)
Q Consensus 154 ~~il~~~l~ 162 (174)
..++++.+.
T Consensus 174 ~~IL~~~l~ 182 (725)
T PRK13341 174 HQLLKRALQ 182 (725)
T ss_pred HHHHHHHHH
Confidence 999999876
No 75
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3.8e-16 Score=126.92 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM 58 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~ 58 (174)
||||++++ ..+...+++|+.+ +.+||+||+|+|||++|+++|+.+.|... +..+
T Consensus 16 iiGqe~v~---~~L~~~I~~grl~-hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 16 LIGQESVS---KTLSLALDNNRLA-HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred ccCcHHHH---HHHHHHHHcCCCC-eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 68999999 5666666888876 78899999999999999999999965321 1112
Q ss_pred cccccc-hhhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccCCCCC
Q psy14616 59 AGSEIY-SLEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHG 131 (174)
Q Consensus 59 ~~~~~~-~~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 131 (174)
++..-. -.++..........| ..+++++.|.+ +. +.++..++.. .+.+ ++.| |.++ +++..
T Consensus 92 daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-t~---~A~NALLK~L-----EEpp~~t~F--IL~t-td~~k 159 (535)
T PRK08451 92 DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-TK---EAFNALLKTL-----EEPPSYVKF--ILAT-TDPLK 159 (535)
T ss_pred ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-CH---HHHHHHHHHH-----hhcCCceEE--EEEE-CChhh
Confidence 211100 011111111111111 13444566555 22 2222222211 1112 2333 3344 45689
Q ss_pred CCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++++++|||++++|.+++.+++.++++..+.++
T Consensus 160 L~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 160 LPATILSRTQHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred CchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999877554
No 76
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.5e-16 Score=125.19 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=87.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee--------eecccccch-------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT--------SMAGSEIYS------- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~--------~~~~~~~~~------- 65 (174)
||||+.+++ .+..++++|+.+ +++||+||||+|||++|+++|+.++|..... .-.++.|.+
T Consensus 18 iiGq~~~~~---~L~~~~~~~~~~-ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 18 ITAQEHITR---TIQNSLRMGRVG-HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred ccChHHHHH---HHHHHHHhCCcc-eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 689999994 566677888876 7799999999999999999999998742110 011111110
Q ss_pred ----------------hhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhh
Q psy14616 66 ----------------LEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIG 123 (174)
Q Consensus 66 ----------------~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 123 (174)
.++....+.....| + .++++++|++ +. ..++..+ ....+.+ ...+ |.
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-~~---~~~~~LL-----k~LEep~~~t~~--Il 162 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-SI---AAFNAFL-----KTLEEPPPHAIF--IF 162 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-CH---HHHHHHH-----HHHhcCCCCeEE--EE
Confidence 01111001110001 1 2334455554 21 1111111 1111222 2233 33
Q ss_pred cccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 124 ~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
++ +....+.+++.+||++++|.+++++++.++++..+.+
T Consensus 163 ~t-~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 163 AT-TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred Ee-CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 33 3567889999999999999999999999999987643
No 77
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=9.4e-16 Score=123.43 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=88.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC-----------------------eee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP-----------------------FTS 57 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~-----------------------~~~ 57 (174)
||||+.++ ..+...++.|+.+ +.+||+||||+|||++|+++|+.+.|... +..
T Consensus 19 iiGq~~~v---~~L~~~i~~~~i~-ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 19 ILGQDAVV---AVLKNALRFNRAA-HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred hcCcHHHH---HHHHHHHHcCCCc-eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 68999999 5666677888776 78999999999999999999999976421 111
Q ss_pred ecccccch-hhhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCC
Q psy14616 58 MAGSEIYS-LEMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSP 129 (174)
Q Consensus 58 ~~~~~~~~-~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~ 129 (174)
+++....+ .++....+..... ...+++++.|.+ +. +.++. +....+. ..+.+ |.++ +..
T Consensus 95 i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-t~---~~~n~------LLk~lEep~~~~~~--Il~t-~~~ 161 (451)
T PRK06305 95 IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHML-TK---EAFNS------LLKTLEEPPQHVKF--FLAT-TEI 161 (451)
T ss_pred eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-CH---HHHHH------HHHHhhcCCCCceE--EEEe-CCh
Confidence 11111100 0111111111111 123444455555 22 11111 1111111 22333 4444 566
Q ss_pred CCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 130 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 130 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
..+.++++|||++++|.+++++++.++++..+.+
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999986644
No 78
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=8.9e-16 Score=118.26 Aligned_cols=146 Identities=23% Similarity=0.258 Sum_probs=88.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee--------eecccccchh------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT--------SMAGSEIYSL------ 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~--------~~~~~~~~~~------ 66 (174)
|+||++++ ..+...+++|+.+ +++||+||+|+||+++|+++|+.+.|..+.. ..+-.++.-.
T Consensus 6 iiGq~~~~---~~L~~~i~~~rl~-ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 6 LIGQPLAI---ELLTAAIKQNRIA-PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred hCCHHHHH---HHHHHHHHhCCCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 68999999 6777777889876 8999999999999999999999986543100 0000000000
Q ss_pred --------------------------hhhhhhhhhhhc----cC-cEEEEEEeccCCCCCCccceeEEEeccchhhhccc
Q psy14616 67 --------------------------EMNKTEEETEMI----EG-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG 115 (174)
Q Consensus 67 --------------------------~~~~~~~~~~~~----~~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (174)
.+..+.+..... .. .+++++.|++ +. ..++..++.- .+.+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-~~---~aaNaLLK~L-----EEPp 152 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-NE---AAANALLKTL-----EEPG 152 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-CH---HHHHHHHHHH-----hCCC
Confidence 000000000000 11 2233344444 22 1222222211 1122
Q ss_pred cccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhc
Q psy14616 116 AKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 116 ~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~ 162 (174)
+..| |..+ +.+..+.|+++|||+.++|.+++++++.++|+....
T Consensus 153 ~~~f--ILi~-~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 153 NGTL--ILIA-PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred CCeE--EEEE-CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhc
Confidence 3344 3344 467899999999999999999999999999998754
No 79
>PRK04195 replication factor C large subunit; Provisional
Probab=99.64 E-value=2.3e-15 Score=122.48 Aligned_cols=152 Identities=21% Similarity=0.269 Sum_probs=98.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh-hhhhhhh----h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE-MNKTEEE----T 75 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~----~ 75 (174)
++|+++++..+..+......|.. ++++||+||||||||++|+++|+.++. .++.+++++....+ +...... .
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~-~~~lLL~GppG~GKTtla~ala~el~~--~~ielnasd~r~~~~i~~~i~~~~~~~ 92 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKP-KKALLLYGPPGVGKTSLAHALANDYGW--EVIELNASDQRTADVIERVAGEAATSG 92 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCC-CCeEEEECCCCCCHHHHHHHHHHHcCC--CEEEEcccccccHHHHHHHHHHhhccC
Confidence 58999999888887776666664 489999999999999999999999984 46777766543221 1111111 1
Q ss_pred hhc---cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCH-HhhcceeeEecCCCCHH
Q psy14616 76 EMI---EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPI-DLLDRMVIIPTQPYQDE 151 (174)
Q Consensus 76 ~~~---~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~-~l~sR~~~i~~~~~~~~ 151 (174)
.++ ...++++++|.+.... +..+.. .+.......+..+ |+++ |.+..+.+ ++++||..++|++++.+
T Consensus 93 sl~~~~~kvIiIDEaD~L~~~~-d~~~~~-----aL~~~l~~~~~~i--Ili~-n~~~~~~~k~Lrsr~~~I~f~~~~~~ 163 (482)
T PRK04195 93 SLFGARRKLILLDEVDGIHGNE-DRGGAR-----AILELIKKAKQPI--ILTA-NDPYDPSLRELRNACLMIEFKRLSTR 163 (482)
T ss_pred cccCCCCeEEEEecCccccccc-chhHHH-----HHHHHHHcCCCCE--EEec-cCccccchhhHhccceEEEecCCCHH
Confidence 122 2246667787763221 111100 0111112233333 4455 56667766 89999999999999999
Q ss_pred HHHHHHHHHhchh
Q psy14616 152 EIQAILKIRLVKN 164 (174)
Q Consensus 152 e~~~il~~~l~~~ 164 (174)
++..+++..+..+
T Consensus 164 ~i~~~L~~i~~~e 176 (482)
T PRK04195 164 SIVPVLKRICRKE 176 (482)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999877543
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.63 E-value=1.3e-15 Score=119.39 Aligned_cols=148 Identities=23% Similarity=0.265 Sum_probs=88.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM 58 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~ 58 (174)
+|||++++ ..+...+++|+.+ +.+||+||||+|||++|+.+|+.+.+... +..+
T Consensus 16 iig~~~~~---~~l~~~~~~~~~~-~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 16 VIGQEHIV---QTLKNAIKNGRIA-HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 68999999 4555566778765 78999999999999999999999865421 1112
Q ss_pred cccccchh-hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC
Q psy14616 59 AGSEIYSL-EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG 131 (174)
Q Consensus 59 ~~~~~~~~-~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 131 (174)
++...... ++....+.+...| ..+++++.|.+ +. ...+..+ ....+. .+..+ |.++ +++..
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-~~---~~~~~Ll-----~~le~~~~~~~l--Il~~-~~~~~ 159 (355)
T TIGR02397 92 DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-SK---SAFNALL-----KTLEEPPEHVVF--ILAT-TEPHK 159 (355)
T ss_pred eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-CH---HHHHHHH-----HHHhCCccceeE--EEEe-CCHHH
Confidence 22111110 1111222222211 13444555555 21 1111111 111111 22333 3444 56677
Q ss_pred CCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+.+++++||+.+.|.+++++++.++++.++.++
T Consensus 160 l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 160 IPATILSRCQRFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred HHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc
Confidence 889999999999999999999999999876544
No 81
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.7e-15 Score=122.72 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=88.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------- 65 (174)
++||+++. ..+.+++++++.+ +.+||+||+|+|||++|+.+|+.++|...-....++.|..
T Consensus 18 iiGq~~i~---~~L~~~i~~~~i~-hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 18 VIGQEIVV---RILKNAVKLQRVS-HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred ccChHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 68999999 5666677888765 7789999999999999999999998631111011111110
Q ss_pred -------h-hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616 66 -------L-EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH 130 (174)
Q Consensus 66 -------~-~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~ 130 (174)
. ++..+.+.....| ..+++++.|.+ +. ...+. +...... + ..++ |.++ +...
T Consensus 94 daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-t~---~a~na------LLk~LEepp~~~v~--Il~t-t~~~ 160 (486)
T PRK14953 94 DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-TK---EAFNA------LLKTLEEPPPRTIF--ILCT-TEYD 160 (486)
T ss_pred eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-CH---HHHHH------HHHHHhcCCCCeEE--EEEE-CCHH
Confidence 0 0111111221111 13444455554 21 11111 1111111 2 2333 3333 4567
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.+++++.+||+++.|.+++.+++..+++.++..+
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc
Confidence 7889999999999999999999999999876543
No 82
>KOG0728|consensus
Probab=99.62 E-value=9.2e-16 Score=112.43 Aligned_cols=139 Identities=23% Similarity=0.288 Sum_probs=96.7
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh-h-------hhhccCcEEEEEEeccCC
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE-E-------TEMIEGEVVEIQIERPAT 92 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~i~~~~id~~~~ 92 (174)
|...|+++|||||||||||.+|+++|+...|. |+.++++.+...++++-.- . .+-.|..++.+|||.+.+
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahht~c~--firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs 254 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 254 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhhcceE--EEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeeccccccc
Confidence 55567999999999999999999999998855 8999999988888776541 1 133588899999999843
Q ss_pred CC------CCc-cceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHHh
Q psy14616 93 GL------GSK-VGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 93 ~~------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~l 161 (174)
.. +|+ .|...+. .+.++.+ ...+.+- .|.++ |+..-++|+|+ .|+ ..|+|++|+++...+||+.+-
T Consensus 255 ~r~e~~~ggdsevqrtmlellnqldgf-eatknik-vimat-nridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 255 SRVESGSGGDSEVQRTMLELLNQLDGF-EATKNIK-VIMAT-NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccCCCCccHHHHHHHHHHHHhcccc-ccccceE-EEEec-cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 32 121 1211111 0111111 1122222 14444 89999999999 678 789999999999999999876
Q ss_pred chh
Q psy14616 162 VKN 164 (174)
Q Consensus 162 ~~~ 164 (174)
.+.
T Consensus 332 rkm 334 (404)
T KOG0728|consen 332 RKM 334 (404)
T ss_pred hhh
Confidence 543
No 83
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=3.2e-15 Score=124.20 Aligned_cols=146 Identities=16% Similarity=0.088 Sum_probs=87.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee--eecccccch-------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT--SMAGSEIYS------------- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~--~~~~~~~~~------------- 65 (174)
++||++++ ..+..++..++.+ +++||+||+|+|||++|+++|+.++|..... ...|+.|-.
T Consensus 18 liGq~~i~---~~L~~~l~~~rl~-~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 18 LVGQEAIA---TTLKNALISNRIA-PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred ccChHHHH---HHHHHHHHcCCCC-ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 68999999 4555566777765 7999999999999999999999998752110 011111100
Q ss_pred ----------hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCC
Q psy14616 66 ----------LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSS 128 (174)
Q Consensus 66 ----------~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~ 128 (174)
..+.++.+.+...+ ..+++++.|.+ +. +.++.. ....+.+ ..+| |.++ ++
T Consensus 94 ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-t~---~a~naL------LK~LEePp~~tvf--IL~t-~~ 160 (620)
T PRK14948 94 EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-ST---AAFNAL------LKTLEEPPPRVVF--VLAT-TD 160 (620)
T ss_pred EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-CH---HHHHHH------HHHHhcCCcCeEE--EEEe-CC
Confidence 01111111111111 13444556555 22 112211 1111222 2334 4444 45
Q ss_pred CCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+..+.++++|||+.+.|.+++.+++..+++....+
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999888875544
No 84
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.7e-15 Score=126.53 Aligned_cols=162 Identities=22% Similarity=0.315 Sum_probs=102.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCC----ceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhh-hhhh--
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAG----RAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEM-NKTE-- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~----~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~-~~~~-- 72 (174)
||||++|+.++.......+.|...+ ..+||.||+|||||.+|++||..| |.+..+++++.+.+..... ....
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGa 572 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGA 572 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCC
Confidence 6999999999888888888776542 488999999999999999999998 4445567777665543211 0000
Q ss_pred --------------hhhhhcc-CcEEEEEEeccCCCC--------------CCccc-eeEEEeccchhhhccccccchhh
Q psy14616 73 --------------EETEMIE-GEVVEIQIERPATGL--------------GSKVG-KLTMKTTEMETSYDLGAKMIEAI 122 (174)
Q Consensus 73 --------------~~~~~~~-~~i~~~~id~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~i 122 (174)
+..+..| ..|+++||+++ .+. .|..+ .+.|+..-+-.+.+++...+...
T Consensus 573 PPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 573 PPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred CCCCceeccccchhHhhhcCCCeEEEechhhhc-CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence 1112222 36778899887 221 11222 34444444344444433222111
Q ss_pred hcc--cCCC------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 123 GTA--YSSP------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 123 ~~~--~~~~------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+.. .... ..+.|.++.|+ .+|.|.+++.+++.+|+...+..
T Consensus 652 ~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 652 ADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred ccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 100 0000 12689999999 69999999999999999987744
No 85
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=4e-15 Score=117.34 Aligned_cols=148 Identities=19% Similarity=0.204 Sum_probs=89.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC--------C--eeeecccccch-hhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT--------P--FTSMAGSEIYS-LEMN 69 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~--------~--~~~~~~~~~~~-~~~~ 69 (174)
++||+.++ ..+...+++|+.+ ++++||||||+|||++|+++|+.+++.. . ...++...... .++.
T Consensus 19 iig~~~~~---~~l~~~i~~~~~~-~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 94 (367)
T PRK14970 19 VVGQSHIT---NTLLNAIENNHLA-QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR 94 (367)
T ss_pred cCCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH
Confidence 68999998 6666677888765 8999999999999999999999987521 1 11122211110 1111
Q ss_pred hhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccCCCCCCCHHhhcceeeE
Q psy14616 70 KTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHGIPIDLLDRMVII 143 (174)
Q Consensus 70 ~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~l~sR~~~i 143 (174)
...+.+...| ..++++++|.+ +. ...+..+ ....+.+ ...+ +.++ +....+.+++.|||..+
T Consensus 95 ~l~~~~~~~p~~~~~kiviIDE~~~l-~~---~~~~~ll-----~~le~~~~~~~~--Il~~-~~~~kl~~~l~sr~~~v 162 (367)
T PRK14970 95 NLIDQVRIPPQTGKYKIYIIDEVHML-SS---AAFNAFL-----KTLEEPPAHAIF--ILAT-TEKHKIIPTILSRCQIF 162 (367)
T ss_pred HHHHHHhhccccCCcEEEEEeChhhc-CH---HHHHHHH-----HHHhCCCCceEE--EEEe-CCcccCCHHHHhcceeE
Confidence 2112221211 23445566655 21 1111111 1111112 2233 3344 45678999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhchh
Q psy14616 144 PTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 144 ~~~~~~~~e~~~il~~~l~~~ 164 (174)
++.+++++++..++.....++
T Consensus 163 ~~~~~~~~~l~~~l~~~~~~~ 183 (367)
T PRK14970 163 DFKRITIKDIKEHLAGIAVKE 183 (367)
T ss_pred ecCCccHHHHHHHHHHHHHHc
Confidence 999999999999998866443
No 86
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.8e-15 Score=123.67 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=89.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC-----------------------eee
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP-----------------------FTS 57 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~-----------------------~~~ 57 (174)
||||++++ ..+..+++.|+.+ +.+||+||+|+|||++|+.+|+.++|..+ +..
T Consensus 19 viGq~~~~---~~L~~~i~~~~l~-hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ 94 (614)
T PRK14971 19 VVGQEALT---TTLKNAIATNKLA-HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHE 94 (614)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC-eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEE
Confidence 68999999 5566667888876 77999999999999999999999986421 111
Q ss_pred ecccccc-hhhhhhhhhhhhhcc----C-cEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCC
Q psy14616 58 MAGSEIY-SLEMNKTEEETEMIE----G-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSP 129 (174)
Q Consensus 58 ~~~~~~~-~~~~~~~~~~~~~~~----~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~ 129 (174)
+++.+.. ..++....+.....| . .+++++.|.+ +. ..++. +......+ +.+| |.++ +..
T Consensus 95 ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-s~---~a~na------LLK~LEepp~~tif--IL~t-t~~ 161 (614)
T PRK14971 95 LDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-SQ---AAFNA------FLKTLEEPPSYAIF--ILAT-TEK 161 (614)
T ss_pred ecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-CH---HHHHH------HHHHHhCCCCCeEE--EEEe-CCc
Confidence 1111100 001111111111111 1 2344455554 22 11111 11122222 2333 3344 355
Q ss_pred CCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 130 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 130 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
..+.++++|||++++|.+++.+++..+++..+.++
T Consensus 162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e 196 (614)
T PRK14971 162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE 196 (614)
T ss_pred hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999999999998866554
No 87
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=2e-15 Score=116.64 Aligned_cols=143 Identities=16% Similarity=0.228 Sum_probs=88.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC------eeeecc--cccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP------FTSMAG--SEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~------~~~~~~--~~~~~~~~~~~~ 72 (174)
|+||++++ ..+...++.|+.+ +.+||+||+|+|||++|+.+|+.+.|... +..+.. +..+ .+.++.
T Consensus 6 i~g~~~~~---~~l~~~~~~~~~~-ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i--~v~~ir 79 (313)
T PRK05564 6 IIGHENIK---NRIKNSIIKNRFS-HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSI--GVDDIR 79 (313)
T ss_pred ccCcHHHH---HHHHHHHHcCCCC-ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCC--CHHHHH
Confidence 68999999 5556666888876 88899999999999999999999865421 111211 1111 111222
Q ss_pred hhhh---hc----cCc-EEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCCCCHHhhcceeeE
Q psy14616 73 EETE---MI----EGE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLLDRMVII 143 (174)
Q Consensus 73 ~~~~---~~----~~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~i 143 (174)
+..+ .. ..+ +++.+.|++ +. +.++..++.-+ +. +++.| |.++ +.++.+.++++|||+++
T Consensus 80 ~~~~~~~~~p~~~~~kv~iI~~ad~m-~~---~a~naLLK~LE-----epp~~t~~--il~~-~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 80 NIIEEVNKKPYEGDKKVIIIYNSEKM-TE---QAQNAFLKTIE-----EPPKGVFI--ILLC-ENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHHHHhcCcccCCceEEEEechhhc-CH---HHHHHHHHHhc-----CCCCCeEE--EEEe-CChHhCcHHHHhhceee
Confidence 1111 11 112 334455665 32 22332222111 11 22334 3344 45689999999999999
Q ss_pred ecCCCCHHHHHHHHHHHh
Q psy14616 144 PTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 144 ~~~~~~~~e~~~il~~~l 161 (174)
.|.+++++++.+++++..
T Consensus 148 ~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKY 165 (313)
T ss_pred eCCCcCHHHHHHHHHHHh
Confidence 999999999999998753
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=2.8e-15 Score=117.61 Aligned_cols=48 Identities=27% Similarity=0.497 Sum_probs=42.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
||||++++ ..+.+.+.+|+.+ |.+||+||+|+||+++|+++|+.+.|.
T Consensus 21 iiGq~~~~---~~L~~~~~~~rl~-HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 21 LFGHAAAE---AALLDAYRSGRLH-HAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred ccChHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 68999999 6666777888877 889999999999999999999999764
No 89
>KOG0740|consensus
Probab=99.61 E-value=1.5e-15 Score=119.31 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=110.0
Q ss_pred CCchHHHHHHHHHHH-------HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVL-------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~-------~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
+.|.+.+++.+.... +....-+.+.+.+||.||||+|||.+++++|-+.+ ..|..++++.+.+.++|+.+
T Consensus 155 i~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~--atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 155 IAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG--ATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred CcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhc--ceEeeccHHHhhhhccChHHH
Confidence 357777886655433 22233445578999999999999999999999998 55888999999999998875
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCCccc--eeEEEeccchhhhcc---cc-ccchhhhcccCCCCCCCHHhhcc
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGSKVG--KLTMKTTEMETSYDL---GA-KMIEAIGTAYSSPHGIPIDLLDR 139 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~-~~~~~i~~~~~~~~~l~~~l~sR 139 (174)
..+ ...|..++++|+|+++....+... +..++..++.+.... ++ .++ .++++ |.|..++.+++.|
T Consensus 233 ~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvl-vigaT-N~P~e~Dea~~Rr 310 (428)
T KOG0740|consen 233 LVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVL-VIGAT-NRPWELDEAARRR 310 (428)
T ss_pred HHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEE-EEecC-CCchHHHHHHHHH
Confidence 223 334777888899988655422111 122222222211111 22 222 25565 9999999999999
Q ss_pred e-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 140 M-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 140 ~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
| .+++++.|+.+....++.+.+.+.
T Consensus 311 f~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 311 FVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred hhceeeecCCCHHHHHHHHHHHHHhC
Confidence 9 678889889999998888876443
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.60 E-value=7e-15 Score=124.85 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=99.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh----------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL---------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---------- 66 (174)
|+||+++++.+.......+.|.. |..+++|+||||||||++|+++|+.+++. ++.++.+.+...
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~--~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH--LERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC--eEEEeCchhhhcccHHHHhcCC
Confidence 68999999888877776665543 33468999999999999999999999743 566655443221
Q ss_pred --hhh-----hhhhhhhhcc-CcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCC-
Q psy14616 67 --EMN-----KTEEETEMIE-GEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSP- 129 (174)
Q Consensus 67 --~~~-----~~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 129 (174)
+++ .........| +.++++|+|++ ++ +.++. .+.+ ......++.+.++ |+|++...
T Consensus 534 ~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-~~---~~~~~Ll~~ld~g~~~d-~~g~~vd~~~~ii--i~Tsn~g~~ 606 (731)
T TIGR02639 534 PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-HP---DIYNILLQVMDYATLTD-NNGRKADFRNVIL--IMTSNAGAS 606 (731)
T ss_pred CCCcccchhhHHHHHHHhCCCeEEEEechhhc-CH---HHHHHHHHhhccCeeec-CCCcccCCCCCEE--EECCCcchh
Confidence 000 1111112223 45677899887 32 11111 1111 1233445566666 55552110
Q ss_pred -----------------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 130 -----------------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 130 -----------------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
..+.|.+++|+ .++.|.+++.+++.+|+++.+.+
T Consensus 607 ~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 607 EMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred hhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 12678999999 89999999999999999998754
No 91
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.59 E-value=7.5e-15 Score=124.85 Aligned_cols=157 Identities=25% Similarity=0.317 Sum_probs=101.3
Q ss_pred CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|+|.+.+++.+..+.... .-|..+++++||+||||||||++|+++|..++. +++.+++..+.+.+.+...
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~i~i~~~~i~~~~~g~~~ 257 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YFISINGPEIMSKYYGESE 257 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eEEEEecHHHhcccccHHH
Confidence 468888887777665432 224456789999999999999999999999984 4777777666555544433
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCCcccee--EEEe---ccchhhhccccccchhhhcccCCCCCCCHHhhc-
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGSKVGKL--TMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD- 138 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s- 138 (174)
+.+ ...+..++++|+|.+....+...+.. .+.. ..+.........++ ++++ |++..+++++++
T Consensus 258 ~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv--I~at-n~~~~ld~al~r~ 334 (733)
T TIGR01243 258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV--IGAT-NRPDALDPALRRP 334 (733)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE--Eeec-CChhhcCHHHhCc
Confidence 111 22355678889988744321111100 0000 01111111222333 4455 888999999986
Q ss_pred -ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 -RM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 -R~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
|| ..+.++.|+.++..+|++....
T Consensus 335 gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 335 GRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred hhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 88 7899999999999999987553
No 92
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=2.3e-15 Score=116.92 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=85.4
Q ss_pred CCc-hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-------------
Q psy14616 1 MVG-QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL------------- 66 (174)
Q Consensus 1 iiG-~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~------------- 66 (174)
|+| |+.++ ..+...+++|+.+ +.+||+||+|+|||++|+.+|+.+.|..+.....++.|.++
T Consensus 7 i~~~q~~~~---~~L~~~~~~~~l~-ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 7 LTALQPVVV---KMLQNSIAKNRLS-HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred HHhhHHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 456 99999 5666667888876 88899999999999999999999866431111111111110
Q ss_pred --------hhhhhhhhhh------hc-c-CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCC
Q psy14616 67 --------EMNKTEEETE------MI-E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSS 128 (174)
Q Consensus 67 --------~~~~~~~~~~------~~-~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~ 128 (174)
.+.++.+..+ .. . ..+++++.|++ +. +.++..+ .+.+. .++.| |.++ +.
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-~~---~a~NaLL------K~LEEPp~~~~~--Il~t-~~ 149 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-TA---SAANSLL------KFLEEPSGGTTA--ILLT-EN 149 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-CH---HHHHHHH------HHhcCCCCCceE--EEEe-CC
Confidence 0001111110 00 1 12333455544 22 2222211 12222 22333 3344 46
Q ss_pred CCCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616 129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
+..+.|+++|||++++|.+++.+++.++++..
T Consensus 150 ~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 150 KHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 67999999999999999999999998888764
No 93
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.59 E-value=2.5e-15 Score=133.46 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=85.0
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh----------hh--------------------
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE----------MN-------------------- 69 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~----------~~-------------------- 69 (174)
-|..+++++||+||||||||.+|+++|.+.+ ++|+.++.+++.... ++
T Consensus 1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~--VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSY--VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHhcC--CceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 3556689999999999999999999999988 778888877665321 00
Q ss_pred -----------hh---------hhhh-hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhh---ccccccchhhhcc
Q psy14616 70 -----------KT---------EEET-EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSY---DLGAKMIEAIGTA 125 (174)
Q Consensus 70 -----------~~---------~~~~-~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~ 125 (174)
.. -+.| ...|+.|.++|||.+..... ....+......+.... ...++++ ||+|
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-~~ltL~qLLneLDg~~~~~s~~~VIV--IAAT 1779 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-NYLSLGLLVNSLSRDCERCSTRNILV--IAST 1779 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-ceehHHHHHHHhccccccCCCCCEEE--EEeC
Confidence 00 0222 33578889999999843311 1111101111121111 1123333 5555
Q ss_pred cCCCCCCCHHhhc--ce-eeEecCCCCHHHHHHHHH
Q psy14616 126 YSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILK 158 (174)
Q Consensus 126 ~~~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~ 158 (174)
|+|..+||||++ || ..|.++.|+..+..+++.
T Consensus 1780 -NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1780 -HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred -CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHH
Confidence 999999999996 99 788888777666655554
No 94
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.8e-15 Score=121.71 Aligned_cols=147 Identities=20% Similarity=0.183 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeee-eccccc----------------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS-MAGSEI---------------- 63 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~-~~~~~~---------------- 63 (174)
||||+++++ .+...+.+++.+ +.+||+||+|+|||++|+.+|+.++|...... ..|+.+
T Consensus 18 iiGq~~~~~---~L~~~i~~~~i~-~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 18 LVGQEHVVQ---TLRNAIAEGRVA-HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred hcCCHHHHH---HHHHHHHhCCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 689999994 455566777754 78899999999999999999999976432110 011111
Q ss_pred ------ch-hhhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCC
Q psy14616 64 ------YS-LEMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPH 130 (174)
Q Consensus 64 ------~~-~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ 130 (174)
.. .++..+.+..... ...++++++|.+ +. +..+..++ ...+. .+.+| |..+ +...
T Consensus 94 i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-~~---~a~naLLk-----~LEepp~~tv~--Il~t-~~~~ 161 (585)
T PRK14950 94 MDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML-ST---AAFNALLK-----TLEEPPPHAIF--ILAT-TEVH 161 (585)
T ss_pred EeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-CH---HHHHHHHH-----HHhcCCCCeEE--EEEe-CChh
Confidence 00 0111111111111 112344455554 21 11111111 01111 22333 3344 4567
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.+.++++|||+++.|.+++.+++..+++....+
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999886544
No 95
>KOG0652|consensus
Probab=99.58 E-value=4.1e-15 Score=109.63 Aligned_cols=143 Identities=20% Similarity=0.254 Sum_probs=93.0
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh----h----hhhhccCcEEEEEEeccC
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE----E----ETEMIEGEVVEIQIERPA 91 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~i~~~~id~~~ 91 (174)
-|..||+++|+|||||||||.+|++-|...+. .|..+.+-.+..++++.-. | ..+..|..|+++|+|.+.
T Consensus 200 lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--TFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIG 277 (424)
T KOG0652|consen 200 LGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIG 277 (424)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--hHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhc
Confidence 46778899999999999999999999987763 3555554444444443322 1 124567788889999873
Q ss_pred CCC------CC-ccceeEEEeccchhhhcccccc-chhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHH
Q psy14616 92 TGL------GS-KVGKLTMKTTEMETSYDLGAKM-IEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 92 ~~~------~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~ 160 (174)
.+. ++ +.|...+ ..+.+...++..- +-.|+++ |+..-++|+|+ .|+ ..|+|+.|+++...+|++.+
T Consensus 278 tKRfDSek~GDREVQRTML--ELLNQLDGFss~~~vKviAAT-NRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIH 354 (424)
T KOG0652|consen 278 TKRFDSEKAGDREVQRTML--ELLNQLDGFSSDDRVKVIAAT-NRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIH 354 (424)
T ss_pred cccccccccccHHHHHHHH--HHHHhhcCCCCccceEEEeec-ccccccCHHHhhcccccccccCCCCChHHHHHHHHHh
Confidence 332 11 1111111 1122222332221 1114555 99999999998 677 78999999999999999988
Q ss_pred hchhhhh
Q psy14616 161 LVKNERN 167 (174)
Q Consensus 161 l~~~~~~ 167 (174)
-.+....
T Consensus 355 sRKMnv~ 361 (424)
T KOG0652|consen 355 SRKMNVS 361 (424)
T ss_pred hhhcCCC
Confidence 7665433
No 96
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.58 E-value=7.1e-15 Score=124.25 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=99.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-----hhh--
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-----EMN-- 69 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-----~~~-- 69 (174)
|+||+++++.+.......+.|.. |..++||+||||||||++|+.+|+.++ .+++.++++.+... .++
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--CCcEEeechhhcccccHHHHcCCC
Confidence 68999999888888777665543 234799999999999999999999997 45666665544220 111
Q ss_pred ----------hhhhhhhhcc-CcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCC--
Q psy14616 70 ----------KTEEETEMIE-GEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSS-- 128 (174)
Q Consensus 70 ----------~~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 128 (174)
.+.+.....| +.++++|+|++ +. +.++. .+.+. .....++.++++ |+|++..
T Consensus 538 ~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-~~---~v~~~LLq~ld~G~ltd~-~g~~vd~rn~ii--I~TsN~g~~ 610 (758)
T PRK11034 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-HP---DVFNLLLQVMDNGTLTDN-NGRKADFRNVVL--VMTTNAGVR 610 (758)
T ss_pred CCcccccccchHHHHHHhCCCcEEEeccHhhh-hH---HHHHHHHHHHhcCeeecC-CCceecCCCcEE--EEeCCcCHH
Confidence 0011111123 46778899988 32 11111 11111 122345556666 5565311
Q ss_pred ----------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 129 ----------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 129 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
...+.|.++.|+ .++.|.+++.+++.+|+...+.+
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 022679999999 79999999999999999887754
No 97
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.58 E-value=6.8e-15 Score=123.18 Aligned_cols=159 Identities=20% Similarity=0.292 Sum_probs=104.3
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
+.|.+.++..+..+....+. +...+++++|+||||||||++++++|..++ .++..++++++.....+...
T Consensus 154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f~~is~~~~~~~~~g~~~~ 231 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVEMFVGVGAS 231 (644)
T ss_pred HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCEEEEehHHhHHhhhcccHH
Confidence 35778888777777665542 222357899999999999999999999998 55777777665544433322
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCCc------cc--eeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGSK------VG--KLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
..+ ...|..++++|+|.+....+.. .. .+.-....++...+....++ |+++ |++..++++++
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv--IaaT-N~p~~lD~Al~ 308 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV--IAAT-NRPDVLDPALL 308 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE--EEec-CChhhcCHHHh
Confidence 222 2346678888999874332110 00 00000011122222223344 5555 89999999999
Q ss_pred c--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 138 D--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+ || ..+.++.|+.++..+|++.++.+.
