Query psy14616
Match_columns 174
No_of_seqs 121 out of 1292
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 16:17:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.9 2.1E-23 7E-28 163.4 11.4 160 1-165 150-336 (405)
2 4b4t_I 26S protease regulatory 99.9 9E-23 3.1E-27 160.4 11.0 160 1-165 184-370 (437)
3 4b4t_M 26S protease regulatory 99.9 7.4E-23 2.5E-27 162.1 10.0 159 1-164 183-368 (434)
4 4b4t_H 26S protease regulatory 99.9 1.3E-22 4.4E-27 160.9 10.8 159 1-164 211-396 (467)
5 4b4t_L 26S protease subunit RP 99.9 2.1E-22 7.1E-27 159.7 11.4 159 1-164 183-368 (437)
6 4b4t_K 26S protease regulatory 99.9 5.3E-22 1.8E-26 157.1 9.4 159 1-164 174-360 (428)
7 3uk6_A RUVB-like 2; hexameric 99.8 8.9E-20 3E-24 142.1 12.9 155 1-163 46-274 (368)
8 3eie_A Vacuolar protein sortin 99.8 3.4E-20 1.2E-24 142.6 8.2 158 1-163 20-199 (322)
9 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.5E-19 5.2E-24 139.0 8.6 159 1-163 14-194 (322)
10 2c9o_A RUVB-like 1; hexameric 99.8 1.9E-18 6.6E-23 138.5 14.5 90 1-90 39-138 (456)
11 3cf2_A TER ATPase, transitiona 99.8 1E-19 3.4E-24 153.4 6.8 159 1-164 206-388 (806)
12 3m6a_A ATP-dependent protease 99.8 2.7E-18 9.2E-23 140.3 13.6 160 1-165 83-270 (543)
13 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.2E-18 4.1E-23 129.7 9.3 156 1-163 8-192 (262)
14 2zan_A Vacuolar protein sortin 99.8 5.4E-19 1.9E-23 141.3 7.9 158 1-163 136-316 (444)
15 2qp9_X Vacuolar protein sortin 99.8 3.4E-19 1.2E-23 138.7 6.4 158 1-163 53-232 (355)
16 3cf0_A Transitional endoplasmi 99.8 5.2E-19 1.8E-23 134.8 6.8 159 1-164 17-202 (301)
17 3pvs_A Replication-associated 99.8 1.9E-18 6.6E-23 138.0 10.2 148 1-163 28-180 (447)
18 3cf2_A TER ATPase, transitiona 99.8 3.4E-20 1.2E-24 156.2 -0.9 160 1-165 479-665 (806)
19 3vfd_A Spastin; ATPase, microt 99.7 3.2E-18 1.1E-22 134.7 9.0 158 1-163 117-297 (389)
20 3h4m_A Proteasome-activating n 99.7 4E-18 1.4E-22 128.5 8.7 158 1-163 19-203 (285)
21 3syl_A Protein CBBX; photosynt 99.7 2.5E-18 8.6E-23 130.9 6.7 159 1-163 33-219 (309)
22 3b9p_A CG5977-PA, isoform A; A 99.7 1.1E-17 3.8E-22 126.8 9.5 158 1-163 23-204 (297)
23 2ce7_A Cell division protein F 99.7 2.4E-17 8.2E-22 132.3 10.5 159 1-164 18-202 (476)
24 1lv7_A FTSH; alpha/beta domain 99.7 1.8E-17 6.3E-22 123.3 8.5 158 1-163 14-197 (257)
25 3d8b_A Fidgetin-like protein 1 99.7 1.3E-17 4.4E-22 129.9 7.8 158 1-163 86-266 (357)
26 3pfi_A Holliday junction ATP-d 99.7 2.6E-17 8.8E-22 126.9 9.0 156 1-163 31-199 (338)
27 2r62_A Cell division protease 99.7 7.5E-18 2.6E-22 126.0 5.2 158 1-163 13-198 (268)
28 3hu3_A Transitional endoplasmi 99.7 2.3E-17 7.9E-22 133.1 8.0 158 1-163 206-387 (489)
29 3t15_A Ribulose bisphosphate c 99.7 4.4E-17 1.5E-21 123.7 7.4 134 23-163 34-200 (293)
30 1ofh_A ATP-dependent HSL prote 99.7 2.5E-16 8.7E-21 119.6 11.5 154 1-159 17-213 (310)
31 3u61_B DNA polymerase accessor 99.7 7.7E-17 2.6E-21 123.6 7.9 142 1-160 28-177 (324)
32 2x8a_A Nuclear valosin-contain 99.6 6.7E-16 2.3E-20 116.1 9.8 158 1-162 12-192 (274)
33 2dhr_A FTSH; AAA+ protein, hex 99.6 7.2E-16 2.4E-20 124.4 10.0 158 1-162 33-215 (499)
34 3pxi_A Negative regulator of g 99.6 8.5E-16 2.9E-20 130.0 10.4 157 1-163 493-677 (758)
35 1g41_A Heat shock protein HSLU 99.6 2.5E-15 8.5E-20 119.4 11.4 61 1-63 17-86 (444)
36 3hws_A ATP-dependent CLP prote 99.6 9.5E-16 3.2E-20 119.5 8.9 90 1-92 17-130 (363)
37 4fcw_A Chaperone protein CLPB; 99.6 1.8E-15 6.2E-20 115.1 9.7 155 1-163 19-231 (311)
38 1r6b_X CLPA protein; AAA+, N-t 99.6 3.8E-15 1.3E-19 126.0 12.0 152 1-162 460-667 (758)
39 1a5t_A Delta prime, HOLB; zinc 99.6 2.7E-15 9.3E-20 115.8 10.0 137 11-161 11-180 (334)
40 1hqc_A RUVB; extended AAA-ATPa 99.6 1.6E-15 5.5E-20 116.0 7.4 151 1-162 14-182 (324)
41 1um8_A ATP-dependent CLP prote 99.6 9.5E-15 3.2E-19 114.3 11.8 61 1-63 23-108 (376)
42 1iqp_A RFCS; clamp loader, ext 99.6 2.1E-15 7E-20 115.3 7.4 145 1-163 27-184 (327)
43 1jbk_A CLPB protein; beta barr 99.6 6.6E-16 2.3E-20 109.0 4.3 147 1-157 24-194 (195)
44 1jr3_A DNA polymerase III subu 99.6 8.5E-15 2.9E-19 113.9 10.5 146 1-163 18-193 (373)
45 1ypw_A Transitional endoplasmi 99.6 1E-17 3.5E-22 142.3 -6.5 159 1-164 479-664 (806)
46 1ixz_A ATP-dependent metallopr 99.6 3.2E-15 1.1E-19 111.0 7.6 158 1-162 18-200 (254)
47 3pxg_A Negative regulator of g 99.6 1.4E-14 4.7E-19 116.5 11.7 140 1-163 182-340 (468)
48 1sxj_A Activator 1 95 kDa subu 99.6 1E-14 3.5E-19 118.5 11.0 152 1-163 41-224 (516)
49 2r44_A Uncharacterized protein 99.6 3.7E-15 1.3E-19 114.6 7.8 148 1-163 29-200 (331)
50 2chg_A Replication factor C sm 99.6 5.9E-15 2E-19 106.3 8.3 144 1-162 19-175 (226)
51 2chq_A Replication factor C sm 99.6 3.6E-15 1.2E-19 113.5 7.5 145 1-163 19-176 (319)
52 1sxj_B Activator 1 37 kDa subu 99.6 4.1E-15 1.4E-19 113.4 7.3 144 1-162 23-180 (323)
53 1iy2_A ATP-dependent metallopr 99.6 9.1E-15 3.1E-19 110.0 8.7 158 1-162 42-224 (278)
54 1sxj_C Activator 1 40 kDa subu 99.6 7.6E-15 2.6E-19 113.4 8.2 144 1-162 27-183 (340)
55 2gno_A DNA polymerase III, gam 99.6 1.9E-15 6.3E-20 115.3 4.2 139 3-161 1-152 (305)
56 3te6_A Regulatory protein SIR3 99.5 2.8E-15 9.4E-20 114.6 3.9 152 3-163 24-213 (318)
57 1d2n_A N-ethylmaleimide-sensit 99.5 3.4E-15 1.2E-19 111.9 4.0 153 1-159 35-210 (272)
58 1njg_A DNA polymerase III subu 99.5 4.4E-14 1.5E-18 102.9 9.8 146 1-163 25-200 (250)
59 1sxj_D Activator 1 41 kDa subu 99.5 5.6E-15 1.9E-19 114.1 5.0 145 1-163 39-207 (353)
60 1sxj_E Activator 1 40 kDa subu 99.5 2.6E-14 9.1E-19 110.6 8.4 41 122-163 168-208 (354)
61 2qby_B CDC6 homolog 3, cell di 99.5 3.2E-14 1.1E-18 111.0 8.6 151 1-162 22-211 (384)
62 3pxi_A Negative regulator of g 99.5 1.6E-13 5.5E-18 116.1 12.2 140 1-163 182-340 (758)
63 1l8q_A Chromosomal replication 99.5 5.8E-14 2E-18 107.7 8.4 144 12-163 24-181 (324)
64 1ypw_A Transitional endoplasmi 99.5 3E-14 1E-18 121.1 6.5 157 1-162 206-386 (806)
65 1qvr_A CLPB protein; coiled co 99.5 6.5E-14 2.2E-18 119.9 7.5 156 1-163 560-772 (854)
66 1in4_A RUVB, holliday junction 99.5 3.8E-13 1.3E-17 103.7 11.0 152 1-162 27-194 (334)
67 3bos_A Putative DNA replicatio 99.5 2.6E-13 9E-18 99.1 8.7 140 12-162 41-188 (242)
68 1qvr_A CLPB protein; coiled co 99.4 8.2E-14 2.8E-18 119.3 6.6 153 1-162 172-346 (854)
69 2p65_A Hypothetical protein PF 99.4 6.5E-14 2.2E-18 98.4 4.4 140 1-149 24-187 (187)
70 2v1u_A Cell division control p 99.4 1.1E-13 3.6E-18 107.9 5.6 154 1-162 21-215 (387)
71 2z4s_A Chromosomal replication 99.4 2.2E-13 7.5E-18 108.7 7.4 153 2-163 109-278 (440)
72 3co5_A Putative two-component 99.4 2.5E-14 8.5E-19 97.5 -0.2 131 1-148 6-142 (143)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 4.6E-13 1.6E-17 108.2 7.2 147 1-161 24-196 (500)
74 2bjv_A PSP operon transcriptio 99.4 1.3E-12 4.4E-17 97.4 8.7 153 1-163 8-196 (265)
75 1g8p_A Magnesium-chelatase 38 99.4 6.9E-13 2.4E-17 102.3 7.3 46 1-51 26-71 (350)
76 3n70_A Transport activator; si 99.4 1.1E-12 3.9E-17 89.4 6.4 132 1-148 3-144 (145)
77 1r6b_X CLPA protein; AAA+, N-t 99.3 1.2E-12 4.2E-17 110.7 7.3 154 1-162 188-363 (758)
78 1ojl_A Transcriptional regulat 99.3 1.1E-11 3.9E-16 94.3 8.7 153 1-162 4-191 (304)
79 3f9v_A Minichromosome maintena 99.3 7.8E-13 2.7E-17 109.1 1.5 48 1-51 297-353 (595)
80 2qby_A CDC6 homolog 1, cell di 99.3 2.4E-12 8E-17 100.1 3.9 153 1-162 22-211 (386)
81 1fnn_A CDC6P, cell division co 99.3 3.4E-11 1.2E-15 93.8 10.2 154 1-163 19-208 (389)
82 1u0j_A DNA replication protein 99.1 2.9E-10 9.8E-15 84.6 9.3 40 11-50 90-129 (267)
83 4akg_A Glutathione S-transfera 99.0 3.3E-09 1.1E-13 98.9 11.8 133 25-162 1267-1432(2695)
84 3f8t_A Predicted ATPase involv 98.7 7.9E-09 2.7E-13 82.4 4.4 46 1-50 215-264 (506)
85 1tue_A Replication protein E1; 98.6 4.2E-08 1.4E-12 70.2 5.6 42 8-50 42-83 (212)
86 2w58_A DNAI, primosome compone 98.6 6.6E-08 2.3E-12 68.8 6.6 54 9-62 36-92 (202)
87 3dzd_A Transcriptional regulat 98.6 9E-08 3.1E-12 74.6 7.6 156 1-163 131-318 (368)
88 2kjq_A DNAA-related protein; s 98.6 3.1E-08 1.1E-12 67.6 4.0 26 24-49 35-60 (149)
89 4akg_A Glutathione S-transfera 98.6 1.5E-07 5.3E-12 88.0 9.6 139 10-158 634-790 (2695)
90 3ec2_A DNA replication protein 98.6 1.1E-07 3.8E-12 66.5 6.4 41 9-49 21-62 (180)
91 3vkg_A Dynein heavy chain, cyt 98.5 1E-06 3.6E-11 83.3 11.6 132 25-161 1304-1469(3245)
92 3k1j_A LON protease, ATP-depen 98.4 1.9E-07 6.5E-12 77.2 5.6 45 1-52 43-87 (604)
93 2qgz_A Helicase loader, putati 98.4 4.3E-07 1.5E-11 69.1 7.1 41 10-50 136-177 (308)
94 1jr3_D DNA polymerase III, del 98.4 1.8E-07 6.1E-12 72.0 3.6 133 15-164 10-158 (343)
95 1w5s_A Origin recognition comp 98.3 8.8E-07 3E-11 69.3 5.5 49 1-50 24-77 (412)
96 1ny5_A Transcriptional regulat 98.3 4.1E-06 1.4E-10 65.6 9.2 133 25-163 160-327 (387)
97 1qhx_A CPT, protein (chloramph 98.3 1.1E-06 3.6E-11 61.1 4.9 26 26-51 4-29 (178)
98 3trf_A Shikimate kinase, SK; a 98.2 9E-07 3.1E-11 61.9 4.4 28 25-52 5-32 (185)
99 1gvn_B Zeta; postsegregational 98.2 5.2E-06 1.8E-10 62.5 7.4 46 5-50 10-58 (287)
100 3vaa_A Shikimate kinase, SK; s 98.2 1.6E-06 5.6E-11 61.5 4.4 29 24-52 24-52 (199)
101 3umf_A Adenylate kinase; rossm 98.2 1.6E-06 5.4E-11 62.7 4.2 39 25-67 29-67 (217)
102 3sr0_A Adenylate kinase; phosp 98.1 1.8E-06 6.3E-11 61.9 3.9 37 27-67 2-38 (206)
103 2p5t_B PEZT; postsegregational 98.1 5.6E-06 1.9E-10 61.0 6.5 47 5-51 9-58 (253)
104 3tlx_A Adenylate kinase 2; str 98.1 5.3E-06 1.8E-10 60.9 6.2 27 24-50 28-54 (243)
105 2rhm_A Putative kinase; P-loop 98.1 2.5E-06 8.6E-11 59.9 4.1 27 25-51 5-31 (193)
106 1zuh_A Shikimate kinase; alpha 98.1 2.6E-06 9E-11 58.7 4.2 28 25-52 7-34 (168)
107 3kb2_A SPBC2 prophage-derived 98.1 2.4E-06 8.1E-11 58.8 3.8 25 27-51 3-27 (173)
108 1kag_A SKI, shikimate kinase I 98.1 2.5E-06 8.5E-11 58.9 3.8 26 26-51 5-30 (173)
109 3iij_A Coilin-interacting nucl 98.1 2.4E-06 8.4E-11 59.5 3.8 27 25-51 11-37 (180)
110 3be4_A Adenylate kinase; malar 98.1 2.8E-06 9.5E-11 61.2 4.1 28 24-51 4-31 (217)
111 3vkg_A Dynein heavy chain, cyt 98.1 8.3E-06 2.8E-10 77.4 8.1 126 26-159 605-751 (3245)
112 2qen_A Walker-type ATPase; unk 98.1 6.3E-06 2.2E-10 62.8 6.1 43 1-50 14-56 (350)
113 1via_A Shikimate kinase; struc 98.0 2.9E-06 9.9E-11 58.9 3.7 25 27-51 6-30 (175)
114 1kht_A Adenylate kinase; phosp 98.0 2.7E-06 9.1E-11 59.6 3.3 25 26-50 4-28 (192)
115 2iyv_A Shikimate kinase, SK; t 98.0 3.9E-06 1.3E-10 58.6 4.1 26 26-51 3-28 (184)
116 2vhj_A Ntpase P4, P4; non- hyd 98.0 3.5E-06 1.2E-10 64.3 3.5 38 21-58 119-156 (331)
117 3cm0_A Adenylate kinase; ATP-b 98.0 3.5E-06 1.2E-10 58.9 3.3 26 26-51 5-30 (186)
118 2ga8_A Hypothetical 39.9 kDa p 98.0 5.3E-06 1.8E-10 64.1 4.6 48 2-51 2-50 (359)
119 1ly1_A Polynucleotide kinase; 98.0 3.7E-06 1.3E-10 58.3 3.4 25 26-50 3-28 (181)
120 2cdn_A Adenylate kinase; phosp 98.0 5.8E-06 2E-10 58.6 4.3 27 25-51 20-46 (201)
121 1tev_A UMP-CMP kinase; ploop, 98.0 5E-06 1.7E-10 58.3 3.9 27 25-51 3-29 (196)
122 2ze6_A Isopentenyl transferase 98.0 6.9E-06 2.4E-10 60.6 4.8 25 27-51 3-27 (253)
123 1aky_A Adenylate kinase; ATP:A 98.0 5.6E-06 1.9E-10 59.6 4.2 27 25-51 4-30 (220)
124 2c95_A Adenylate kinase 1; tra 98.0 5.3E-06 1.8E-10 58.3 3.9 27 25-51 9-35 (196)
125 1y63_A LMAJ004144AAA protein; 98.0 5.5E-06 1.9E-10 58.1 3.9 26 25-50 10-36 (184)
126 1knq_A Gluconate kinase; ALFA/ 98.0 6E-06 2E-10 57.2 4.1 27 24-50 7-33 (175)
127 2r2a_A Uncharacterized protein 98.0 1.2E-05 4.1E-10 57.3 5.6 23 26-48 6-28 (199)
128 3t61_A Gluconokinase; PSI-biol 98.0 5.3E-06 1.8E-10 58.9 3.7 26 26-51 19-44 (202)
129 2bwj_A Adenylate kinase 5; pho 98.0 5.7E-06 2E-10 58.3 3.9 26 25-50 12-37 (199)
130 1zak_A Adenylate kinase; ATP:A 98.0 5.3E-06 1.8E-10 59.8 3.7 27 25-51 5-31 (222)
131 1e6c_A Shikimate kinase; phosp 97.9 6.4E-06 2.2E-10 56.8 3.8 26 26-51 3-28 (173)
132 1zd8_A GTP:AMP phosphotransfer 97.9 6.1E-06 2.1E-10 59.7 3.8 27 25-51 7-33 (227)
133 1nks_A Adenylate kinase; therm 97.9 4.1E-06 1.4E-10 58.6 2.8 24 27-50 3-26 (194)
134 2vli_A Antibiotic resistance p 97.9 4E-06 1.4E-10 58.3 2.7 28 25-52 5-32 (183)
135 2fna_A Conserved hypothetical 97.9 9.9E-06 3.4E-10 61.9 5.1 43 1-52 15-57 (357)
136 4eun_A Thermoresistant glucoki 97.9 7.6E-06 2.6E-10 58.1 4.2 26 25-50 29-54 (200)
137 2plr_A DTMP kinase, probable t 97.9 6.6E-06 2.2E-10 58.5 3.8 26 26-51 5-30 (213)
138 1kgd_A CASK, peripheral plasma 97.9 7.6E-06 2.6E-10 57.2 4.0 28 23-50 3-30 (180)
139 1qf9_A UMP/CMP kinase, protein 97.9 7.1E-06 2.4E-10 57.4 3.8 25 26-50 7-31 (194)
140 1ak2_A Adenylate kinase isoenz 97.9 7.6E-06 2.6E-10 59.5 4.0 27 25-51 16-42 (233)
141 3dl0_A Adenylate kinase; phosp 97.9 6.9E-06 2.3E-10 58.9 3.6 25 27-51 2-26 (216)