T Consensus 309 RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 309 RPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred CCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 5 99 889999999999999999987654
No 98
>KOG0727|consensus
Probab=99.58 E-value=8.7e-16 Score=112.67 Aligned_cols=138 Identities=22% Similarity=0.261 Sum_probs=92.3
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh----hhh----hhccCcEEEEEEeccCC
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE----EET----EMIEGEVVEIQIERPAT 92 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~i~~~~id~~~~ 92 (174)
|.-|++++|+|||||||||++++++|+... ..|+.+.++.+..+++++-. |.- +..|..++++|+|.+..
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~--a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiat 262 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT 262 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccc--hheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh
Confidence 666789999999999999999999999775 55888998888877776643 222 44577888899998732
Q ss_pred C-C----C--CccceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHHh
Q psy14616 93 G-L----G--SKVGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 93 ~-~----~--~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~l 161 (174)
+ + + .+.|.+.+. .+.++.+..-.|+-+ |+++ |+...++|+|+ .|+ ..|+|+-++..+.+-+..-..
T Consensus 263 krfdaqtgadrevqril~ellnqmdgfdq~~nvkv--imat-nradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 263 KRFDAQTGADREVQRILIELLNQMDGFDQTTNVKV--IMAT-NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred hhccccccccHHHHHHHHHHHHhccCcCcccceEE--EEec-CcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 2 2 1 122322211 122233322334333 4555 89999999999 688 789999777666655554443
Q ss_pred ch
Q psy14616 162 VK 163 (174)
Q Consensus 162 ~~ 163 (174)
.+
T Consensus 340 sk 341 (408)
T KOG0727|consen 340 SK 341 (408)
T ss_pred hc
Confidence 33
No 99
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=5.8e-15 Score=125.37 Aligned_cols=155 Identities=22% Similarity=0.204 Sum_probs=90.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~ 70 (174)
+||+++.+.. +...+.... ..+++|+||||||||++++++|+.+-. ...+..++.+.+.. .+.++
T Consensus 184 ~igr~~ei~~---~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~ 258 (731)
T TIGR02639 184 LIGREDELER---TIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGD 258 (731)
T ss_pred ccCcHHHHHH---HHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccch
Confidence 5898888854 444444433 359999999999999999999998711 12344555444431 22233
Q ss_pred hh-------hhhhh-ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC----CCCCCCHHhhc
Q psy14616 71 TE-------EETEM-IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS----SPHGIPIDLLD 138 (174)
Q Consensus 71 ~~-------~~~~~-~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~l~s 138 (174)
.+ +.+.. .+..++++|+|.++.......+..... ..+......+...+ |++|+. +....++++.+
T Consensus 259 ~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L~~~l~~g~i~~--IgaTt~~e~~~~~~~d~al~r 335 (731)
T TIGR02639 259 FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLLKPALSSGKLRC--IGSTTYEEYKNHFEKDRALSR 335 (731)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHHHHHHhCCCeEE--EEecCHHHHHHHhhhhHHHHH
Confidence 22 22211 133556667777643211111110000 00111112222233 676653 23568999999
Q ss_pred ceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 139 RMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 139 R~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
||+.|++.+|+.++..+||+.....
T Consensus 336 Rf~~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 336 RFQKIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred hCceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999986543
No 100
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=6.5e-15 Score=120.83 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=94.0
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC--------CCCCeeeeccccc------ch-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG--------PDTPFTSMAGSEI------YS- 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~--------~~~~~~~~~~~~~------~~- 65 (174)
++||+.+++.+... +.... +.+++|+||||||||++|+++.+... .+.+|+.+++... +.
T Consensus 67 iiGqs~~i~~l~~a---l~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~ 141 (531)
T TIGR02902 67 IIGQEEGIKALKAA---LCGPN--PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIAD 141 (531)
T ss_pred eeCcHHHHHHHHHH---HhCCC--CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccch
Confidence 58999998666543 33322 36999999999999999999987532 1245777776431 00
Q ss_pred hhhhhhhh-----------------hh---hhc-cCcEEEEEEeccCCCCCCccce----------eEEEeccch-----
Q psy14616 66 LEMNKTEE-----------------ET---EMI-EGEVVEIQIERPATGLGSKVGK----------LTMKTTEME----- 109 (174)
Q Consensus 66 ~~~~~~~~-----------------~~---~~~-~~~i~~~~id~~~~~~~~~~~~----------~~~~~~~~~----- 109 (174)
..++...+ .. ... .|.++++++|++ +. ..++ ..+...+..
T Consensus 142 ~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-~~---~~q~~LL~~Le~~~~~~~~~~~~~~~~~ 217 (531)
T TIGR02902 142 PLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-HP---VQMNKLLKVLEDRKVFLDSAYYNSENPN 217 (531)
T ss_pred hhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-CH---HHHHHHHHHHHhCeeeeccccccccCcc
Confidence 00000000 00 011 245667788877 33 1222 111110000
Q ss_pred ------hhh-ccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 110 ------TSY-DLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 110 ------~~~-~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
..+ .--+.-+..+++|++.+..++|++++||..+.|++|+.+|+.+++++.+.+..
T Consensus 218 ~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~ 280 (531)
T TIGR02902 218 IPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIG 280 (531)
T ss_pred cccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcC
Confidence 000 01112233367777889999999999999999999999999999999876543
No 101
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=9.5e-15 Score=114.07 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC-----Ceeee-cccccchhh-------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT-----PFTSM-AGSEIYSLE------- 67 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~-----~~~~~-~~~~~~~~~------- 67 (174)
++||++++ ..+..++++|+.+ +.+||+||+|+|||++|+.+|+.+.|.. +.... .++.+..+.
T Consensus 25 l~Gh~~a~---~~L~~a~~~grl~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~h 100 (351)
T PRK09112 25 LFGHEEAE---AFLAQAYREGKLH-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAH 100 (351)
T ss_pred ccCcHHHH---HHHHHHHHcCCCC-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCC
Confidence 68999999 6777777889876 7899999999999999999999997621 11000 111110000
Q ss_pred ----------------------hhhhhhhhhhc-----cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--c
Q psy14616 68 ----------------------MNKTEEETEMI-----EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--G 115 (174)
Q Consensus 68 ----------------------~~~~~~~~~~~-----~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 115 (174)
+.++.+..+.+ .| .+++++.|.+ +. ..++..++ .... .
T Consensus 101 Pdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-~~---~aanaLLk------~LEEpp~ 170 (351)
T PRK09112 101 PNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-NR---NAANAILK------TLEEPPA 170 (351)
T ss_pred CCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-CH---HHHHHHHH------HHhcCCC
Confidence 00000000000 11 2334455544 22 11221111 1111 2
Q ss_pred cccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616 116 AKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 116 ~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
+..| +..+ +.+..+.|+++|||+.++|++++.+++.++|+..
T Consensus 171 ~~~f--iLit-~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 171 RALF--ILIS-HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred CceE--EEEE-CChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence 2333 2333 4577889999999999999999999999999984
No 102
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.56 E-value=2e-14 Score=111.12 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhh-hhhhhh---
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNK-TEEETE--- 76 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 76 (174)
++||+++++ .+...+++|+.+ +.++|+||||+|||++|+++++.++.+ +..+++.......+.. ..+...
T Consensus 23 ~~~~~~~~~---~l~~~~~~~~~~-~~lll~G~~G~GKT~la~~l~~~~~~~--~~~i~~~~~~~~~i~~~l~~~~~~~~ 96 (316)
T PHA02544 23 CILPAADKE---TFKSIVKKGRIP-NMLLHSPSPGTGKTTVAKALCNEVGAE--VLFVNGSDCRIDFVRNRLTRFASTVS 96 (316)
T ss_pred hcCcHHHHH---HHHHHHhcCCCC-eEEEeeCcCCCCHHHHHHHHHHHhCcc--ceEeccCcccHHHHHHHHHHHHHhhc
Confidence 589999995 455555677765 566669999999999999999998754 4555554411001101 111111
Q ss_pred h--ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHH
Q psy14616 77 M--IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 154 (174)
Q Consensus 77 ~--~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~ 154 (174)
. ..+.++++++|.+... +.+.. +. ..++.. ..+..+ +.++ |....++++++|||..+.++.|+.++..
T Consensus 97 ~~~~~~vliiDe~d~l~~~---~~~~~-L~-~~le~~--~~~~~~--Ilt~-n~~~~l~~~l~sR~~~i~~~~p~~~~~~ 166 (316)
T PHA02544 97 LTGGGKVIIIDEFDRLGLA---DAQRH-LR-SFMEAY--SKNCSF--IITA-NNKNGIIEPLRSRCRVIDFGVPTKEEQI 166 (316)
T ss_pred ccCCCeEEEEECcccccCH---HHHHH-HH-HHHHhc--CCCceE--EEEc-CChhhchHHHHhhceEEEeCCCCHHHHH
Confidence 1 1234566677765121 11111 11 001110 122333 4455 6778899999999999999999998888
Q ss_pred HHHHHH
Q psy14616 155 AILKIR 160 (174)
Q Consensus 155 ~il~~~ 160 (174)
++++..
T Consensus 167 ~il~~~ 172 (316)
T PHA02544 167 EMMKQM 172 (316)
T ss_pred HHHHHH
Confidence 776653
No 103
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.56 E-value=2e-14 Score=111.88 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=86.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC---Ceeeecccccchhh----------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT---PFTSMAGSEIYSLE---------- 67 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~---------- 67 (174)
++|++.+++.+.. +++++..+ +++|+||||||||++|+++++.+.+.. .+..+++.++....
T Consensus 17 ~~g~~~~~~~L~~---~~~~~~~~--~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 17 ILGQDEVVERLSR---AVDSPNLP--HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred hcCCHHHHHHHHH---HHhCCCCc--eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence 5799998855544 45666544 799999999999999999999985432 34555554332100
Q ss_pred ---hh-----------hhh----hhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhc-cc-cccchhh
Q psy14616 68 ---MN-----------KTE----EETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-LG-AKMIEAI 122 (174)
Q Consensus 68 ---~~-----------~~~----~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i 122 (174)
.+ ... ..+... ...++++++|.+ +. ..+.. +....+ .+ ...+ +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-~~---~~~~~------L~~~le~~~~~~~~--I 159 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-RE---DAQQA------LRRIMEQYSRTCRF--I 159 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-CH---HHHHH------HHHHHHhccCCCeE--E
Confidence 00 000 000111 123555566655 21 11110 111111 11 2223 3
Q ss_pred hcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 123 ~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.++ +.+..+.+++.+||..+.+.+++.+++.++++....++
T Consensus 160 l~~-~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 160 IAT-RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred EEe-CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 344 34567888999999999999999999999999876543
No 104
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=1.7e-14 Score=123.75 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-C-------Ceeeecccccch--hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-T-------PFTSMAGSEIYS--LEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~-------~~~~~~~~~~~~--~~~~~ 70 (174)
+|||++.+ .++...+..+.. .+++|+||||||||++++.+|+.+... + .+..++.+.+.. .+.++
T Consensus 189 ~iGr~~ei---~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge 263 (852)
T TIGR03345 189 VLGRDDEI---RQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE 263 (852)
T ss_pred ccCCHHHH---HHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Confidence 68999876 444444444433 499999999999999999999988322 1 123333322221 12222
Q ss_pred hh-------hhhhhc--cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC----CCCCCCHHhh
Q psy14616 71 TE-------EETEMI--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS----SPHGIPIDLL 137 (174)
Q Consensus 71 ~~-------~~~~~~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~l~ 137 (174)
.+ +..... +..++++|+|.+.... ...+.... .+.+......+...+ |++|+. +...++++|.
T Consensus 264 ~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g-~~~~~~d~-~n~Lkp~l~~G~l~~--IgaTT~~e~~~~~~~d~AL~ 339 (852)
T TIGR03345 264 FENRLKSVIDEVKASPQPIILFIDEAHTLIGAG-GQAGQGDA-ANLLKPALARGELRT--IAATTWAEYKKYFEKDPALT 339 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCC-CccccccH-HHHhhHHhhCCCeEE--EEecCHHHHhhhhhccHHHH
Confidence 22 222111 2234555666663221 11111110 011122222233333 777754 3356899999
Q ss_pred cceeeEecCCCCHHHHHHHHHHHh
Q psy14616 138 DRMVIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 138 sR~~~i~~~~~~~~e~~~il~~~l 161 (174)
+||++|.+++|+.++..+||+...
T Consensus 340 rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 340 RRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HhCeEEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999999986543
No 105
>KOG0744|consensus
Probab=99.55 E-value=4.1e-15 Score=112.18 Aligned_cols=141 Identities=23% Similarity=0.345 Sum_probs=95.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-------CCCeeeecccccchhhhhhhhh--------hhhhc--cCcEEEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP-------DTPFTSMAGSEIYSLEMNKTEE--------ETEMI--EGEVVEIQI 87 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~i~~~~i 87 (174)
.+.+||+||||||||++++++|++|.. ....+.+++.++++++.++... ..++. ++..++.-|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 468999999999999999999999822 2345789999999998877651 12222 556666666
Q ss_pred ecc----CCCC----CC-ccceeEEEecc---chhhhccccccchhhhcccCCCCCCCHHhhcce-eeEecCCCCHHHHH
Q psy14616 88 ERP----ATGL----GS-KVGKLTMKTTE---METSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQ 154 (174)
Q Consensus 88 d~~----~~~~----~~-~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~ 154 (174)
|+. .... +. +.-.++....- +++....+|+++ ++|+ |-.+.++.++.+|- .+.++.+|+.+.++
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli--L~TS-Nl~~siD~AfVDRADi~~yVG~Pt~~ai~ 333 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI--LATS-NLTDSIDVAFVDRADIVFYVGPPTAEAIY 333 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE--Eecc-chHHHHHHHhhhHhhheeecCCccHHHHH
Confidence 654 0110 01 11112222222 333333455555 5565 88899999999999 77888999999999
Q ss_pred HHHHHHhchhhhhh
Q psy14616 155 AILKIRLVKNERNE 168 (174)
Q Consensus 155 ~il~~~l~~~~~~~ 168 (174)
+|++..+..-....
T Consensus 334 ~IlkscieEL~~~g 347 (423)
T KOG0744|consen 334 EILKSCIEELISSG 347 (423)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999876554443
No 106
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=6.6e-15 Score=114.05 Aligned_cols=134 Identities=20% Similarity=0.165 Sum_probs=79.7
Q ss_pred HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------------------h
Q psy14616 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--------------------------E 67 (174)
Q Consensus 14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--------------------------~ 67 (174)
+..++.+|+.+ |.+||+||+|+|||++|+.+|+.+.|..+.....|+.|.++ +
T Consensus 12 ~~~~~~~~r~~-ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~ 90 (328)
T PRK05707 12 WQQLAGRGRHP-HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ 90 (328)
T ss_pred HHHHHHCCCcc-eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence 34455667765 88999999999999999999999987532211122222111 1
Q ss_pred hhhhhhhhhhc----cCc-EEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcce
Q psy14616 68 MNKTEEETEMI----EGE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRM 140 (174)
Q Consensus 68 ~~~~~~~~~~~----~~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~ 140 (174)
+....+..... ..+ +++++.|++ +. +.++..++ +.+. .+..| |.++ +.+..++|+++|||
T Consensus 91 iR~l~~~~~~~~~~~~~kv~iI~~a~~m-~~---~aaNaLLK------~LEEPp~~~~f--iL~t-~~~~~ll~TI~SRc 157 (328)
T PRK05707 91 VRELVSFVVQTAQLGGRKVVLIEPAEAM-NR---NAANALLK------SLEEPSGDTVL--LLIS-HQPSRLLPTIKSRC 157 (328)
T ss_pred HHHHHHHHhhccccCCCeEEEECChhhC-CH---HHHHHHHH------HHhCCCCCeEE--EEEE-CChhhCcHHHHhhc
Confidence 11111111111 112 233345554 22 22222222 1222 23444 4444 57788999999999
Q ss_pred eeEecCCCCHHHHHHHHHHHh
Q psy14616 141 VIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 141 ~~i~~~~~~~~e~~~il~~~l 161 (174)
+.+.|.+++.++..++|....
T Consensus 158 ~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 158 QQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeeeCCCcCHHHHHHHHHHhc
Confidence 999999999999999998753
No 107
>KOG0735|consensus
Probab=99.55 E-value=2.6e-14 Score=117.09 Aligned_cols=156 Identities=23% Similarity=0.272 Sum_probs=109.1
Q ss_pred CchHHHHHHHHHHHHHHH--------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 2 VGQLQARRAAGVVLGMIK--------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~--------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
=|..++++.+.....+-. .+..-+.++|||||||||||.+|.++|...+ ..|+.+.+-++.++++|..++
T Consensus 670 gg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--~~fisvKGPElL~KyIGaSEq 747 (952)
T KOG0735|consen 670 GGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--LRFISVKGPELLSKYIGASEQ 747 (952)
T ss_pred ccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--eeEEEecCHHHHHHHhcccHH
Confidence 367788866665553321 1222246999999999999999999999877 668999999999999999874
Q ss_pred hh-hh-------ccCcEEEEEEeccCCCCC-Ccccee-EEE---eccchhhhccccccchhhhcccCCCCCCCHHhh--c
Q psy14616 74 ET-EM-------IEGEVVEIQIERPATGLG-SKVGKL-TMK---TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--D 138 (174)
Q Consensus 74 ~~-~~-------~~~~i~~~~id~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--s 138 (174)
.. ++ .|+..+++|+|.+..+.| |..+.. +.. ...++....+..+.+ +|+| .++.-++|+|+ .
T Consensus 748 ~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i--~aaT-sRpdliDpALLRpG 824 (952)
T KOG0735|consen 748 NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI--LAAT-SRPDLIDPALLRPG 824 (952)
T ss_pred HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE--EEec-CCccccCHhhcCCC
Confidence 32 22 478899999999865553 222211 111 122344444555554 5555 69999999999 6
Q ss_pred ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 RM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 R~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
|+ ..+.-+.|++.+..+|++....
T Consensus 825 RlD~~v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 825 RLDKLVYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred ccceeeeCCCCCcHHHHHHHHHHhh
Confidence 88 6677888899999999887443
No 108
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=7e-14 Score=120.05 Aligned_cols=156 Identities=25% Similarity=0.331 Sum_probs=96.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcC---Cc-eEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchh---------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIA---GR-AILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSL--------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~---~~-~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~--------- 66 (174)
|+||+++++.+.......+.|... |. .+||+||||||||++|+++|+.+ +....++.++.+.+...
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~ 647 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGS 647 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCC
Confidence 689999998888777776665432 23 58999999999999999999988 33345566665443211
Q ss_pred ---hhhh-----hhhhhhhc-cCcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccC--
Q psy14616 67 ---EMNK-----TEEETEMI-EGEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYS-- 127 (174)
Q Consensus 67 ---~~~~-----~~~~~~~~-~~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~-- 127 (174)
+++. +.+..... .+.++++|+|++ +.. ..++ .+.+ ......++.+.++ |+|++.
T Consensus 648 ~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-~~~---v~~~Llq~ld~g~l~d-~~Gr~vd~~n~ii--I~TSNlg~ 720 (852)
T TIGR03345 648 PPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-HPD---VLELFYQVFDKGVMED-GEGREIDFKNTVI--LLTSNAGS 720 (852)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEEechhhc-CHH---HHHHHHHHhhcceeec-CCCcEEeccccEE--EEeCCCch
Confidence 1110 11111112 346778888876 221 1110 1111 1122333444444 333311
Q ss_pred --------C----C--------------CCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 128 --------S----P--------------HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 128 --------~----~--------------~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
. + ..+.|++++|+.+|.|.+++.+++.+|+...+..
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 721 DLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred HHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 0 0 1278999999999999999999999999998755
No 109
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.53 E-value=2.4e-14 Score=102.94 Aligned_cols=136 Identities=23% Similarity=0.321 Sum_probs=78.8
Q ss_pred HHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee--cccccchhhh
Q psy14616 13 VVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM--AGSEIYSLEM 68 (174)
Q Consensus 13 ~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~--~~~~~~~~~~ 68 (174)
.+.+.+++++.+ +.+||+||+|+|||++|+.+++.+.+..+ +..+ ....+....+
T Consensus 3 ~l~~~i~~~~~~-~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLA-HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 456677788765 78999999999999999999999865311 1111 1111100111
Q ss_pred hhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeE
Q psy14616 69 NKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVII 143 (174)
Q Consensus 69 ~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i 143 (174)
..+.+..... ...++++++|++ +. +.++..+. .++.. -....+ +.++ +....+.++++|||+++
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l-~~---~~~~~Ll~--~le~~--~~~~~~--il~~-~~~~~l~~~i~sr~~~~ 150 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERM-NE---AAANALLK--TLEEP--PPNTLF--ILIT-PSPEKLLPTIRSRCQVL 150 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhh-CH---HHHHHHHH--HhcCC--CCCeEE--EEEE-CChHhChHHHHhhcEEe
Confidence 1111222211 113444566655 22 11211111 01110 012333 3344 35578999999999999
Q ss_pred ecCCCCHHHHHHHHHHH
Q psy14616 144 PTQPYQDEEIQAILKIR 160 (174)
Q Consensus 144 ~~~~~~~~e~~~il~~~ 160 (174)
.|.+++.+++.+++++.
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999999885
No 110
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.52 E-value=5.8e-15 Score=103.72 Aligned_cols=46 Identities=33% Similarity=0.572 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
||+.+. ..+...+++++.+ +.+||+||+|+||+++|+++|+.+.+.
T Consensus 1 gq~~~~---~~L~~~~~~~~l~-ha~L~~G~~g~gk~~~a~~~a~~ll~~ 46 (162)
T PF13177_consen 1 GQEEII---ELLKNLIKSGRLP-HALLFHGPSGSGKKTLALAFARALLCS 46 (162)
T ss_dssp S-HHHH---HHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-T
T ss_pred CcHHHH---HHHHHHHHcCCcc-eeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 899998 6666677889887 889999999999999999999998654
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.52 E-value=5.2e-14 Score=120.86 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=92.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhh--------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLE-------- 67 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~-------- 67 (174)
|+||+++++.+.......+.|.. |...++|+||+|||||++|+++|+.+. ....++.++.+.+....
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~ 590 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS 590 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC
Confidence 68999999888776655555432 224689999999999999999999883 33456666654432110
Q ss_pred ----h-----hhhhhhhhhcc-CcEEEEEEeccCCCCC------CccceeEEEeccchhhhccccccchhhhcccC----
Q psy14616 68 ----M-----NKTEEETEMIE-GEVVEIQIERPATGLG------SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS---- 127 (174)
Q Consensus 68 ----~-----~~~~~~~~~~~-~~i~~~~id~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 127 (174)
+ +...+.....| ..++++++|++..... -+.+.+ .+. .....+..+++| |+|++.
T Consensus 591 ~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~--~d~-~g~~v~~~~~i~--I~Tsn~g~~~ 665 (821)
T CHL00095 591 PPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRL--TDS-KGRTIDFKNTLI--IMTSNLGSKV 665 (821)
T ss_pred CCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCce--ecC-CCcEEecCceEE--EEeCCcchHH
Confidence 0 01111112223 3566778888721110 000000 000 011122222222 222210
Q ss_pred ------------------C-C-------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 128 ------------------S-P-------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 128 ------------------~-~-------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
. . ..+.|.+++|+ .++.|.+++.+++.+|+...+.+
T Consensus 666 i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 666 IETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 0 0 11578999999 99999999999999999998764
No 112
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=3.4e-14 Score=109.57 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh----------------------
Q psy14616 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE---------------------- 67 (174)
Q Consensus 10 ~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~---------------------- 67 (174)
.-+.+...+.+|+.+ |.+||+||+|+||+++|+.+|+.+.|..+.....|+.|.++.
T Consensus 10 ~~~~l~~~~~~~rl~-HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~ 88 (325)
T PRK06871 10 TYQQITQAFQQGLGH-HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHHHcCCcc-eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC
Confidence 346677788889887 899999999999999999999999775322112233221110
Q ss_pred hhhhhh---hhhhcc--C--c-EEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhh
Q psy14616 68 MNKTEE---ETEMIE--G--E-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 68 ~~~~~~---~~~~~~--~--~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
+.++.+ .....+ | + +++++.|++ +. +.+|..++ +.+.+ ++.| |.++ +.+..+.|+++
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-~~---~AaNaLLK------tLEEPp~~~~f--iL~t-~~~~~llpTI~ 155 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERL-TE---AAANALLK------TLEEPRPNTYF--LLQA-DLSAALLPTIY 155 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhh-CH---HHHHHHHH------HhcCCCCCeEE--EEEE-CChHhCchHHH
Confidence 000000 000011 1 2 333455555 22 22222222 11222 2334 3344 57889999999
Q ss_pred cceeeEecCCCCHHHHHHHHHHHh
Q psy14616 138 DRMVIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 138 sR~~~i~~~~~~~~e~~~il~~~l 161 (174)
|||+.+.|.+++.+++.++|+...
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHh
Confidence 999999999999999999998753
No 113
>KOG0726|consensus
Probab=99.50 E-value=4.9e-15 Score=110.64 Aligned_cols=146 Identities=19% Similarity=0.244 Sum_probs=99.0
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-hhccCcEEEEEEeccCC
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-EMIEGEVVEIQIERPAT 92 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~i~~~~id~~~~ 92 (174)
|..||++++|||+||||||.||+++|+... ..|..+.+++++..+.+.-. ..+ +..|..++++|||.+..
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANqTS--ATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt 292 (440)
T KOG0726|consen 215 GIKPPKGVILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292 (440)
T ss_pred CCCCCCeeEEeCCCCCchhHHHHHHhcccc--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc
Confidence 666789999999999999999999998765 44777777888776665543 222 44578899999998733
Q ss_pred CC-C------CccceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHHh
Q psy14616 93 GL-G------SKVGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 93 ~~-~------~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~l 161 (174)
+. . .+.|...+. .+.++.+.....+-+ |.++ |+...++|+|+ .|+ ..|.|+.+++...++|++.+.
T Consensus 293 KRyds~SggerEiQrtmLELLNQldGFdsrgDvKv--imAT-nrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHT 369 (440)
T KOG0726|consen 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKV--IMAT-NRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHT 369 (440)
T ss_pred ccccCCCccHHHHHHHHHHHHHhccCccccCCeEE--EEec-ccccccCHhhcCCCccccccccCCCchhhhceeEEEee
Confidence 22 1 111211111 111222233333333 4455 89999999999 678 789999999999998888776
Q ss_pred chhhhhhhhh
Q psy14616 162 VKNERNEIYN 171 (174)
Q Consensus 162 ~~~~~~~~~~ 171 (174)
.+..+.+.+|
T Consensus 370 s~Mtl~~dVn 379 (440)
T KOG0726|consen 370 SRMTLAEDVN 379 (440)
T ss_pred cccchhcccc
Confidence 6655555443
No 114
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=4e-13 Score=105.78 Aligned_cols=57 Identities=30% Similarity=0.535 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHHHHHH--HHhc-------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616 1 MVGQLQARRAAGVVLGM--IKEG-------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA 59 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~--~~~g-------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~ 59 (174)
||||+++++++...... .+.+ ..+++++||+||||||||++|+++|+.++. +|+.++
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~--~fi~vd 79 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVE 79 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEee
Confidence 69999999888754432 1211 123589999999999999999999999973 344444
No 115
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.49 E-value=1.2e-14 Score=98.29 Aligned_cols=114 Identities=30% Similarity=0.367 Sum_probs=68.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhhh-hc-cCcEEEEEEeccCCCCC--C
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EETE-MI-EGEVVEIQIERPATGLG--S 96 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~-~~~i~~~~id~~~~~~~--~ 96 (174)
+||+||||||||++|+.+|+.++ .++..++...+.+...+... ..+. .. +..++++++|.+..... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--cccccccccccccccccccccccccccccccccccceeeeeccchhccccccccc
Confidence 68999999999999999999998 66788888776643333332 2222 22 56777788888743320 0
Q ss_pred ccceeEEE---eccchhhhcc-ccccchhhhcccCCCCCCCHHhh-cce-eeEecC
Q psy14616 97 KVGKLTMK---TTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLL-DRM-VIIPTQ 146 (174)
Q Consensus 97 ~~~~~~~~---~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~-sR~-~~i~~~ 146 (174)
........ ...+...... .+..+ ++++ |....++++++ +|| ..++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~v--I~tt-n~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIV--IATT-NSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEE--EEEE-SSGGGSCHHHHSTTSEEEEEE-
T ss_pred ccccccccceeeeccccccccccccee--EEee-CChhhCCHhHHhCCCcEEEEcC
Confidence 00000000 1111111121 22344 5566 77899999999 999 566654
No 116
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=4.4e-13 Score=105.61 Aligned_cols=57 Identities=32% Similarity=0.499 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHHHHH-HHhcC--------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616 1 MVGQLQARRAAGVVLGM-IKEGK--------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA 59 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-~~~g~--------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~ 59 (174)
|+||+++++++...... ++... ..++++||+||||||||++|+.+|+.++.. |+.++
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~--fi~vD 82 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVE 82 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh--heeec
Confidence 69999999888765532 11111 125899999999999999999999998743 44443
No 117
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.49 E-value=1.2e-13 Score=109.87 Aligned_cols=89 Identities=26% Similarity=0.409 Sum_probs=58.4
Q ss_pred CCchHHHHHHHHHHH----HHHHhc-------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hh
Q psy14616 1 MVGQLQARRAAGVVL----GMIKEG-------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EM 68 (174)
Q Consensus 1 iiG~~~~~~~l~~~~----~~~~~g-------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~ 68 (174)
||||+++++.+.... ..+..+ ..+..++||+||||||||++|+++|+.++ .+|+.++++.+... ++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~--~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD--VPFAIADATTLTEAGYV 150 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC--CCceecchhhcccCCcc
Confidence 699999999886544 222221 11346899999999999999999999997 45666665543321 11
Q ss_pred hh----hh----h-----hhhhccCcEEEEEEeccC
Q psy14616 69 NK----TE----E-----ETEMIEGEVVEIQIERPA 91 (174)
Q Consensus 69 ~~----~~----~-----~~~~~~~~i~~~~id~~~ 91 (174)
+. .. . .....++.++++|||++.
T Consensus 151 G~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 151 GEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred cchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 11 10 0 112245778889999984
No 118
>KOG0743|consensus
Probab=99.49 E-value=2.7e-13 Score=106.42 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=83.9
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc-----cCcEEEEEEeccCCCCC
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI-----EGEVVEIQIERPATGLG 95 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~ 95 (174)
|+.=.+++|||||||||||+++-|+|..|+.+.....++....-+ +...+. ...+++.+||..+...+
T Consensus 231 GkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~-------dLr~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 231 GKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS-------DLRHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred CcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH-------HHHHHHHhCCCCcEEEEeeccccccccc
Confidence 555578999999999999999999999998654333333221110 111111 23567778997744321
Q ss_pred C-------cc---ceeEEE--eccchhhhccc--cccchhhhcccCCCCCCCHHhhc--ce-eeEecCCCCHHHHHHHHH
Q psy14616 96 S-------KV---GKLTMK--TTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILK 158 (174)
Q Consensus 96 ~-------~~---~~~~~~--~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~ 158 (174)
. .. ..+.|. .++++..-.-. ..++ +.|| |....+||||++ |+ ..|++..=+.+....++.
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi--vFTT-Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII--VFTT-NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhccccccCCCceEE--EEec-CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHH
Confidence 0 11 112222 11222222211 2233 4455 899999999997 99 889999999999999999
Q ss_pred HHhchh
Q psy14616 159 IRLVKN 164 (174)
Q Consensus 159 ~~l~~~ 164 (174)
+++.-.
T Consensus 381 nYL~~~ 386 (457)
T KOG0743|consen 381 NYLGIE 386 (457)
T ss_pred HhcCCC
Confidence 988553
No 119
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.49 E-value=1.4e-13 Score=109.17 Aligned_cols=89 Identities=25% Similarity=0.375 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHHHH----HHHHh---cC------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-
Q psy14616 1 MVGQLQARRAAGVVL----GMIKE---GK------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~----~~~~~---g~------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~- 66 (174)
||||+++++.+.... ..+.. .. ....++||+||||||||++|+++|+.++ .+|...++..+...
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~--~pf~~~da~~L~~~g 156 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN--VPFAIADATTLTEAG 156 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC--CCeEEechhhccccc
Confidence 699999998886544 12221 11 1136899999999999999999999997 45665555443211
Q ss_pred hhhhhh-----h--------hhhhccCcEEEEEEeccC
Q psy14616 67 EMNKTE-----E--------ETEMIEGEVVEIQIERPA 91 (174)
Q Consensus 67 ~~~~~~-----~--------~~~~~~~~i~~~~id~~~ 91 (174)
+++... . .....++.++++|+|++.
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~ 194 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIS 194 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhc
Confidence 222210 0 011134578888999874
No 120
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.49 E-value=3e-13 Score=104.56 Aligned_cols=146 Identities=21% Similarity=0.279 Sum_probs=86.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh--hhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM--NKTEEET 75 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~--~~~~~~~ 75 (174)
++|+++++ ..+..+++.+..+ +++|+||||+|||++++++++.+.+. ..+..++.++....+. ......+
T Consensus 19 ~~g~~~~~---~~l~~~i~~~~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 19 IVGQEEIV---ERLKSYVKEKNMP--HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred hcCcHHHH---HHHHHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHH
Confidence 57999888 4555555666655 78999999999999999999988432 2334444332211111 0111111
Q ss_pred hhc------cCcEEEEEEeccCCCCCCccceeEEEeccchhhhc-c-ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616 76 EMI------EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-L-GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP 147 (174)
Q Consensus 76 ~~~------~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~ 147 (174)
... ...++++++|.+ .. ..+.. +....+ . ....+ +.++ +....+.+++.+||.+++|++
T Consensus 94 ~~~~~~~~~~~vviiDe~~~l-~~---~~~~~------L~~~le~~~~~~~l--Il~~-~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 94 RTAPVGGAPFKIIFLDEADNL-TS---DAQQA------LRRTMEMYSQNTRF--ILSC-NYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred hcCCCCCCCceEEEEeCcccC-CH---HHHHH------HHHHHhcCCCCCeE--EEEe-CCccccchhHHHHhheeeeCC
Confidence 111 113444566555 21 11110 011111 1 12223 3344 566778889999999999999
Q ss_pred CCHHHHHHHHHHHhchh
Q psy14616 148 YQDEEIQAILKIRLVKN 164 (174)
Q Consensus 148 ~~~~e~~~il~~~l~~~ 164 (174)
++.+++..+++..+.+.