142 2qor_A Guanylate kinase; phosp 97.9 8E-06 2.7E-10 58.1 3.8 27 24-50 11-37 (204)
143 3fb4_A Adenylate kinase; psych 97.9 7.8E-06 2.7E-10 58.5 3.8 25 27-51 2-26 (216)
144 3lw7_A Adenylate kinase relate 97.9 8.1E-06 2.8E-10 56.0 3.6 24 27-51 3-26 (179)
145 2pez_A Bifunctional 3'-phospho 97.9 1.7E-05 5.8E-10 55.1 5.0 26 24-49 4-29 (179)
146 3uie_A Adenylyl-sulfate kinase 97.9 1E-05 3.4E-10 57.4 3.8 27 24-50 24-50 (200)
147 2bbw_A Adenylate kinase 4, AK4 97.9 1.1E-05 3.8E-10 59.1 4.0 28 25-52 27-54 (246)
148 1ukz_A Uridylate kinase; trans 97.9 1E-05 3.4E-10 57.4 3.7 25 26-50 16-40 (203)
149 2jaq_A Deoxyguanosine kinase; 97.9 1.1E-05 3.7E-10 57.0 3.8 25 27-51 2-26 (205)
150 2pt5_A Shikimate kinase, SK; a 97.9 1.1E-05 3.9E-10 55.3 3.8 25 27-51 2-26 (168)
151 3upu_A ATP-dependent DNA helic 97.8 2.3E-05 7.8E-10 62.7 5.9 41 3-49 29-69 (459)
152 2wwf_A Thymidilate kinase, put 97.8 9.2E-06 3.1E-10 57.8 3.2 27 25-51 10-36 (212)
153 1zp6_A Hypothetical protein AT 97.8 1.2E-05 4E-10 56.4 3.6 27 24-50 8-34 (191)
154 1e4v_A Adenylate kinase; trans 97.8 1.3E-05 4.5E-10 57.4 3.7 25 27-51 2-26 (214)
155 1cke_A CK, MSSA, protein (cyti 97.8 1.5E-05 5E-10 57.4 3.9 25 26-50 6-30 (227)
156 3c8u_A Fructokinase; YP_612366 97.8 2E-05 6.8E-10 56.3 4.4 39 12-50 9-47 (208)
157 1nn5_A Similar to deoxythymidy 97.8 1.2E-05 4.2E-10 57.2 3.2 26 25-50 9-34 (215)
158 3crm_A TRNA delta(2)-isopenten 97.8 2E-05 6.7E-10 60.2 4.3 25 26-50 6-30 (323)
159 2xb4_A Adenylate kinase; ATP-b 97.8 1.7E-05 5.8E-10 57.3 3.8 24 27-50 2-25 (223)
160 3tau_A Guanylate kinase, GMP k 97.8 1.6E-05 5.5E-10 56.8 3.5 27 24-50 7-33 (208)
161 1svm_A Large T antigen; AAA+ f 97.8 4.7E-05 1.6E-09 59.4 6.3 31 21-51 165-195 (377)
162 3r20_A Cytidylate kinase; stru 97.8 2.1E-05 7.3E-10 57.4 4.0 25 26-50 10-34 (233)
163 2yvu_A Probable adenylyl-sulfa 97.7 2.1E-05 7.1E-10 55.0 3.7 26 25-50 13-38 (186)
164 2v54_A DTMP kinase, thymidylat 97.7 2E-05 6.8E-10 55.7 3.5 25 25-49 4-28 (204)
165 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 2.1E-05 7.2E-10 58.2 3.7 24 26-49 5-28 (260)
166 2cvh_A DNA repair and recombin 97.7 2.4E-05 8.2E-10 55.9 3.9 31 20-50 15-45 (220)
167 1n0w_A DNA repair protein RAD5 97.7 2E-05 6.7E-10 57.2 3.4 30 19-48 18-47 (243)
168 4e22_A Cytidylate kinase; P-lo 97.7 2.6E-05 8.9E-10 57.5 4.0 27 25-51 27-53 (252)
169 1ye8_A Protein THEP1, hypothet 97.7 2.6E-05 9E-10 54.5 3.7 24 27-50 2-25 (178)
170 1ex7_A Guanylate kinase; subst 97.7 2.3E-05 7.9E-10 55.2 3.4 25 26-50 2-26 (186)
171 3nwj_A ATSK2; P loop, shikimat 97.7 2.6E-05 8.9E-10 57.5 3.8 27 25-51 48-74 (250)
172 2z0h_A DTMP kinase, thymidylat 97.7 2.7E-05 9.3E-10 54.6 3.7 26 27-52 2-30 (197)
173 1z6t_A APAF-1, apoptotic prote 97.7 4.9E-05 1.7E-09 62.4 5.7 44 1-47 126-169 (591)
174 2w0m_A SSO2452; RECA, SSPF, un 97.7 2E-05 6.7E-10 56.7 3.0 29 21-49 19-47 (235)
175 2pbr_A DTMP kinase, thymidylat 97.7 3E-05 1E-09 54.2 3.9 23 27-49 2-24 (195)
176 2dr3_A UPF0273 protein PH0284; 97.7 3.1E-05 1.1E-09 56.2 4.0 31 19-49 17-47 (247)
177 2j41_A Guanylate kinase; GMP, 97.7 2.6E-05 8.8E-10 55.2 3.4 25 25-49 6-30 (207)
178 2bdt_A BH3686; alpha-beta prot 97.7 2.5E-05 8.6E-10 54.7 3.2 25 26-50 3-27 (189)
179 3tr0_A Guanylate kinase, GMP k 97.7 3.7E-05 1.3E-09 54.3 3.9 25 25-49 7-31 (205)
180 3a8t_A Adenylate isopentenyltr 97.6 2.6E-05 9E-10 59.8 3.3 26 26-51 41-66 (339)
181 4a74_A DNA repair and recombin 97.6 3E-05 1E-09 55.7 3.4 31 19-49 19-49 (231)
182 3a00_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 53.9 3.5 25 26-50 2-26 (186)
183 3foz_A TRNA delta(2)-isopenten 97.6 4.7E-05 1.6E-09 57.8 4.1 26 25-50 10-35 (316)
184 3ney_A 55 kDa erythrocyte memb 97.6 4.5E-05 1.5E-09 54.2 3.8 27 24-50 18-44 (197)
185 1m7g_A Adenylylsulfate kinase; 97.6 4.3E-05 1.5E-09 54.6 3.7 26 25-50 25-50 (211)
186 1uj2_A Uridine-cytidine kinase 97.6 4.6E-05 1.6E-09 56.0 3.9 26 26-51 23-48 (252)
187 2if2_A Dephospho-COA kinase; a 97.6 4.3E-05 1.5E-09 54.1 3.6 23 27-50 3-25 (204)
188 1lvg_A Guanylate kinase, GMP k 97.6 4.5E-05 1.5E-09 54.1 3.6 25 25-49 4-28 (198)
189 1odf_A YGR205W, hypothetical 3 97.6 0.00014 4.8E-09 54.7 6.2 27 24-50 30-56 (290)
190 3ake_A Cytidylate kinase; CMP 97.6 5.7E-05 1.9E-09 53.5 3.7 25 27-51 4-28 (208)
191 3exa_A TRNA delta(2)-isopenten 97.5 6.3E-05 2.1E-09 57.2 4.1 25 26-50 4-28 (322)
192 2zts_A Putative uncharacterize 97.5 5.8E-05 2E-09 54.8 3.8 30 19-48 24-53 (251)
193 2ehv_A Hypothetical protein PH 97.5 5.3E-05 1.8E-09 55.1 3.4 26 21-46 26-51 (251)
194 1rz3_A Hypothetical protein rb 97.5 0.00017 5.8E-09 51.1 6.0 38 12-49 8-46 (201)
195 3bh0_A DNAB-like replicative h 97.5 9.2E-05 3.1E-09 56.3 4.8 30 20-49 63-92 (315)
196 1jjv_A Dephospho-COA kinase; P 97.5 5.6E-05 1.9E-09 53.6 3.3 24 27-51 4-27 (206)
197 1ltq_A Polynucleotide kinase; 97.5 6.1E-05 2.1E-09 56.6 3.6 24 26-49 3-26 (301)
198 1cr0_A DNA primase/helicase; R 97.5 0.00012 3.9E-09 55.0 4.9 30 20-49 30-59 (296)
199 2qmh_A HPR kinase/phosphorylas 97.5 5E-05 1.7E-09 54.0 2.7 26 25-50 34-59 (205)
200 3zvl_A Bifunctional polynucleo 97.5 7.1E-05 2.4E-09 59.2 3.8 26 25-50 258-283 (416)
201 4eaq_A DTMP kinase, thymidylat 97.5 8.4E-05 2.9E-09 54.0 3.8 27 25-51 26-52 (229)
202 3hr8_A Protein RECA; alpha and 97.5 8.3E-05 2.8E-09 57.6 3.9 29 21-49 57-85 (356)
203 1q3t_A Cytidylate kinase; nucl 97.5 0.0001 3.5E-09 53.6 4.2 27 24-50 15-41 (236)
204 1uf9_A TT1252 protein; P-loop, 97.5 0.0001 3.4E-09 51.9 4.0 24 26-50 9-32 (203)
205 1nlf_A Regulatory protein REPA 97.5 8.2E-05 2.8E-09 55.4 3.7 29 21-49 26-54 (279)
206 2qt1_A Nicotinamide riboside k 97.4 0.00011 3.9E-09 52.1 4.2 25 25-49 21-45 (207)
207 3asz_A Uridine kinase; cytidin 97.4 8.7E-05 3E-09 52.8 3.5 26 25-50 6-31 (211)
208 2z43_A DNA repair and recombin 97.4 8.6E-05 2.9E-09 56.7 3.7 30 20-49 102-131 (324)
209 4b3f_X DNA-binding protein smu 97.4 9.1E-05 3.1E-09 61.7 4.0 21 26-46 206-226 (646)
210 2zr9_A Protein RECA, recombina 97.4 8.1E-05 2.8E-09 57.5 3.5 29 21-49 57-85 (349)
211 1u94_A RECA protein, recombina 97.4 8.5E-05 2.9E-09 57.5 3.5 29 21-49 59-87 (356)
212 1htw_A HI0065; nucleotide-bind 97.4 0.00012 4E-09 50.2 3.8 26 24-49 32-57 (158)
213 1s96_A Guanylate kinase, GMP k 97.4 0.00012 4E-09 52.9 3.9 26 25-50 16-41 (219)
214 2grj_A Dephospho-COA kinase; T 97.4 0.00011 3.9E-09 51.9 3.8 25 27-51 14-38 (192)
215 2h92_A Cytidylate kinase; ross 97.4 0.00011 3.9E-09 52.5 3.8 25 26-50 4-28 (219)
216 1z6g_A Guanylate kinase; struc 97.4 0.00011 3.7E-09 52.9 3.7 25 25-49 23-47 (218)
217 1gtv_A TMK, thymidylate kinase 97.4 4E-05 1.4E-09 54.6 1.4 24 27-50 2-25 (214)
218 1vht_A Dephospho-COA kinase; s 97.4 0.00011 3.7E-09 52.6 3.7 24 26-50 5-28 (218)
219 1znw_A Guanylate kinase, GMP k 97.4 0.00012 4.2E-09 52.0 3.9 26 25-50 20-45 (207)
220 3eph_A TRNA isopentenyltransfe 97.4 0.00012 4E-09 57.6 3.8 26 26-51 3-28 (409)
221 3d3q_A TRNA delta(2)-isopenten 97.4 0.00011 3.9E-09 56.4 3.7 25 26-50 8-32 (340)
222 1v5w_A DMC1, meiotic recombina 97.4 0.00012 4.2E-09 56.3 3.9 29 20-48 117-145 (343)
223 1rj9_A FTSY, signal recognitio 97.4 0.00019 6.7E-09 54.3 4.9 26 25-50 102-127 (304)
224 4gp7_A Metallophosphoesterase; 97.4 0.00011 3.8E-09 50.8 3.2 21 25-45 9-29 (171)
225 2a5y_B CED-4; apoptosis; HET: 97.4 0.00027 9.4E-09 57.7 6.0 43 2-47 131-174 (549)
226 2i1q_A DNA repair and recombin 97.4 0.00011 3.8E-09 55.9 3.4 28 21-48 94-121 (322)
227 2q6t_A DNAB replication FORK h 97.4 0.00018 6.3E-09 57.2 4.8 30 20-49 195-224 (444)
228 2r8r_A Sensor protein; KDPD, P 97.4 0.00013 4.6E-09 52.8 3.6 24 26-49 7-30 (228)
229 2i3b_A HCR-ntpase, human cance 97.3 0.00015 5.1E-09 51.2 3.7 24 26-49 2-25 (189)
230 3cmu_A Protein RECA, recombina 97.3 0.00012 4.1E-09 67.5 3.9 29 21-49 1423-1451(2050)
231 3fdi_A Uncharacterized protein 97.3 0.00019 6.4E-09 51.1 4.2 27 26-52 7-33 (201)
232 4a1f_A DNAB helicase, replicat 97.3 0.00023 8E-09 54.7 5.0 30 20-49 41-70 (338)
233 2r6a_A DNAB helicase, replicat 97.3 0.00024 8.2E-09 56.7 5.0 30 20-49 198-227 (454)
234 3gmt_A Adenylate kinase; ssgci 97.3 0.00011 3.9E-09 53.3 2.9 35 27-65 10-44 (230)
235 2wsm_A Hydrogenase expression/ 97.3 0.00045 1.5E-08 49.2 6.0 25 26-50 31-55 (221)
236 1pzn_A RAD51, DNA repair and r 97.3 0.00022 7.5E-09 55.1 4.5 30 20-49 126-155 (349)
237 2eyu_A Twitching motility prot 97.3 0.00019 6.3E-09 53.2 3.8 26 24-49 24-49 (261)
238 3lda_A DNA repair protein RAD5 97.3 0.00014 4.9E-09 57.1 3.3 29 20-48 173-201 (400)
239 3lnc_A Guanylate kinase, GMP k 97.3 0.00011 3.7E-09 53.2 2.4 25 25-49 27-52 (231)
240 2f6r_A COA synthase, bifunctio 97.3 0.00018 6.2E-09 53.8 3.6 24 26-50 76-99 (281)
241 2hf9_A Probable hydrogenase ni 97.3 0.0011 3.9E-08 47.3 7.7 25 26-50 39-63 (226)
242 1xp8_A RECA protein, recombina 97.3 0.00017 5.7E-09 56.1 3.5 29 21-49 70-98 (366)
243 2jeo_A Uridine-cytidine kinase 97.3 0.00021 7.3E-09 52.2 3.8 26 25-50 25-50 (245)
244 2ged_A SR-beta, signal recogni 97.3 0.00037 1.3E-08 48.5 4.9 24 25-48 48-71 (193)
245 1g8f_A Sulfate adenylyltransfe 97.3 0.00023 7.8E-09 57.6 4.3 26 26-51 396-421 (511)
246 2orw_A Thymidine kinase; TMTK, 97.3 0.00023 7.9E-09 49.9 3.8 25 25-49 3-27 (184)
247 2px0_A Flagellar biosynthesis 97.2 0.00021 7.2E-09 53.9 3.7 25 25-49 105-129 (296)
248 3tqc_A Pantothenate kinase; bi 97.2 0.0008 2.7E-08 51.3 7.0 25 26-50 93-117 (321)
249 3e1s_A Exodeoxyribonuclease V, 97.2 0.00021 7E-09 58.8 3.9 24 26-49 205-228 (574)
250 3bgw_A DNAB-like replicative h 97.2 0.00032 1.1E-08 55.9 4.9 30 20-49 192-221 (444)
251 3kl4_A SRP54, signal recogniti 97.2 0.00043 1.5E-08 55.0 5.6 25 25-49 97-121 (433)
252 1vma_A Cell division protein F 97.2 0.00023 7.9E-09 54.0 3.8 25 25-49 104-128 (306)
253 2v9p_A Replication protein E1; 97.2 0.00042 1.4E-08 52.5 5.2 29 21-49 122-150 (305)
254 3cmw_A Protein RECA, recombina 97.2 0.0002 6.8E-09 65.2 3.7 26 24-49 1081-1106(1706)
255 3io5_A Recombination and repai 97.2 0.00031 1.1E-08 53.5 4.2 29 20-49 24-52 (333)
256 3b9q_A Chloroplast SRP recepto 97.2 0.00026 8.9E-09 53.6 3.8 25 25-49 100-124 (302)
257 2oap_1 GSPE-2, type II secreti 97.2 0.00055 1.9E-08 55.5 5.9 28 25-52 260-287 (511)
258 1np6_A Molybdopterin-guanine d 97.2 0.00032 1.1E-08 48.8 4.0 24 26-49 7-30 (174)
259 2ocp_A DGK, deoxyguanosine kin 97.2 0.00025 8.5E-09 51.6 3.5 25 26-50 3-27 (241)
260 1xjc_A MOBB protein homolog; s 97.2 0.00032 1.1E-08 48.6 3.9 24 26-49 5-28 (169)
261 3tqf_A HPR(Ser) kinase; transf 97.2 0.00026 9E-09 49.2 3.3 24 25-48 16-39 (181)
262 2axn_A 6-phosphofructo-2-kinas 97.2 0.00021 7.1E-09 58.1 3.1 26 26-51 36-61 (520)
263 4edh_A DTMP kinase, thymidylat 97.2 0.0003 1E-08 50.5 3.7 26 25-50 6-31 (213)
264 3e70_C DPA, signal recognition 97.2 0.00029 1E-08 53.9 3.8 26 24-49 128-153 (328)
265 3p32_A Probable GTPase RV1496/ 97.2 0.0009 3.1E-08 51.7 6.5 24 26-49 80-103 (355)
266 3sfz_A APAF-1, apoptotic pepti 97.1 0.00047 1.6E-08 60.8 5.4 45 1-48 126-170 (1249)
267 3hdt_A Putative kinase; struct 97.1 0.00037 1.3E-08 50.4 4.0 26 27-52 16-41 (223)
268 3lv8_A DTMP kinase, thymidylat 97.1 0.00037 1.3E-08 50.9 3.9 26 25-50 27-52 (236)
269 1x6v_B Bifunctional 3'-phospho 97.1 0.00054 1.9E-08 56.8 5.3 25 25-49 52-76 (630)
270 3v9p_A DTMP kinase, thymidylat 97.1 0.00027 9.4E-09 51.3 3.1 25 25-49 25-49 (227)
271 3tmk_A Thymidylate kinase; pho 97.1 0.0004 1.4E-08 50.0 3.9 27 25-51 5-31 (216)
272 3aez_A Pantothenate kinase; tr 97.1 0.00035 1.2E-08 53.1 3.8 27 24-50 89-115 (312)
273 2gza_A Type IV secretion syste 97.1 0.00039 1.3E-08 53.9 4.2 29 24-52 174-202 (361)
274 3kta_A Chromosome segregation 97.1 0.00047 1.6E-08 47.7 3.9 26 26-51 27-52 (182)
275 2ewv_A Twitching motility prot 97.1 0.00037 1.3E-08 54.3 3.7 27 24-50 135-161 (372)
276 2og2_A Putative signal recogni 97.1 0.00039 1.3E-08 53.9 3.8 25 25-49 157-181 (359)
277 3dm5_A SRP54, signal recogniti 97.1 0.00039 1.3E-08 55.3 3.8 25 25-49 100-124 (443)
278 2pcj_A ABC transporter, lipopr 97.0 0.00033 1.1E-08 50.6 3.0 26 25-50 30-55 (224)
279 3jvv_A Twitching mobility prot 97.0 0.00044 1.5E-08 53.6 3.7 26 25-50 123-148 (356)
280 3tif_A Uncharacterized ABC tra 97.0 0.00036 1.2E-08 50.9 3.0 26 25-50 31-56 (235)
281 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.001 3.5E-08 50.9 5.6 28 25-52 171-198 (330)
282 3cr8_A Sulfate adenylyltranfer 97.0 0.0004 1.4E-08 56.8 3.5 26 25-50 369-394 (552)
283 2yhs_A FTSY, cell division pro 97.0 0.00045 1.5E-08 55.7 3.7 25 25-49 293-317 (503)
284 1p5z_B DCK, deoxycytidine kina 97.0 0.00016 5.6E-09 53.3 1.0 26 25-50 24-49 (263)
285 1q57_A DNA primase/helicase; d 97.0 0.00053 1.8E-08 55.3 4.0 31 20-50 237-267 (503)