T Consensus 161 l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 161 LKKEAVAERLRYIAENE 177 (319)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 99999999999877544
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.48 E-value=4.2e-13 Score=111.83 Aligned_cols=157 Identities=22% Similarity=0.261 Sum_probs=92.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC--------CCCCeeeecccccchh------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG--------PDTPFTSMAGSEIYSL------ 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~--------~~~~~~~~~~~~~~~~------ 66 (174)
++||+.+.+.+ ...+..+. +.+++|+|||||||||+|+.+++... ...+|+.+++..+...
T Consensus 156 iiGqs~~~~~l---~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 156 IVGQERAIKAL---LAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred ceeCcHHHHHH---HHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 57999888654 44444433 35899999999999999999987652 2345777776543100
Q ss_pred -hhhhhhhh----------------------hhhccCcEEEEEEeccCCCC-C------CccceeEEEecc---------
Q psy14616 67 -EMNKTEEE----------------------TEMIEGEVVEIQIERPATGL-G------SKVGKLTMKTTE--------- 107 (174)
Q Consensus 67 -~~~~~~~~----------------------~~~~~~~i~~~~id~~~~~~-~------~~~~~~~~~~~~--------- 107 (174)
.++...+. .....|.++++|++.+ +.. . -+.+...+...+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 00100000 0111344566677665 221 0 011112221111
Q ss_pred --chhhhc-cccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 108 --METSYD-LGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 108 --~~~~~~-~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+...++ ..+..+.+++++++.+..++++|+|||..+.|++++.+++.+++++.+.+
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 000111 12223434666767778899999999999999999999999999997653
No 122
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=7.4e-14 Score=108.48 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh---------------------
Q psy14616 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM--------------------- 68 (174)
Q Consensus 10 ~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--------------------- 68 (174)
..+.+...+.+|+.+ |.+||+||+|+||+++|+++|+.+.|..+.....|+.|.++..
T Consensus 10 ~~~~l~~~~~~~rl~-HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 10 DYEQLVGSYQAGRGH-HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHcCCcc-eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence 346677788889887 8999999999999999999999997753221123333322111
Q ss_pred --hhhhhhh---hhc----cCc-EEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHh
Q psy14616 69 --NKTEEET---EMI----EGE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 69 --~~~~~~~---~~~----~~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l 136 (174)
.++.+.. ... ..+ +++...|+| +. +.+|..++ +.+. .+++| |-.+ +.+..+.|++
T Consensus 89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-~~---~AaNaLLK------tLEEPp~~t~f--iL~t-~~~~~lLpTI 155 (334)
T PRK07993 89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALL-TD---AAANALLK------TLEEPPENTWF--FLAC-REPARLLATL 155 (334)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEcchHhh-CH---HHHHHHHH------HhcCCCCCeEE--EEEE-CChhhChHHH
Confidence 0000000 000 112 222334444 22 12222222 1222 23444 3344 5788999999
Q ss_pred hcceeeEecCCCCHHHHHHHHHHH
Q psy14616 137 LDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 137 ~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
+|||+.+.|++++.++..++|...
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHc
Confidence 999999999999999999998764
No 123
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.1e-13 Score=101.16 Aligned_cols=57 Identities=32% Similarity=0.540 Sum_probs=45.0
Q ss_pred CCchHHHHHHHH-HHHHHHHhcCcC--------CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616 1 MVGQLQARRAAG-VVLGMIKEGKIA--------GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA 59 (174)
Q Consensus 1 iiG~~~~~~~l~-~~~~~~~~g~~~--------~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~ 59 (174)
||||+++++++. .+.+.++..+.+ |+|+|+.||+|+|||.+||-+|+..+ .||+.+.
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~--aPFiKVE 82 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAG--APFIKVE 82 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhC--CCeEEEE
Confidence 699999999876 455555543333 78999999999999999999999988 4565444
No 124
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=6.8e-13 Score=100.15 Aligned_cols=147 Identities=21% Similarity=0.212 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc------cchhhhhh----hhh---
Q psy14616 7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE------IYSLEMNK----TEE--- 73 (174)
Q Consensus 7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~------~~~~~~~~----~~~--- 73 (174)
+++.++.+...+.. +.+++|.||||||||++|+++|+.+|.. +..+++.. +++.+.+. ..+
T Consensus 7 ~~~l~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~~lg~~--~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 7 VKRVTSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVARKRDRP--VMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHHHhCCC--EEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 34444555555554 3589999999999999999999998854 44444322 11111000 000
Q ss_pred --------------------hhhhccCcEEEEEEeccCCCCC------CccceeEEEeccc-hhhhccccccchhhhccc
Q psy14616 74 --------------------ETEMIEGEVVEIQIERPATGLG------SKVGKLTMKTTEM-ETSYDLGAKMIEAIGTAY 126 (174)
Q Consensus 74 --------------------~~~~~~~~i~~~~id~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 126 (174)
.+-...+.++++|+|++..... -+.+.+....... ....... .-|..|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~-~~frvIaTs- 158 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVH-PEFRVIFTS- 158 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecC-CCCEEEEee-
Confidence 0001123566678877621110 0111111111000 0111111 123336676
Q ss_pred CCC-----CCCCHHhhcceeeEecCCCCHHHHHHHHHHHh
Q psy14616 127 SSP-----HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 127 ~~~-----~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l 161 (174)
|+. ..+++++.+||..+.++.|+.++..+|++.+.
T Consensus 159 N~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 159 NPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred CCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh
Confidence 554 35689999999999999999999999998763
No 125
>PRK06893 DNA replication initiation factor; Validated
Probab=99.46 E-value=1.8e-13 Score=101.37 Aligned_cols=128 Identities=14% Similarity=0.181 Sum_probs=70.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecccccchhhhhhhhhhhhhc-cCcEEEEEEeccCCCCCCcccee
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAGSEIYSLEMNKTEEETEMI-EGEVVEIQIERPATGLGSKVGKL 101 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~id~~~~~~~~~~~~~ 101 (174)
..++|+||||||||++++++|+++ +..+.|...+....... .. ..... ...+++++++...... ..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~---~~--~~~~~~~dlLilDDi~~~~~~~--~~~~~ 112 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSP---AV--LENLEQQDLVCLDDLQAVIGNE--EWELA 112 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhH---HH--HhhcccCCEEEEeChhhhcCCh--HHHHH
Confidence 367999999999999999999886 33333443332111110 00 01111 1235555665542111 10111
Q ss_pred EEEeccchhhhccccccchhhhcccCCCCCC---CHHhhccee---eEecCCCCHHHHHHHHHHHhchh
Q psy14616 102 TMKTTEMETSYDLGAKMIEAIGTAYSSPHGI---PIDLLDRMV---IIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l---~~~l~sR~~---~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.+. .+....+....++ +.|++..+..+ .+.+.||+. ++++.+|+++++.+++++....+
T Consensus 113 l~~--l~n~~~~~~~~il--lits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 113 IFD--LFNRIKEQGKTLL--LISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred HHH--HHHHHHHcCCcEE--EEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 000 0111112122222 34554455443 489999995 89999999999999999876543
No 126
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.45 E-value=1.8e-13 Score=101.65 Aligned_cols=126 Identities=20% Similarity=0.196 Sum_probs=71.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CCCCeeeecccccchhhhhhhhhhhhhc--cCcEEEEEEeccCCCCCCcc-c
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG---PDTPFTSMAGSEIYSLEMNKTEEETEMI--EGEVVEIQIERPATGLGSKV-G 99 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~id~~~~~~~~~~-~ 99 (174)
.+++|+||||||||++++++++.+. ..+.|..++...... . +..+.+ ...+++++++.+ ++. +. +
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~---~---~~~~~~~~~dlliiDdi~~~-~~~--~~~~ 116 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFV---P---EVLEGMEQLSLVCIDNIECI-AGD--ELWE 116 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhh---H---HHHHHhhhCCEEEEeChhhh-cCC--HHHH
Confidence 5899999999999999999998763 222333332211100 0 001111 123455566554 221 11 0
Q ss_pred eeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhcce---eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 100 KLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
...|. ......+..+..+ +.|+.+++.. +.|.|+||| .++.+.+++.+++.+++++....+
T Consensus 117 ~~lf~--l~n~~~e~g~~~l--i~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 117 MAIFD--LYNRILESGRTRL--LITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred HHHHH--HHHHHHHcCCCeE--EEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 00000 0111112122222 4566567655 679999999 899999999999999998855443
No 127
>KOG0729|consensus
Probab=99.45 E-value=4.8e-14 Score=104.35 Aligned_cols=136 Identities=19% Similarity=0.231 Sum_probs=82.7
Q ss_pred HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-hhhhh-------ccCcEEEEEEe
Q psy14616 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-EETEM-------IEGEVVEIQIE 88 (174)
Q Consensus 17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~i~~~~id 88 (174)
+++-|.-|++++|+|||||||||.+|+++|+..+ .-|+.+-++.+...++++-. -..++ ..+.++++|||
T Consensus 203 fv~lgidppkgvllygppgtgktl~aravanrtd--acfirvigselvqkyvgegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 203 FVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 3445777789999999999999999999999887 44788888888777776543 11122 24567888998
Q ss_pred ccC-CCCCC------ccceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHH
Q psy14616 89 RPA-TGLGS------KVGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAIL 157 (174)
Q Consensus 89 ~~~-~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il 157 (174)
.+. ..+.+ +.|...+. .+.++.+.-.+|.-+ +.++ |++..++|+|+ .|+ ..++|.-++.+-..+|+
T Consensus 281 aiggarfddg~ggdnevqrtmleli~qldgfdprgnikv--lmat-nrpdtldpallrpgrldrkvef~lpdlegrt~i~ 357 (435)
T KOG0729|consen 281 AIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV--LMAT-NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIF 357 (435)
T ss_pred cccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE--Eeec-CCCCCcCHhhcCCcccccceeccCCcccccceeE
Confidence 772 22222 11211111 011122222233333 3444 89999999998 566 45555555444333333
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=5.1e-13 Score=114.99 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=96.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcC----CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhh-------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIA----GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEM------- 68 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~----~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~------- 68 (174)
|+||+.+++.+.......+.|... ...++|+||||||||++|+++|+.+. ...+++.++++.+.....
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~ 649 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGA 649 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCC
Confidence 589999998888777766655432 24789999999999999999999873 334566666654432110
Q ss_pred -----h-----hhhhhhhhcc-CcEEEEEEeccCCCCCCccceeEEE---e----ccchhhhccccccchhhhcccCC--
Q psy14616 69 -----N-----KTEEETEMIE-GEVVEIQIERPATGLGSKVGKLTMK---T----TEMETSYDLGAKMIEAIGTAYSS-- 128 (174)
Q Consensus 69 -----~-----~~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~i~~~~~~-- 128 (174)
+ .........| +.+++++++++ +. ..++..+. + .......+..+.++ |+|++-.
T Consensus 650 ~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-~~---~v~~~Ll~ile~g~l~d~~gr~vd~rn~ii--I~TSN~g~~ 723 (857)
T PRK10865 650 PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-HP---DVFNILLQVLDDGRLTDGQGRTVDFRNTVV--IMTSNLGSD 723 (857)
T ss_pred CCcccccchhHHHHHHHHhCCCCeEEEeehhhC-CH---HHHHHHHHHHhhCceecCCceEEeecccEE--EEeCCcchH
Confidence 0 0011112223 45677788876 22 11111000 0 00112233444444 4444210
Q ss_pred ----------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 129 ----------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 129 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
...+.|+|++|+ .++.|.|++.+++.+|++..+.+
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 724 LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 123678999999 99999999999999999998755
No 129
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.44 E-value=8.6e-13 Score=113.79 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=98.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhh-------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEM------- 68 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~------- 68 (174)
|+||+.+++.+.........|.. |...++|+||||||||++|+++|+.+.. ..+++.++++.+.....
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~ 646 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGA 646 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCC
Confidence 68999999888877766665432 3357999999999999999999998843 34566666654422110
Q ss_pred ----------hhhhhhhhhccC-cEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCC
Q psy14616 69 ----------NKTEEETEMIEG-EVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSP 129 (174)
Q Consensus 69 ----------~~~~~~~~~~~~-~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 129 (174)
+.........|. .++++++|++ +. ..++. .+.+ ......++.++++ |+|++-..
T Consensus 647 ~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-~~---~v~~~Ll~~l~~g~l~d-~~g~~vd~rn~ii--I~TSn~g~ 719 (852)
T TIGR03346 647 PPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-HP---DVFNVLLQVLDDGRLTD-GQGRTVDFRNTVI--IMTSNLGS 719 (852)
T ss_pred CCCccCcccccHHHHHHHcCCCcEEEEeccccC-CH---HHHHHHHHHHhcCceec-CCCeEEecCCcEE--EEeCCcch
Confidence 011111122233 4677788877 32 12221 1111 1123344555555 55553211
Q ss_pred ------------------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 130 ------------------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 130 ------------------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
..+.|.|+.|+ .++.|.|++.+++.+|+...+..
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 720 QFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred HhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 12568899999 89999999999999999987753
No 130
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.44 E-value=2.6e-13 Score=105.05 Aligned_cols=143 Identities=23% Similarity=0.270 Sum_probs=81.5
Q ss_pred CCchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC----------------------Ceee
Q psy14616 1 MVGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT----------------------PFTS 57 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~----------------------~~~~ 57 (174)
++|++.+. ..+..++. .++.+ +.+||+||||+|||++|.++|+.+.+.. .+..
T Consensus 3 ~~~~~~~~---~~l~~~~~~~~~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 3 LVPWQEAV---KRLLVQALESGRLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred cccchhHH---HHHHHHHHhcCCCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 46777777 34444444 45444 5599999999999999999999997543 3445
Q ss_pred ecccccchhh--hhhhhhhh---hhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC
Q psy14616 58 MAGSEIYSLE--MNKTEEET---EMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS 127 (174)
Q Consensus 58 ~~~~~~~~~~--~~~~~~~~---~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 127 (174)
+++++....+ ...+.+.. ...+ + .+++++.|.+.. ..++...+... ..-.++.| +.++ |
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----~A~nallk~lE----ep~~~~~~--il~~-n 147 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----DAANALLKTLE----EPPKNTRF--ILIT-N 147 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH----HHHHHHHHHhc----cCCCCeEE--EEEc-C
Confidence 5555443321 11122111 1122 1 344557776622 12222111110 01123334 4455 6
Q ss_pred CCCCCCHHhhcceeeEecCCCCHHHHHHHHH
Q psy14616 128 SPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 158 (174)
Q Consensus 128 ~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 158 (174)
.+..+.++++|||++++|.+++..+....++
T Consensus 148 ~~~~il~tI~SRc~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 148 DPSKILPTIRSRCQRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ChhhccchhhhcceeeecCCchHHHHHHHhh
Confidence 8899999999999999999865444443333
No 131
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.9e-13 Score=105.25 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh-----------------------
Q psy14616 11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE----------------------- 67 (174)
Q Consensus 11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~----------------------- 67 (174)
...+...+++|+.+ |.+||+||+|+||+++|+++|+.+.|..+.. ++.+.++.
T Consensus 13 ~~~l~~~~~~~rl~-HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~---~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 13 YDQTVAALDAGRLG-HGLLICGPEGLGKRAVALALAEHVLASGPDP---AAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHcCCcc-eeEeeECCCCCCHHHHHHHHHHHHhCCCCCC---CCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 36677778889887 8899999999999999999999997653211 11110000
Q ss_pred ------hhhhhhhh---hhcc----Cc-EEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCC
Q psy14616 68 ------MNKTEEET---EMIE----GE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHG 131 (174)
Q Consensus 68 ------~~~~~~~~---~~~~----~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~ 131 (174)
+.++.+.. ...+ .+ +++++.|++ +. +.+|.. ..+.+.+ ++.| |..+ +.+..
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-~~---~AaNaL------LKtLEEPp~~~~f--iL~~-~~~~~ 155 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-NR---AACNAL------LKTLEEPSPGRYL--WLIS-AQPAR 155 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-CH---HHHHHH------HHHhhCCCCCCeE--EEEE-CChhh
Confidence 00000000 0000 12 222344444 21 112222 2222222 3344 4444 57888
Q ss_pred CCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616 132 IPIDLLDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
+.|+++|||+.+.|.+++.++..++|...
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHc
Confidence 99999999999999999999999999864
No 132
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.43 E-value=6.3e-13 Score=114.46 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=86.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccc--hhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIY--SLEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~--~~~~~~ 70 (174)
+||+++.+ .++...+.... ..+++|+||||||||++++++|+.+.. ...++.++.+.+. ..+.+.
T Consensus 180 vigr~~ei---~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~ 254 (857)
T PRK10865 180 VIGRDEEI---RRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE 254 (857)
T ss_pred CCCCHHHH---HHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhh
Confidence 68988765 44443333333 359999999999999999999998832 1233444433332 112222
Q ss_pred hh-------hhhhh--ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhh
Q psy14616 71 TE-------EETEM--IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLL 137 (174)
Q Consensus 71 ~~-------~~~~~--~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~ 137 (174)
.+ +.... .+..++++|+|.+... +...+.... ...+......+. +.+|++|+..+ ..+++++.
T Consensus 255 ~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~-~~~~~~~d~-~~~lkp~l~~g~--l~~IgaTt~~e~r~~~~~d~al~ 330 (857)
T PRK10865 255 FEERLKGVLNDLAKQEGNVILFIDELHTMVGA-GKADGAMDA-GNMLKPALARGE--LHCVGATTLDEYRQYIEKDAALE 330 (857)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEecHHHhccC-CCCccchhH-HHHhcchhhcCC--CeEEEcCCCHHHHHHhhhcHHHH
Confidence 22 11111 1224566677776322 111111100 000111112222 22367765554 35899999
Q ss_pred cceeeEecCCCCHHHHHHHHHHHh
Q psy14616 138 DRMVIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 138 sR~~~i~~~~~~~~e~~~il~~~l 161 (174)
+||+.|.+..|+.++...+++...
T Consensus 331 rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 331 RRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhCCEEEeCCCCHHHHHHHHHHHh
Confidence 999889999999999999997643
No 133
>KOG0732|consensus
Probab=99.42 E-value=4.8e-13 Score=114.31 Aligned_cols=160 Identities=21% Similarity=0.182 Sum_probs=108.7
Q ss_pred chHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecccccchhhhhhh
Q psy14616 3 GQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAGSEIYSLEMNKT 71 (174)
Q Consensus 3 G~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~ 71 (174)
|.++++..+....... .-+..|++++||+||||||||..|+++|..+ +.+..|..-.+.++.++++++.
T Consensus 269 gl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEa 348 (1080)
T KOG0732|consen 269 GLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEA 348 (1080)
T ss_pred cHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcH
Confidence 5677776555433211 1244567999999999999999999999887 3345566667788999999988
Q ss_pred hhhh--------hhccCcEEEEEEeccCCCCCC--ccceeEEEe---ccchhhhccccccchhhhcccCCCCCCCHHhh-
Q psy14616 72 EEET--------EMIEGEVVEIQIERPATGLGS--KVGKLTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL- 137 (174)
Q Consensus 72 ~~~~--------~~~~~~i~~~~id~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~- 137 (174)
+... ...|..+++++||.+...... ++-...... .-+......+.+++ |+++ |++..++|+++
T Consensus 349 ERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvv--igAT-nRpda~dpaLRR 425 (1080)
T KOG0732|consen 349 ERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVV--IGAT-NRPDAIDPALRR 425 (1080)
T ss_pred HHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEE--Eccc-CCccccchhhcC
Confidence 7332 223667888899976222111 111112222 22344444455555 6666 99999999996
Q ss_pred -cce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 138 -DRM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 138 -sR~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
.|| ..++|+-++.+...+|+..+-.+..
T Consensus 426 Pgrfdref~f~lp~~~ar~~Il~Ihtrkw~ 455 (1080)
T KOG0732|consen 426 PGRFDREFYFPLPDVDARAKILDIHTRKWE 455 (1080)
T ss_pred CcccceeEeeeCCchHHHHHHHHHhccCCC
Confidence 778 8899999999999999988765543
No 134
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=5.3e-13 Score=103.68 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=33.2
Q ss_pred hhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616 122 IGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 122 i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
|.++ +++..++|+++|||+.+.|++++.+++.++|...
T Consensus 166 iL~t-~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVS-ARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEE-CChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 4444 5789999999999999999999999999999874
No 135
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=4.7e-13 Score=103.05 Aligned_cols=135 Identities=14% Similarity=0.063 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh---hhhhhcc--------
Q psy14616 11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE---EETEMIE-------- 79 (174)
Q Consensus 11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------- 79 (174)
-+.+...+++++.+ |.+||+||.|+||+++|+.+|+.+.|..+- ...++.|.++..-... |...+.|
T Consensus 12 ~~~l~~~~~~~rl~-hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (319)
T PRK06090 12 WQNWKAGLDAGRIP-GALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHcCCcc-eeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC
Confidence 35677777888887 899999999999999999999999765321 1223333221110000 0000000
Q ss_pred -------------------Cc-EEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhh
Q psy14616 80 -------------------GE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 80 -------------------~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
.+ +++...|++ +. ..+|..++ +.+.+ ++.| |-.+ +.+..+.|+++
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-~~---~AaNaLLK------tLEEPp~~t~f--iL~t-~~~~~lLpTI~ 156 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAM-NE---SASNALLK------TLEEPAPNCLF--LLVT-HNQKRLLPTIV 156 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhh-CH---HHHHHHHH------HhcCCCCCeEE--EEEE-CChhhChHHHH
Confidence 11 222233333 21 11222111 22222 2334 3344 57889999999
Q ss_pred cceeeEecCCCCHHHHHHHHHHH
Q psy14616 138 DRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 138 sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
|||+.+.|++++.+++.++|...
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHc
Confidence 99999999999999999998764
No 136
>KOG0651|consensus
Probab=99.38 E-value=9.4e-14 Score=104.37 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=83.2
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh--------hhhhhccCcEEEEEEeccCC
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE--------EETEMIEGEVVEIQIERPAT 92 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~id~~~~ 92 (174)
|..+|..++||||||+|||.+|+++|..+|.+ |+.+.++.+.+.+.++.. ...+..++.++.++||....
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--fl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigG 239 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVN--FLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGG 239 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCc--eEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhcc
Confidence 55567899999999999999999999999954 888888888888877765 12244577888889987632
Q ss_pred CC---CCc----cceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHH
Q psy14616 93 GL---GSK----VGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEE 152 (174)
Q Consensus 93 ~~---~~~----~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e 152 (174)
.. ++. .+...+. ...+.....+..+-+ |+|+ |+++.++|+|+ .|+ ..|+.+-+++..
T Consensus 240 Rr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~--Imat-NrpdtLdpaLlRpGRldrk~~iPlpne~~ 307 (388)
T KOG0651|consen 240 RRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKT--IMAT-NRPDTLDPALLRPGRLDRKVEIPLPNEQA 307 (388)
T ss_pred EEeccccchhHHHHHHHHHHHHhhccchhcccccE--EEec-CCccccchhhcCCccccceeccCCcchhh
Confidence 22 000 0100000 112334444445545 6676 99999999998 455 344444444433
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.38 E-value=1.4e-12 Score=112.09 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=88.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~ 70 (174)
++|.+..++.+..++ .. ....+++|+||||||||++|+.+|+.+.. ...++.++.+.+.. .+.++
T Consensus 181 ~igr~~ei~~~~~~L---~r--~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 181 VIGREKEIERVIQIL---GR--RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCcHHHHHHHHHHH---cc--cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 578777775544443 22 23469999999999999999999998731 13455666554431 22333
Q ss_pred hh-------hhhhhc-cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhc
Q psy14616 71 TE-------EETEMI-EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLD 138 (174)
Q Consensus 71 ~~-------~~~~~~-~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~s 138 (174)
.+ +...-. +..++++|+|.++.... ..+.... ...+......+. +.+|++|+... ...++++.+
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~-~~g~~~~-a~lLkp~l~rg~--l~~IgaTt~~ey~~~ie~D~aL~r 331 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGA-AEGAIDA-ANILKPALARGE--LQCIGATTLDEYRKHIEKDPALER 331 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCC-CCCcccH-HHHhHHHHhCCC--cEEEEeCCHHHHHHHHhcCHHHHh
Confidence 32 111111 22355667776643221 1111110 011111111222 22366665443 347899999
Q ss_pred ceeeEecCCCCHHHHHHHHHHHh
Q psy14616 139 RMVIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 139 R~~~i~~~~~~~~e~~~il~~~l 161 (174)
||+.+.+..++.++...|++...
T Consensus 332 Rf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 332 RFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cceEEecCCCCHHHHHHHHHHHH
Confidence 99999999999999998888743
No 138
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.37 E-value=1.1e-12 Score=111.07 Aligned_cols=154 Identities=20% Similarity=0.170 Sum_probs=84.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-CCCCC-------eeeecccccc--hhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-GPDTP-------FTSMAGSEIY--SLEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l-~~~~~-------~~~~~~~~~~--~~~~~~ 70 (174)
++|.+...+.+... +... ...+++|+||||||||++|+++|+.+ ...++ +..++.+.+. ..+.+.
T Consensus 188 liGR~~ei~~~i~i---L~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge 262 (758)
T PRK11034 188 LIGREKELERAIQV---LCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_pred CcCCCHHHHHHHHH---Hhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhh
Confidence 46666555333332 2222 23689999999999999999999875 21122 2222222221 111222
Q ss_pred hh-------hhh-hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhc
Q psy14616 71 TE-------EET-EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLD 138 (174)
Q Consensus 71 ~~-------~~~-~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~s 138 (174)
.+ +.. ...++.++++|+|.++.......+...+ .+.+......+...+ |++++... ...+++|.+
T Consensus 263 ~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~-~nlLkp~L~~g~i~v--IgATt~~E~~~~~~~D~AL~r 339 (758)
T PRK11034 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA-ANLIKPLLSSGKIRV--IGSTTYQEFSNIFEKDRALAR 339 (758)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHH-HHHHHHHHhCCCeEE--EecCChHHHHHHhhccHHHHh
Confidence 22 111 1124566677888774332111111111 011122222333333 66664332 357999999
Q ss_pred ceeeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 RMVIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 R~~~i~~~~~~~~e~~~il~~~l~ 162 (174)
||+.|.+++|+.++..+||+....
T Consensus 340 RFq~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 340 RFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997543
No 139
>KOG0741|consensus
Probab=99.37 E-value=1e-13 Score=110.64 Aligned_cols=135 Identities=27% Similarity=0.363 Sum_probs=91.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh-hhc-------------c--CcEEEEE
Q psy14616 23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET-EMI-------------E--GEVVEIQ 86 (174)
Q Consensus 23 ~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~--~~i~~~~ 86 (174)
.+.+++|||||||||||.+||.+...||..-| .-+++-.+.++++++++... .++ + -.|+++|
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP-KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDE 332 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNAREP-KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDE 332 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCCCC-cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehh
Confidence 33569999999999999999999999987644 34677788899999987221 111 1 1688889
Q ss_pred EeccCCCCCCccce-------eEEEeccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHH
Q psy14616 87 IERPATGLGSKVGK-------LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAI 156 (174)
Q Consensus 87 id~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~i 156 (174)
||.+....+...+. ..=....++....+.|.++ |+.| |+..-++++|+ .|+ ..+++.-|++.-..+|
T Consensus 333 iDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILV--IGMT-NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQI 409 (744)
T KOG0741|consen 333 IDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILV--IGMT-NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQI 409 (744)
T ss_pred hHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEE--Eecc-CchhhHHHHhcCCCceEEEEEEeCCCccCceEE
Confidence 99773222211110 0001123455556667776 7777 89999999999 688 4567776777767777
Q ss_pred HHHHh
Q psy14616 157 LKIRL 161 (174)
Q Consensus 157 l~~~l 161 (174)
++.+.
T Consensus 410 l~IHT 414 (744)
T KOG0741|consen 410 LKIHT 414 (744)
T ss_pred EEhhh
Confidence 66654
No 140
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.5e-12 Score=96.36 Aligned_cols=89 Identities=25% Similarity=0.382 Sum_probs=58.9
Q ss_pred CCchHHHHHHHHHHH----HHHHhc-C-----cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccc-----ccch
Q psy14616 1 MVGQLQARRAAGVVL----GMIKEG-K-----IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-----EIYS 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~----~~~~~g-~-----~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~-----~~~~ 65 (174)
||||+.+|+.|.... ..+... . +...|+||.||+|+|||.||+-||+.|+ +||....+. .+.+
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln--VPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN--VPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC--CCeeeccccchhhccccc
Confidence 689999998866421 222211 1 1246999999999999999999999998 667544433 3333
Q ss_pred hhhhhhh---------hhhhhccCcEEEEEEeccC
Q psy14616 66 LEMNKTE---------EETEMIEGEVVEIQIERPA 91 (174)
Q Consensus 66 ~~~~~~~---------~~~~~~~~~i~~~~id~~~ 91 (174)
-++..+- |....-.|.++++|||++.
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIa 175 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIA 175 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence 2222211 2223347899999999983
No 141
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.34 E-value=1.8e-11 Score=95.27 Aligned_cols=144 Identities=28% Similarity=0.362 Sum_probs=77.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc-cchhhhhhhhhh-----
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE-IYSLEMNKTEEE----- 74 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~~~----- 74 (174)
++|+++++..+.... ..+.+++|.||||||||++|+.+|+.++.+ |..+.+.. +...+.-.....
T Consensus 26 ~~g~~~~~~~~l~a~-------~~~~~vll~G~PG~gKT~la~~lA~~l~~~--~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 26 VVGDEEVIELALLAL-------LAGGHVLLEGPPGVGKTLLARALARALGLP--FVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred eeccHHHHHHHHHHH-------HcCCCEEEECCCCccHHHHHHHHHHHhCCC--eEEEecCCCCCHHHhcCchhHhhhhc
Confidence 356666664332222 235799999999999999999999999955 54444331 111111111110
Q ss_pred ----hhhcc-----C---cEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccC-----CC
Q psy14616 75 ----TEMIE-----G---EVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYS-----SP 129 (174)
Q Consensus 75 ----~~~~~-----~---~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~ 129 (174)
....+ . .++++||++.... .++. .+....... +.++...+ .++|. | ..
T Consensus 97 ~~~~~~~~~gpl~~~~~~ill~DEInra~p~----~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~-viaT~-Np~e~~g~ 169 (329)
T COG0714 97 EPGEFRFVPGPLFAAVRVILLLDEINRAPPE----VQNALLEALEERQVTVPGLTT-IRLPPPFI-VIATQ-NPGEYEGT 169 (329)
T ss_pred cCCeEEEecCCcccccceEEEEeccccCCHH----HHHHHHHHHhCcEEEECCcCC-cCCCCCCE-EEEcc-CccccCCC
Confidence 11112 2 4455677666222 2221 111111111 33444333 14454 6 44
Q ss_pred CCCCHHhhcce-eeEecCCCC-HHHHHHHHHHH
Q psy14616 130 HGIPIDLLDRM-VIIPTQPYQ-DEEIQAILKIR 160 (174)
Q Consensus 130 ~~l~~~l~sR~-~~i~~~~~~-~~e~~~il~~~ 160 (174)
+.+++++++|| ..++++.+. .++...++.+.
T Consensus 170 ~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 170 YPLPEALLDRFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred cCCCHHHHhhEEEEEecCCCCchHHHHHHHHhC
Confidence 67899999999 778888774 44444444443
No 142
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.33 E-value=2.3e-12 Score=111.21 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=85.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccc--hhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIY--SLEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~--~~~~~~ 70 (174)
+||+++.++. +...+.... ..+++|+||||||||++++++|+.+.. ...+..++.+.+. ..+.+.
T Consensus 175 ~igr~~ei~~---~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~ 249 (852)
T TIGR03346 175 VIGRDEEIRR---TIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE 249 (852)
T ss_pred CCCcHHHHHH---HHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhh
Confidence 5898887644 443333332 359999999999999999999998732 1223333333322 112222
Q ss_pred hh-------hhhhh--ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhh
Q psy14616 71 TE-------EETEM--IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLL 137 (174)
Q Consensus 71 ~~-------~~~~~--~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~ 137 (174)
.+ +.... .+..++++|+|.+.... ...+..... ..+......+.. .+|++++..+ ..+++++.
T Consensus 250 ~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g-~~~~~~d~~-~~Lk~~l~~g~i--~~IgaTt~~e~r~~~~~d~al~ 325 (852)
T TIGR03346 250 FEERLKAVLNEVTKSEGQIILFIDELHTLVGAG-KAEGAMDAG-NMLKPALARGEL--HCIGATTLDEYRKYIEKDAALE 325 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCC-CCcchhHHH-HHhchhhhcCce--EEEEeCcHHHHHHHhhcCHHHH
Confidence 22 11111 12345666777764211 111110000 001111122222 2366665444 35799999
Q ss_pred cceeeEecCCCCHHHHHHHHHHHh
Q psy14616 138 DRMVIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 138 sR~~~i~~~~~~~~e~~~il~~~l 161 (174)
+||+.+.+..|+.++...|++...
T Consensus 326 rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 326 RRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hcCCEEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999999998753
No 143
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.33 E-value=8.7e-12 Score=98.23 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=86.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-------CCeeeecccccchh------h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-------TPFTSMAGSEIYSL------E 67 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-------~~~~~~~~~~~~~~------~ 67 (174)
++|.+.-.+.|..+......+.. +.+++++||||||||++++.+++.+... ..++.+++....+. -
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~-~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSR-PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCC-CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 57888777666665544333433 3689999999999999999999876311 33455555332210 0
Q ss_pred hhhh--------------h----hhhh-hc-cC---cEEEEEEeccCCCCCCcccee-EEEeccchhhhccccccchhhh
Q psy14616 68 MNKT--------------E----EETE-MI-EG---EVVEIQIERPATGLGSKVGKL-TMKTTEMETSYDLGAKMIEAIG 123 (174)
Q Consensus 68 ~~~~--------------~----~~~~-~~-~~---~i~~~~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~ 123 (174)
..+. . ...+ +. .+ .++++|+|.+. +. ....+ .+............+..+ ++
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~--~~~~L~~l~~~~~~~~~~~~~v~l--I~ 170 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GD--DDDLLYQLSRARSNGDLDNAKVGV--IG 170 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cC--CcHHHHhHhccccccCCCCCeEEE--EE
Confidence 0000 0 0000 10 12 34566777664 21 11111 000000000011123333 44
Q ss_pred cccCCC---CCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616 124 TAYSSP---HGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 124 ~~~~~~---~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~ 162 (174)
.+ |.+ ..+++.+.+|| ..+.|++|+.+++.++++.++.