286 2cbz_A Multidrug resistance-as 97.0 0.00043 1.5E-08 50.5 3.1 25 25-49 31-55 (237)
287 3b85_A Phosphate starvation-in 97.0 0.00037 1.3E-08 49.9 2.7 24 25-48 22-45 (208)
288 4tmk_A Protein (thymidylate ki 97.0 0.00061 2.1E-08 48.9 3.8 25 25-49 3-27 (213)
289 3ld9_A DTMP kinase, thymidylat 97.0 0.00057 2E-08 49.4 3.7 27 25-51 21-47 (223)
290 1a7j_A Phosphoribulokinase; tr 97.0 0.00019 6.6E-09 54.0 1.2 25 26-50 6-30 (290)
291 1zu4_A FTSY; GTPase, signal re 97.0 0.00057 1.9E-08 52.1 3.8 25 25-49 105-129 (320)
292 1sq5_A Pantothenate kinase; P- 97.0 0.00057 1.9E-08 51.7 3.8 26 25-50 80-105 (308)
293 2gk6_A Regulator of nonsense t 97.0 0.00054 1.8E-08 56.9 3.9 24 26-49 196-219 (624)
294 2v3c_C SRP54, signal recogniti 96.9 0.00039 1.3E-08 55.2 2.8 24 26-49 100-123 (432)
295 1bif_A 6-phosphofructo-2-kinas 96.9 0.00056 1.9E-08 54.8 3.7 25 26-50 40-64 (469)
296 1sgw_A Putative ABC transporte 96.9 0.00046 1.6E-08 49.6 2.9 26 25-50 35-60 (214)
297 1b0u_A Histidine permease; ABC 96.9 0.00048 1.6E-08 51.0 3.1 26 25-50 32-57 (262)
298 2b8t_A Thymidine kinase; deoxy 96.9 0.00067 2.3E-08 49.1 3.8 25 25-49 12-36 (223)
299 1w36_D RECD, exodeoxyribonucle 96.9 0.00054 1.8E-08 56.7 3.6 25 25-49 164-188 (608)
300 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00061 2.1E-08 50.1 3.5 24 25-48 29-52 (250)
301 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00057 2E-08 52.9 3.5 25 25-49 30-54 (359)
302 2zu0_C Probable ATP-dependent 96.9 0.00065 2.2E-08 50.4 3.6 24 25-48 46-69 (267)
303 1g6h_A High-affinity branched- 96.9 0.00053 1.8E-08 50.6 3.0 26 25-50 33-58 (257)
304 1lw7_A Transcriptional regulat 96.9 0.00069 2.3E-08 52.5 3.8 27 25-51 170-196 (365)
305 1p9r_A General secretion pathw 96.9 0.0008 2.7E-08 53.2 4.2 28 24-51 166-193 (418)
306 2pze_A Cystic fibrosis transme 96.9 0.00057 1.9E-08 49.6 3.1 25 25-49 34-58 (229)
307 1mv5_A LMRA, multidrug resista 96.9 0.00053 1.8E-08 50.2 2.9 25 25-49 28-52 (243)
308 1oix_A RAS-related protein RAB 96.9 0.00064 2.2E-08 47.5 3.2 23 27-49 31-53 (191)
309 1ji0_A ABC transporter; ATP bi 96.9 0.00057 1.9E-08 49.9 3.0 26 25-50 32-57 (240)
310 3gfo_A Cobalt import ATP-bindi 96.9 0.00058 2E-08 51.0 3.1 25 25-49 34-58 (275)
311 2ff7_A Alpha-hemolysin translo 96.9 0.00057 2E-08 50.2 3.0 26 25-50 35-60 (247)
312 2olj_A Amino acid ABC transpor 96.9 0.0006 2E-08 50.6 3.1 26 25-50 50-75 (263)
313 2f1r_A Molybdopterin-guanine d 96.9 0.00041 1.4E-08 48.1 2.0 25 26-50 3-27 (171)
314 2f9l_A RAB11B, member RAS onco 96.9 0.00073 2.5E-08 47.4 3.4 22 27-48 7-28 (199)
315 2qi9_C Vitamin B12 import ATP- 96.9 0.00062 2.1E-08 50.1 3.1 26 25-50 26-51 (249)
316 2onk_A Molybdate/tungstate ABC 96.9 0.00063 2.2E-08 49.7 3.1 24 26-49 25-48 (240)
317 1m8p_A Sulfate adenylyltransfe 96.8 0.00057 1.9E-08 56.2 3.1 25 26-50 397-421 (573)
318 4g1u_C Hemin import ATP-bindin 96.8 0.00063 2.2E-08 50.5 3.1 26 25-50 37-62 (266)
319 1z47_A CYSA, putative ABC-tran 96.8 0.00074 2.5E-08 52.2 3.5 25 25-49 41-65 (355)
320 3rlf_A Maltose/maltodextrin im 96.8 0.00076 2.6E-08 52.6 3.6 25 25-49 29-53 (381)
321 2ghi_A Transport protein; mult 96.8 0.00064 2.2E-08 50.3 3.0 25 25-49 46-70 (260)
322 2ihy_A ABC transporter, ATP-bi 96.8 0.00065 2.2E-08 50.8 3.1 26 25-50 47-72 (279)
323 1vpl_A ABC transporter, ATP-bi 96.8 0.00066 2.2E-08 50.1 3.1 25 25-49 41-65 (256)
324 2it1_A 362AA long hypothetical 96.8 0.00078 2.7E-08 52.3 3.6 25 25-49 29-53 (362)
325 2ixe_A Antigen peptide transpo 96.8 0.00065 2.2E-08 50.6 3.0 26 25-50 45-70 (271)
326 2yyz_A Sugar ABC transporter, 96.8 0.00078 2.7E-08 52.2 3.5 25 25-49 29-53 (359)
327 1nrj_B SR-beta, signal recogni 96.8 0.0009 3.1E-08 47.5 3.6 24 26-49 13-36 (218)
328 2dyk_A GTP-binding protein; GT 96.8 0.00085 2.9E-08 44.9 3.4 22 27-48 3-24 (161)
329 1v43_A Sugar-binding transport 96.8 0.00085 2.9E-08 52.2 3.6 25 25-49 37-61 (372)
330 1h65_A Chloroplast outer envel 96.8 0.0022 7.4E-08 47.5 5.7 41 7-47 21-61 (270)
331 1tf7_A KAIC; homohexamer, hexa 96.8 0.00093 3.2E-08 54.3 3.9 31 19-49 275-305 (525)
332 2yz2_A Putative ABC transporte 96.8 0.00073 2.5E-08 50.1 3.0 25 25-49 33-57 (266)
333 1vt4_I APAF-1 related killer D 96.8 0.0018 6.1E-08 56.8 5.8 42 2-47 131-172 (1221)
334 2zej_A Dardarin, leucine-rich 96.8 0.00064 2.2E-08 47.1 2.6 21 27-47 4-24 (184)
335 1g29_1 MALK, maltose transport 96.8 0.00086 3E-08 52.2 3.5 25 25-49 29-53 (372)
336 2nq2_C Hypothetical ABC transp 96.8 0.00074 2.5E-08 49.7 3.0 25 25-49 31-55 (253)
337 3sop_A Neuronal-specific septi 96.8 0.00092 3.2E-08 49.7 3.5 23 27-49 4-26 (270)
338 2wji_A Ferrous iron transport 96.8 0.00092 3.1E-08 45.4 3.2 22 26-47 4-25 (165)
339 1c9k_A COBU, adenosylcobinamid 96.8 0.00062 2.1E-08 47.6 2.3 23 28-51 2-24 (180)
340 3d31_A Sulfate/molybdate ABC t 96.8 0.00066 2.3E-08 52.4 2.7 25 25-49 26-50 (348)
341 1j8m_F SRP54, signal recogniti 96.8 0.0016 5.4E-08 49.1 4.7 25 25-49 98-122 (297)
342 3hjn_A DTMP kinase, thymidylat 96.8 0.0013 4.5E-08 46.5 4.0 22 28-49 3-24 (197)
343 1z2a_A RAS-related protein RAB 96.8 0.001 3.5E-08 44.8 3.4 23 26-48 6-28 (168)
344 2wjy_A Regulator of nonsense t 96.7 0.00096 3.3E-08 56.9 3.8 24 26-49 372-395 (800)
345 2j37_W Signal recognition part 96.7 0.00095 3.3E-08 54.0 3.6 25 25-49 101-125 (504)
346 2ce2_X GTPase HRAS; signaling 96.7 0.0011 3.7E-08 44.4 3.3 22 27-48 5-26 (166)
347 2nzj_A GTP-binding protein REM 96.7 0.001 3.6E-08 45.1 3.3 22 26-47 5-26 (175)
348 1kao_A RAP2A; GTP-binding prot 96.7 0.0011 3.9E-08 44.4 3.4 23 26-48 4-26 (167)
349 1ls1_A Signal recognition part 96.7 0.0012 4.2E-08 49.6 3.8 25 25-49 98-122 (295)
350 2pjz_A Hypothetical protein ST 96.7 0.00089 3E-08 49.6 3.0 25 25-49 30-54 (263)
351 3gd7_A Fusion complex of cysti 96.7 0.0011 3.6E-08 52.0 3.5 25 25-49 47-71 (390)
352 4hlc_A DTMP kinase, thymidylat 96.7 0.0025 8.6E-08 45.4 5.0 26 26-51 3-28 (205)
353 3def_A T7I23.11 protein; chlor 96.7 0.0029 1E-07 46.5 5.6 40 8-47 19-58 (262)
354 1z0j_A RAB-22, RAS-related pro 96.7 0.0013 4.5E-08 44.3 3.4 23 26-48 7-29 (170)
355 1u8z_A RAS-related protein RAL 96.7 0.0013 4.4E-08 44.2 3.4 23 26-48 5-27 (168)
356 1ek0_A Protein (GTP-binding pr 96.7 0.0013 4.4E-08 44.3 3.4 23 26-48 4-26 (170)
357 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.0014 4.6E-08 44.7 3.4 23 26-48 8-30 (177)
358 2wjg_A FEOB, ferrous iron tran 96.6 0.0012 4.2E-08 45.5 3.2 22 26-47 8-29 (188)
359 2xxa_A Signal recognition part 96.6 0.0013 4.5E-08 52.2 3.7 25 25-49 100-124 (433)
360 1z08_A RAS-related protein RAB 96.6 0.0014 4.8E-08 44.3 3.4 23 26-48 7-29 (170)
361 3q85_A GTP-binding protein REM 96.6 0.0013 4.4E-08 44.5 3.2 21 27-47 4-24 (169)
362 1tq4_A IIGP1, interferon-induc 96.6 0.0021 7.2E-08 50.7 4.8 24 26-49 70-93 (413)
363 1g16_A RAS-related protein SEC 96.6 0.0014 4.6E-08 44.3 3.3 22 26-47 4-25 (170)
364 2qm8_A GTPase/ATPase; G protei 96.6 0.0028 9.6E-08 48.6 5.4 25 25-49 55-79 (337)
365 3cmu_A Protein RECA, recombina 96.6 0.0014 4.8E-08 60.6 4.2 29 21-49 1077-1105(2050)
366 2bbs_A Cystic fibrosis transme 96.6 0.0011 3.7E-08 49.9 3.0 25 25-49 64-88 (290)
367 1ky3_A GTP-binding protein YPT 96.6 0.0015 5.1E-08 44.6 3.4 23 26-48 9-31 (182)
368 2gj8_A MNME, tRNA modification 96.6 0.0014 4.7E-08 45.0 3.2 24 25-48 4-27 (172)
369 1oxx_K GLCV, glucose, ABC tran 96.6 0.00072 2.5E-08 52.3 1.9 25 25-49 31-55 (353)
370 2erx_A GTP-binding protein DI- 96.6 0.0014 4.8E-08 44.2 3.3 22 26-47 4-25 (172)
371 3q72_A GTP-binding protein RAD 96.6 0.0013 4.3E-08 44.3 3.0 21 26-46 3-23 (166)
372 2www_A Methylmalonic aciduria 96.6 0.0053 1.8E-07 47.3 6.8 25 25-49 74-98 (349)
373 1ko7_A HPR kinase/phosphatase; 96.6 0.0026 8.8E-08 48.3 4.9 24 25-48 144-167 (314)
374 3cmw_A Protein RECA, recombina 96.6 0.0013 4.4E-08 60.0 3.8 29 21-49 728-756 (1706)
375 1r8s_A ADP-ribosylation factor 96.6 0.0015 5.3E-08 43.8 3.4 22 27-48 2-23 (164)
376 1r2q_A RAS-related protein RAB 96.6 0.0016 5.4E-08 43.9 3.4 23 26-48 7-29 (170)
377 1c1y_A RAS-related protein RAP 96.6 0.0016 5.5E-08 43.7 3.4 23 26-48 4-26 (167)
378 2gks_A Bifunctional SAT/APS ki 96.6 0.002 7E-08 52.6 4.5 26 25-50 372-397 (546)
379 3bc1_A RAS-related protein RAB 96.6 0.0016 5.5E-08 44.9 3.4 23 26-48 12-34 (195)
380 1tf7_A KAIC; homohexamer, hexa 96.6 0.0013 4.5E-08 53.4 3.3 25 21-45 35-59 (525)
381 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.002 6.8E-08 43.5 3.7 24 26-49 24-47 (149)
382 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0017 5.7E-08 44.9 3.3 23 26-48 8-30 (184)
383 2xzl_A ATP-dependent helicase 96.5 0.0016 5.5E-08 55.6 3.8 22 26-47 376-397 (802)
384 2lkc_A Translation initiation 96.5 0.0018 6.3E-08 44.1 3.5 23 25-47 8-30 (178)
385 2ffh_A Protein (FFH); SRP54, s 96.5 0.0022 7.4E-08 50.8 4.3 25 25-49 98-122 (425)
386 2hxs_A RAB-26, RAS-related pro 96.5 0.0017 5.6E-08 44.3 3.3 22 26-47 7-28 (178)
387 3con_A GTPase NRAS; structural 96.5 0.0018 6.1E-08 44.8 3.4 23 26-48 22-44 (190)
388 2y8e_A RAB-protein 6, GH09086P 96.5 0.0018 6.1E-08 44.1 3.3 23 26-48 15-37 (179)
389 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0019 6.4E-08 44.4 3.4 23 26-48 5-27 (189)
390 2fn4_A P23, RAS-related protei 96.5 0.0019 6.4E-08 44.0 3.4 23 26-48 10-32 (181)
391 1z0f_A RAB14, member RAS oncog 96.5 0.0019 6.5E-08 43.9 3.4 23 26-48 16-38 (179)
392 1upt_A ARL1, ADP-ribosylation 96.5 0.0019 6.6E-08 43.6 3.4 22 26-47 8-29 (171)
393 3tw8_B RAS-related protein RAB 96.5 0.0017 5.7E-08 44.3 3.1 22 26-47 10-31 (181)
394 1yrb_A ATP(GTP)binding protein 96.5 0.0018 6.1E-08 47.3 3.4 25 26-50 15-39 (262)
395 2bme_A RAB4A, RAS-related prot 96.5 0.0019 6.6E-08 44.4 3.3 23 26-48 11-33 (186)
396 2oil_A CATX-8, RAS-related pro 96.5 0.0019 6.7E-08 44.7 3.4 23 26-48 26-48 (193)
397 2rcn_A Probable GTPase ENGC; Y 96.5 0.0019 6.4E-08 50.0 3.5 25 25-49 215-239 (358)
398 3nh6_A ATP-binding cassette SU 96.5 0.0011 3.8E-08 50.2 2.2 26 25-50 80-105 (306)
399 2cxx_A Probable GTP-binding pr 96.5 0.0017 5.8E-08 44.7 3.0 21 27-47 3-23 (190)
400 2efe_B Small GTP-binding prote 96.5 0.0021 7.3E-08 43.9 3.4 23 26-48 13-35 (181)
401 1m2o_B GTP-binding protein SAR 96.5 0.002 6.9E-08 44.8 3.3 22 26-47 24-45 (190)
402 2a9k_A RAS-related protein RAL 96.5 0.0021 7.1E-08 44.0 3.4 23 26-48 19-41 (187)
403 3kkq_A RAS-related protein M-R 96.4 0.002 6.8E-08 44.2 3.2 23 26-48 19-41 (183)
404 3tui_C Methionine import ATP-b 96.4 0.0021 7.1E-08 49.9 3.6 25 25-49 54-78 (366)
405 3clv_A RAB5 protein, putative; 96.4 0.0022 7.4E-08 44.5 3.4 23 26-48 8-30 (208)
406 2g6b_A RAS-related protein RAB 96.4 0.0022 7.7E-08 43.7 3.4 23 26-48 11-33 (180)
407 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0019 6.6E-08 51.6 3.4 26 24-49 137-162 (460)
408 1svi_A GTP-binding protein YSX 96.4 0.0019 6.3E-08 44.8 3.0 22 26-47 24-45 (195)
409 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0023 7.8E-08 43.8 3.4 23 26-48 6-28 (186)
410 3ihw_A Centg3; RAS, centaurin, 96.4 0.0023 8E-08 44.3 3.4 23 26-48 21-43 (184)
411 2p67_A LAO/AO transport system 96.4 0.0046 1.6E-07 47.4 5.3 25 25-49 56-80 (341)
412 3k53_A Ferrous iron transport 96.4 0.002 6.7E-08 47.7 3.2 22 26-47 4-25 (271)
413 3c5c_A RAS-like protein 12; GD 96.4 0.0024 8.2E-08 44.3 3.4 23 26-48 22-44 (187)
414 2obl_A ESCN; ATPase, hydrolase 96.4 0.0028 9.7E-08 48.8 4.1 29 24-52 70-98 (347)
415 2dpy_A FLII, flagellum-specifi 96.4 0.0031 1.1E-07 50.1 4.4 29 24-52 156-184 (438)
416 1pui_A ENGB, probable GTP-bind 96.4 0.00082 2.8E-08 47.4 1.0 23 25-47 26-48 (210)
417 2yv5_A YJEQ protein; hydrolase 96.4 0.0022 7.5E-08 48.4 3.4 25 25-50 165-189 (302)
418 2fz4_A DNA repair protein RAD2 96.4 0.0048 1.7E-07 44.8 5.1 26 26-51 109-134 (237)
419 2gf9_A RAS-related protein RAB 96.4 0.0024 8.3E-08 44.2 3.4 23 26-48 23-45 (189)
420 3bwd_D RAC-like GTP-binding pr 96.4 0.0025 8.4E-08 43.6 3.4 23 26-48 9-31 (182)
421 2vp4_A Deoxynucleoside kinase; 96.4 0.0013 4.3E-08 47.6 1.9 24 25-48 20-43 (230)
422 2atv_A RERG, RAS-like estrogen 96.4 0.0025 8.5E-08 44.4 3.4 23 26-48 29-51 (196)
423 3t5g_A GTP-binding protein RHE 96.4 0.0022 7.7E-08 43.8 3.2 22 26-47 7-28 (181)
424 3t1o_A Gliding protein MGLA; G 96.4 0.0025 8.4E-08 44.1 3.4 24 26-49 15-38 (198)
425 3tkl_A RAS-related protein RAB 96.4 0.0025 8.5E-08 44.2 3.4 23 26-48 17-39 (196)
426 1knx_A Probable HPR(Ser) kinas 96.4 0.0017 5.8E-08 49.3 2.6 23 25-47 147-169 (312)
427 3dz8_A RAS-related protein RAB 96.4 0.0027 9.1E-08 44.1 3.5 24 26-49 24-47 (191)
428 3ice_A Transcription terminati 96.4 0.0028 9.5E-08 49.6 3.8 26 24-49 173-198 (422)