T Consensus 171 i~-n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 171 IS-NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred EE-CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 44 333 35889999999 5799999999999999999874
No 144
>KOG0730|consensus
Probab=99.32 E-value=1.2e-12 Score=106.73 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=98.3
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh-------hhhhc--cCcEEEEEEecc
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE-------ETEMI--EGEVVEIQIERP 90 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~i~~~~id~~ 90 (174)
.|..+++++|+|||||||||.+++++|++.+ ..+..+++..+++...++.+. .+... |..++++|||.+
T Consensus 213 ~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~--a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l 290 (693)
T KOG0730|consen 213 IGIKPPRGLLLYGPPGTGKTFLVRAVANEYG--AFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDAL 290 (693)
T ss_pred cCCCCCCCccccCCCCCChHHHHHHHHHHhC--ceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhh
Confidence 3566689999999999999999999999998 557788888888888877762 23222 556677788887
Q ss_pred CCCCCCccc-eeEEEec---cchhhhccccccchhhhcccCCCCCCCHHhhc-ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 91 ATGLGSKVG-KLTMKTT---EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD-RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 91 ~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s-R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
..+...... ....... .++.....++.++ ++++ |++..+++++++ || ..+.+.-|+..+..+|++....+.
T Consensus 291 ~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~viv--l~at-nrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~ 367 (693)
T KOG0730|consen 291 CPKREGADDVESRVVSQLLTLLDGLKPDAKVIV--LAAT-NRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM 367 (693)
T ss_pred CCcccccchHHHHHHHHHHHHHhhCcCcCcEEE--EEec-CCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc
Confidence 544311111 0000111 1112222234444 5565 899999999996 99 788888899999999999876554
Q ss_pred hh
Q psy14616 165 ER 166 (174)
Q Consensus 165 ~~ 166 (174)
..
T Consensus 368 ~~ 369 (693)
T KOG0730|consen 368 NL 369 (693)
T ss_pred CC
Confidence 43
No 145
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.32 E-value=1.5e-11 Score=94.54 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=76.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--hhhhh----hhh---hhh---------ccC-cEE
Q psy14616 23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--EMNKT----EEE---TEM---------IEG-EVV 83 (174)
Q Consensus 23 ~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~----~~~---~~~---------~~~-~i~ 83 (174)
..+++++|.||||||||++++.+|+.++.. +..++....... .+|.. .+. .+. ..+ .++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~--~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~ill 139 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWP--CVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALC 139 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCC--eEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEE
Confidence 345799999999999999999999999965 444443222111 12211 010 111 223 366
Q ss_pred EEEEeccCCCCC-------CccceeEEEeccchhhhccccccchhhhcccCCC------------CCCCHHhhccee-eE
Q psy14616 84 EIQIERPATGLG-------SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP------------HGIPIDLLDRMV-II 143 (174)
Q Consensus 84 ~~~id~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~l~~~l~sR~~-~i 143 (174)
++|+|++-.... +..+.+.+.+. ...+. ++..|..|||. |+. ..+++++++||. ++
T Consensus 140 lDEin~a~p~~~~~L~~lLE~~~~l~i~~~--~~~i~-~hp~FrviAT~-Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~ 215 (327)
T TIGR01650 140 FDEYDAGRPDVMFVIQRVLEAGGKLTLLDQ--NRVIR-AHPAFRLFATA-NTIGLGDTTGLYHGTQQINQAQMDRWSIVT 215 (327)
T ss_pred echhhccCHHHHHHHHHHhccCCeEEECCC--ceEec-CCCCeEEEEee-CCCCcCCCCcceeeeecCCHHHHhheeeEe
Confidence 778887622210 00112222111 11111 22234446776 663 337999999995 56
Q ss_pred ecCCCCHHHHHHHHHHHh
Q psy14616 144 PTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 144 ~~~~~~~~e~~~il~~~l 161 (174)
.+..++.++-.+|+....
T Consensus 216 ~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 216 TLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eCCCCCHHHHHHHHHhhc
Confidence 899999888888887653
No 146
>PRK08727 hypothetical protein; Validated
Probab=99.31 E-value=1.6e-11 Score=91.21 Aligned_cols=127 Identities=21% Similarity=0.206 Sum_probs=71.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhhc--cCcEEEEEEeccCCCCCCccceeE
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEMI--EGEVVEIQIERPATGLGSKVGKLT 102 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~id~~~~~~~~~~~~~~ 102 (174)
..++|+||+|||||+++.+++..+... .....++...... ...+.-+.+ ...++++++|.+.... ..+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~----~~~~~~~~l~~~dlLiIDDi~~l~~~~--~~~~~l 115 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG----RLRDALEALEGRSLVALDGLESIAGQR--EDEVAL 115 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh----hHHHHHHHHhcCCEEEEeCcccccCCh--HHHHHH
Confidence 579999999999999999998876321 1122333222111 001111111 1345666776652221 111111
Q ss_pred EEeccchhhhccccccchhhhcccCCCCC---CCHHhhcc---eeeEecCCCCHHHHHHHHHHHhch
Q psy14616 103 MKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDR---MVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR---~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
|. ......+.... + +.|+...+.. +++.++|| +.++.+++|+.+++.++++++...
T Consensus 116 f~--l~n~~~~~~~~-v--I~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 116 FD--FHNRARAAGIT-L--LYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred HH--HHHHHHHcCCe-E--EEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 11 11111111211 2 4566456654 47999999 578999999999999999986544
No 147
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.31 E-value=2.7e-11 Score=93.99 Aligned_cols=45 Identities=33% Similarity=0.460 Sum_probs=35.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
|+||+++++++.... +..| .+|+||.||||||||++|+++|..+.
T Consensus 10 i~Gq~~~~~~l~~~~--~~~~---~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 10 IVGQEEMKQAMVLTA--IDPG---IGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred hCCHHHHHHHHHHHH--hccC---CCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 689999997665422 2222 26999999999999999999999984
No 148
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.30 E-value=2e-11 Score=103.24 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-------CC-CCeeeecccccchhh-----
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-------PD-TPFTSMAGSEIYSLE----- 67 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-------~~-~~~~~~~~~~~~~~~----- 67 (174)
+.|.|+=++.|..++.-.-.|..++..++++|+||||||++++.+.+.|- .. +.++.++|..+...+
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 35666666666655544333444434456999999999999999987761 11 345667763322111
Q ss_pred -hhhhh-----------hh-hhhc---------cCcEEEEEEeccCCCCCCccceeEEE-eccchhhhccccccchhhhc
Q psy14616 68 -MNKTE-----------EE-TEMI---------EGEVVEIQIERPATGLGSKVGKLTMK-TTEMETSYDLGAKMIEAIGT 124 (174)
Q Consensus 68 -~~~~~-----------~~-~~~~---------~~~i~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~ 124 (174)
..++. .. ..++ ...|+++|+|.+.... +.+.+. ..+ ....-....+..++.
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~--~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDW--PTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHH--hhccCCeEEEEEecC
Confidence 00000 00 0111 1135666777663321 111110 000 000112233322232
Q ss_pred ccCCCCCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhch
Q psy14616 125 AYSSPHGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 125 ~~~~~~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+.+.+..+++.+.||| ..+.|+||+.+++.+||+.++..
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 2334567889999999 45899999999999999998753
No 149
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=3.3e-11 Score=95.92 Aligned_cols=155 Identities=18% Similarity=0.132 Sum_probs=83.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhh------hhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLE------MNKT 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~------~~~~ 71 (174)
++|.++-.+.+..+..-.-.+.. +.+++++||||||||++++.+++.+.. ...++.+++....+.. ..++
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~-~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 110 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSR-PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL 110 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence 46777777666555533322332 358999999999999999999987732 2445666654321100 0000
Q ss_pred ------------h---hh-hhh--ccC---cEEEEEEeccCCCCCCcccee-EEEeccchhhhccccccchhhhcc--cC
Q psy14616 72 ------------E---EE-TEM--IEG---EVVEIQIERPATGLGSKVGKL-TMKTTEMETSYDLGAKMIEAIGTA--YS 127 (174)
Q Consensus 72 ------------~---~~-~~~--~~~---~i~~~~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~--~~ 127 (174)
. +. .+. ..+ .++++|+|.+.... ....+ .+.. .... ....+..+ |+.+ .+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--~~~~l~~l~~-~~~~-~~~~~v~v--I~i~~~~~ 184 (394)
T PRK00411 111 FGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--GNDVLYSLLR-AHEE-YPGARIGV--IGISSDLT 184 (394)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--CchHHHHHHH-hhhc-cCCCeEEE--EEEECCcc
Confidence 0 00 000 122 24455666653111 11111 0000 0000 01112333 3333 22
Q ss_pred CCCCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616 128 SPHGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 128 ~~~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~ 162 (174)
....+++.+.+|+ ..+.|++|+.+++.++++.++.
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 2245788899998 6789999999999999998874
No 150
>PRK06620 hypothetical protein; Validated
Probab=99.25 E-value=3e-11 Score=88.56 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccCcEEEEEEeccCCCCCCccceeEEEe
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~ 105 (174)
+.++||||||+|||++++++++..+. .+ .+.... . +........++++++|.. . +...|
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--~~--~~~~~~-~-------~~~~~~~d~lliDdi~~~-~------~~~lf-- 103 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA--YI--IKDIFF-N-------EEILEKYNAFIIEDIENW-Q------EPALL-- 103 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC--EE--cchhhh-c-------hhHHhcCCEEEEeccccc-h------HHHHH--
Confidence 57999999999999999999987652 11 111110 0 000001123444555532 1 00000
Q ss_pred ccchhhhccccccchhhhcccCCC-CCCCHHhhccee---eEecCCCCHHHHHHHHHHHhchh
Q psy14616 106 TEMETSYDLGAKMIEAIGTAYSSP-HGIPIDLLDRMV---IIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 106 ~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~l~sR~~---~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.-.....+.+..++ +++++.++ ..+ ++|+||+. ++.+.+++.+++..++++....+
T Consensus 104 ~l~N~~~e~g~~il--its~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 104 HIFNIINEKQKYLL--LTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred HHHHHHHhcCCEEE--EEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 00111112233333 44442222 235 99999996 89999999999999998876543
No 151
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.25 E-value=2e-11 Score=98.03 Aligned_cols=144 Identities=17% Similarity=0.249 Sum_probs=77.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec-----ccccchhh-hhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA-----GSEIYSLE-MNKTEEE 74 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~-----~~~~~~~~-~~~~~~~ 74 (174)
|+|++++++.+.... ..+.++||.||||||||++|+++++..+...+|.... ..++++.. +....+.
T Consensus 22 i~gre~vI~lll~aa-------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~ 94 (498)
T PRK13531 22 LYERSHAIRLCLLAA-------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE 94 (498)
T ss_pred ccCcHHHHHHHHHHH-------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhc
Confidence 578888886655544 3457999999999999999999999875432333222 22222211 1111100
Q ss_pred h---hhccC------cEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCCC---CCCH
Q psy14616 75 T---EMIEG------EVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPI 134 (174)
Q Consensus 75 ~---~~~~~------~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~ 134 (174)
. ...+| .++.+||.++ +. ..++. .+.. -.....++...+ ++++ |+.. ...+
T Consensus 95 g~f~r~~~G~L~~A~lLfLDEI~ra-sp---~~QsaLLeam~Er~~t~--g~~~~~lp~rfi--v~AT-N~LPE~g~~le 165 (498)
T PRK13531 95 GRYQRLTSGYLPEAEIVFLDEIWKA-GP---AILNTLLTAINERRFRN--GAHEEKIPMRLL--VTAS-NELPEADSSLE 165 (498)
T ss_pred CchhhhcCCccccccEEeecccccC-CH---HHHHHHHHHHHhCeEec--CCeEEeCCCcEE--EEEC-CCCcccCCchH
Confidence 1 12223 2444555544 22 12221 1111 122223333333 3344 5322 2446
Q ss_pred Hhhcce-eeEecCCCC-HHHHHHHHHHH
Q psy14616 135 DLLDRM-VIIPTQPYQ-DEEIQAILKIR 160 (174)
Q Consensus 135 ~l~sR~-~~i~~~~~~-~~e~~~il~~~ 160 (174)
++.+|| ..+.+++++ .++..++|...
T Consensus 166 AL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 166 ALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred HhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 999999 568888887 45667888764
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.9e-11 Score=101.51 Aligned_cols=150 Identities=26% Similarity=0.348 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhhhhhh-------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEMNKTE------- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~------- 72 (174)
+||.++-++.....+ .. ...+|-+|.|+||||||.++..+|.++ +.++| ..+....+++.+++...
T Consensus 172 vIGRd~EI~r~iqIL---~R--R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP-~~L~~~~i~sLD~g~LvAGakyRG 245 (786)
T COG0542 172 VIGRDEEIRRTIQIL---SR--RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVP-ESLKDKRIYSLDLGSLVAGAKYRG 245 (786)
T ss_pred CcChHHHHHHHHHHH---hc--cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCC-HHHcCCEEEEecHHHHhccccccC
Confidence 578766664433322 22 223688999999999999999999988 33343 22455556666666555
Q ss_pred ----------hhhhhccC-cEEEEEEeccCCCCCCccceeEEEecc-chhhhccccccchhhhcccCCCC----CCCHHh
Q psy14616 73 ----------EETEMIEG-EVVEIQIERPATGLGSKVGKLTMKTTE-METSYDLGAKMIEAIGTAYSSPH----GIPIDL 136 (174)
Q Consensus 73 ----------~~~~~~~~-~i~~~~id~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~----~l~~~l 136 (174)
++.+..+. .++++|+|-+. +.+...+. .+.... +... +...-+.+|++|+-..+ .-+++|
T Consensus 246 eFEeRlk~vl~ev~~~~~vILFIDEiHtiV-GAG~~~G~-a~DAaNiLKPa--LARGeL~~IGATT~~EYRk~iEKD~AL 321 (786)
T COG0542 246 EFEERLKAVLKEVEKSKNVILFIDEIHTIV-GAGATEGG-AMDAANLLKPA--LARGELRCIGATTLDEYRKYIEKDAAL 321 (786)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEechhhhc-CCCccccc-ccchhhhhHHH--HhcCCeEEEEeccHHHHHHHhhhchHH
Confidence 11111122 23334555542 22212222 222111 1111 22222333665544432 358999
Q ss_pred hcceeeEecCCCCHHHHHHHHHHH
Q psy14616 137 LDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 137 ~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
-+|||.|.+..|+.++...||+..
T Consensus 322 ~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 322 ERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HhcCceeeCCCCCHHHHHHHHHHH
Confidence 999999999999999999999983
No 153
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2e-11 Score=92.85 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh---hhhhhhhhhc--
Q psy14616 4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM---NKTEEETEMI-- 78 (174)
Q Consensus 4 ~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-- 78 (174)
|..++ ..+..++++++.+ |.+||+|| +||+++|+++|+.+.|..+.....|+.|.++.. +.-.|...+.
T Consensus 7 q~~~~---~~L~~~~~~~rl~-hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~ 80 (290)
T PRK07276 7 QPKVF---QRFQTILEQDRLN-HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ 80 (290)
T ss_pred HHHHH---HHHHHHHHcCCcc-eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC
Confidence 45555 7777788899887 99999996 689999999999997653211112222221110 0000000000
Q ss_pred -----------------------cCc-EEEEEEeccCCCCCCccceeEEEeccchhhhcccc--ccchhhhcccCCCCCC
Q psy14616 79 -----------------------EGE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGA--KMIEAIGTAYSSPHGI 132 (174)
Q Consensus 79 -----------------------~~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~l 132 (174)
..+ +++.+.|++ +. +..|..++ +.+.++ +.| |..+ +.+..+
T Consensus 81 ~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-~~---~AaNaLLK------tLEEPp~~t~~--iL~t-~~~~~l 147 (290)
T PRK07276 81 GQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-HV---NAANSLLK------VIEEPQSEIYI--FLLT-NDENKV 147 (290)
T ss_pred CCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-CH---HHHHHHHH------HhcCCCCCeEE--EEEE-CChhhC
Confidence 112 233344444 21 12222222 222222 334 3344 568899
Q ss_pred CHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616 133 PIDLLDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 133 ~~~l~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
.|+++|||+.++|++ +.+++.++++..
T Consensus 148 LpTI~SRcq~i~f~~-~~~~~~~~L~~~ 174 (290)
T PRK07276 148 LPTIKSRTQIFHFPK-NEAYLIQLLEQK 174 (290)
T ss_pred chHHHHcceeeeCCC-cHHHHHHHHHHc
Confidence 999999999999977 778888888754
No 154
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2e-11 Score=94.58 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=32.2
Q ss_pred hhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616 122 IGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 122 i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
|.++ ..+..++++++|||+.+.|++++.++..++|+..
T Consensus 147 Ilvt-h~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 147 LLVS-HAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred EEEe-CChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4455 4667899999999999999999999999998764
No 155
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.24 E-value=4.1e-11 Score=95.80 Aligned_cols=146 Identities=15% Similarity=0.170 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhhhhhhhh-----hhhhc--cCc
Q psy14616 12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLEMNKTEE-----ETEMI--EGE 81 (174)
Q Consensus 12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~ 81 (174)
....+..++.......++|+||||+|||+|++++++++.. ...+..+++..+.........+ -.+.+ .+.
T Consensus 123 ~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 202 (405)
T TIGR00362 123 AAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDL 202 (405)
T ss_pred HHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCE
Confidence 4444444442222357899999999999999999998732 2334555654443222211111 01111 234
Q ss_pred EEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHH
Q psy14616 82 VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQA 155 (174)
Q Consensus 82 i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~ 155 (174)
++++++|.+.... ..+...+. -+....+....+ +.++...+. .+++.++||| .++.+.+|+.+++..
T Consensus 203 LiiDDi~~l~~~~--~~~~~l~~--~~n~~~~~~~~i---iits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 203 LLIDDIQFLAGKE--RTQEEFFH--TFNALHENGKQI---VLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred EEEehhhhhcCCH--HHHHHHHH--HHHHHHHCCCCE---EEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 6667777652221 01111110 011111112222 334434443 3678999999 479999999999999
Q ss_pred HHHHHhchh
Q psy14616 156 ILKIRLVKN 164 (174)
Q Consensus 156 il~~~l~~~ 164 (174)
|++.....+
T Consensus 276 il~~~~~~~ 284 (405)
T TIGR00362 276 ILQKKAEEE 284 (405)
T ss_pred HHHHHHHHc
Confidence 999987553
No 156
>PRK05642 DNA replication initiation factor; Validated
Probab=99.24 E-value=8.1e-11 Score=87.45 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhhhhhhh-hcc-CcEEEEEEeccCCCCCCcc-cee
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKTEEETE-MIE-GEVVEIQIERPATGLGSKV-GKL 101 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~~id~~~~~~~~~~-~~~ 101 (174)
.+++|+||+|+|||+|++++++++. ......+++..++... . .+..+ +.. ..+++++++.. .+. +. +..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-~---~~~~~~~~~~d~LiiDDi~~~-~~~--~~~~~~ 118 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-G---PELLDNLEQYELVCLDDLDVI-AGK--ADWEEA 118 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-h---HHHHHhhhhCCEEEEechhhh-cCC--hHHHHH
Confidence 6889999999999999999998652 1122344444443321 0 11111 111 23444555543 221 11 111
Q ss_pred EEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcce---eeEecCCCCHHHHHHHHHHHhch
Q psy14616 102 TMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.|. . .....+....+ +.+++..+ ....|.++||| .++.+.+++.+++..+++.+...
T Consensus 119 Lf~-l-~n~~~~~g~~i---lits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 119 LFH-L-FNRLRDSGRRL---LLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred HHH-H-HHHHHhcCCEE---EEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 100 0 01111112222 33443334 22479999999 88999999999999999965433
No 157
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.23 E-value=7e-11 Score=87.35 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=69.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhhhhhhhhhhh-ccCcEEEEEEeccCCCCCCcccee
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEMNKTEEETEM-IEGEVVEIQIERPATGLGSKVGKL 101 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~id~~~~~~~~~~~~~ 101 (174)
...+++|+||+|||||++|+++++.+ ........+++...... .... ..+.++++++|.+ +. ..+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~liiDdi~~l-~~---~~~~~ 109 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA-------FDFDPEAELYAVDDVERL-DD---AQQIA 109 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH-------HhhcccCCEEEEeChhhc-Cc---hHHHH
Confidence 34799999999999999999999876 22234455555443211 0111 1234666677665 32 11111
Q ss_pred EEEeccchhhhccccccchhhhcccCCC--CCCCHHhhcce---eeEecCCCCHHHHHHHHHHHh
Q psy14616 102 TMKTTEMETSYDLGAKMIEAIGTAYSSP--HGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l 161 (174)
.+. .+..........+ +.+++..+ ..+.+.+.||| ..++++++++++...+++...
T Consensus 110 L~~--~~~~~~~~~~~~v--l~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 110 LFN--LFNRVRAHGQGAL--LVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred HHH--HHHHHHHcCCcEE--EEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 100 1111111122212 23332222 23568899997 689999999988888887644
No 158
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.23 E-value=6.2e-11 Score=94.47 Aligned_cols=27 Identities=44% Similarity=0.619 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+++++|+||||||||++|+.+|..++.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 469999999999999999999998854
No 159
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.23 E-value=2.6e-11 Score=98.18 Aligned_cols=145 Identities=15% Similarity=0.140 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhhhhhhh-----hhhh--ccCc
Q psy14616 12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEMNKTEE-----ETEM--IEGE 81 (174)
Q Consensus 12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~ 81 (174)
..+....++.......++|+||||+|||++++++++++... .....+++..+.......... ..+. ....
T Consensus 135 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 214 (450)
T PRK00149 135 AAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDV 214 (450)
T ss_pred HHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCE
Confidence 34444444322223579999999999999999999988322 334455555443322222110 0111 1334
Q ss_pred EEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhcce---eeEecCCCCHHHHHH
Q psy14616 82 VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRM---VIIPTQPYQDEEIQA 155 (174)
Q Consensus 82 i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~---~~i~~~~~~~~e~~~ 155 (174)
++++++|.+.... ..+...+. -+...++....+ +.+++..+.. +.+.++||| .++.+.+|+.+++.+
T Consensus 215 LiiDDi~~l~~~~--~~~~~l~~--~~n~l~~~~~~i---iits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 215 LLIDDIQFLAGKE--RTQEEFFH--TFNALHEAGKQI---VLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred EEEehhhhhcCCH--HHHHHHHH--HHHHHHHCCCcE---EEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 5666776552221 11111110 011112222222 3344344433 679999999 589999999999999
Q ss_pred HHHHHhch
Q psy14616 156 ILKIRLVK 163 (174)
Q Consensus 156 il~~~l~~ 163 (174)
|++.....
T Consensus 288 il~~~~~~ 295 (450)
T PRK00149 288 ILKKKAEE 295 (450)
T ss_pred HHHHHHHH
Confidence 99998754
No 160
>PHA02244 ATPase-like protein
Probab=99.22 E-value=3.2e-11 Score=93.87 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhh-------hhhhhh---hhc-cC
Q psy14616 12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMN-------KTEEET---EMI-EG 80 (174)
Q Consensus 12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~-~~ 80 (174)
..+..+++. +.+++|+||||||||++|+++|+.++. +++.++.... ...+. ...+.. ... .+
T Consensus 110 ~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~~lg~--pfv~In~l~d-~~~L~G~i~~~g~~~dgpLl~A~~~Gg 182 (383)
T PHA02244 110 ADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAEALDL--DFYFMNAIMD-EFELKGFIDANGKFHETPFYEAFKKGG 182 (383)
T ss_pred HHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhCC--CEEEEecChH-HHhhcccccccccccchHHHHHhhcCC
Confidence 344444444 358999999999999999999999984 4666553210 00110 000000 012 34
Q ss_pred cEEEEEEeccCCCCC------CccceeEEEeccchhhhccccccchhhhcccCCC-----------CCCCHHhhcceeeE
Q psy14616 81 EVVEIQIERPATGLG------SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP-----------HGIPIDLLDRMVII 143 (174)
Q Consensus 81 ~i~~~~id~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~l~~~l~sR~~~i 143 (174)
.++++|+|.+..... .+...+.+. ..... .+.-|..|+|+ |.. ..+++++++||..+
T Consensus 183 vLiLDEId~a~p~vq~~L~~lLd~r~l~l~----g~~i~-~h~~FRlIATs-N~~~~G~~~~y~G~k~L~~AllDRFv~I 256 (383)
T PHA02244 183 LFFIDEIDASIPEALIIINSAIANKFFDFA----DERVT-AHEDFRVISAG-NTLGKGADHIYVARNKIDGATLDRFAPI 256 (383)
T ss_pred EEEEeCcCcCCHHHHHHHHHHhccCeEEec----CcEEe-cCCCEEEEEee-CCCccCcccccCCCcccCHHHHhhcEEe
Confidence 566678876521110 001111111 11111 11223336666 542 45899999999999
Q ss_pred ecCCCCHHHH
Q psy14616 144 PTQPYQDEEI 153 (174)
Q Consensus 144 ~~~~~~~~e~ 153 (174)
+++.+++.|.
T Consensus 257 ~~dyp~~~E~ 266 (383)
T PHA02244 257 EFDYDEKIEH 266 (383)
T ss_pred eCCCCcHHHH
Confidence 9988874443
No 161
>KOG2035|consensus
Probab=99.21 E-value=3.8e-11 Score=89.28 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=36.1
Q ss_pred cccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616 124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 124 ~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
..+|..+++.++++|||..++.+.|+++|+..+++..+.++
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 33488899999999999999999999999999999977554
No 162
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.21 E-value=7.2e-11 Score=86.85 Aligned_cols=133 Identities=19% Similarity=0.278 Sum_probs=70.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecccccchhhhhhhhh-----hh-hhc-cCcEEEEEEeccCCCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAGSEIYSLEMNKTEE-----ET-EMI-EGEVVEIQIERPATGLG 95 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~-~~~i~~~~id~~~~~~~ 95 (174)
..+++|||+|+|||+|.+++++++ .......+++...+.........+ -. ... ...+++++++.+ .+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l-~~~~ 113 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFL-AGKQ 113 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG-TTHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhh-cCch
Confidence 478999999999999999999875 233445566655544322222211 11 111 234555666665 2210
Q ss_pred CccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 96 SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
..+...|. -..........+ +.++...|. .+.+.|.||+ .++++.+|+.+++.+++++....+.
T Consensus 114 -~~q~~lf~--l~n~~~~~~k~l---i~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 114 -RTQEELFH--LFNRLIESGKQL---ILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp -HHHHHHHH--HHHHHHHTTSEE---EEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHH--HHHHHHhhCCeE---EEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 00111111 011111222333 334434443 3679999999 6899999999999999999776544
No 163
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.20 E-value=7e-12 Score=85.76 Aligned_cols=33 Identities=42% Similarity=0.595 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA 59 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~ 59 (174)
+++|+||||||||++|+.+|+.++.....+.++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~ 33 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCS 33 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-T
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEec
Confidence 589999999999999999999997553333333
No 164
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.18 E-value=8.6e-11 Score=86.61 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhhhhhhhccCcE
Q psy14616 4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTEEETEMIEGEV 82 (174)
Q Consensus 4 ~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (174)
.+.+..++..+ +... .+.+++|+||+|||||++|+++++.+.. ...+..+++..+.... ....+.. ...+.+
T Consensus 22 ~~~~~~~l~~~---~~~~--~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~lL 94 (226)
T TIGR03420 22 NAELLAALRQL---AAGK--GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD-PEVLEGL-EQADLV 94 (226)
T ss_pred cHHHHHHHHHH---HhcC--CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-HHHHhhc-ccCCEE
Confidence 44455444443 3332 2469999999999999999999988732 2345555554443211 0000000 012346
Q ss_pred EEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC--C-CHHhhcce---eeEecCCCCHHHHHHH
Q psy14616 83 VEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG--I-PIDLLDRM---VIIPTQPYQDEEIQAI 156 (174)
Q Consensus 83 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~~~l~sR~---~~i~~~~~~~~e~~~i 156 (174)
+++++|.+.... ..+...+. .+....+... .+ +.+++..+.. . .+.+.+|+ ..+++++++.++...+
T Consensus 95 vIDdi~~l~~~~--~~~~~L~~--~l~~~~~~~~-~i--Iits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~ 167 (226)
T TIGR03420 95 CLDDVEAIAGQP--EWQEALFH--LYNRVREAGG-RL--LIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAA 167 (226)
T ss_pred EEeChhhhcCCh--HHHHHHHH--HHHHHHHcCC-eE--EEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHH
Confidence 667777652210 00111000 0011111112 22 3444333333 2 38899998 4799999999999999
Q ss_pred HHHHhc
Q psy14616 157 LKIRLV 162 (174)
Q Consensus 157 l~~~l~ 162 (174)
++....
T Consensus 168 l~~~~~ 173 (226)
T TIGR03420 168 LQSRAA 173 (226)
T ss_pred HHHHHH
Confidence 987653
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.17 E-value=3.3e-10 Score=83.44 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=87.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhhcc
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEMIE 79 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (174)
++|.|.-++.+..-....-+|.. .+|+||+|+.|||||++++++..+.... ...+.+....+... ..+.+.-.-.+
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~p-annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l--~~l~~~l~~~~ 105 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLP-ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL--PELLDLLRDRP 105 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCC-CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH--HHHHHHHhcCC
Confidence 57888888887766666666764 4899999999999999999999887432 33444544433221 11111111122
Q ss_pred CcEEEEEEecc-CCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC---------------C------C--H
Q psy14616 80 GEVVEIQIERP-ATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG---------------I------P--I 134 (174)
Q Consensus 80 ~~i~~~~id~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~---------------l------~--~ 134 (174)
.-+++++|.+ |... +..--.++..-....... .|+++ .||+ |+-.- + . -
T Consensus 106 -~kFIlf~DDLsFe~~--d~~yk~LKs~LeGgle~~P~Nvli--yATS-NRRHLv~E~~~d~~~~~~~eih~~d~~eEkl 179 (249)
T PF05673_consen 106 -YKFILFCDDLSFEEG--DTEYKALKSVLEGGLEARPDNVLI--YATS-NRRHLVPESFSDREDIQDDEIHPSDTIEEKL 179 (249)
T ss_pred -CCEEEEecCCCCCCC--cHHHHHHHHHhcCccccCCCcEEE--EEec-chhhccchhhhhccCCCccccCcchHHHHHH
Confidence 3455667766 3322 111111111000111111 12222 3444 33211 1 1 3
Q ss_pred Hhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 135 DLLDRM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 135 ~l~sR~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
+|.+|| ..+.|.+++.++-.+|++.++.
T Consensus 180 SLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 180 SLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred hHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 466999 7899999999999999999874
No 166
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=9.9e-11 Score=88.83 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
-..+...+++|+.+ |.+||+||+|+||+++|.++|+.+.|.
T Consensus 6 ~~~L~~~i~~~rl~-HAyLf~G~~G~Gk~~lA~~~A~~llC~ 46 (290)
T PRK05917 6 WEALIQRVRDQKVP-SAIILHGQDLSNLSARAYELASLILKE 46 (290)
T ss_pred HHHHHHHHHcCCcC-eeEeeECCCCCcHHHHHHHHHHHHhCC
Confidence 35677788899987 999999999999999999999999764
No 167
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=5.7e-11 Score=95.71 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhhhhhhh-----hhhhh---ccCcEEEEEEeccCCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLEMNKTE-----EETEM---IEGEVVEIQIERPATGL 94 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~i~~~~id~~~~~~ 94 (174)
.+++||||||+|||+|++++|+.+.. ......+++..+......... +-.+. .+..+++++++......
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 57999999999999999999998722 223445555443332221111 11111 13455666666552221
Q ss_pred CCccceeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhccee---eEecCCCCHHHHHHHHHHHhch
Q psy14616 95 GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRMV---IIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~~---~i~~~~~~~~e~~~il~~~l~~ 163 (174)
..+...|. .+....+....+ +.++...+.. +.+.+.|||. ++.+.+|+.+++..|+++....
T Consensus 211 --~~q~elf~--~~n~l~~~~k~i---Iitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 --GVQTELFH--TFNELHDSGKQI---VICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred --HHHHHHHH--HHHHHHHcCCeE---EEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 11111111 011222222222 3344344433 5688999994 8999999999999999987654
No 168
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.16 E-value=4.3e-12 Score=84.52 Aligned_cols=107 Identities=25% Similarity=0.394 Sum_probs=48.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccc-ccchhhhhhhh--h----hh-----hhccCcEEEEEEeccCCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-EIYSLEMNKTE--E----ET-----EMIEGEVVEIQIERPATGL 94 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~-~~~~~~~~~~~--~----~~-----~~~~~~i~~~~id~~~~~~ 94 (174)
|+||.|+||+|||++|+++|+.++.. |..+... ++...++.+.. + .. -++.+.++.+||+++..+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~--f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappkt 78 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLS--FKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKT 78 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT----EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCc--eeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHH
Confidence 68999999999999999999999965 4444332 23333332222 1 11 1233456666776662221
Q ss_pred CC------ccceeEEEeccchhhhccccccchhhhcccCCC-----CCCCHHhhccee
Q psy14616 95 GS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP-----HGIPIDLLDRMV 141 (174)
Q Consensus 95 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~l~sR~~ 141 (174)
+. .+..+.. ....+.++...++ |||. |+. +.+++++++||.
T Consensus 79 QsAlLeam~Er~Vt~----~g~~~~lp~pf~V-iATq-Np~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 79 QSALLEAMEERQVTI----DGQTYPLPDPFFV-IATQ-NPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp HHHHHHHHHHSEEEE----TTEEEE--SS-EE-EEEE--TT--S------HHHHTTSS
T ss_pred HHHHHHHHHcCeEEe----CCEEEECCCcEEE-EEec-CccccCceecCCHHHhcccc
Confidence 10 1111111 1223445554441 4444 765 359999999985
No 169
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=3.2e-10 Score=86.79 Aligned_cols=137 Identities=11% Similarity=0.109 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC---------C--eeeec--ccccchhhhhhhhhhhhh
Q psy14616 11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT---------P--FTSMA--GSEIYSLEMNKTEEETEM 77 (174)
Q Consensus 11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~---------~--~~~~~--~~~~~~~~~~~~~~~~~~ 77 (174)
+..+.+.+++|+.+ |.+||+|+.|+||+++++.+++.+.|.. + +..++ ...+...++....+....