429 2fg5_A RAB-22B, RAS-related pr 96.4 0.0026 8.8E-08 44.2 3.4 23 26-48 24-46 (192)
430 2iwr_A Centaurin gamma 1; ANK 96.4 0.0018 6.2E-08 44.2 2.5 23 26-48 8-30 (178)
431 2bov_A RAla, RAS-related prote 96.4 0.0026 8.8E-08 44.5 3.4 23 26-48 15-37 (206)
432 1x3s_A RAS-related protein RAB 96.3 0.0027 9.1E-08 43.9 3.4 23 26-48 16-38 (195)
433 1zd9_A ADP-ribosylation factor 96.3 0.0027 9.2E-08 44.0 3.4 23 26-48 23-45 (188)
434 3reg_A RHO-like small GTPase; 96.3 0.0027 9.2E-08 44.1 3.4 23 26-48 24-46 (194)
435 1vg8_A RAS-related protein RAB 96.3 0.0027 9.3E-08 44.4 3.4 23 26-48 9-31 (207)
436 1zbd_A Rabphilin-3A; G protein 96.3 0.0025 8.5E-08 44.6 3.2 22 26-47 9-30 (203)
437 2a5j_A RAS-related protein RAB 96.3 0.0027 9.2E-08 44.0 3.4 22 27-48 23-44 (191)
438 1z06_A RAS-related protein RAB 96.3 0.0028 9.6E-08 43.8 3.4 23 26-48 21-43 (189)
439 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0028 9.7E-08 50.7 3.8 25 25-49 151-175 (473)
440 1gwn_A RHO-related GTP-binding 96.3 0.0027 9.1E-08 44.9 3.3 23 26-48 29-51 (205)
441 2ew1_A RAS-related protein RAB 96.3 0.0027 9.2E-08 44.8 3.3 23 26-48 27-49 (201)
442 1fzq_A ADP-ribosylation factor 96.3 0.0024 8.1E-08 44.0 3.0 22 26-47 17-38 (181)
443 3oes_A GTPase rhebl1; small GT 96.3 0.0027 9.3E-08 44.4 3.3 23 26-48 25-47 (201)
444 2p5s_A RAS and EF-hand domain 96.3 0.0028 9.7E-08 44.3 3.4 23 26-48 29-51 (199)
445 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0027 9.4E-08 44.5 3.3 23 26-48 9-31 (206)
446 3qks_A DNA double-strand break 96.3 0.0032 1.1E-07 44.7 3.7 27 25-51 23-49 (203)
447 3pqc_A Probable GTP-binding pr 96.3 0.0024 8.3E-08 44.1 3.0 23 26-48 24-46 (195)
448 2wkq_A NPH1-1, RAS-related C3 96.3 0.0071 2.4E-07 45.5 5.7 24 25-48 155-178 (332)
449 3ug7_A Arsenical pump-driving 96.3 0.0038 1.3E-07 48.1 4.2 29 21-49 22-50 (349)
450 2gf0_A GTP-binding protein DI- 96.3 0.0032 1.1E-07 43.7 3.4 23 26-48 9-31 (199)
451 1ksh_A ARF-like protein 2; sma 96.2 0.0028 9.4E-08 43.6 3.0 23 25-47 18-40 (186)
452 3lxx_A GTPase IMAP family memb 96.2 0.0029 9.9E-08 45.7 3.3 23 26-48 30-52 (239)
453 2cjw_A GTP-binding protein GEM 96.2 0.0029 9.8E-08 44.2 3.0 23 26-48 7-29 (192)
454 1u0l_A Probable GTPase ENGC; p 96.2 0.0023 7.9E-08 48.2 2.7 26 25-50 169-194 (301)
455 3cph_A RAS-related protein SEC 96.2 0.0033 1.1E-07 44.2 3.4 22 26-47 21-42 (213)
456 1zj6_A ADP-ribosylation factor 96.2 0.0031 1.1E-07 43.5 3.2 22 26-47 17-38 (187)
457 2fh5_B SR-beta, signal recogni 96.2 0.0034 1.1E-07 44.3 3.4 23 26-48 8-30 (214)
458 1moz_A ARL1, ADP-ribosylation 96.2 0.0019 6.5E-08 44.2 2.0 22 25-46 18-39 (183)
459 2atx_A Small GTP binding prote 96.2 0.0035 1.2E-07 43.5 3.4 23 26-48 19-41 (194)
460 2o52_A RAS-related protein RAB 96.2 0.0032 1.1E-07 44.1 3.2 22 26-47 26-47 (200)
461 1f6b_A SAR1; gtpases, N-termin 96.2 0.0024 8.3E-08 44.8 2.5 22 26-47 26-47 (198)
462 2q3h_A RAS homolog gene family 96.2 0.0034 1.2E-07 43.8 3.2 22 26-47 21-42 (201)
463 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0043 1.5E-07 48.3 4.1 26 24-49 34-59 (392)
464 2qnr_A Septin-2, protein NEDD5 96.2 0.0026 8.9E-08 48.0 2.7 22 26-47 19-40 (301)
465 2fv8_A H6, RHO-related GTP-bin 96.2 0.0037 1.3E-07 44.0 3.4 23 26-48 26-48 (207)
466 2b6h_A ADP-ribosylation factor 96.2 0.0032 1.1E-07 43.8 3.0 21 26-46 30-50 (192)
467 3cbq_A GTP-binding protein REM 96.1 0.0024 8.3E-08 44.7 2.4 21 26-46 24-44 (195)
468 3b5x_A Lipid A export ATP-bind 96.1 0.005 1.7E-07 50.6 4.5 26 25-50 369-394 (582)
469 2j1l_A RHO-related GTP-binding 96.1 0.0036 1.2E-07 44.4 3.2 22 26-47 35-56 (214)
470 1xx6_A Thymidine kinase; NESG, 96.1 0.0045 1.5E-07 43.6 3.7 25 25-49 8-32 (191)
471 2h17_A ADP-ribosylation factor 96.1 0.003 1E-07 43.4 2.7 22 26-47 22-43 (181)
472 2fu5_C RAS-related protein RAB 96.1 0.002 6.7E-08 44.2 1.8 22 26-47 9-30 (183)
473 2qag_B Septin-6, protein NEDD5 96.1 0.0027 9.4E-08 50.2 2.8 21 28-48 45-65 (427)
474 2f7s_A C25KG, RAS-related prot 96.1 0.0037 1.3E-07 44.2 3.3 22 26-47 26-47 (217)
475 2hup_A RAS-related protein RAB 96.1 0.004 1.4E-07 43.7 3.4 23 26-48 30-52 (201)
476 2il1_A RAB12; G-protein, GDP, 96.1 0.0035 1.2E-07 43.6 3.0 21 27-47 28-48 (192)
477 2gco_A H9, RHO-related GTP-bin 96.1 0.0039 1.3E-07 43.6 3.3 23 26-48 26-48 (201)
478 2j0v_A RAC-like GTP-binding pr 96.1 0.004 1.4E-07 43.9 3.3 23 26-48 10-32 (212)
479 4bas_A ADP-ribosylation factor 96.1 0.0038 1.3E-07 43.3 3.1 22 26-47 18-39 (199)
480 4gzl_A RAS-related C3 botulinu 96.1 0.0044 1.5E-07 43.6 3.3 23 26-48 31-53 (204)
481 3cpj_B GTP-binding protein YPT 96.0 0.0047 1.6E-07 44.0 3.4 23 26-48 14-36 (223)
482 3ch4_B Pmkase, phosphomevalona 96.0 0.0069 2.4E-07 43.0 4.2 28 24-51 10-37 (202)
483 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0044 1.5E-07 50.5 3.6 26 24-49 46-71 (538)
484 2e87_A Hypothetical protein PH 96.0 0.0081 2.8E-07 46.3 4.9 24 25-48 167-190 (357)
485 3llm_A ATP-dependent RNA helic 96.0 0.005 1.7E-07 44.5 3.5 22 25-46 76-97 (235)
486 3iby_A Ferrous iron transport 96.0 0.0044 1.5E-07 45.6 3.3 22 26-47 2-23 (256)
487 3b1v_A Ferrous iron uptake tra 96.0 0.0044 1.5E-07 46.0 3.3 22 26-47 4-25 (272)
488 1g5t_A COB(I)alamin adenosyltr 96.0 0.0058 2E-07 43.2 3.7 31 26-56 29-62 (196)
489 2h57_A ADP-ribosylation factor 96.0 0.0034 1.2E-07 43.4 2.5 23 26-48 22-44 (190)
490 2g3y_A GTP-binding protein GEM 96.0 0.0044 1.5E-07 44.2 3.1 21 26-46 38-58 (211)
491 1t9h_A YLOQ, probable GTPase E 96.0 0.0013 4.4E-08 49.9 0.3 25 25-49 173-197 (307)
492 3a1s_A Iron(II) transport prot 96.0 0.0047 1.6E-07 45.5 3.3 22 26-47 6-27 (258)
493 3llu_A RAS-related GTP-binding 96.0 0.0049 1.7E-07 43.0 3.2 22 26-47 21-42 (196)
494 1qhl_A Protein (cell division 96.0 0.0016 5.6E-08 47.2 0.7 24 28-51 30-53 (227)
495 3q3j_B RHO-related GTP-binding 95.9 0.0053 1.8E-07 43.6 3.4 23 26-48 28-50 (214)
496 2aka_B Dynamin-1; fusion prote 95.9 0.01 3.4E-07 44.2 5.0 41 7-47 4-48 (299)
497 3b60_A Lipid A export ATP-bind 95.9 0.0046 1.6E-07 50.8 3.4 26 25-50 369-394 (582)
498 3b6e_A Interferon-induced heli 95.9 0.0061 2.1E-07 42.9 3.6 24 26-49 49-72 (216)
499 3cio_A ETK, tyrosine-protein k 95.9 0.016 5.6E-07 43.5 6.0 25 25-49 104-129 (299)
500 2qu8_A Putative nucleolar GTP- 95.9 0.0049 1.7E-07 44.1 3.0 22 26-47 30-51 (228)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-23 Score=163.37 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=116.8