T Consensus 5 ~~~l~~~i~~~~l~-haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKIS-HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCC-eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhcc
Confidence 36777888888887 8999999999999999999999985521 1 11122 111111111111111122
Q ss_pred cc---C--c-EEEEEEeccCCCCCCccceeEEEeccchhhhcccc-ccchhhhcccCCCCCCCHHhhcceeeEecCCCCH
Q psy14616 78 IE---G--E-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGA-KMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQD 150 (174)
Q Consensus 78 ~~---~--~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~ 150 (174)
.+ | + +++.+.|++ +. ..++..++. ..+.+. +.+ |..+ +.+..+.++++|||++++|.++++
T Consensus 84 ~~~~~~~~KvvII~~~e~m-~~---~a~NaLLK~-----LEEPp~~t~~--il~~-~~~~kll~TI~SRc~~~~f~~l~~ 151 (299)
T PRK07132 84 SSFVQSQKKILIIKNIEKT-SN---SLLNALLKT-----IEEPPKDTYF--LLTT-KNINKVLPTIVSRCQVFNVKEPDQ 151 (299)
T ss_pred CCcccCCceEEEEeccccc-CH---HHHHHHHHH-----hhCCCCCeEE--EEEe-CChHhChHHHHhCeEEEECCCCCH
Confidence 22 2 2 333344554 21 122211111 112222 333 3334 356889999999999999999999
Q ss_pred HHHHHHHHHH
Q psy14616 151 EEIQAILKIR 160 (174)
Q Consensus 151 ~e~~~il~~~ 160 (174)
+++.++|...
T Consensus 152 ~~l~~~l~~~ 161 (299)
T PRK07132 152 QKILAKLLSK 161 (299)
T ss_pred HHHHHHHHHc
Confidence 9999888774
No 170
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=3.9e-10 Score=91.08 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC---CCCCeeeecccccchhhhhhhhh-------hhh-hc-c
Q psy14616 12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG---PDTPFTSMAGSEIYSLEMNKTEE-------ETE-MI-E 79 (174)
Q Consensus 12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~-~ 79 (174)
.......++......+++|+|++|+|||+|++++++++. ......+++..++.......... ..+ .. .
T Consensus 128 ~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (450)
T PRK14087 128 IAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQN 207 (450)
T ss_pred HHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccC
Confidence 444444443222235799999999999999999999763 22334556655544332222111 001 11 2
Q ss_pred CcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcce---eeEecCCCCHHHH
Q psy14616 80 GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRM---VIIPTQPYQDEEI 153 (174)
Q Consensus 80 ~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~---~~i~~~~~~~~e~ 153 (174)
..+++++++.+.... ..+...|. .+....+....+ +.++...| ..+.+.|.||| .++.+.+|+.+++
T Consensus 208 dvLiIDDiq~l~~k~--~~~e~lf~--l~N~~~~~~k~i---Iltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 208 DVLIIDDVQFLSYKE--KTNEIFFT--IFNNFIENDKQL---FFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred CEEEEeccccccCCH--HHHHHHHH--HHHHHHHcCCcE---EEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 234555655442111 11111111 011111222222 33443344 33679999999 5899999999999
Q ss_pred HHHHHHHhchh
Q psy14616 154 QAILKIRLVKN 164 (174)
Q Consensus 154 ~~il~~~l~~~ 164 (174)
.++|++.+...
T Consensus 281 ~~iL~~~~~~~ 291 (450)
T PRK14087 281 TAIIKKEIKNQ 291 (450)
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 171
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=2e-10 Score=94.71 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=76.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhhhhhhhhh-----hhhc--cCcEEEEEEeccCCCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLEMNKTEEE-----TEMI--EGEVVEIQIERPATGLG 95 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~i~~~~id~~~~~~~ 95 (174)
+.++|||++|+|||+|+.++++.+.. .....+++...+.........+. .+.+ ...+++++|+.+....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE- 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH-
Confidence 45899999999999999999998732 23345555554443222222111 0111 2345566666552221
Q ss_pred CccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcce---eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 96 SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
..+...|. -+...++....+ +.++...+ ..+++.|+||| .++.+.+++.+.+..||+++...+
T Consensus 394 -~tqeeLF~--l~N~l~e~gk~I---IITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 -STQEEFFH--TFNTLHNANKQI---VLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred -HHHHHHHH--HHHHHHhcCCCE---EEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 11111111 112222222222 33443333 34789999999 678999999999999999977554
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.7e-10 Score=96.06 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=38.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++||++.++.+..+...+..+..+++.++|+||||+|||++++.+|+.++..
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 5788888866555544333333344569999999999999999999988743
No 173
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.11 E-value=1.8e-10 Score=89.74 Aligned_cols=45 Identities=29% Similarity=0.432 Sum_probs=35.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
||||++++.+|.. ...+... .++||.||+|||||++|+.+++.+.
T Consensus 19 ivGq~~~k~al~~---~~~~p~~--~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 19 IVGQEEMKLALIL---NVIDPKI--GGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HhChHHHHHHHHH---hccCCCC--CeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999955543 3344443 4899999999999999999988773
No 174
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=3e-10 Score=91.55 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=73.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhh-----hhhhh--ccCcEEEEEEeccCCCCCCc
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTE-----EETEM--IEGEVVEIQIERPATGLGSK 97 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~i~~~~id~~~~~~~~~ 97 (174)
++++||||+|+|||+|++++++++.. .....+++...+......... .-... ..+.+++++++.+ .+.. .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l-~~k~-~ 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVF-SGKG-A 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhh-cCCh-h
Confidence 57999999999999999999998732 123344444333221111111 00111 1234555566554 2210 1
Q ss_pred cceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcce---eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 98 VGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
.+...|. .+....+....+ +.++...+ ..+.+.++||| .++.+.+|+.+++..+|++.....
T Consensus 220 ~qeelf~--l~N~l~~~~k~I---Ilts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 220 TQEEFFH--TFNSLHTEGKLI---VISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred hHHHHHH--HHHHHHHCCCcE---EEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 1111111 011111112222 34443444 34679999999 689999999999999999876543
No 175
>PRK09087 hypothetical protein; Validated
Probab=99.09 E-value=2.7e-10 Score=84.18 Aligned_cols=119 Identities=19% Similarity=0.204 Sum_probs=69.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccCcEEEEEEeccCCCCCCccceeEEEe
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~ 105 (174)
..++|+||+|+||||+++++++..+. . .++...+..... ..+..+.++++++|.. ... +.. .|.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~--~--~i~~~~~~~~~~------~~~~~~~l~iDDi~~~-~~~--~~~--lf~- 108 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDA--L--LIHPNEIGSDAA------NAAAEGPVLIEDIDAG-GFD--ETG--LFH- 108 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCC--E--EecHHHcchHHH------HhhhcCeEEEECCCCC-CCC--HHH--HHH-
Confidence 46999999999999999999987642 2 223222111000 1122245666666644 221 111 110
Q ss_pred ccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 106 TEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 106 ~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
-.....+....++ + +++..+. ...+.++||| .++++.+++.+++.+++++....+
T Consensus 109 -l~n~~~~~g~~il--i-ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 109 -LINSVRQAGTSLL--M-TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred -HHHHHHhCCCeEE--E-ECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 1111122222232 3 3323332 2479999999 899999999999999999987654
No 176
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.9e-10 Score=86.97 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh------hhh--
Q psy14616 3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM------NKT-- 71 (174)
Q Consensus 3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~------~~~-- 71 (174)
+.|.-+..+..+..-+-.|..| .+++++||||||||.+++.+++++-.. ..++++||-..-+.+- .++
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~ 99 (366)
T COG1474 21 HREEEINQLASFLAPALRGERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGK 99 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC
Confidence 3344444444433333334444 579999999999999999999988322 2256666543322110 000
Q ss_pred -h------hh--h---hhc--cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc---ccccchhhhcccCC--C
Q psy14616 72 -E------EE--T---EMI--EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL---GAKMIEAIGTAYSS--P 129 (174)
Q Consensus 72 -~------~~--~---~~~--~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~--~ 129 (174)
. .+ . +.. .+ .++++|+|.+....+ . -+...... ...-+..++.+++. .
T Consensus 100 ~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----~------~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 100 VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----E------VLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----h------HHHHHHhhccccceeEEEEEEeccHHHH
Confidence 0 00 0 000 12 345557777644421 0 00111111 11111114444222 2
Q ss_pred CCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhch
Q psy14616 130 HGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 130 ~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
..+++-+.||+ ..|.|+||+.+|+.+||..+...
T Consensus 170 ~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 170 DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 55889999999 56889999999999999997753
No 177
>PRK04132 replication factor C small subunit; Provisional
Probab=99.07 E-value=1.4e-10 Score=98.97 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=83.3
Q ss_pred CceEEEEc--CCCCcHHHHHHHHHHHhC---CCCCeeeecccccchhh-hhhhhhh-hhhc--c----CcEEEEEEeccC
Q psy14616 25 GRAILLAG--QPGTGKTAIAMGLAQALG---PDTPFTSMAGSEIYSLE-MNKTEEE-TEMI--E----GEVVEIQIERPA 91 (174)
Q Consensus 25 ~~~~ll~G--ppG~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~--~----~~i~~~~id~~~ 91 (174)
+-+.+..| |++.||||+|+++|+.+. ....+..+++++..+.+ +...... +... . ..++++|+|.+
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L- 642 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL- 642 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC-
Confidence 44666778 999999999999999982 23468899988754332 2222211 1111 1 24666788887
Q ss_pred CCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 92 TGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+. +.|+..++ +... .++.| |.++ |++..+.++++|||+++.|.+++.+++.+.|+....+
T Consensus 643 t~---~AQnALLk------~lEep~~~~~F--ILi~-N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 643 TQ---DAQQALRR------TMEMFSSNVRF--ILSC-NYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred CH---HHHHHHHH------HhhCCCCCeEE--EEEe-CChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHh
Confidence 33 22332222 1122 23334 4444 7889999999999999999999999999988876543
No 178
>KOG0990|consensus
Probab=99.05 E-value=4.4e-11 Score=90.43 Aligned_cols=146 Identities=13% Similarity=0.083 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----eeecccccchhhhhhhh--hh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----TSMAGSEIYSLEMNKTE--EE 74 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~ 74 (174)
+++|+++. ..+.+....++.| |.|||||||||||+...+.|+.+.+...+ ..++.++.-+.+..... +.
T Consensus 43 v~~~~ei~---st~~~~~~~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~f 117 (360)
T KOG0990|consen 43 VIKQEPIW---STENRYSGMPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLF 117 (360)
T ss_pred HhcCCchh---hHHHHhccCCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHH
Confidence 46777777 4444455666666 99999999999999999999998653222 12333333222221111 11
Q ss_pred h-----hhcc-----CcEEEEEEeccCCCCCCccce-eEEEeccchhhhcc-ccccchhhhcccCCCCCCCHHhhcceee
Q psy14616 75 T-----EMIE-----GEVVEIQIERPATGLGSKVGK-LTMKTTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLLDRMVI 142 (174)
Q Consensus 75 ~-----~~~~-----~~i~~~~id~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~ 142 (174)
+ .++. ..++.+|.|.+... .|+ +. + ..... .+.. ||+-.|.+..+.|++++||..
T Consensus 118 ast~~~~~fst~~~fKlvILDEADaMT~~----AQnALR-R-----viek~t~n~r---F~ii~n~~~ki~pa~qsRctr 184 (360)
T KOG0990|consen 118 ASTQQPTTYSTHAAFKLVILDEADAMTRD----AQNALR-R-----VIEKYTANTR---FATISNPPQKIHPAQQSRCTR 184 (360)
T ss_pred HhhccceeccccCceeEEEecchhHhhHH----HHHHHH-H-----HHHHhccceE---EEEeccChhhcCchhhccccc
Confidence 1 1121 23555566655222 121 11 0 00111 1222 445558889999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhchh
Q psy14616 143 IPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 143 i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++|.+++..+....+......+
T Consensus 185 frf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 185 FRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred CCCCCCChhhhhhHHHHHHhcc
Confidence 9999999888877777765443
No 179
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.04 E-value=5.3e-10 Score=76.04 Aligned_cols=56 Identities=39% Similarity=0.555 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccc
Q psy14616 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSE 62 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~ 62 (174)
+|++.....+.... ... .+++++++||||+|||++++.+++.+. ....+..++...
T Consensus 1 ~~~~~~~~~i~~~~---~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 1 VGQEEAIEALREAL---ELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CchHHHHHHHHHHH---hCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 36666665544443 322 346899999999999999999999882 113344444443
No 180
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.04 E-value=3.1e-10 Score=81.81 Aligned_cols=42 Identities=48% Similarity=0.748 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|+||+.+|+++..... | ++|+||+||||||||++|+.+...|
T Consensus 5 I~GQe~aKrAL~iAAa----G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAA----G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp SSSTHHHHHHHHHHHH----C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hcCcHHHHHHHHHHHc----C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 7999999988887663 2 4799999999999999999999776
No 181
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.03 E-value=2.4e-09 Score=87.97 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=35.0
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcC----------CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIA----------GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~----------~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
|+|++.++.++.... -+|..+ .-|+||+|+||||||++|+.+++...+
T Consensus 205 i~G~~~~k~~l~l~l---~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r 262 (509)
T smart00350 205 IYGHEDIKKAILLLL---FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR 262 (509)
T ss_pred ccCcHHHHHHHHHHH---hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc
Confidence 579999885554333 333211 138999999999999999999998754
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.03 E-value=2.8e-09 Score=89.62 Aligned_cols=44 Identities=34% Similarity=0.462 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
||||++++.++.... .++.. .++||.||||||||++|++++..+
T Consensus 6 ivGq~~~~~al~~~a---v~~~~--g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 6 IVGQEDLKLALLLNA---VDPRI--GGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred hcChHHHHHHHHHHh---hCCCC--CeEEEEcCCCCcHHHHHHHHHHhC
Confidence 799999996664433 34433 479999999999999999999988
No 183
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.98 E-value=9.2e-10 Score=85.64 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
||||++++.++.... -+.. ..++++.|+||+|||+++++++..+
T Consensus 6 ivgq~~~~~al~~~~---~~~~--~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 6 IVGQDEMKLALLLNV---IDPK--IGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccHHHHHHHHHHHh---cCCC--CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 699999996654322 2222 3589999999999999999999876
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.96 E-value=3.7e-09 Score=83.56 Aligned_cols=128 Identities=18% Similarity=0.268 Sum_probs=74.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecccccchhhhhhhhhh-----hhhcc-CcEEEEEEeccCCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAGSEIYSLEMNKTEEE-----TEMIE-GEVVEIQIERPATGL 94 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~i~~~~id~~~~~~ 94 (174)
+...++||||+|.|||+|+++++... +.+..+..++...+....+....+. .+.+. ..+++++++.+ .+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l-~g- 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFL-AG- 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHh-cC-
Confidence 44689999999999999999999876 4334466666665554444333321 12221 12333344333 22
Q ss_pred CCccceeEEEeccchhhhccccccc----hhhhcccCCCCC---CCHHhhcce---eeEecCCCCHHHHHHHHHHHhc
Q psy14616 95 GSKVGKLTMKTTEMETSYDLGAKMI----EAIGTAYSSPHG---IPIDLLDRM---VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~---l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~ 162 (174)
+....+.+++.-|.+. .++.|+...|.. +.|.|+||| .++.+.+|+.+.+..||++...
T Consensus 190 ---------k~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 ---------KERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred ---------ChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 1111122222211111 113344344544 569999999 6799999999999999999543
No 185
>KOG0736|consensus
Probab=98.90 E-value=2.6e-09 Score=88.99 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=86.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhhhhccCcEEEE-EEeccC-CCCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EETEMIEGEVVEI-QIERPA-TGLGS 96 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~-~id~~~-~~~~~ 96 (174)
..+||+|+||||||++++++|.++| .++..+++.++.+..-+..+ ..+...+..++++ .+|-+. +.++.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg--~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg 509 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELG--LHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG 509 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhC--CceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc
Confidence 4789999999999999999999999 55777777665542222222 2223334444433 444331 11110
Q ss_pred ccce----eEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhchhhhh
Q psy14616 97 KVGK----LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVKNERN 167 (174)
Q Consensus 97 ~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~~~~~ 167 (174)
+... +..........++.++.++ ++++ +..+.+++.+++-| ..|.++.+++++..+||+-++......
T Consensus 510 ed~rl~~~i~~~ls~e~~~~~~~~~iv--v~t~-~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 510 EDARLLKVIRHLLSNEDFKFSCPPVIV--VATT-SSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN 582 (953)
T ss_pred hhHHHHHHHHHHHhcccccCCCCceEE--EEec-cccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 0000 0000011122334455666 6666 67889999999999 889999999999999999988665544
No 186
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.89 E-value=8.8e-09 Score=68.55 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=35.0
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCce--EEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRA--ILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~--~ll~GppG~GKT~la~~la~~l 49 (174)
++||.-|++.+.......-....|.++ +-|+||||||||.+++.+|+.+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 589999986655433333233334344 4489999999999999999987
No 187
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=3.5e-09 Score=78.97 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++|.+||+||+|+||..+|.++|+.+.|.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~ 34 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCT 34 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999765
No 188
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.83 E-value=8.6e-09 Score=80.28 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc-CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI-AGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~-~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++|+++++..+-........|.. ..+.++|+||||+||||+|++||+.++.
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58999998776655544444433 3467889999999999999999999854
No 189
>KOG1051|consensus
Probab=98.83 E-value=2.3e-08 Score=85.42 Aligned_cols=62 Identities=29% Similarity=0.404 Sum_probs=49.0
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcC---CceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccc
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIA---GRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSE 62 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~---~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~ 62 (174)
|+||+++..++......-+.|... .--++|.||.|||||.+|+++|..+ |.+..++.++.+.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse 629 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE 629 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh
Confidence 689999999988888777765543 3467899999999999999999987 5445566666554
No 190
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.9e-09 Score=84.73 Aligned_cols=42 Identities=45% Similarity=0.654 Sum_probs=36.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|+||+.+|++++... ..+||+||+||||||||++|+.+...|
T Consensus 181 V~GQ~~AKrAleiAA-------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 181 VKGQEQAKRALEIAA-------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred hcCcHHHHHHHHHHH-------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 689999998888776 246899999999999999999887655
No 191
>PHA00729 NTP-binding motif containing protein
Probab=98.80 E-value=4.5e-08 Score=71.81 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=27.5
Q ss_pred CCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616 130 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 130 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
..+.++++||+..+.+.+++++++.+.++.+
T Consensus 109 f~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 109 YKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred HHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 3478899999999999999999999999884
No 192
>KOG1969|consensus
Probab=98.78 E-value=4.3e-08 Score=81.51 Aligned_cols=134 Identities=19% Similarity=0.142 Sum_probs=75.6
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh----------hhhhhccCcEEEEEEecc
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE----------EETEMIEGEVVEIQIERP 90 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~~id~~ 90 (174)
++.+.+-+||+||||.||||||+.+|+..| +..+.+|+++--+..+-... ..++..|--++++|||..
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG--YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG--YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcC--ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 333446788999999999999999999999 44678888765543332211 112344667888899865
Q ss_pred CCCC--------------CCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHH
Q psy14616 91 ATGL--------------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 156 (174)
Q Consensus 91 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 156 (174)
.... ....+.-.-. ........+-..-+ ||-.+|.+..-...|+--++++.|.++++.-+.+-
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~-~rkkkr~~~L~RPI--ICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDK-KRKKKRSKLLTRPI--ICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchh-hhhhhccccccCCE--EEEecCccchhhhhcccceEEEEecCCChhHHHHH
Confidence 2110 0000000000 00000011111112 44443333334555667779999999998887766
Q ss_pred HHH
Q psy14616 157 LKI 159 (174)
Q Consensus 157 l~~ 159 (174)
|+-
T Consensus 477 L~~ 479 (877)
T KOG1969|consen 477 LNE 479 (877)
T ss_pred HHH
Confidence 654
No 193
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.78 E-value=1.1e-08 Score=72.53 Aligned_cols=98 Identities=24% Similarity=0.281 Sum_probs=59.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CCCCeeeecccccch----hh-----hhhhhhhhhh-ccCcEEEEEEeccCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG--PDTPFTSMAGSEIYS----LE-----MNKTEEETEM-IEGEVVEIQIERPAT 92 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~--~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~-~~~~i~~~~id~~~~ 92 (174)
..+++|.||+|||||.+|+++|+.+. ...+++.++++.+.. .. .+........ -.+.|+++|||++..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 35899999999999999999999997 234677777766544 11 0000001111 135788899999844
Q ss_pred CC--C-C----cccee--------EEEeccchhhhccccccchhhhcc
Q psy14616 93 GL--G-S----KVGKL--------TMKTTEMETSYDLGAKMIEAIGTA 125 (174)
Q Consensus 93 ~~--~-~----~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~ 125 (174)
.. . + ..++. .+.+.. ....+..+.+| |+|+
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~g~~~d~~-g~~vd~~n~if--I~Ts 127 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEGGTLTDSY-GRTVDTSNIIF--IMTS 127 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHHSEEEETT-CCEEEGTTEEE--EEEE
T ss_pred cccccchhhHHHHHHHHHHHhcccceeccc-ceEEEeCCceE--EEec
Confidence 11 0 0 11111 233222 35677788888 7777
No 194
>KOG0735|consensus
Probab=98.75 E-value=3.1e-08 Score=82.16 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=86.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC--CCeeeecccccchhhhhhhh-------hhh-hhccCcEEEEEEeccCCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD--TPFTSMAGSEIYSLEMNKTE-------EET-EMIEGEVVEIQIERPATGL 94 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~i~~~~id~~~~~~ 94 (174)
..+++|+||+|+|||.|++++++++-.+ ..+..++|+.+...-...++ .++ ...|..|+.+++|.+++..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 4699999999999999999999988543 22344555555433333332 112 3347788889999885533
Q ss_pred CCccceeEEEec-------cchhhhccccccchhhhcccCCCCCCCHHhhc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 95 GSKVGKLTMKTT-------EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 95 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+.+.+...+... .+...+.-.+..+..|++. +....++|.|.| +| .++.+++|...+..+||+....++
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~-qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG-QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec-hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 222222211111 1111111122222225555 666778888774 45 578899999999999999877666
Q ss_pred h
Q psy14616 165 E 165 (174)
Q Consensus 165 ~ 165 (174)
.
T Consensus 590 ~ 590 (952)
T KOG0735|consen 590 L 590 (952)
T ss_pred h
Confidence 5
No 195
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.74 E-value=1.4e-07 Score=69.23 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=87.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhhc-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEMI- 78 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (174)
++|.+..++++-.-.....+|... .|+||+|.-||||+++++++-.+.+.. ..++.++-.++... .+..+..
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pA-NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L-----p~l~~~Lr 135 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPA-NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL-----PDLVELLR 135 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCcc-cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-----HHHHHHHh
Confidence 578888888877666666667755 899999999999999999998887433 23555555544321 1112221
Q ss_pred -cCcEEEEEEecc-CCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC--------------CC--------
Q psy14616 79 -EGEVVEIQIERP-ATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG--------------IP-------- 133 (174)
Q Consensus 79 -~~~i~~~~id~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~--------------l~-------- 133 (174)
.+.-++++.|.+ |... +..--.++..-....... .|++| .||+ |+..- +.
T Consensus 136 ~~~~kFIlFcDDLSFe~g--d~~yK~LKs~LeG~ve~rP~NVl~--YATS-NRRHLl~e~~~dn~~~~~eih~~eaveEK 210 (287)
T COG2607 136 ARPEKFILFCDDLSFEEG--DDAYKALKSALEGGVEGRPANVLF--YATS-NRRHLLPEDMKDNEGSTGEIHPSEAVEEK 210 (287)
T ss_pred cCCceEEEEecCCCCCCC--chHHHHHHHHhcCCcccCCCeEEE--EEec-CCcccccHhhhhCCCcccccChhHHHHHh
Confidence 234455666665 2221 111001110000001111 22333 4444 33321 21
Q ss_pred HHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 134 IDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 134 ~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
-.+-+|| .-+.|.+.++++-.+++..+..+
T Consensus 211 lSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 211 LSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred hchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 2355899 67889999999999999997744
No 196
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.73 E-value=4.2e-08 Score=80.17 Aligned_cols=42 Identities=40% Similarity=0.631 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|+||+.+++.+.... ..+++++|.||||+|||++++.++..+
T Consensus 194 v~Gq~~~~~al~~aa-------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 194 IKGQQHAKRALEIAA-------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred hcCcHHHHhhhhhhc-------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 578999987666544 245799999999999999999999755
No 197
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.71 E-value=2e-08 Score=78.22 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhhh--hh---
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKTE--EE--- 74 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~--~~--- 74 (174)
+||+..+.+.+......+.. ...++|++|++||||+++|+++-.... ...+|+.++|+.+........- ..
T Consensus 1 liG~S~~m~~~~~~~~~~a~---~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP---LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGA 77 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcccccc
Confidence 57777666554443333322 246899999999999999999987664 3468999998765332111100 00
Q ss_pred -----------hhhc-cCcEEEEEEeccCCCCCCccce--eEEE-eccchhhh--ccccccchhhhcccCCC------CC
Q psy14616 75 -----------TEMI-EGEVVEIQIERPATGLGSKVGK--LTMK-TTEMETSY--DLGAKMIEAIGTAYSSP------HG 131 (174)
Q Consensus 75 -----------~~~~-~~~i~~~~id~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~~~~~~~i~~~~~~~------~~ 131 (174)
-+.. .|-++++++|.+ +. +.|. +.+. +....... ...+.-+..|++++.+. ..
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L-~~---~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~ 153 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATA-SL---LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGR 153 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhC-CH---HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCc
Confidence 0111 234566677766 22 1111 1100 00000000 00011122255553332 34
Q ss_pred CCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616 132 IPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK 163 (174)
Q Consensus 132 l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~ 163 (174)
+.+.|..|+ ..|.++++. .+|+..+++..+..
T Consensus 154 fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~ 189 (329)
T TIGR02974 154 FRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIR 189 (329)
T ss_pred hHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHH
Confidence 678999999 568899998 67888888776644
No 198
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.70 E-value=3.2e-08 Score=81.93 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=85.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh--------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT-------- 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-------- 71 (174)
+||+..+.+.+......+. ....+++|+|++|||||++|+++.+... ...+|+.++|..+........
T Consensus 198 liG~s~~~~~~~~~~~~~a---~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~ 274 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVA---RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGA 274 (534)
T ss_pred eEECCHHHHHHHHHHHHHh---CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCc
Confidence 4676666644443333222 2346899999999999999999998764 346899999876533211110
Q ss_pred -h----hhh---hh-ccCcEEEEEEeccCCCCCCcccee--EEE-eccchhhhc--cccccchhhhcccCCC------CC
Q psy14616 72 -E----EET---EM-IEGEVVEIQIERPATGLGSKVGKL--TMK-TTEMETSYD--LGAKMIEAIGTAYSSP------HG 131 (174)
Q Consensus 72 -~----~~~---~~-~~~~i~~~~id~~~~~~~~~~~~~--~~~-~~~~~~~~~--~~~~~~~~i~~~~~~~------~~ 131 (174)
. ... +. ..|-++++++|.+ +. +.|.. .+. +......-. ..+.-+..|++++.+. ..
T Consensus 275 ~~~~~~~~~g~~~~a~~GtL~ldei~~L-~~---~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~ 350 (534)
T TIGR01817 275 FTGAIAQRKGRFELADGGTLFLDEIGEI-SP---AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGE 350 (534)
T ss_pred cCCCCcCCCCcccccCCCeEEEechhhC-CH---HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCC
Confidence 0 000 11 1345666777776 32 11211 000 000000000 0001112255553322 34
Q ss_pred CCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616 132 IPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK 163 (174)
Q Consensus 132 l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~ 163 (174)
+.+.|..|+ ..|.++++. .+++..+++..+..
T Consensus 351 f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~ 386 (534)
T TIGR01817 351 FRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEK 386 (534)
T ss_pred CCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHH
Confidence 778899998 467888887 67888888777654
No 199
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.69 E-value=5.9e-08 Score=76.34 Aligned_cols=45 Identities=36% Similarity=0.482 Sum_probs=34.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++|||.++.+|..- + .+... .++|+.|+.||||||++|+||..|.
T Consensus 19 ivGqd~lk~aL~l~--a-v~P~i--ggvLI~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 19 IVGQDPLKLALGLN--A-VDPQI--GGALIAGEKGTAKSTLARALADLLP 63 (423)
T ss_pred hcCchHHHHHHhhh--h-ccccc--ceeEEecCCCccHHHHHHHHHHhCC
Confidence 58999999665543 2 22222 4899999999999999999999883
No 200
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.67 E-value=1.8e-07 Score=80.22 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~ 50 (174)
|+||.|+||||||.+|+.+++...
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lsp 517 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSP 517 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCC
Confidence 999999999999999999998654
No 201
>KOG2227|consensus
Probab=98.66 E-value=1.7e-07 Score=74.49 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC---eeeeccccc------chhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP---FTSMAGSEI------YSLEMNKT 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~---~~~~~~~~~------~~~~~~~~ 71 (174)
++|.|.-.+.+..|...--.++.+ ..+.++|.||||||.+.+.+-..+.+... -+++++.++ +..-.+.+
T Consensus 152 l~gRe~e~~~v~~F~~~hle~~t~-gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLELNTS-GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred ccchHHHHHHHHHHHHhhhhcccC-cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence 356666665555555444444433 68889999999999998877766644322 255665431 11111111
Q ss_pred h--------h--hhhh---------ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616 72 E--------E--ETEM---------IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI 132 (174)
Q Consensus 72 ~--------~--~~~~---------~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 132 (174)
. + -.+. ..=.++.+|+|.+... .++.+.- .++....-....+...+|-+-+....+
T Consensus 231 ~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr---~~~vLy~--lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 231 LQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR---SQTVLYT--LFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc---ccceeee--ehhcccCCcceeeeeeehhhhhHHHHH
Confidence 0 0 0000 1113455577766433 2333222 222222223334443344444444667
Q ss_pred CHHhhcce----eeEecCCCCHHHHHHHHHHHhchhhh
Q psy14616 133 PIDLLDRM----VIIPTQPYQDEEIQAILKIRLVKNER 166 (174)
Q Consensus 133 ~~~l~sR~----~~i~~~~~~~~e~~~il~~~l~~~~~ 166 (174)
.|.|..|+ +++.|+||+.+++.+|++.++.....
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t 343 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST 343 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc
Confidence 88888876 78999999999999999999866543
No 202
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.64 E-value=6.3e-08 Score=75.41 Aligned_cols=155 Identities=19% Similarity=0.244 Sum_probs=82.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhh--hh---
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTE--EE--- 74 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~--~~--- 74 (174)
+||.....+.+......+. ....+++++|++||||+++|+++-....+ ..+|+.++|..+....+...- ..
T Consensus 8 liG~S~~~~~~~~~i~~~a---~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~ 84 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLA---PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84 (326)
T ss_pred cEECCHHHHHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccc
Confidence 4666655544333332222 22468999999999999999999876542 367899998865321111100 00
Q ss_pred --------h---hhc-cCcEEEEEEeccCCCCCCccce-e-EEE-eccch---hhhccccccchhhhcccCCC------C
Q psy14616 75 --------T---EMI-EGEVVEIQIERPATGLGSKVGK-L-TMK-TTEME---TSYDLGAKMIEAIGTAYSSP------H 130 (174)
Q Consensus 75 --------~---~~~-~~~i~~~~id~~~~~~~~~~~~-~-~~~-~~~~~---~~~~~~~~~~~~i~~~~~~~------~ 130 (174)
. +.. .|-++++++|.+ +. ..|. + .+. +.... ..... +.-+..|++++.+. .
T Consensus 85 ~~g~~~~~~g~l~~a~gGtL~l~~i~~L-~~---~~Q~~L~~~l~~~~~~~~g~~~~~-~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 85 FTGAQKRHPGRFERADGGTLFLDELATA-PM---LVQEKLLRVIEYGELERVGGSQPL-QVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred cCCcccccCCchhccCCCeEEeCChhhC-CH---HHHHHHHHHHhcCcEEeCCCCcee-eccEEEEEeCchhHHHHHHcC
Confidence 0 011 233455566655 22 1111 0 100 00000 00000 01112255553332 4
Q ss_pred CCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616 131 GIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK 163 (174)
Q Consensus 131 ~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~ 163 (174)
.+.+.|..|+ ..|.++++. .+|+..++..++..
T Consensus 160 ~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~ 196 (326)
T PRK11608 160 KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQ 196 (326)
T ss_pred CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHH
Confidence 5778999999 578899997 57888888776644
No 203
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.58 E-value=1.1e-07 Score=78.07 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=38.6
Q ss_pred CCchHHHHHHHHH-HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 1 MVGQLQARRAAGV-VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 1 iiG~~~~~~~l~~-~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++|+++++..+-. +..++.......+.++|.||||+|||++|+.||+.+.
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 4799999977554 4344455444557888999999999999999999873
No 204
>PRK12377 putative replication protein; Provisional
Probab=98.58 E-value=1.6e-07 Score=70.21 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
|+..+...+..+......+ ..+++|+||||||||++|.++|+.+.
T Consensus 82 ~~~~a~~~a~~~a~~~~~~---~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 82 GQRYALSQAKSIADELMTG---CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred hHHHHHHHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444554444444433332 35899999999999999999999883
No 205
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.56 E-value=5.9e-07 Score=75.06 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=69.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhhhhcc--------CcEEEEEEecc
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EETEMIE--------GEVVEIQIERP 90 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------~~i~~~~id~~ 90 (174)
.++||.|+||||||++|+++++.++...+|+.+.....-..-.+... ......+ |.++++|++++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 49999999999999999999999876656776653211111111110 0001112 34555566665
Q ss_pred CCCCCC------ccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce-eeEecCC-CCHHHHHHHHHH
Q psy14616 91 ATGLGS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM-VIIPTQP-YQDEEIQAILKI 159 (174)
Q Consensus 91 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~-~~i~~~~-~~~~e~~~il~~ 159 (174)
...... +.+.+.+... ...... +.-|..|+|+ |... .+++++++|| ..+.+.. ++.++..+|+++
T Consensus 97 ~~~~q~~Ll~al~~g~v~i~r~--G~~~~~-p~~f~lIAt~-np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~ 172 (589)
T TIGR02031 97 DDGLSNRLLQALDEGVVIVERE--GISVVH-PAKFALIATY-DPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRR 172 (589)
T ss_pred CHHHHHHHHHHHHcCCeEEEEC--CCceee-cCceEEEEec-CCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHH
Confidence 221100 1111111100 011111 1223336655 5543 6999999999 4455544 356667788777
Q ss_pred Hh
Q psy14616 160 RL 161 (174)
Q Consensus 160 ~l 161 (174)
.+
T Consensus 173 ~~ 174 (589)
T TIGR02031 173 ER 174 (589)
T ss_pred HH
Confidence 54
No 206
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.56 E-value=2.2e-07 Score=76.51 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=84.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh--------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT-------- 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-------- 71 (174)
+||+....+.+......+.. ...+++++|++||||+++|+++.+... ...+|+.++|..+....+...
T Consensus 189 iig~s~~~~~~~~~i~~~a~---~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~ 265 (509)
T PRK05022 189 MIGQSPAMQQLKKEIEVVAA---SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGA 265 (509)
T ss_pred eeecCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccc
Confidence 46776666444443333322 346999999999999999999998765 335788999876643111100
Q ss_pred -----hhh---hhhc-cCcEEEEEEeccCCCCCCccce-e-EE-Eeccchhhhc--cccccchhhhcccCCC------CC
Q psy14616 72 -----EEE---TEMI-EGEVVEIQIERPATGLGSKVGK-L-TM-KTTEMETSYD--LGAKMIEAIGTAYSSP------HG 131 (174)
Q Consensus 72 -----~~~---~~~~-~~~i~~~~id~~~~~~~~~~~~-~-~~-~~~~~~~~~~--~~~~~~~~i~~~~~~~------~~ 131 (174)
.+. -+.. .|-+++++||.+ +. +.|. + .+ .+......-+ ..+.-+..|++++.+. ..
T Consensus 266 ~~ga~~~~~g~~~~a~gGtL~ldeI~~L-~~---~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 266 FTGAISNRSGKFELADGGTLFLDEIGEL-PL---ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cCCCcccCCcchhhcCCCEEEecChhhC-CH---HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 000 0111 234566677776 22 1221 1 10 0100000000 0001122255553322 34
Q ss_pred CCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616 132 IPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK 163 (174)
Q Consensus 132 l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~ 163 (174)
+.+.|..|+ ..|++|++. .+|+..+++..+.+
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~ 377 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQ 377 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHH
Confidence 788898998 458888887 56777777766644
No 207
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.55 E-value=2.7e-07 Score=78.61 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=82.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh--------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT-------- 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-------- 71 (174)
++|+..+.+.+..-...+.. ...+++++|++|||||++|+++..... ...+++.++|..+........
T Consensus 378 liG~S~~~~~~~~~~~~~a~---~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~ 454 (686)
T PRK15429 378 IIGRSEAMYSVLKQVEMVAQ---SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454 (686)
T ss_pred eeecCHHHHHHHHHHHHHhC---CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccccc
Confidence 46666665444333332222 235899999999999999999988764 335788888876532111000
Q ss_pred -----hhhh---hh-ccCcEEEEEEeccCCCCCCccce-e-EEE-eccchhhh--ccccccchhhhcccCCC------CC
Q psy14616 72 -----EEET---EM-IEGEVVEIQIERPATGLGSKVGK-L-TMK-TTEMETSY--DLGAKMIEAIGTAYSSP------HG 131 (174)
Q Consensus 72 -----~~~~---~~-~~~~i~~~~id~~~~~~~~~~~~-~-~~~-~~~~~~~~--~~~~~~~~~i~~~~~~~------~~ 131 (174)
.... +. ..|-++++++|.+ +. +.|. + .+. +......- ...+.-++.|++++.+. ..
T Consensus 455 ~~g~~~~~~g~le~a~~GtL~Ldei~~L-~~---~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 530 (686)
T PRK15429 455 FTGASAQRIGRFELADKSSLFLDEVGDM-PL---ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 530 (686)
T ss_pred ccccccchhhHHHhcCCCeEEEechhhC-CH---HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCc
Confidence 0000 11 1344666777776 22 1111 1 100 00000000 00011112255553322 33
Q ss_pred CCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616 132 IPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK 163 (174)
Q Consensus 132 l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~ 163 (174)
+.+.+..|+ ..|.+||+. .+|+..+++.++.+
T Consensus 531 f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~ 566 (686)
T PRK15429 531 FRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFK 566 (686)
T ss_pred ccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHH
Confidence 667788887 568888887 57787777776644
No 208
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.54 E-value=1.4e-06 Score=66.18 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=67.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCC-eeeecccccch-hhhhhhhhhh-hh--------ccCcEEEEEEeccCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTP-FTSMAGSEIYS-LEMNKTEEET-EM--------IEGEVVEIQIERPATG 93 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~--------~~~~i~~~~id~~~~~ 93 (174)
++++||+||+|||||.+++..-+.+..+.. ...++.+..-. ..+...-+.. +. ..++-...++|.+..+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 469999999999999999988777754321 12233222111 1111111110 11 1345566788877222
Q ss_pred CCCc--cce-e-----------EEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcceeeEecCCCCHHHHHHH
Q psy14616 94 LGSK--VGK-L-----------TMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQAI 156 (174)
Q Consensus 94 ~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~~~i~~~~~~~~e~~~i 156 (174)
..+. .+. + ++. ........+.+..+ +|+ +++. ..+++.+++.|.++.++.++++.+..|
T Consensus 113 ~~d~ygtq~~iElLRQ~i~~~g~yd-~~~~~~~~i~~i~~--vaa-~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~I 188 (272)
T PF12775_consen 113 QPDKYGTQPPIELLRQLIDYGGFYD-RKKLEWKSIEDIQF--VAA-MNPTGGRNPISPRFLRHFNILNIPYPSDESLNTI 188 (272)
T ss_dssp ---TTS--HHHHHHHHHHHCSEEEC-TTTTEEEEECSEEE--EEE-ESSTTT--SHHHHHHTTEEEEE----TCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHhcCccc-CCCcEEEEEeeeEE--EEe-cCCCCCCCCCChHHhhheEEEEecCCChHHHHHH
Confidence 1111 110 1 111 10011122233333 444 3544 237889999999999999999999988
Q ss_pred HHHHhc
Q psy14616 157 LKIRLV 162 (174)
Q Consensus 157 l~~~l~ 162 (174)
....+.
T Consensus 189 f~~il~ 194 (272)
T PF12775_consen 189 FSSILQ 194 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887664
No 209
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.54 E-value=1e-07 Score=75.34 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=73.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--CCCeeeecccccchhhhhh-------------hhhhhhh---ccC-cEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP--DTPFTSMAGSEIYSLEMNK-------------TEEETEM---IEG-EVVEI 85 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~-~i~~~ 85 (174)
+.++|+.|++||||+.+|+.+...-.+ ..||+.+||+.+...-... ..+...+ ..| -++.+
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLD 180 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLD 180 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehh
Confidence 579999999999999999999854433 5789999998765421110 0011111 122 34444
Q ss_pred EEeccCCCCCCccce--eEEEec-cchhhhc--cccccchhhhcccCC-CCCCCH--Hhhcce--eeEecCCCC--HHHH
Q psy14616 86 QIERPATGLGSKVGK--LTMKTT-EMETSYD--LGAKMIEAIGTAYSS-PHGIPI--DLLDRM--VIIPTQPYQ--DEEI 153 (174)
Q Consensus 86 ~id~~~~~~~~~~~~--~~~~~~-~~~~~~~--~~~~~~~~i~~~~~~-~~~l~~--~l~sR~--~~i~~~~~~--~~e~ 153 (174)
||.++ +. +.|. +.+.+. .....-+ -...-+..+++++.+ ...+.. ++..|+ ..|++|++. .+|+
T Consensus 181 EI~~L-P~---~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di 256 (403)
T COG1221 181 EIHRL-PP---EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDI 256 (403)
T ss_pred hhhhC-CH---hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhH
Confidence 66555 22 2222 111111 0010111 011112224444333 355666 788866 678899887 5666
Q ss_pred HHHHHHHhchh
Q psy14616 154 QAILKIRLVKN 164 (174)
Q Consensus 154 ~~il~~~l~~~ 164 (174)
..+++..+...
T Consensus 257 ~~L~e~Fl~~~ 267 (403)
T COG1221 257 LLLAEHFLKSE 267 (403)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 210
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.53 E-value=2.4e-07 Score=77.63 Aligned_cols=45 Identities=33% Similarity=0.550 Sum_probs=37.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++||+++++.+.... .++ ++++|+||||||||++++++|+.+++.
T Consensus 20 viG~~~a~~~l~~a~---~~~----~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 20 VIGQEEAVEIIKKAA---KQK----RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred ccCHHHHHHHHHHHH---HcC----CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 689999996555444 443 499999999999999999999999765
No 211
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.51 E-value=2.6e-07 Score=76.16 Aligned_cols=156 Identities=16% Similarity=0.200 Sum_probs=83.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH--------h-CCCCCeeeecccccchhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA--------L-GPDTPFTSMAGSEIYSLEMNKT 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~--------l-~~~~~~~~~~~~~~~~~~~~~~ 71 (174)
++|+..+.+.+......... ...++|++|++||||+++|+++-+. . ....+|+.++|+.+........
T Consensus 221 iiG~S~~m~~~~~~i~~~A~---s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~llese 297 (538)
T PRK15424 221 LLGQSPQMEQVRQTILLYAR---SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAE 297 (538)
T ss_pred eeeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHH
Confidence 46766666444433322222 2469999999999999999999876 2 3446899999886543111110
Q ss_pred ---------hh-----hh---hhc-cCcEEEEEEeccCCCCCCccce--eEEE-eccchhhhc--cccccchhhhcccCC
Q psy14616 72 ---------EE-----ET---EMI-EGEVVEIQIERPATGLGSKVGK--LTMK-TTEMETSYD--LGAKMIEAIGTAYSS 128 (174)
Q Consensus 72 ---------~~-----~~---~~~-~~~i~~~~id~~~~~~~~~~~~--~~~~-~~~~~~~~~--~~~~~~~~i~~~~~~ 128 (174)
.. .. +.. .|-+++++|+.+ +. +.|. +.+. +......-. ..+.-++.|++++.+
T Consensus 298 LFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L-p~---~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 298 LFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM-PL---PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred hcCCccccccCccccccCCchhccCCCEEEEcChHhC-CH---HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC
Confidence 00 00 111 234666677776 32 2221 1111 100000000 001112225555322
Q ss_pred C------CCCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616 129 P------HGIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK 163 (174)
Q Consensus 129 ~------~~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~ 163 (174)
. ..+.+.|..|+ ..|++||+. .+|+..+++.++.+
T Consensus 374 L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 374 LEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred HHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHH
Confidence 2 23556788888 568888887 57888888877754
No 212
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.51 E-value=2.8e-07 Score=75.30 Aligned_cols=42 Identities=38% Similarity=0.640 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++||+.+++.+.... ..+++++|.||||+|||++++.++..+
T Consensus 193 v~Gq~~~~~al~laa-------~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 193 VIGQEQGKRGLEITA-------AGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred EECcHHHHhhhheec-------cCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 357877776654333 245799999999999999999998765
No 213
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.51 E-value=3.5e-07 Score=64.57 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=41.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccch
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYS 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~ 65 (174)
+||.+...+.+......+.. .+.++|++|++||||+.+|+++-+...+ ..+|+.++|+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~ 63 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE 63 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H
T ss_pred CEeCCHHHHHHHHHHHHHhC---CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc
Confidence 57877777554444433322 3479999999999999999999987653 46899999987643
No 214
>PRK08116 hypothetical protein; Validated
Probab=98.50 E-value=3.1e-07 Score=69.64 Aligned_cols=58 Identities=28% Similarity=0.271 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccc
Q psy14616 7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIY 64 (174)
Q Consensus 7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~ 64 (174)
+...+..+.+.+......+.+++|+|+||+|||+||.++|+.+.. ..+...++...+.
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll 154 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL 154 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 443344333333333333357999999999999999999998732 2334455544433
No 215
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.50 E-value=3.3e-07 Score=71.28 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccc
Q psy14616 8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIY 64 (174)
Q Consensus 8 ~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~ 64 (174)
..++.....++++-.....+++|+||+|||||+|+.++|+++-. ......++...++
T Consensus 166 ~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~ 223 (329)
T PRK06835 166 EKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI 223 (329)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH
Confidence 33444444455532222369999999999999999999998722 2234445554443
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.49 E-value=2e-07 Score=62.57 Aligned_cols=37 Identities=43% Similarity=0.777 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCC-Ceeeeccc
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDT-PFTSMAGS 61 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~-~~~~~~~~ 61 (174)
+++++|+||||||||++++.+|..+.... ....++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 36899999999999999999999997653 34444443
No 217
>KOG0745|consensus
Probab=98.49 E-value=1.6e-07 Score=74.12 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=45.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccc-----ccchhhhhhhh---------hhhhhccCcEEEEEEeccC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-----EIYSLEMNKTE---------EETEMIEGEVVEIQIERPA 91 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~-----~~~~~~~~~~~---------~~~~~~~~~i~~~~id~~~ 91 (174)
.|+||.||+|+|||.+|+-||+.++ +||.-..+. .+.+.++..+. +...--.|.|+++|+|++.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld--VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD--VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC--CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 4999999999999999999999998 667655543 33333333322 1122236789999999983
No 218
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.46 E-value=4.8e-07 Score=75.83 Aligned_cols=155 Identities=20% Similarity=0.289 Sum_probs=79.4
Q ss_pred CCchHHHHHHHHHHH-HHHHh----cC-cC-CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVL-GMIKE----GK-IA-GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~-~~~~~----g~-~~-~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|+|.+++|+++.-.+ .-+.. |. .. .-|+||.|.||||||.+.+.+++.+.+.+ ++...+++-.++......|
T Consensus 288 IyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~v-ytsgkgss~~GLTAav~rd 366 (682)
T COG1241 288 IYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGV-YTSGKGSSAAGLTAAVVRD 366 (682)
T ss_pred ccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceE-EEccccccccCceeEEEEc
Confidence 579999997755322 11111 00 11 13999999999999999999998875432 2222222222111111111
Q ss_pred hh--h----------hccCcEEEEEEeccCCCC------CCccceeEEEeccchhhhccccccchhhhcccCCCCC----
Q psy14616 74 ET--E----------MIEGEVVEIQIERPATGL------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---- 131 (174)
Q Consensus 74 ~~--~----------~~~~~i~~~~id~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 131 (174)
.. + ...|.+-++|+|+|.... ..++|.+......+..+.+ +.+.+ +|++ |+...
T Consensus 367 ~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLn-ARcsv--LAAa-NP~~Gryd~ 442 (682)
T COG1241 367 KVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLN-ARCSV--LAAA-NPKFGRYDP 442 (682)
T ss_pred cCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecc-hhhhh--hhhh-CCCCCcCCC
Confidence 11 1 124556667888772222 2355666555433222222 12222 4555 66532
Q ss_pred ---------CCHHhhccee--eEecCCCCHHHHHHHHHHH
Q psy14616 132 ---------IPIDLLDRMV--IIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 132 ---------l~~~l~sR~~--~i~~~~~~~~e~~~il~~~ 160 (174)
++++|+|||- .+-.+.++++.-..+..+.
T Consensus 443 ~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hi 482 (682)
T COG1241 443 KKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHI 482 (682)
T ss_pred CCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHH
Confidence 7899999993 3334455544334444443
No 219
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.46 E-value=3.6e-07 Score=68.70 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccc
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIY 64 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~ 64 (174)
+.+++|+||||||||+||-+++.++... .....++..+++
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~ 145 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL 145 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 4699999999999999999999988422 233344444443
No 220
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.45 E-value=2.3e-07 Score=61.61 Aligned_cols=23 Identities=48% Similarity=0.953 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
+++.||||+||||+|+.||+.+|
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 68999999999999999999997
No 221
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.42 E-value=5.4e-07 Score=73.98 Aligned_cols=32 Identities=41% Similarity=0.598 Sum_probs=26.9
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+..+.+.+||+|||||||||+++.||+++|.+
T Consensus 41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFE 72 (519)
T ss_pred cCCCcceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 44444678899999999999999999999855
No 222
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.42 E-value=2.9e-07 Score=65.46 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+||.++..+++..+...... ..++.++++|++|+|||++.+.+.+.+
T Consensus 2 fvgR~~e~~~l~~~l~~~~~--~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQS--GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-------EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHc--CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58888888776666652222 234799999999999999999888776
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.42 E-value=1e-07 Score=65.17 Aligned_cols=80 Identities=25% Similarity=0.384 Sum_probs=45.7
Q ss_pred CchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhhccC
Q psy14616 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEMIEG 80 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (174)
||...+.+.+..-...+.. ...+++++|++||||+++|+.+...-+.. .+++..++..... ... .....|
T Consensus 1 vG~S~~~~~l~~~l~~~a~---~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~----~~l--~~a~~g 71 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK---SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPA----ELL--EQAKGG 71 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC---SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCH----HHH--HHCTTS
T ss_pred CCCCHHHHHHHHHHHHHhC---CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcH----HHH--HHcCCC
Confidence 4555555444433333332 33689999999999999999999876542 3444444443221 111 122455
Q ss_pred cEEEEEEecc
Q psy14616 81 EVVEIQIERP 90 (174)
Q Consensus 81 ~i~~~~id~~ 90 (174)
-+++.++|.+
T Consensus 72 tL~l~~i~~L 81 (138)
T PF14532_consen 72 TLYLKNIDRL 81 (138)
T ss_dssp EEEEECGCCS
T ss_pred EEEECChHHC
Confidence 6777788887
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.42 E-value=6.3e-07 Score=69.14 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.++++|+||+|||||+++.++|+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999988
No 225
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.42 E-value=6.1e-07 Score=75.86 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=74.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhh-----hhhh--h---h---hhhc-cCcEEEEEEec
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEM-----NKTE--E---E---TEMI-EGEVVEIQIER 89 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~-----~~~~--~---~---~~~~-~~~i~~~~id~ 89 (174)
..+++|+|++||||+++|+++.+... ...+|+.++|+.+....+ +... . . -+.. .|-+++++|+.
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~ 427 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEY 427 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhh
Confidence 35799999999999999999998775 346899999876643111 1000 0 0 0111 23456667777
Q ss_pred cCCCCCCccce--eEEE-eccchhhhc--cccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--HHHHH
Q psy14616 90 PATGLGSKVGK--LTMK-TTEMETSYD--LGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--DEEIQ 154 (174)
Q Consensus 90 ~~~~~~~~~~~--~~~~-~~~~~~~~~--~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~~e~~ 154 (174)
+ +. ..|. +.+. +........ ..+.-+..|++++.+. ..+.+.|.-|+ ..|.+||+. .+|+.
T Consensus 428 l-~~---~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~ 503 (638)
T PRK11388 428 L-SP---ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIP 503 (638)
T ss_pred C-CH---HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHH
Confidence 6 32 2221 1111 100000000 0011122255553322 34677888888 567788887 46888
Q ss_pred HHHHHHhch
Q psy14616 155 AILKIRLVK 163 (174)
Q Consensus 155 ~il~~~l~~ 163 (174)
.+++..+.+
T Consensus 504 ~L~~~~l~~ 512 (638)
T PRK11388 504 ALVNNKLRS 512 (638)
T ss_pred HHHHHHHHH
Confidence 888877654
No 226
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.41 E-value=1.2e-06 Score=72.45 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=73.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhh-----h--------hhhhh---hc-cCcEEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNK-----T--------EEETE---MI-EGEVVEIQ 86 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~-----~--------~~~~~---~~-~~~i~~~~ 86 (174)
..+++++|++||||+++|+++-....+ ..+|+.++|..+....... . ..... .. .|-+++++
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Lde 306 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDE 306 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeC
Confidence 358999999999999999998765543 3578889987754311110 0 00001 11 34567778
Q ss_pred EeccCCCCCCccce-e-EEE-eccchhhhc--cccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--HH
Q psy14616 87 IERPATGLGSKVGK-L-TMK-TTEMETSYD--LGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--DE 151 (174)
Q Consensus 87 id~~~~~~~~~~~~-~-~~~-~~~~~~~~~--~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~~ 151 (174)
+|.+ +. ..|. + .+. +......-. ..+.-+..|+++..+. ..+.+.|..|+ ..+++||+. .+
T Consensus 307 I~~L-~~---~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~ 382 (520)
T PRK10820 307 IGEM-SP---RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQ 382 (520)
T ss_pred hhhC-CH---HHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChh
Confidence 8776 32 1221 1 111 100000000 0011112255553332 33668899998 568888887 45
Q ss_pred HHHHHHHHHhch
Q psy14616 152 EIQAILKIRLVK 163 (174)
Q Consensus 152 e~~~il~~~l~~ 163 (174)
++..+++..+..
T Consensus 383 Di~~L~~~fl~~ 394 (520)
T PRK10820 383 DIMPLTELFVAR 394 (520)
T ss_pred HHHHHHHHHHHH
Confidence 677666665543
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.39 E-value=8.6e-07 Score=66.19 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccc
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIY 64 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~ 64 (174)
.+++|+||||||||+++.++|..+... .....++..++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 589999999999999999999988321 223344444443
No 228
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.38 E-value=1e-06 Score=72.66 Aligned_cols=156 Identities=18% Similarity=0.246 Sum_probs=83.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh--------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT-------- 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-------- 71 (174)
++|+..+.+.+......+.. ...++|++|++||||+++|+++-+... ...+|+.++|+.+........
T Consensus 214 iiG~S~~m~~~~~~i~~~A~---~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~ga 290 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLYAR---SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGA 290 (526)
T ss_pred eeeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccc
Confidence 46776666444333322222 236999999999999999999987653 346899999876643211110
Q ss_pred -h-----hhh---hhc-cCcEEEEEEeccCCCCCCccce--eEEE-eccchhhh--ccccccchhhhcccCCC------C
Q psy14616 72 -E-----EET---EMI-EGEVVEIQIERPATGLGSKVGK--LTMK-TTEMETSY--DLGAKMIEAIGTAYSSP------H 130 (174)
Q Consensus 72 -~-----~~~---~~~-~~~i~~~~id~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~~~~~~~i~~~~~~~------~ 130 (174)
. ... +.. .|-+++++++.+ +. +.|. +.+. +....... ...+.-++.|++++.+. .
T Consensus 291 ftga~~~~~~Gl~e~A~gGTLfLdeI~~L-p~---~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g 366 (526)
T TIGR02329 291 FTGARRGGRTGLIEAAHRGTLFLDEIGEM-PL---PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQG 366 (526)
T ss_pred cccccccccccchhhcCCceEEecChHhC-CH---HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhc
Confidence 0 001 111 234566677766 32 1221 1110 10000000 00111122255553332 2
Q ss_pred CCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616 131 GIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK 163 (174)
Q Consensus 131 ~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~ 163 (174)
.+.+.|..|+ ..+++||+. .+|+..++..++.+
T Consensus 367 ~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 367 RFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred chhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 3566777888 578899997 57888888777654
No 229
>PRK08181 transposase; Validated
Probab=98.38 E-value=8.9e-07 Score=67.04 Aligned_cols=25 Identities=44% Similarity=0.764 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.+++|+||||||||++|.++++.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH
Confidence 3689999999999999999999876
No 230
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.37 E-value=6.6e-07 Score=75.07 Aligned_cols=45 Identities=31% Similarity=0.538 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
|+||+++++.+.. ++.++ ++++|+||||+|||++++++++.+++.
T Consensus 33 vigq~~a~~~L~~---~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 33 VIGQEHAVEVIKK---AAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cCChHHHHHHHHH---HHHhC----CeEEEECCCCCcHHHHHHHHHHHcChH
Confidence 6899999966554 34443 489999999999999999999988654
No 231
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=1.2e-06 Score=59.04 Aligned_cols=115 Identities=24% Similarity=0.232 Sum_probs=59.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhh--hhh-hhhhc-c--CcEEEEEEeccCCCCCCccc
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNK--TEE-ETEMI-E--GEVVEIQIERPATGLGSKVG 99 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~-~--~~i~~~~id~~~~~~~~~~~ 99 (174)
+.++++||.||||||+++.+++.+........++..+........ ..+ ..+.. + .-++++|++.+ +..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~-~~~----- 76 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL-PDW----- 76 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh-ccH-----
Confidence 578999999999999999999887522223344433222111110 000 01111 1 22445555544 211
Q ss_pred eeEEEeccchhhhccc-cccchhhhcccCCC---CCCCHHhhcceeeEecCCCCHHHH
Q psy14616 100 KLTMKTTEMETSYDLG-AKMIEAIGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEI 153 (174)
Q Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~---~~l~~~l~sR~~~i~~~~~~~~e~ 153 (174)
...+....+.. +.-+ +.|..+.. ......+.+|...+++.|++-.|.
T Consensus 77 -----~~~lk~l~d~~~~~~i--i~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 77 -----EDALKFLVDNGPNIKI--ILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -----HHHHHHHHHhccCceE--EEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 01111122222 2222 33332222 345678889999999999997664
No 232
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.37 E-value=4.5e-07 Score=69.02 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=41.1
Q ss_pred CchHHHHHHHHHHHHHHHhcCcC-CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 2 VGQLQARRAAGVVLGMIKEGKIA-GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~~g~~~-~~~~ll~GppG~GKT~la~~la~~l 49 (174)
||+..++++++.+.+.+...+.. ..++|++|++|.|||++++.+++.-
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 78899999999999888765443 3699999999999999999999865
No 233
>KOG1514|consensus
Probab=98.34 E-value=1.2e-06 Score=72.82 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC--------CCCCeeeecccccchhhh--hhhh---
Q psy14616 6 QARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG--------PDTPFTSMAGSEIYSLEM--NKTE--- 72 (174)
Q Consensus 6 ~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~--------~~~~~~~~~~~~~~~~~~--~~~~--- 72 (174)
.-...|..+.+..-..+..+.-+.++|-||||||.+++.+-+.|- ..+.|+.+|+-.+.+..- ..+.
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~l 482 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEAL 482 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhc
Confidence 333344444433322222334788999999999999998887652 235567777654433110 0000
Q ss_pred -------hh-------------hhhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616 73 -------EE-------------TEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI 132 (174)
Q Consensus 73 -------~~-------------~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 132 (174)
+. ....+..++++|+|.+.+..++ .+. ..+-.....-++.++.+|+-|++-+..+
T Consensus 483 sg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd---VlY--n~fdWpt~~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 483 SGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD---VLY--NIFDWPTLKNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred ccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH---HHH--HHhcCCcCCCCceEEEEecccccCHHHH
Confidence 00 0011224666788777554211 110 0011112222344454466666665443
Q ss_pred -CHHhhcce--eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 133 -PIDLLDRM--VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 133 -~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
..-+-||+ ..+.|.+|+.+++.+|+..+|...
T Consensus 558 l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 558 LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred hccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 45677898 789999999999999999988655
No 234
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.29 E-value=1.2e-06 Score=61.83 Aligned_cols=27 Identities=44% Similarity=0.597 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|+||||+|||++|+.+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999984
No 235
>PRK06921 hypothetical protein; Provisional
Probab=98.28 E-value=1.8e-06 Score=65.42 Aligned_cols=26 Identities=42% Similarity=0.594 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+++|+||||+|||+|+.++|+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 46899999999999999999999874
No 236
>KOG0480|consensus
Probab=98.28 E-value=4.5e-06 Score=68.83 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=87.2
Q ss_pred CCchHHHHHHHHHHH-HHHH--hc-CcC---CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVL-GMIK--EG-KIA---GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~-~~~~--~g-~~~---~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|+|.|.+|.-+-..+ .-+. .+ ..+ .-|+++.|.||+||+-+.++.+..+.+. .++.-+.++-.++...-+.|
T Consensus 347 IyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~-vYtsGkaSSaAGLTaaVvkD 425 (764)
T KOG0480|consen 347 IYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS-VYTSGKASSAAGLTAAVVKD 425 (764)
T ss_pred ccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc-eEecCcccccccceEEEEec
Confidence 578888885433211 0000 00 111 2499999999999999999999877543 23333332222222221111
Q ss_pred h--------hhh----ccCcEEEEEEeccCCCC------CCccceeEEEeccchhhhccccccchhhhcccCCCCC----
Q psy14616 74 E--------TEM----IEGEVVEIQIERPATGL------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---- 131 (174)
Q Consensus 74 ~--------~~~----~~~~i~~~~id~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 131 (174)
. +.. ..|..-++|+|+|..+. ..++|.++........+.+....+ +|++ |+...
T Consensus 426 ~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSI---lAAA-NPv~GhYdR 501 (764)
T KOG0480|consen 426 EESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSI---LAAA-NPVGGHYDR 501 (764)
T ss_pred CCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhh---hhhc-CCcCCcccc
Confidence 1 111 13455666888884322 235566655544433333332222 4555 55522
Q ss_pred ---------CCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616 132 ---------IPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 132 ---------l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~ 162 (174)
+.++++||| ..|-++.+++..-+.+.++.+.
T Consensus 502 ~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 502 KKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred ccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHH
Confidence 679999999 5566788887777777776553
No 237
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=4.3e-06 Score=61.81 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCcCCceEEEEcCCC-CcHHHHHHHHHHHhCCCC------C-eeeeccc-------ccch-hhhhhhhhh
Q psy14616 11 AGVVLGMIKEGKIAGRAILLAGQPG-TGKTAIAMGLAQALGPDT------P-FTSMAGS-------EIYS-LEMNKTEEE 74 (174)
Q Consensus 11 l~~~~~~~~~g~~~~~~~ll~GppG-~GKT~la~~la~~l~~~~------~-~~~~~~~-------~~~~-~~~~~~~~~ 74 (174)
+..+...+++++.. +.+||.|..+ ++|..++..+++.+.+.. | +..+... ..++ ..+.+....
T Consensus 2 ~~~L~~~iq~~kLs-hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~ 80 (263)
T PRK06581 2 IERLEFNLKHNKLY-NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDF 80 (263)
T ss_pred hHHHHHHHHcCcch-heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHH
Confidence 35677888999987 9999999998 999999999998885431 1 1112111 0111 111111111
Q ss_pred hhhc----cCcE-EEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616 75 TEMI----EGEV-VEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP 147 (174)
Q Consensus 75 ~~~~----~~~i-~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~ 147 (174)
.... ..+| ++...|++ +. +..+..++. .+.+ ++.| +..+ ..+..+.|+++|||+.+.+..
T Consensus 81 l~~~p~~g~~KViII~~ae~m-t~---~AANALLKt------LEEPP~~t~f--ILit-~~~~~LLpTIrSRCq~i~~~~ 147 (263)
T PRK06581 81 LSKTSAISGYKVAIIYSAELM-NL---NAANSCLKI------LEDAPKNSYI--FLIT-SRAASIISTIRSRCFKINVRS 147 (263)
T ss_pred HhhCcccCCcEEEEEechHHh-CH---HHHHHHHHh------hcCCCCCeEE--EEEe-CChhhCchhHhhceEEEeCCC
Confidence 1111 1133 33355555 22 222222221 1122 2333 3334 467889999999999999999
Q ss_pred CCHHHHHHHHHHHhch
Q psy14616 148 YQDEEIQAILKIRLVK 163 (174)
Q Consensus 148 ~~~~e~~~il~~~l~~ 163 (174)
++.....++....+.+
T Consensus 148 p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 148 SILHAYNELYSQFIQP 163 (263)
T ss_pred CCHHHHHHHHHHhccc
Confidence 9887777766665544
No 238
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.27 E-value=3e-06 Score=57.35 Aligned_cols=30 Identities=43% Similarity=0.665 Sum_probs=26.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 23 IAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 23 ~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.++..++|.|+.|+||||+++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345688999999999999999999999854
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.27 E-value=8.2e-07 Score=63.31 Aligned_cols=25 Identities=44% Similarity=0.809 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.+++|+||||||||++|.++++++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 4699999999999999999999876
No 240
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.26 E-value=3.9e-06 Score=75.87 Aligned_cols=131 Identities=22% Similarity=0.442 Sum_probs=72.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc------cchhhhhhhh-------hh---hhhccCc-EEEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE------IYSLEMNKTE-------EE---TEMIEGE-VVEIQI 87 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~------~~~~~~~~~~-------~~---~~~~~~~-i~~~~i 87 (174)
+++++|-|.||+|||++..++|+..|.. +++++-++ +++.+...-+ +. +....|. |+.+|+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~k--liRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKK--LIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCc--eEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehh
Confidence 3689999999999999999999999865 55555321 1111111100 00 1112232 444444
Q ss_pred eccCCCCCCccc-e--eEEE-ecc---chhhhccccccchhhhcccCCC------CCCCHHhhcceeeEecCCCCHHHHH
Q psy14616 88 ERPATGLGSKVG-K--LTMK-TTE---METSYDLGAKMIEAIGTAYSSP------HGIPIDLLDRMVIIPTQPYQDEEIQ 154 (174)
Q Consensus 88 d~~~~~~~~~~~-~--~~~~-~~~---~~~~~~~~~~~~~~i~~~~~~~------~~l~~~l~sR~~~i~~~~~~~~e~~ 154 (174)
.-+ +.. .-++ + +.-+ ..+ ++.+++..+. |..+|+. |+. ..+|..++.||-++.++.++.+++.
T Consensus 1621 NLa-SQS-VlEGLNacLDhR~eayIPEld~~f~~Hpn-frVFAaq-NPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~ 1696 (4600)
T COG5271 1621 NLA-SQS-VLEGLNACLDHRREAYIPELDKTFDVHPN-FRVFAAQ-NPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDIT 1696 (4600)
T ss_pred hhh-HHH-HHHHHHHHHhhccccccccccceeeccCC-eeeeeec-CchhcCCCcccCCHHHhhhhheEEecccccchHH
Confidence 322 110 0000 0 0000 111 1222232222 2225555 555 3399999999999999999999999
Q ss_pred HHHHHHh
Q psy14616 155 AILKIRL 161 (174)
Q Consensus 155 ~il~~~l 161 (174)
.|+....
T Consensus 1697 ~Ia~~~y 1703 (4600)
T COG5271 1697 HIANKMY 1703 (4600)
T ss_pred HHHHhhC
Confidence 8887643
No 241
>PRK08118 topology modulation protein; Reviewed
Probab=98.25 E-value=1.4e-06 Score=61.55 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+.+++.||||+||||+|+.|++.++..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999999854
No 242
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.25 E-value=9.4e-07 Score=60.34 Aligned_cols=23 Identities=52% Similarity=0.956 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
++++||||+||||+|+.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999999987
No 243
>PRK06526 transposase; Provisional
Probab=98.23 E-value=1.1e-06 Score=66.18 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.+++|+||||||||++|.+++.++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3699999999999999999999876
No 244
>KOG0478|consensus
Probab=98.23 E-value=2.5e-06 Score=70.79 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHH-HH-----HHHHhcCcCC-ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 1 MVGQLQARRAAGV-VL-----GMIKEGKIAG-RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 1 iiG~~~~~~~l~~-~~-----~~~~~g~~~~-~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
|+|.|++|+.+-- +. +.-+.|+..+ -|+||+|.||||||-+.+.+++.+.+.
T Consensus 431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg 489 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG 489 (804)
T ss_pred hhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc
Confidence 5788888855332 11 1111222221 499999999999999999999887543
No 245
>PRK14532 adenylate kinase; Provisional
Probab=98.22 E-value=1.5e-06 Score=62.39 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL 66 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 66 (174)
++++.||||+||||+|+.+|+.+|. ..++.++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~----~~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGM----VQLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC----eEEeCcHHHHH
Confidence 5899999999999999999999983 34555555543
No 246
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.22 E-value=1.4e-06 Score=62.07 Aligned_cols=34 Identities=24% Similarity=0.642 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
+++.||||+||||+|+.+|+.+| +..++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~----~~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG----FTHLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CeEEECChHHH
Confidence 68999999999999999999997 33455555544
No 247
>PRK14531 adenylate kinase; Provisional
Probab=98.21 E-value=1.7e-06 Score=61.89 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
+.+++.||||+||||+++.+|+.+|.. .++.++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~----~is~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR----HLSTGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC----eEecccHHH
Confidence 478999999999999999999999833 445555554
No 248
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.20 E-value=5.4e-06 Score=67.63 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=74.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhh--hh-----------h----hhccCcEEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTE--EE-----------T----EMIEGEVVEIQ 86 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~--~~-----------~----~~~~~~i~~~~ 86 (174)
..++++.|++|||||++|+++.+...+ ..+|+.++++.+........- .. . ....|-+++++
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 458999999999999999999987653 357888888765321111000 00 0 00134466667
Q ss_pred EeccCCCCCCccce--eEEE-eccchhhhcc--ccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--HH
Q psy14616 87 IERPATGLGSKVGK--LTMK-TTEMETSYDL--GAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--DE 151 (174)
Q Consensus 87 id~~~~~~~~~~~~--~~~~-~~~~~~~~~~--~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~~ 151 (174)
+|.+ +. +.|. +.+. +.......+. ...-++.|++++.+. ..+.+.|..|+ ..|.++|+. .+
T Consensus 241 i~~l-~~---~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~ 316 (469)
T PRK10923 241 IGDM-PL---DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERRE 316 (469)
T ss_pred cccC-CH---HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchh
Confidence 7665 22 1111 0100 0000000000 001112255553332 34778999999 578888887 57
Q ss_pred HHHHHHHHHhch
Q psy14616 152 EIQAILKIRLVK 163 (174)
Q Consensus 152 e~~~il~~~l~~ 163 (174)
++..+++.++.+
T Consensus 317 Di~~l~~~~l~~ 328 (469)
T PRK10923 317 DIPRLARHFLQV 328 (469)
T ss_pred hHHHHHHHHHHH
Confidence 888888777644
No 249
>KOG3347|consensus
Probab=98.19 E-value=1.9e-06 Score=58.86 Aligned_cols=26 Identities=46% Similarity=0.735 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|++|-|||||||++..+|..+|.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCC
Confidence 49999999999999999999999883
No 250
>PRK00625 shikimate kinase; Provisional
Probab=98.18 E-value=2.3e-06 Score=60.75 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+++|.|+||+||||+++.+|+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~ 27 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLP 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999999999999843
No 251
>PRK03839 putative kinase; Provisional
Probab=98.17 E-value=2.3e-06 Score=60.92 Aligned_cols=25 Identities=44% Similarity=0.703 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.|+||+||||+++.+|+.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999999984
No 252
>PRK13947 shikimate kinase; Provisional
Probab=98.17 E-value=2.6e-06 Score=60.08 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.++++.|+||+|||++++.+|+.+|..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 379999999999999999999999854
No 253
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.15 E-value=1.8e-06 Score=56.43 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
+.|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998874
No 254
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.13 E-value=2.2e-06 Score=59.33 Aligned_cols=34 Identities=38% Similarity=0.686 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY 64 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~ 64 (174)
.+.+.||||+||||+|+-+|+.+|.+ .++++.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~vsaG~iF 35 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----LVSAGTIF 35 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----eeeccHHH
Confidence 36689999999999999999999944 34444444
No 255
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.13 E-value=7e-06 Score=66.50 Aligned_cols=134 Identities=18% Similarity=0.221 Sum_probs=73.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhh-------------hhhh---h-hccCcEEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKT-------------EEET---E-MIEGEVVEIQ 86 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~---~-~~~~~i~~~~ 86 (174)
..+++++|++||||+++|+++...... ..+|+.++|..+....+... .... + ...|-+++++
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 368999999999999999999887653 35788888876533211110 0000 0 1124456667
Q ss_pred EeccCCCCCCccce-e-EEE-eccc---hhhhccccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--H
Q psy14616 87 IERPATGLGSKVGK-L-TMK-TTEM---ETSYDLGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--D 150 (174)
Q Consensus 87 id~~~~~~~~~~~~-~-~~~-~~~~---~~~~~~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~ 150 (174)
+|.+ +. ..|. + .+. +... ...... +.-+..|++++.+. ..+.+.|..|+ ..|.+|++. .
T Consensus 242 i~~l-~~---~~q~~l~~~l~~~~~~~~~~~~~~-~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~ 316 (445)
T TIGR02915 242 IGDL-PL---NLQAKLLRFLQERVIERLGGREEI-PVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRD 316 (445)
T ss_pred hhhC-CH---HHHHHHHHHHhhCeEEeCCCCcee-eeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhch
Confidence 7766 32 1111 1 100 0000 000000 11122255553332 34678888898 567888887 5
Q ss_pred HHHHHHHHHHhch
Q psy14616 151 EEIQAILKIRLVK 163 (174)
Q Consensus 151 ~e~~~il~~~l~~ 163 (174)
+++..+++.++..
T Consensus 317 ~Di~~l~~~~l~~ 329 (445)
T TIGR02915 317 GDAVLLANAFLER 329 (445)
T ss_pred hhHHHHHHHHHHH
Confidence 6777777766544
No 256
>PRK14530 adenylate kinase; Provisional
Probab=98.12 E-value=3.3e-06 Score=61.96 Aligned_cols=26 Identities=42% Similarity=0.678 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+++.||||+||||+++.||+.+|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999999983
No 257
>KOG1970|consensus
Probab=98.10 E-value=5.3e-06 Score=67.43 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=27.6
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
...+..+.+||+||+||||||+++.|++++|..
T Consensus 105 ~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 105 TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred ccCCCceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 344455688899999999999999999999854
No 258
>KOG0741|consensus
Probab=98.09 E-value=2.9e-06 Score=68.79 Aligned_cols=37 Identities=35% Similarity=0.571 Sum_probs=29.9
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA 59 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~ 59 (174)
.+.+-..+||.||||+|||+||-.+|...+ +||+.+-
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~--FPFvKii 570 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIALSSD--FPFVKII 570 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHhhcC--CCeEEEe
Confidence 344456899999999999999999998776 7787643
No 259
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.09 E-value=3.7e-06 Score=59.09 Aligned_cols=27 Identities=41% Similarity=0.528 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+++|.|++|+||||+.+++|+.|+..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 589999999999999999999999844
No 260
>PLN02674 adenylate kinase
Probab=98.09 E-value=9.7e-06 Score=60.49 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE 67 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 67 (174)
...++|.||||+||||.|+.||+.+| +..++.++++...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~----~~his~GdllR~~ 69 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAA 69 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC----CcEEchhHHHHHH
Confidence 36799999999999999999999998 3456666666544
No 261
>PRK13949 shikimate kinase; Provisional
Probab=98.08 E-value=4.6e-06 Score=58.97 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+.++|.||||+||||+++.+|+.++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLS 28 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 478999999999999999999999843
No 262
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.08 E-value=3.5e-06 Score=56.24 Aligned_cols=22 Identities=55% Similarity=0.795 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l 49 (174)
+++.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999997
No 263
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.08 E-value=4.9e-06 Score=57.49 Aligned_cols=26 Identities=46% Similarity=0.608 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+++|+|+||+|||++|+.+|+.++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999999743
No 264
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.08 E-value=8.6e-05 Score=60.03 Aligned_cols=62 Identities=24% Similarity=0.416 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccch
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYS 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~ 65 (174)
+||+..+.+.+......+.. ..-++|++|++||||..+|+++-+.-.+ +.||+.+||+.+..
T Consensus 143 liG~S~am~~l~~~i~kvA~---s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~ 205 (464)
T COG2204 143 LVGESPAMQQLRRLIAKVAP---SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE 205 (464)
T ss_pred ceecCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH
Confidence 47777777666666554443 2358999999999999999999887754 35899999887643
No 265
>PLN02200 adenylate kinase family protein
Probab=98.06 E-value=4.9e-06 Score=61.86 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
+..+++.||||+||||+|+.+|+.+|. ..++.++++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~----~his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGF----KHLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCC----eEEEccHHHH
Confidence 357889999999999999999999983 3566666654
No 266
>PRK09183 transposase/IS protein; Provisional
Probab=98.05 E-value=4.1e-06 Score=63.26 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.+++|+||||||||+++.+++..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 267
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.04 E-value=5.8e-06 Score=61.25 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
..++|.||||+||||+|+.+|+.+|. ..++.++++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~----~~is~gdllr 42 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENL----KHINMGNILR 42 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC----cEEECChHHH
Confidence 46899999999999999999999983 3455555554
No 268
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.03 E-value=5.7e-06 Score=59.40 Aligned_cols=24 Identities=50% Similarity=0.715 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+++.||||+||||+|+.||+.+|.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~ 25 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL 25 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999999873
No 269
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.03 E-value=9.2e-06 Score=59.56 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=31.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++|.+.-.+.| .+.+.++. .+.++++||.|+|||++++.+.+.+
T Consensus 1 F~gR~~el~~l---~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKL---KELLESGP--SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHH---HHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHH---HHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 46777666444 44455543 3699999999999999999999988
No 270
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.03 E-value=5.8e-06 Score=58.92 Aligned_cols=35 Identities=37% Similarity=0.696 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
.+++.||||+||||+|+.||+.++ +..++.++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~----i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG----LPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CcEEcHhHHhH
Confidence 588999999999999999999976 34555554443
No 271
>PRK06762 hypothetical protein; Provisional
Probab=98.02 E-value=6.8e-06 Score=57.72 Aligned_cols=26 Identities=42% Similarity=0.704 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++++|+||+||||+|+.+++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56889999999999999999999853
No 272
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.02 E-value=6.4e-06 Score=58.46 Aligned_cols=27 Identities=41% Similarity=0.663 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++.++|.||||+||||+|+.+++.++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 457899999999999999999998864
No 273
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.01 E-value=4.7e-06 Score=59.49 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+++.||||+||||+++.+++.+|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36889999999999999999999873
No 274
>PRK14528 adenylate kinase; Provisional
Probab=98.01 E-value=6.9e-06 Score=58.96 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+.+++.||||+||||+++.+|+.+|.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~ 27 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSI 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999999874
No 275
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.00 E-value=7.2e-06 Score=60.15 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
.+++.||||+||||+|+.+|+.+|. ..++.++++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~----~~is~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI----PHISTGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC----cEEECCccHH
Confidence 4889999999999999999999983 3445544443
No 276
>PF13245 AAA_19: Part of AAA domain
Probab=98.00 E-value=8.5e-06 Score=49.84 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCcHHHH-HHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAI-AMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~l-a~~la~~l 49 (174)
+.+++.||||+|||++ +..+++.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566799999999954 45555444
No 277
>PRK07261 topology modulation protein; Provisional
Probab=98.00 E-value=8.4e-06 Score=57.73 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+++.|+||+||||+|+.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998874
No 278
>KOG2170|consensus
Probab=98.00 E-value=1.6e-05 Score=60.38 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=33.9
Q ss_pred CCchHHHHHHHH-HHHHHHHhcCcC-CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAG-VVLGMIKEGKIA-GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~-~~~~~~~~g~~~-~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.||--+++.+- .+...+.++... |..+=|+|++||||+++++.+|+.+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 468888885533 344444455422 2234479999999999999999987
No 279
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.99 E-value=6.2e-06 Score=60.28 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
+++.||||+||||+|+.||+.+|. ..++.++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~----~~is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL----PHISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC----CeeehhHHHH
Confidence 789999999999999999999873 3445555443
No 280
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.99 E-value=6.6e-06 Score=56.77 Aligned_cols=24 Identities=38% Similarity=0.743 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++|+|+||+||||+|+.+++.++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 689999999999999999999863
No 281
>PRK06217 hypothetical protein; Validated
Probab=97.99 E-value=9.5e-06 Score=58.02 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+++.|+||+||||+|+.|++.+|..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 68999999999999999999999843
No 282
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.98 E-value=5.5e-06 Score=57.99 Aligned_cols=23 Identities=48% Similarity=0.791 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
+++.||||+||||+|+.+++.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999999987
No 283
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.97 E-value=9.1e-06 Score=48.73 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l 49 (174)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999997
No 284
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.97 E-value=9.9e-06 Score=55.41 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+.+.|+||+||||+|+.||+.+|..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~ 26 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6789999999999999999999843
No 285
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.97 E-value=2.6e-05 Score=60.42 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+..++|.|+||+|||++++.+|+.+|..
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg~~ 160 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLGVP 160 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999854
No 286
>PRK14527 adenylate kinase; Provisional
Probab=97.96 E-value=7.6e-06 Score=58.92 Aligned_cols=27 Identities=41% Similarity=0.683 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+++.||||+||||+|+.+|+.++.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999874
No 287
>PRK13948 shikimate kinase; Provisional
Probab=97.95 E-value=1.5e-05 Score=56.96 Aligned_cols=29 Identities=38% Similarity=0.383 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++.+++|.|++|+||||+++.+|+.++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34799999999999999999999999844
No 288
>PRK04040 adenylate kinase; Provisional
Probab=97.94 E-value=1.3e-05 Score=57.58 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++++|+||+||||+++.+++.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5788999999999999999999994
No 289
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.94 E-value=2.5e-05 Score=58.95 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=24.8
Q ss_pred HHhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 134 IDLLDRM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 134 ~~l~sR~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
..+.+|+ ..+++++++.+|+.+++...+.
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 4678887 7899999999999999988764
No 290
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.93 E-value=9.3e-06 Score=56.87 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.++++|.|||||||+++.|+ .+|.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~ 26 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYK 26 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCc
Confidence 57899999999999999999 88744
No 291
>PRK02496 adk adenylate kinase; Provisional
Probab=97.93 E-value=9.1e-06 Score=58.09 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+++.||||+||||+++.+|+.+|.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999999874
No 292
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.92 E-value=3.6e-05 Score=62.56 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccc
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIY 64 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~ 64 (174)
..++++.|++||||+++|+++..... ...+|+.+++..+.
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~ 206 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP 206 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence 46899999999999999999987654 33578888877653
No 293
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.92 E-value=0.00012 Score=59.11 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccc
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIY 64 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~ 64 (174)
|||+..+...+-...+.+.. ....+|+.|.+||||..+|+++-+..++. -+|+.+||+.+.
T Consensus 225 iIG~S~am~~ll~~i~~VA~---Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 225 IIGRSPAMRQLLKEIEVVAK---SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred ceecCHHHHHHHHHHHHHhc---CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 68888888665555555543 33689999999999999999999887554 578999987654
No 294
>PRK13946 shikimate kinase; Provisional
Probab=97.92 E-value=1.4e-05 Score=57.16 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
...++|.|++|+||||+++.+|+.+|..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~ 37 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLP 37 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999854
No 295
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.92 E-value=1.4e-05 Score=58.56 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=17.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
..++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38899999999998766666655
No 296
>PRK06547 hypothetical protein; Provisional
Probab=97.91 E-value=2.8e-05 Score=55.17 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+++.|++|+||||+|+.+++.++.
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367888999999999999999999873
No 297
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.91 E-value=9.2e-06 Score=56.22 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=28.3
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh
Q psy14616 30 LAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68 (174)
Q Consensus 30 l~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 68 (174)
+.||||+||||+|+.||+.+| +..++.+++....+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~----~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG----LVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT----SEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC----cceechHHHHHHHH
Confidence 579999999999999999997 45677666665444
No 298
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.91 E-value=8.6e-05 Score=55.11 Aligned_cols=119 Identities=22% Similarity=0.197 Sum_probs=58.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccC------cEEEEEEeccCCCC----C
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEG------EVVEIQIERPATGL----G 95 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~id~~~~~~----~ 95 (174)
..-.++||+|||||++++.+|+.+|+. .+.++++.-.... ...+++.| =..+++++++.... .
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~--~~vfnc~~~~~~~-----~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~ 105 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRF--VVVFNCSEQMDYQ-----SLSRILKGLAQSGAWLCFDEFNRLSEEVLSVIS 105 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT----EEEEETTSSS-HH-----HHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCe--EEEecccccccHH-----HHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHH
Confidence 466789999999999999999999954 6677776543311 11122222 13444555441000 0
Q ss_pred -----------CccceeEEEeccchhhhcccc-ccchhhhcccCCC----CCCCHHhhcceeeEecCCCCHHHHHHHHH
Q psy14616 96 -----------SKVGKLTMKTTEMETSYDLGA-KMIEAIGTAYSSP----HGIPIDLLDRMVIIPTQPYQDEEIQAILK 158 (174)
Q Consensus 96 -----------~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~----~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 158 (174)
.....+.+. .....+.+ ..+ ++|. |+. ..+|+.++.-|+.+.+..|+-..+.+++-
T Consensus 106 ~~i~~i~~al~~~~~~~~~~----g~~i~l~~~~~i--FiT~-np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 106 QQIQSIQDALRAKQKSFTLE----GQEIKLNPNCGI--FITM-NPGYAGRSELPENLKALFRPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp HHHHHHHHHHHCTSSEEEET----TCEEE--TT-EE--EEEE--B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHHH
T ss_pred HHHHHHHHhhcccccccccC----CCEEEEccceeE--EEee-ccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHHH
Confidence 001111111 11112211 112 2333 433 56899999999999998888777766654
No 299
>PRK06696 uridine kinase; Validated
Probab=97.91 E-value=4.4e-05 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.|++|+||||+|+.|++.|+
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35777899999999999999999993
No 300
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.91 E-value=2.6e-05 Score=61.54 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+++++.|+||+|+|||+|.-.+...+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 4789999999999999999998887743
No 301
>PRK14526 adenylate kinase; Provisional
Probab=97.91 E-value=1.3e-05 Score=58.70 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY 64 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~ 64 (174)
.++|.||||+||||+++.+|+.++. ..++.++++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~----~~is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNY----YHISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC----ceeecChHH
Confidence 4789999999999999999998873 234444444
No 302
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.91 E-value=2.3e-05 Score=52.37 Aligned_cols=29 Identities=55% Similarity=0.851 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++..++|.|+=|.||||+++.+++.+|.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45689999999999999999999999865
No 303
>PHA02624 large T antigen; Provisional
Probab=97.89 E-value=2.9e-05 Score=64.42 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=26.4
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.|....+.++|+||||||||+++.+|++.++
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3544456888999999999999999999995
No 304
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.89 E-value=1e-05 Score=58.40 Aligned_cols=23 Identities=52% Similarity=0.823 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
-++|+|+||+||||+|+.||+.|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 68899999999999999999988
No 305
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.89 E-value=2e-05 Score=55.60 Aligned_cols=27 Identities=48% Similarity=0.769 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+++|.|++|+||||+++.+|+.+|..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~ 29 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYR 29 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468899999999999999999999843
No 306
>PRK05973 replicative DNA helicase; Provisional
Probab=97.88 E-value=2.7e-05 Score=57.90 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=25.9
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..|..++..+++.|+||+|||+++..++...
T Consensus 58 ~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 58 FSQLKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466667789999999999999999888755
No 307
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.88 E-value=1.3e-05 Score=53.80 Aligned_cols=24 Identities=42% Similarity=0.815 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..++++||||+|||++++.+++.+
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 588999999999999999999887
No 308
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.88 E-value=2.1e-05 Score=55.74 Aligned_cols=27 Identities=44% Similarity=0.655 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+++|.||+|+||||+++.+|..++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~ 31 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNME 31 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence 579999999999999999999998743
No 309
>KOG0477|consensus
Probab=97.87 E-value=5.4e-05 Score=62.65 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=34.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcC----------CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIA----------GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~----------~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
|+|.+++|.++...+ -.|-.. .-|+||+|.|||||+-+.+.+++-..+
T Consensus 451 IyGh~~VK~AvAlaL---fGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R 508 (854)
T KOG0477|consen 451 IYGHEDVKRAVALAL---FGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR 508 (854)
T ss_pred hhchHHHHHHHHHHH---hcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc
Confidence 689999997765433 222211 139999999999999999988876544
No 310
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.87 E-value=1e-06 Score=68.80 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=28.2
Q ss_pred CCchHHHHHHHHH-HHHHHHhcC------cCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGV-VLGMIKEGK------IAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~-~~~~~~~g~------~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|+|.+.+|.++-. +..-..... ...-|+||.|.||||||.+.+.+++..
T Consensus 26 i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~ 81 (331)
T PF00493_consen 26 IYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA 81 (331)
T ss_dssp TTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-
T ss_pred CcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC
Confidence 5788888865432 121111100 012399999999999999999876554
No 311
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.86 E-value=1.7e-05 Score=56.28 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..++|.|+||+||||+++.+++.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999885
No 312
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.86 E-value=2.5e-05 Score=57.28 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=27.7
Q ss_pred HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..|..++..++++|+||+|||+++..+|...
T Consensus 11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 11 LLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred HhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345677777889999999999999999999766
No 313
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.86 E-value=1.7e-05 Score=56.40 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+++.||||+||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46789999999999999999998754
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.85 E-value=3.1e-05 Score=57.69 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=28.5
Q ss_pred HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+-+.+..|..++..++++||||+|||+++..++..
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455677777889999999999999999987754
No 315
>PLN02459 probable adenylate kinase
Probab=97.85 E-value=2e-05 Score=59.27 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE 67 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 67 (174)
.+++|.||||+||||+++.+|+.+| +..++.++++...
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~e 67 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG----VPHIATGDLVREE 67 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC----CcEEeCcHHHHHH
Confidence 3588899999999999999999987 3455666665433
No 316
>PHA02774 E1; Provisional
Probab=97.84 E-value=3.7e-05 Score=63.49 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 8 ~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+..+..+++ +......++|+||||||||++|.+|++.++.
T Consensus 418 ~~fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~G 460 (613)
T PHA02774 418 ISFLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG 460 (613)
T ss_pred HHHHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345566666665 3332368999999999999999999999863
No 317
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.84 E-value=5.7e-05 Score=61.50 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=74.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh---------h----hhh---hh-ccCcEEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT---------E----EET---EM-IEGEVVEIQ 86 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~---------~----~~~---~~-~~~~i~~~~ 86 (174)
..++++.|.+||||+++|+++.+... ...+|+.++++.+....+... . ... +. ..|-+++++
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 35899999999999999999988764 345788888776532211110 0 000 01 134456667
Q ss_pred EeccCCCCCCccce-e-E-EEeccchhh---hcc-ccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--
Q psy14616 87 IERPATGLGSKVGK-L-T-MKTTEMETS---YDL-GAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ-- 149 (174)
Q Consensus 87 id~~~~~~~~~~~~-~-~-~~~~~~~~~---~~~-~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~-- 149 (174)
+|.+ +. ..|. + . +.+...... ... .+..+ |++++.+. ..+.+.|..|+ ..|+++++.
T Consensus 237 i~~l-~~---~~q~~ll~~l~~~~~~~~~~~~~~~~~~ri--i~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R 310 (463)
T TIGR01818 237 IGDM-PL---DAQTRLLRVLADGEFYRVGGRTPIKVDVRI--VAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRER 310 (463)
T ss_pred hhhC-CH---HHHHHHHHHHhcCcEEECCCCceeeeeeEE--EEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccc
Confidence 7766 22 1111 1 0 000000000 000 01112 55553332 34667889998 478899998
Q ss_pred HHHHHHHHHHHhch
Q psy14616 150 DEEIQAILKIRLVK 163 (174)
Q Consensus 150 ~~e~~~il~~~l~~ 163 (174)
.+++..+++.++..
T Consensus 311 ~~Di~~l~~~~l~~ 324 (463)
T TIGR01818 311 REDIPRLARHFLAL 324 (463)
T ss_pred hhhHHHHHHHHHHH
Confidence 78888888877644
No 318
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.83 E-value=1.8e-05 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
+++++|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999999888
No 319
>PRK14529 adenylate kinase; Provisional
Probab=97.82 E-value=2e-05 Score=58.12 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.||||+||||.++.||+.++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999999974
No 320
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.82 E-value=1.1e-05 Score=59.28 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~ 47 (174)
+..+|+||+||+||||+|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 36799999999999999999973
No 321
>PRK10646 ADP-binding protein; Provisional
Probab=97.82 E-value=7e-05 Score=51.87 Aligned_cols=29 Identities=41% Similarity=0.636 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++..++|.|+=|+||||+++++++.+|.+
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45688999999999999999999999854
No 322
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.82 E-value=6.2e-05 Score=58.67 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=35.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc-CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI-AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~-~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++|.++++..+-........|.. ..+.++|.||+|+|||++++.|-+.+
T Consensus 63 ~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 63 FYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46877777554443333333333 34678899999999999999999876
No 323
>KOG0482|consensus
Probab=97.82 E-value=3.7e-05 Score=62.25 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=35.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcC--cC--------CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGK--IA--------GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~--~~--------~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
|+|.+++|++|-.++ ..|- .+ .-|++|.|.||+-|+-|.+.+.+...+
T Consensus 344 IyGheDVKKaLLLlL---VGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR 401 (721)
T KOG0482|consen 344 IYGHEDVKKALLLLL---VGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR 401 (721)
T ss_pred hccchHHHHHHHHHh---hCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc
Confidence 689999997766544 3221 11 128999999999999999999876543
No 324
>PRK08233 hypothetical protein; Provisional
Probab=97.81 E-value=2.1e-05 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.|+||+||||+|+.|+..++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4677899999999999999999986
No 325
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.81 E-value=3.6e-05 Score=58.61 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
++.+.+.+.......+.+.++|++|+|||++|+.+++.
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 34555555553344568889999999999999999987
No 326
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.81 E-value=2.1e-05 Score=56.97 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|+.++|.||+|+||||++-.+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999888888765
No 327
>PRK15115 response regulator GlrR; Provisional
Probab=97.79 E-value=6.2e-05 Score=60.99 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeeccccc
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEI 63 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~ 63 (174)
..++++|++|||||++|+++.+.... ..+|+.+++..+
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~ 196 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGAL 196 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCC
Confidence 57999999999999999999887653 357888887765
No 328
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.79 E-value=2e-05 Score=56.52 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.||+|+||||+++.|+..++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 57899999999999999999988764
No 329
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.78 E-value=3e-05 Score=56.46 Aligned_cols=32 Identities=38% Similarity=0.504 Sum_probs=26.6
Q ss_pred HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 18 ~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+-.|...+..++++||||+|||+++..++...
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566667888999999999999999998755
No 330
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.77 E-value=0.0007 Score=55.44 Aligned_cols=42 Identities=24% Similarity=0.408 Sum_probs=34.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccch
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYS 65 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~ 65 (174)
....+|+.|.+||||..+|+++-+...+. .||+.+||+.+..
T Consensus 267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 34699999999999999999998776443 5899999876643
No 331
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.76 E-value=3.3e-05 Score=54.73 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..++|.|+||+||||+|+.++..+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999999883
No 332
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.76 E-value=4.3e-05 Score=56.34 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=27.9
Q ss_pred HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+++..|...+..++++||||+|||+++..+|...
T Consensus 14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445676667888999999999999999999755
No 333
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.75 E-value=3.5e-05 Score=56.85 Aligned_cols=43 Identities=28% Similarity=0.555 Sum_probs=30.2
Q ss_pred HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh----CCCCCeeee
Q psy14616 16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL----GPDTPFTSM 58 (174)
Q Consensus 16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l----~~~~~~~~~ 58 (174)
+.+..|..++..+|+.||||+|||+++..++... |..+-++.+
T Consensus 10 ~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 10 ELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp HHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred HhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 3445677778899999999999999999877433 554444443
No 334
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.75 E-value=2.6e-05 Score=53.89 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.++++||||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999998773
No 335
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.75 E-value=3.7e-05 Score=54.80 Aligned_cols=22 Identities=50% Similarity=0.697 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l 49 (174)
++++||||+|||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999887654
No 336
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.74 E-value=2.8e-05 Score=59.81 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+++.||||+||||+|+.+++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 468899999999999999999998
No 337
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.73 E-value=4e-05 Score=55.54 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+++.|+||+||||+|+.+|..++.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57889999999999999999999874
No 338
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.73 E-value=6.4e-05 Score=56.74 Aligned_cols=41 Identities=32% Similarity=0.494 Sum_probs=30.2
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeec
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMA 59 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~ 59 (174)
-.|...+..++++|+||||||+++..++... |..+.++.+.
T Consensus 17 ~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 17 GGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred cCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3556667899999999999999999888765 3334444444
No 339
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.73 E-value=2.9e-05 Score=58.22 Aligned_cols=23 Identities=43% Similarity=0.787 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
++|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999883
No 340
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.72 E-value=8e-05 Score=59.51 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 9 RAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 9 ~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
..|..+..+++. ..|+++.||+|||||+++.+++..
T Consensus 197 ~~L~rl~~fve~----~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 197 LLLARLLPLVEP----NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHhhHHHHhc----CCcEEEECCCCCCHHHHHHHHhHH
Confidence 334455556664 369999999999999999998876
No 341
>PF05729 NACHT: NACHT domain
Probab=97.72 E-value=3.5e-05 Score=53.53 Aligned_cols=24 Identities=42% Similarity=0.811 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.++++|+||+|||++++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 357899999999999999999877
No 342
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=6.7e-05 Score=59.36 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999764
No 343
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.71 E-value=3.3e-05 Score=58.82 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=37.3
Q ss_pred hcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 123 ~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+||.|+...++++|+|||+++.|.+++.+++.+++++.+..
T Consensus 14 ATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~ 54 (300)
T PRK14700 14 ATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQ 54 (300)
T ss_pred ecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHh
Confidence 36667779999999999999999999999999999998865
No 344
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.71 E-value=0.00023 Score=59.62 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHhc-CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhh-----hh--hh
Q psy14616 4 QLQARRAAGVVLGMIKEG-KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKT-----EE--ET 75 (174)
Q Consensus 4 ~~~~~~~l~~~~~~~~~g-~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--~~ 75 (174)
|++++.++..+. .+. .. .++++.|++|++|++++++++..|....+|+.++-+..-..-+|.. -. ..
T Consensus 8 ~~~~~~Al~l~a---v~p~~~--gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~ 82 (584)
T PRK13406 8 WADAALAAALLA---VDPAGL--GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRP 82 (584)
T ss_pred HHHHHHHHHHhC---cCcccc--ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCc
Confidence 666775544433 222 22 4899999999999999999999987655666554332211112221 00 00
Q ss_pred hhccC--------cEEEEEEeccCCCC------CCccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhc
Q psy14616 76 EMIEG--------EVVEIQIERPATGL------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLD 138 (174)
Q Consensus 76 ~~~~~--------~i~~~~id~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~s 138 (174)
...|| .++++|+.++-... ..+.+.+.+.-. ...+. .+.-|.+|++. |.. ..+++++++
T Consensus 83 ~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~--G~s~~-~Pa~F~LIat~-~~~~~~~~L~~~lLD 158 (584)
T PRK13406 83 VAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERD--GLALR-LPARFGLVALD-EGAEEDERAPAALAD 158 (584)
T ss_pred CCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEEC--CcEEe-cCCCcEEEecC-CChhcccCCCHHhHh
Confidence 11222 33444554441111 012222222111 11111 22334346653 322 558999999
Q ss_pred ce-eeEecCCCCHHHH
Q psy14616 139 RM-VIIPTQPYQDEEI 153 (174)
Q Consensus 139 R~-~~i~~~~~~~~e~ 153 (174)
|| ..+.+..++..+.
T Consensus 159 Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 159 RLAFHLDLDGLALRDA 174 (584)
T ss_pred heEEEEEcCCCChHHh
Confidence 99 7788887775543
No 345
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.70 E-value=6.1e-05 Score=55.67 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=26.9
Q ss_pred HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+.+..|..++..+++.||||+|||+++..++..
T Consensus 11 ~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 11 KLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred HhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence 334567777889999999999999999988754
No 346
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.70 E-value=0.00011 Score=57.46 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..+++++||+|+||||+.+++...+...
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 4699999999999999999999988644
No 347
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.69 E-value=3.9e-05 Score=53.22 Aligned_cols=25 Identities=36% Similarity=0.755 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.++||||+||||++..++..|.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 5789999999999999999998883
No 348
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.69 E-value=0.00011 Score=56.33 Aligned_cols=27 Identities=41% Similarity=0.633 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
-.+++.|++|+|||++|..||+.+|..
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 578899999999999999999999754
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.69 E-value=6.7e-05 Score=56.67 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=29.3
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeec
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMA 59 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~ 59 (174)
.|..++..++++||||+|||+++..+|... |..+.|+.+.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 566667889999999999999999987643 4344444443
No 350
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.69 E-value=0.00016 Score=51.82 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+++.||+|+||||+.++++..+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 468999999999999999999988753
No 351
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.69 E-value=0.00024 Score=56.05 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+..+..+..+++ |.....-++++|||.||||+++..|-+.++..
T Consensus 245 ~i~Fl~~lk~~Lk-g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~Gk 289 (432)
T PF00519_consen 245 FISFLIALKQFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK 289 (432)
T ss_dssp HHHHHHHHHHHHH-TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHh-CCCcccEEEEECCCCCchhHHHHHHHHHhCCE
Confidence 4555667777776 44444567799999999999999999999644
No 352
>PRK01184 hypothetical protein; Provisional
Probab=97.68 E-value=3.9e-05 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++++||||+||||+++ +++.+|.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~ 26 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGI 26 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCC
Confidence 67899999999999998 7888873
No 353
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.68 E-value=4.3e-05 Score=54.87 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..++|+||+|+|||++++.|.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998875
No 354
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.68 E-value=3.5e-05 Score=53.98 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
++|+|+|||||||+++.|++. |
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g 23 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-G 23 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T
T ss_pred EEEECCCCCCHHHHHHHHHHc-C
Confidence 789999999999999999988 5
No 355
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.67 E-value=5.9e-05 Score=68.73 Aligned_cols=141 Identities=15% Similarity=0.234 Sum_probs=79.3
Q ss_pred HHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc----------cchhhhhhhhhh----h-hhcc
Q psy14616 15 LGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE----------IYSLEMNKTEEE----T-EMIE 79 (174)
Q Consensus 15 ~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~----~-~~~~ 79 (174)
++.+++-....-++|+.||+.+|||++...+|+..|.. |++++... +.+.+-|+.+-. . .+..
T Consensus 878 ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghk--fVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~ 955 (4600)
T COG5271 878 LNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHK--FVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR 955 (4600)
T ss_pred HHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCcc--EEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc
Confidence 33334333333489999999999999999999999955 77776321 111111111100 0 1112
Q ss_pred CcEEEEEEecc-CCCCCC-ccceeEEEe---ccc--hhhhccccccchhhhcccCCCCC------CCHHhhcceeeEecC
Q psy14616 80 GEVVEIQIERP-ATGLGS-KVGKLTMKT---TEM--ETSYDLGAKMIEAIGTAYSSPHG------IPIDLLDRMVIIPTQ 146 (174)
Q Consensus 80 ~~i~~~~id~~-~~~~~~-~~~~~~~~~---~~~--~~~~~~~~~~~~~i~~~~~~~~~------l~~~l~sR~~~i~~~ 146 (174)
| .++-+|++ ..++.. +.-+..+.+ .++ .+...-++.-|.++||. |+|.. +..|++.||..++|.
T Consensus 956 G--yWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQ-Nppg~YgGRK~LSrAFRNRFlE~hFd 1032 (4600)
T COG5271 956 G--YWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ-NPPGGYGGRKGLSRAFRNRFLEMHFD 1032 (4600)
T ss_pred C--cEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeec-CCCccccchHHHHHHHHhhhHhhhcc
Confidence 2 23334433 122110 001111111 111 12222345556657777 77732 789999999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy14616 147 PYQDEEIQAILKIR 160 (174)
Q Consensus 147 ~~~~~e~~~il~~~ 160 (174)
...++|+..||..+
T Consensus 1033 dipedEle~ILh~r 1046 (4600)
T COG5271 1033 DIPEDELEEILHGR 1046 (4600)
T ss_pred cCcHHHHHHHHhcc
Confidence 99999999999873
No 356
>PRK13975 thymidylate kinase; Provisional
Probab=97.67 E-value=4.9e-05 Score=54.72 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|++|+||||+++.|++.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999999974
No 357
>PRK07667 uridine kinase; Provisional
Probab=97.67 E-value=0.00011 Score=53.10 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.|+||+||||+|+.|++.++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4667899999999999999999884
No 358
>PRK13808 adenylate kinase; Provisional
Probab=97.66 E-value=5e-05 Score=59.08 Aligned_cols=35 Identities=29% Similarity=0.532 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
.++|.||||+||||+++.||+.+|. ..++.++++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl----~~is~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI----VQLSTGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC----ceecccHHHH
Confidence 4889999999999999999999873 4555555554
No 359
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.66 E-value=7.7e-05 Score=54.20 Aligned_cols=37 Identities=43% Similarity=0.714 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY 64 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~ 64 (174)
+.++++||+|||||.+|-.+|+.+|. +.+..+.--++
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~--pvI~~Driq~y 38 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGA--PVISLDRIQCY 38 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG-
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCC--CEEEecceecc
Confidence 36789999999999999999999984 45555544333
No 360
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.65 E-value=4.9e-05 Score=54.85 Aligned_cols=25 Identities=48% Similarity=0.630 Sum_probs=22.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+-+.||||+||||+|+.|+..|+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 5689999999999999999999743
No 361
>PLN02199 shikimate kinase
Probab=97.65 E-value=0.00015 Score=55.42 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++.+++|.|.+|+|||++++.+|+.+|..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~ 129 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYT 129 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35799999999999999999999999854
No 362
>PRK04182 cytidylate kinase; Provisional
Probab=97.65 E-value=5.3e-05 Score=53.60 Aligned_cols=26 Identities=46% Similarity=0.727 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+++.|++|+||||+++.+|+.+|..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~ 27 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLK 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 47899999999999999999999843
No 363
>PRK12338 hypothetical protein; Provisional
Probab=97.65 E-value=4.9e-05 Score=58.73 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+++.|+||+||||+|+.+|+.+|.
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~ 30 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNI 30 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 57889999999999999999999974
No 364
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.65 E-value=0.00012 Score=56.92 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.||+|+||||++..+|..+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688899999999999999999877
No 365
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.65 E-value=5.3e-05 Score=54.97 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..++|.||+|+|||++++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999999874
No 366
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.64 E-value=4.3e-05 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.-++|.||+|+||||+++.|++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4688999999999999999998763
No 367
>PRK04328 hypothetical protein; Provisional
Probab=97.64 E-value=7.2e-05 Score=56.16 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.6
Q ss_pred HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+-+.+..|..++..++++||||+|||+++..++..
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444567767789999999999999999987754
No 368
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.63 E-value=0.0001 Score=57.86 Aligned_cols=28 Identities=36% Similarity=0.625 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..+++++||+|+||||++++++..+...
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~ 189 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQ 189 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCC
Confidence 4699999999999999999999887543
No 369
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.63 E-value=5.5e-05 Score=52.31 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l 49 (174)
++++|+||+||||+|+.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999988
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.62 E-value=8.4e-05 Score=56.53 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++.++|.||+|+||||++..+|..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4678899999999999999999877
No 371
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.62 E-value=8.2e-05 Score=55.24 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=28.5
Q ss_pred HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+-+.+..|...+..++++||||+|||+++..++...
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 334445676667899999999999999999997653
No 372
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.61 E-value=7.3e-05 Score=53.21 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+.+.||+|+||||+++.++..++.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457899999999999999999998863
No 373
>KOG0481|consensus
Probab=97.59 E-value=0.00012 Score=59.39 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcC---cC-------CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGK---IA-------GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~---~~-------~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|+|.+++|+++.=++ =.|. +| .=|+||.|.|||-|+-+.+.+-+..
T Consensus 333 IfG~~DiKkAiaClL---FgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs 388 (729)
T KOG0481|consen 333 IFGHEDIKKAIACLL---FGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS 388 (729)
T ss_pred hcCchhHHHHHHHHh---hcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC
Confidence 579999997776544 2221 11 1399999999999999998876654
No 374
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.58 E-value=7.6e-05 Score=52.40 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+.++|++|+|||++|+.+|+.+|..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~ 27 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK 27 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 47899999999999999999999843
No 375
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.58 E-value=7.4e-05 Score=54.48 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+++.|++.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999999984
No 376
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.58 E-value=8.2e-05 Score=61.09 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=28.0
Q ss_pred HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
|-+.+..|..++..+|+.||||+|||++|..++..
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~ 44 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 44 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444567777889999999999999999998653
No 377
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.58 E-value=0.00014 Score=58.28 Aligned_cols=26 Identities=42% Similarity=0.728 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|+.||||.||||+|.++|..++.
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHHh
Confidence 59999999999999999999998743
No 378
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.56 E-value=0.00019 Score=58.06 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|+|++|+||||++..+|..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999877
No 379
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.55 E-value=8.2e-05 Score=54.25 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+..++|+||+|+||||+++.|.+.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 468889999999999999999754
No 380
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.55 E-value=6.2e-05 Score=55.87 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=25.1
Q ss_pred HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.+..|..++..+++.||||+|||+++..++..+
T Consensus 16 ~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 16 RLGGGIPAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred hhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 334455557788999999999999987666544
No 381
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.55 E-value=0.0003 Score=48.30 Aligned_cols=30 Identities=43% Similarity=0.732 Sum_probs=26.5
Q ss_pred CcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 22 KIAGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 22 ~~~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++..++|.|+=|.||||+++++++.+|.
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 345679999999999999999999999984
No 382
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.55 E-value=9.2e-05 Score=53.96 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+.+.||+|+||||++++++..++.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356779999999999999999998753
No 383
>PLN02165 adenylate isopentenyltransferase
Probab=97.54 E-value=0.00011 Score=57.13 Aligned_cols=27 Identities=22% Similarity=0.586 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+++.||+|+|||++|..||..++.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 458899999999999999999999874
No 384
>KOG1051|consensus
Probab=97.54 E-value=0.00011 Score=63.60 Aligned_cols=149 Identities=22% Similarity=0.289 Sum_probs=79.0
Q ss_pred CCch--HHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhh--------
Q psy14616 1 MVGQ--LQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMN-------- 69 (174)
Q Consensus 1 iiG~--~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~-------- 69 (174)
++|. +++++.++.+.+ +- .+|-+|.|.||+|||.++..+|+..-.. ++- .+....++..+++
T Consensus 188 vigr~deeirRvi~iL~R-----rt-k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~-~l~~~~l~~l~~g~l~aGa~~ 260 (898)
T KOG1051|consen 188 VIGRHDEEIRRVIEILSR-----KT-KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPE-TLKDKKLIALDFGSLVAGAKR 260 (898)
T ss_pred ccCCchHHHHHHHHHHhc-----cC-CCCceEEecCCCCchhHHHHHHHHhhcCCCCc-cccccceEEEEhhhcccCccc
Confidence 4674 777877777763 22 2689999999999999999999987221 221 1111222222222
Q ss_pred --hhhh----h-hhhc-cCcEEEE---EEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC----CCCH
Q psy14616 70 --KTEE----E-TEMI-EGEVVEI---QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH----GIPI 134 (174)
Q Consensus 70 --~~~~----~-~~~~-~~~i~~~---~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~ 134 (174)
.++. . .++. .+.-+++ +++-+...... .+.+. ..+.+........ +.+|+++++..+ .-+|
T Consensus 261 rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-~~~~d-~~nlLkp~L~rg~--l~~IGatT~e~Y~k~iekdP 336 (898)
T KOG1051|consen 261 RGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-YGAID-AANLLKPLLARGG--LWCIGATTLETYRKCIEKDP 336 (898)
T ss_pred chHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-chHHH-HHHhhHHHHhcCC--eEEEecccHHHHHHHHhhCc
Confidence 1110 0 0111 2233334 44444222111 00000 0000111111222 333777766653 3589
Q ss_pred HhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616 135 DLLDRMVIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 135 ~l~sR~~~i~~~~~~~~e~~~il~~~ 160 (174)
++-.|++.+.++-++.++...+|+..
T Consensus 337 alErrw~l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 337 ALERRWQLVLVPIPSVENLSLILPGL 362 (898)
T ss_pred chhhCcceeEeccCcccchhhhhhhh
Confidence 99999988888888887777777663
No 385
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.54 E-value=0.00023 Score=51.50 Aligned_cols=24 Identities=50% Similarity=0.729 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++.||||||||++.+.+++.+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHH
Confidence 478889999999999999888766
No 386
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.53 E-value=9.8e-05 Score=54.69 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 18 ~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+..|..++..+.++||||+|||+++..++..
T Consensus 12 l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred ccCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456666788899999999999999999855
No 387
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.53 E-value=8.6e-05 Score=53.66 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l 49 (174)
+.+.||+|+||||+++.++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987
No 388
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.53 E-value=7.9e-05 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
+++.||+|+|||++++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 67899999999999999999864
No 389
>PRK10536 hypothetical protein; Provisional
Probab=97.53 E-value=0.0002 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.||+|||||++|.++|..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48889999999999999999984
No 390
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.52 E-value=0.00013 Score=53.63 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=26.9
Q ss_pred HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 18 ~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..|..++..+.++||||+|||+++..+|...
T Consensus 12 l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 12 LGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred hCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 34677777889999999999999999998764
No 391
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.52 E-value=0.00016 Score=54.81 Aligned_cols=28 Identities=32% Similarity=0.631 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..++++.||+|+||||+..++...+...
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ceEEEEECCCccccchHHHHHhhhcccc
Confidence 4699999999999999999999988544
No 392
>KOG2543|consensus
Probab=97.52 E-value=0.00072 Score=53.15 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY 64 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~ 64 (174)
|.++.++|-.|||||++.+.+-+.++. +.+-+++-+++
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~n~--~~vw~n~~ecf 67 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKLNL--ENVWLNCVECF 67 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhcCC--cceeeehHHhc
Confidence 467899999999999999999999864 34555554444
No 393
>PTZ00202 tuzin; Provisional
Probab=97.51 E-value=0.00017 Score=58.08 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=34.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++|.+....++.........+ .+.-++|.||+|+|||++++.++..++
T Consensus 264 FVGReaEla~Lr~VL~~~d~~--~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 264 FVSREAEESWVRQVLRRLDTA--HPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCcHHHHHHHHHHHhccCCC--CceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467777775555544322222 235778999999999999999998886
No 394
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.51 E-value=0.00014 Score=53.67 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=26.7
Q ss_pred HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+.+..|..++..+++.|+||+|||+++..++..
T Consensus 7 ~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~ 39 (224)
T TIGR03880 7 EMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQ 39 (224)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334566666788999999999999999988864
No 395
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.50 E-value=0.00018 Score=60.12 Aligned_cols=28 Identities=32% Similarity=0.511 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+..++|+|+||+||||+|+.||..++.
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3568889999999999999999999974
No 396
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.50 E-value=0.00021 Score=58.69 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=30.0
Q ss_pred HHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 13 VVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 13 ~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.+-+.+-.|..++..+|+.||||+|||+++..++...
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444556677778899999999999999999998765
No 397
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.50 E-value=0.00023 Score=54.89 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+++++||+|+||||++++++..+.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 36999999999999999999998874
No 398
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.50 E-value=0.00019 Score=50.77 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~ 63 (174)
.+++.||||+|||++|..++..++.+ ...+..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~--~~~iat~~~ 37 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ--VLYIATAQP 37 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC--cEeCcCCCC
Confidence 58899999999999999999988754 334444433
No 399
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.49 E-value=0.00011 Score=62.97 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+.+.||||+||||+++.||+.+|.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~ 27 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGY 27 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999983
No 400
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.49 E-value=0.00032 Score=56.77 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=72.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhhh--hh-----------h----hhccCcEEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKTE--EE-----------T----EMIEGEVVEIQ 86 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~--~~-----------~----~~~~~~i~~~~ 86 (174)
...++++|.+||||+++|+++..... ...+|+.++++.+....+...- .. . ....|-+++++
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 46899999999999999999987664 3367888888765432221100 00 0 00134467778
Q ss_pred EeccCCCCCCcccee--EE-Eeccchhhh--ccccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--HH
Q psy14616 87 IERPATGLGSKVGKL--TM-KTTEMETSY--DLGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--DE 151 (174)
Q Consensus 87 id~~~~~~~~~~~~~--~~-~~~~~~~~~--~~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~~ 151 (174)
+|.+ +. ..|.. .+ ........- .....-+..|++++.+. ..+.+.|..|+ ..+.++++. .+
T Consensus 242 i~~l-~~---~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~ 317 (441)
T PRK10365 242 IGDI-SP---MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRRE 317 (441)
T ss_pred cccC-CH---HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcch
Confidence 8877 32 11210 00 000000000 00011112255554333 23667777887 456677776 45
Q ss_pred HHHHHHHHHhch
Q psy14616 152 EIQAILKIRLVK 163 (174)
Q Consensus 152 e~~~il~~~l~~ 163 (174)
++..+++..+.+
T Consensus 318 Di~~l~~~~l~~ 329 (441)
T PRK10365 318 DIPLLAGHFLQR 329 (441)
T ss_pred hHHHHHHHHHHH
Confidence 777777776654
No 401
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.00012 Score=53.21 Aligned_cols=35 Identities=34% Similarity=0.627 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
.+-+-||+|+||+|+|+.+|+.|| |.+++.+.++.
T Consensus 6 ~IAIDGPagsGKsTvak~lA~~Lg----~~yldTGamYR 40 (222)
T COG0283 6 IIAIDGPAGSGKSTVAKILAEKLG----FHYLDTGAMYR 40 (222)
T ss_pred EEEEeCCCccChHHHHHHHHHHhC----CCeecccHHHH
Confidence 566889999999999999999998 44666665553
No 402
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.48 E-value=0.00011 Score=56.10 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.||+|+||||++..+|..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999876
No 403
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.48 E-value=0.00025 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.+++++|++|+||||+.++++..+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 404
>PRK06761 hypothetical protein; Provisional
Probab=97.48 E-value=0.00012 Score=55.77 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+.+++.||||+||||+++.+++.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46889999999999999999999864
No 405
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.48 E-value=0.00013 Score=50.77 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+.|+|.||+||||+|+++.+.|
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999988
No 406
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00011 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|+||+|+||+|++++|-...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999998876
No 407
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.46 E-value=0.00012 Score=53.12 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.+++.||+|+||||++.++++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998874
No 408
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.46 E-value=0.00019 Score=53.44 Aligned_cols=29 Identities=38% Similarity=0.691 Sum_probs=25.6
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++..+++.|+||+|||+++..++...
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 77788899999999999999999887654
No 409
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.00012 Score=57.10 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.-++|.||+||||||+.+.+|-..
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999543
No 410
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.45 E-value=0.0002 Score=55.62 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=24.6
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..++++||||+|||+||..++...
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 466666788899999999999998877554
No 411
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.44 E-value=0.00014 Score=51.45 Aligned_cols=23 Identities=52% Similarity=0.625 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
.+++.||||+|||+++..+|..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999876
No 412
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.44 E-value=0.00023 Score=64.21 Aligned_cols=48 Identities=27% Similarity=0.246 Sum_probs=34.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+||.+.-.+.+..+.. -+....+.+-++||+|+||||+|++++..+..
T Consensus 186 ~vG~~~~l~~l~~lL~---l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 186 FVGIEDHIAKMSSLLH---LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccchHHHHHHHHHHHc---cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4787777766555442 22223467889999999999999999887743
No 413
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.43 E-value=0.0002 Score=55.40 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+++.||+|+|||++|..||+.++.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 57889999999999999999999874
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00031 Score=57.39 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.||+|+||||++..||..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4578899999999999999999765
No 415
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.43 E-value=0.00019 Score=59.03 Aligned_cols=37 Identities=24% Similarity=0.519 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
+..+.+.||+|+||||+++.+|+.+| +..++.+.++.
T Consensus 284 ~~ii~i~G~sgsGKst~a~~la~~l~----~~~~d~g~~YR 320 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKLG----LLYLDTGAMYR 320 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC----CeEecCCceeh
Confidence 45778999999999999999999997 33455444443
No 416
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.43 E-value=0.00015 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+.++||.||+|+|||++|..+.+.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 579999999999999999888875
No 417
>KOG3354|consensus
Probab=97.42 E-value=0.00018 Score=49.71 Aligned_cols=27 Identities=33% Similarity=0.617 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..+++.|++|+||||++++++++|+++
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~ 39 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLK 39 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCc
Confidence 478899999999999999999999865
No 418
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.42 E-value=0.00015 Score=51.78 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
+.+.|+||+||||+|+.++..+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999884
No 419
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.00022 Score=52.56 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=25.0
Q ss_pred HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..++|. .+.|+.|||||||||+.+-+|+.+
T Consensus 132 ly~~g~---lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 132 LYQNGW---LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred HHhcCc---eeeEEecCCCCChHHHHHHHHHHh
Confidence 344554 379999999999999999999987
No 420
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.42 E-value=0.00024 Score=55.05 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=25.1
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..|...+..++++||||+|||+++..+|...
T Consensus 89 ~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 89 GGGIETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455556778899999999999999998663
No 421
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.42 E-value=0.00016 Score=51.99 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|++|+||||+++.|++.++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999853
No 422
>PRK04132 replication factor C small subunit; Provisional
Probab=97.42 E-value=0.00014 Score=62.92 Aligned_cols=35 Identities=34% Similarity=0.578 Sum_probs=29.0
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHH
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTA 40 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~ 40 (174)
||||++++ ..+..++++++.+ |++|+||||+||+.
T Consensus 21 IiGqe~i~---~~Lk~~i~~~~i~--h~l~~g~~g~~~cl 55 (846)
T PRK04132 21 IVGQEHIV---KRLKHYVKTGSMP--HLLFAGPPGVGKCL 55 (846)
T ss_pred hcCcHHHH---HHHHHHHHcCCCC--eEEEECCCCCCccc
Confidence 69999999 4666666888776 68899999999964
No 423
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.42 E-value=0.00018 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+.+.||+|+||||+++.+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~ 28 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGY 28 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5778999999999999999999984
No 424
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.41 E-value=0.00023 Score=50.84 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++.++|.||+|+|||++++.|......
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc
Confidence 368999999999999999999998753
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.40 E-value=0.00016 Score=47.04 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la 46 (174)
+..+.|.||+|+||||+++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999987
No 426
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.40 E-value=0.00053 Score=48.27 Aligned_cols=44 Identities=30% Similarity=0.432 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 4 ~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
|+++. ..+.+.++.. ....+++|.+|+|+|||.++-.++..+..
T Consensus 8 Q~~ai---~~i~~~~~~~-~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 8 QQEAI---ARIINSLENK-KEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHH---HHHHHHHHTT-SGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHH---HHHHHHHHhc-CCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 55555 4555555554 12369999999999999999987777754
No 427
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.40 E-value=0.00022 Score=56.56 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=28.4
Q ss_pred HHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 15 LGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 15 ~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
-+.+-.|..++..++++|+||+|||+++..+|..+
T Consensus 72 D~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 72 DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred HHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33444566677889999999999999999998766
No 428
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00015 Score=56.78 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
.-+.|.||+||||||+.|.+|-.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999954
No 429
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.39 E-value=0.00023 Score=57.82 Aligned_cols=36 Identities=28% Similarity=0.629 Sum_probs=29.3
Q ss_pred HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+-+.+-.|..++..++++||||+|||+++..+|...
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344445677777889999999999999999998765
No 430
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00017 Score=57.48 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|+||+|+||||++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999765
No 431
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.39 E-value=0.00061 Score=50.46 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+.+.||+|+||||+++.++..+..
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 457779999999999999999998843
No 432
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.38 E-value=0.00018 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
-++|.|++|+||||+++.|++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988
No 433
>PRK14974 cell division protein FtsY; Provisional
Probab=97.37 E-value=0.00023 Score=55.71 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.||||+||||++..+|..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999877
No 434
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.37 E-value=0.00018 Score=51.51 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.++|.||+|+||++++..|.+..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 579999999999999999999875
No 435
>PTZ00301 uridine kinase; Provisional
Probab=97.37 E-value=0.00018 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
-+-+.||||+||||+|+.|++.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 45689999999999999999876
No 436
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.36 E-value=0.00019 Score=57.50 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+.+++.|++|+|||||++.||+.+|..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3689999999999999999999998743
No 437
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.36 E-value=0.00027 Score=51.23 Aligned_cols=38 Identities=32% Similarity=0.586 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~ 63 (174)
|..+++.|+||+|||+++..+...++ ...++.++...+
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~-~~~~v~i~~D~~ 52 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFG-GGGIVVIDADEF 52 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT--TT-SEEE-GGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhcc-CCCeEEEehHHH
Confidence 47888999999999999999998873 123455554443
No 438
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.36 E-value=0.00014 Score=51.11 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=18.8
Q ss_pred EcCCCCcHHHHHHHHHHHhC
Q psy14616 31 AGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 31 ~GppG~GKT~la~~la~~l~ 50 (174)
.||||+||||+++.++..++
T Consensus 1 ~G~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC
Confidence 49999999999999999997
No 439
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.35 E-value=0.00019 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
+.+.|+||+||||+|+.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56889999999999999999984
No 440
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.35 E-value=0.00034 Score=40.82 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
...+|+||+|+||||+.-++.-.|
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998877
No 441
>PRK08356 hypothetical protein; Provisional
Probab=97.35 E-value=0.00018 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++|+||||+||||+|+.|++ .|
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g 29 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KG 29 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CC
Confidence 4678999999999999999964 55
No 442
>PF13479 AAA_24: AAA domain
Probab=97.35 E-value=0.00013 Score=53.53 Aligned_cols=20 Identities=50% Similarity=0.828 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGL 45 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~l 45 (174)
..+++|||||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 57899999999999999988
No 443
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.34 E-value=0.00023 Score=51.56 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.|++|+||||+++.++..+.
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46888999999999999999999873
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.34 E-value=0.00049 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++++.||||+||||+.+.++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 59999999999999999999988753
No 445
>PLN02840 tRNA dimethylallyltransferase
Probab=97.34 E-value=0.0003 Score=56.35 Aligned_cols=27 Identities=33% Similarity=0.703 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..+++.||+|+|||++|..||+.++..
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~ 48 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGE 48 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence 468899999999999999999999743
No 446
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.0006 Score=50.79 Aligned_cols=28 Identities=43% Similarity=0.585 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+.-+|+-|+|||||||+|.-+|+.||.+
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLgI~ 116 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLGIR 116 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcCCc
Confidence 3678888999999999999999999865
No 447
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.33 E-value=0.00035 Score=52.51 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~ 63 (174)
+..+.+.||.|+|||||.++++..+....--+.+.+..+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 467889999999999999999998864433345554443
No 448
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.33 E-value=0.00048 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+++++|++|+||||++++++..+
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4699999999999999999999864
No 449
>PRK05439 pantothenate kinase; Provisional
Probab=97.33 E-value=0.00069 Score=52.42 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.|+||+||||+|+.|+..++
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4666899999999999999998774
No 450
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.32 E-value=0.00032 Score=54.50 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=24.4
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|...+..+.++||||+|||++|..++...
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~ 79 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEA 79 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455556788899999999999999887544
No 451
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.32 E-value=0.00028 Score=59.77 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..++++||||||||+++..+...+
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~ 197 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQL 197 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 478899999999998877766543
No 452
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.32 E-value=0.00033 Score=57.04 Aligned_cols=36 Identities=31% Similarity=0.609 Sum_probs=29.1
Q ss_pred HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+-+.+-.|..++..+++.|+||+|||+++..+|..+
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~ 118 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL 118 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 334445677777899999999999999999998766
No 453
>PRK13764 ATPase; Provisional
Probab=97.32 E-value=0.00022 Score=59.70 Aligned_cols=27 Identities=41% Similarity=0.694 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|++||||+||||++.+++..++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999999998853
No 454
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.32 E-value=0.00051 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||||+||||++..++..+
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999876
No 455
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.31 E-value=0.00027 Score=46.48 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
.+++.|++|+|||+|.+.++..-
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999754
No 456
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.31 E-value=0.00029 Score=54.80 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=25.2
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..|...+..++++||||+|||+++..+|...
T Consensus 96 ~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 96 GGGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred cCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 3455556788899999999999999998653
No 457
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.30 E-value=0.00033 Score=57.90 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=27.9
Q ss_pred HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+-+.+..|..++..+|++|+||+|||+++..++..
T Consensus 20 LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~ 54 (509)
T PRK09302 20 FDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVN 54 (509)
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 33444567777889999999999999999988753
No 458
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.30 E-value=0.00022 Score=48.18 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..+.+.||+|+||||+.++++...
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 35689999999999999999998655
No 459
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.29 E-value=0.00025 Score=57.36 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+..++++|+||+||||+|..+|..+|..
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 4788899999999999999999999753
No 460
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.29 E-value=0.00024 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
+-+.||+|+||||+|+.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999884
No 461
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.28 E-value=0.00032 Score=50.09 Aligned_cols=26 Identities=42% Similarity=0.657 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..+++.|+||+||||+++.++..+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688899999999999999999987
No 462
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.28 E-value=0.00046 Score=48.25 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++.++|.|++|+|||||+..|....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3699999999999999999988653
No 463
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.28 E-value=0.00037 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+++.||+|+|||++|..+|+.++.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~ 25 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNA 25 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 678999999999999999999873
No 464
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00051 Score=54.70 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++.++|.||+|+||||++..||..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 3688999999999999999999877
No 465
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.27 E-value=0.00029 Score=46.92 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++++++||+|+|||+++..++..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3789999999999999888887764
No 466
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00026 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+..+.+.||+|+||||+.|++...
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999999753
No 467
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.27 E-value=0.0006 Score=52.83 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+.++++.||+|+||||++++++..+..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 3469999999999999999999987743
No 468
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.26 E-value=0.00038 Score=51.49 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..+.+.||+|+|||++++.+|+.+|..
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~ 31 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFH 31 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 467899999999999999999999843
No 469
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.25 E-value=0.00063 Score=47.91 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+..+++.||+||||+++.+.+|.....+
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 5688999999999999999999876433
No 470
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.25 E-value=0.0054 Score=49.24 Aligned_cols=114 Identities=19% Similarity=0.143 Sum_probs=61.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhh---hhhhhhccC---cEEEEEEeccCCCCCCccce
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKT---EEETEMIEG---EVVEIQIERPATGLGSKVGK 100 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~i~~~~id~~~~~~~~~~~~ 100 (174)
.++++||-+|||||+.+.+.+.+-.. .+.++..+......... ....+.... -+++||++.. .+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~--~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v-~~------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE--IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV-PD------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc--eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc-hh-------
Confidence 88999999999999998888776433 33344333322221111 111222322 2344444433 11
Q ss_pred eEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcceeeEecCCCCHHHHHH
Q psy14616 101 LTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQA 155 (174)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~~~i~~~~~~~~e~~~ 155 (174)
-...+....|..+.-+ +.++.+.. ....+.+..|...+.+.|++-.|...
T Consensus 109 ---W~~~lk~l~d~~~~~v--~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ---WERALKYLYDRGNLDV--LITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ---HHHHHHHHHccccceE--EEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 0111223333333211 22222222 44678888999999999999888765
No 471
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.24 E-value=0.0038 Score=48.23 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHhcCcC-CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 4 QLQARRAAGVVLGMIKEGKIA-GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 4 ~~~~~~~l~~~~~~~~~g~~~-~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.++.+..+..+....-.+..+ ...++|+|+.|+|||++...+...+|..
T Consensus 54 d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~ 103 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDY 103 (304)
T ss_pred CHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChh
Confidence 334555555555544444333 3567789999999999999999888743
No 472
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.24 E-value=0.00033 Score=52.58 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++.+++.||+|+|||++++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 679999999999999999999988754
No 473
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.23 E-value=0.00035 Score=49.80 Aligned_cols=22 Identities=45% Similarity=0.649 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
+.++|++|+||||+++.+++ +|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g 23 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LG 23 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CC
Confidence 67999999999999999998 66
No 474
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.23 E-value=0.0004 Score=57.04 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=23.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+++|.|+||+||||+++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~ 27 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQ 27 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 58899999999999999999999843
No 475
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.22 E-value=0.00099 Score=52.06 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+-+.||||+||||++..++..+
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 456699999999999999988776
No 476
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.22 E-value=0.00036 Score=50.76 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+++.||+|||||++|-+.|..+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 478899999999999999998654
No 477
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.00034 Score=56.47 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.||+|+||||++..||..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999888655
No 478
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.21 E-value=0.00042 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..++|.|+||+||||+++.+|+.||.+
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~ 33 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLP 33 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999999999999999954
No 479
>PRK15453 phosphoribulokinase; Provisional
Probab=97.21 E-value=0.00054 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+.+.|.||+||||+++++++.++.
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47889999999999999999988853
No 480
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.20 E-value=0.00042 Score=54.06 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
...+++.|+||+||||+++.|++.++..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~ 189 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTT 189 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 3589999999999999999999988754
No 481
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.20 E-value=0.00039 Score=52.67 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=25.4
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..+++.||||+|||+++..+|..+
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466667789999999999999999888764
No 482
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.20 E-value=0.00036 Score=54.72 Aligned_cols=29 Identities=24% Similarity=0.146 Sum_probs=23.5
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~ 47 (174)
..|...+....++||||+|||.++..+|-
T Consensus 120 gGGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 120 GGGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred CCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 34555566778999999999999998874
No 483
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0004 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.-+-+.||+||||||+.+.+|-..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999654
No 484
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.19 E-value=0.00035 Score=47.83 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
+-++|.||.|+|||||+++|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999999864
No 485
>PRK10867 signal recognition particle protein; Provisional
Probab=97.19 E-value=0.00032 Score=56.68 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|+||+|+||||++-.+|..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4678899999999999988888766
No 486
>KOG1803|consensus
Probab=97.18 E-value=0.00038 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKT-AIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT-~la~~la~~l 49 (174)
..++++|||||||| |++..+.+.+
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~qlv 226 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEIISQLV 226 (649)
T ss_pred CceEeeCCCCCCceeeHHHHHHHHH
Confidence 47889999999999 5666666655
No 487
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.18 E-value=0.00042 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.-+.|.||+|+||||+++.|++.++
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999873
No 488
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.18 E-value=0.00054 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~ 50 (174)
.+|.|+||+||||+++.++..+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 489
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.00046 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..++|.||+|+||||++..+|...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999654
No 490
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0021 Score=53.01 Aligned_cols=134 Identities=28% Similarity=0.347 Sum_probs=75.9
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-hhccCcEEEEEEeccC
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-EMIEGEVVEIQIERPA 91 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~i~~~~id~~~ 91 (174)
.+..+++.++++||||+|||.+++++|.. +. .+...+...+.+...+..+ ..+ ...++.+.++++|...
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~ 89 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GA--EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALA 89 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-cC--cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcc
Confidence 35566789999999999999999999998 32 2345555555555555544 122 2235677777888774
Q ss_pred CCCCC-cccee-EEE---eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHH
Q psy14616 92 TGLGS-KVGKL-TMK---TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIR 160 (174)
Q Consensus 92 ~~~~~-~~~~~-~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~ 160 (174)
..... ..... ... ...+.... ...... ++ .++++..++++++ .|+ ..+.+..+......++++..
T Consensus 90 ~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~--~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 162 (494)
T COG0464 90 PKRSSDQGEVERRVVAQLLALMDGLK-RGQVIV--IG-ATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIH 162 (494)
T ss_pred cCccccccchhhHHHHHHHHhccccc-CCceEE--Ee-ecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHH
Confidence 43311 00000 000 00011111 122222 44 5578888888877 677 55666666655455665554
No 491
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.17 E-value=0.0011 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|+||+|+||||++..+|..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999877
No 492
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.16 E-value=0.00043 Score=49.71 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+.+.|++|+||||+++.|++.++.
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999998764
No 493
>PRK04296 thymidine kinase; Provisional
Probab=97.16 E-value=0.00043 Score=49.84 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
.-.+++||||+||||++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 457889999999999999888766
No 494
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00058 Score=52.55 Aligned_cols=27 Identities=44% Similarity=0.776 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..++++||+++|||.+|-.||+.+|.+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~e 30 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGE 30 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence 578999999999999999999999854
No 495
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.16 E-value=0.00044 Score=54.63 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++..++.||||||||++++.+++.+..
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 578899999999999999999998743
No 496
>PLN02796 D-glycerate 3-kinase
Probab=97.15 E-value=0.0012 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.-+-+.||+|+||||+++.|+..+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3466899999999999999998884
No 497
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.15 E-value=0.00037 Score=54.04 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=23.7
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~ 47 (174)
..|...+....++||||+|||+++..+|-
T Consensus 90 gGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 90 GGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 44555567888999999999999998874
No 498
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.15 E-value=0.00045 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..+.+.||+|+|||||.+.++..+.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 356888999999999999999997653
No 499
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.14 E-value=0.0012 Score=49.63 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 6 QARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 6 ~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
.+...+..+....+.....+..++|.|++|+|||+++.++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 12 AAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred HHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3444455555555555555679999999999999999998753
No 500
>PRK13695 putative NTPase; Provisional
Probab=97.14 E-value=0.00051 Score=48.63 Aligned_cols=23 Identities=39% Similarity=0.731 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
.++|.|++|+||||+++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988776
Done!