Q ss_pred CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.|.....+ + +-|..+++++|||||||||||++|+++|.+++ .+|+.++++.+.+.++++.+
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CEEEEEEGGGGSCSSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CCceEEEhHHhhccccchHH
Confidence 56899999888776654 2 23777789999999999999999999999999 56899999999998888776
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCC--ccce---eEEEe---ccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGS--KVGK---LTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~--~~~~---~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
. .+ ...|..++++|+|.++..... ..+. ..... ..++......++++ |+|| |++..+||++
T Consensus 228 ~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v--IaAT-Nrpd~LDpAl 304 (405)
T 4b4t_J 228 RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI--IMAT-NRLDILDPAL 304 (405)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE--EEEE-SCSSSSCHHH
T ss_pred HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE--Eecc-CChhhCCHhH
Confidence 2 22 334778888999988544311 1111 00111 11222223334444 5665 9999999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
++ || ..|+++.|+.++..+|++.++.+..
T Consensus 305 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~ 336 (405)
T 4b4t_J 305 LRPGRIDRKIEFPPPSVAARAEILRIHSRKMN 336 (405)
T ss_dssp HSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB
T ss_pred cCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC
Confidence 97 99 8999999999999999998876543
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9e-23 Score=160.41 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=116.7
Q ss_pred CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.|.....+ + +-|..+++++|||||||||||++|+++|.+++ .+|+.++.+++.+.+++..+
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CEEEEEESGGGCCSSSSHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CCEEEEEHHHhhhccCchHH
Confidence 56899999888776654 2 23666789999999999999999999999999 56889999999998888776
Q ss_pred hh-------h-hhccCcEEEEEEeccCCCCCCc--cce----eEE--EeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 EE-------T-EMIEGEVVEIQIERPATGLGSK--VGK----LTM--KTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ~~-------~-~~~~~~i~~~~id~~~~~~~~~--~~~----~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
.. + ...|..++++|+|.++...... .+. ..+ ....++......++++ |+|| |++..+||++
T Consensus 262 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViV--IaAT-Nrpd~LDpAL 338 (437)
T 4b4t_I 262 RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKV--IMAT-NKIETLDPAL 338 (437)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEE--EEEE-SCSTTCCTTS
T ss_pred HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEE--EEeC-CChhhcCHHH
Confidence 21 2 3357788999999885443111 110 000 0111222223334444 6666 9999999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
++ || ..|+++.|+.++..+|++.++.+..
T Consensus 339 lRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~ 370 (437)
T 4b4t_I 339 IRPGRIDRKILFENPDLSTKKKILGIHTSKMN 370 (437)
T ss_dssp SCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC
T ss_pred hcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC
Confidence 97 99 7899999999999999999886543
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.4e-23 Score=162.11 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=113.7
Q ss_pred CCchHHHHHHHHHHHHH--------HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGM--------IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~--------~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.|.....+ .+-|..+++++|||||||||||++|+++|.+++ .+|..++++.+.+.+++..+
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~~~~vGese 260 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--ATFLKLAAPQLVQMYIGEGA 260 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGCSSCSSHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CCEEEEehhhhhhcccchHH
Confidence 57899999887754332 234667789999999999999999999999999 56899999999988888766
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCCc--cce--e--EE--EeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGSK--VGK--L--TM--KTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~--~~~--~--~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
. .+ ...|..++++|+|.++....+. .+. . .+ ....++......++++ |+|| |++..+||++
T Consensus 261 ~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViV--IaaT-Nrp~~LD~Al 337 (434)
T 4b4t_M 261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV--LAAT-NRVDVLDPAL 337 (434)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEE--EEEC-SSCCCCCTTT
T ss_pred HHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEE--EEeC-CCchhcCHhH
Confidence 2 12 3347788888999874433111 110 0 00 0111222222233344 5566 9999999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++ || ..|+++.|+.++..+|++.++.+.
T Consensus 338 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (434)
T 4b4t_M 338 LRSGRLDRKIEFPLPSEDSRAQILQIHSRKM 368 (434)
T ss_dssp CSTTSEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred hcCCceeEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 87 99 889999999999999999887553
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-22 Score=160.87 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=115.1
Q ss_pred CCchHHHHHHHHHHHHH--------HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGM--------IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~--------~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.|.....+ -+-|..+++++|||||||||||++|+++|.+++ .+|+.++++.+.+.+++..+
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~fi~vs~s~L~sk~vGese 288 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--ATFIRVIGSELVQKYVGEGA 288 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGCCCSSSHHH
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CCeEEEEhHHhhcccCCHHH
Confidence 57899999888765543 123667789999999999999999999999999 56899999999998888766
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCCc-cc-e---eEEEe---ccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGSK-VG-K---LTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~-~~-~---~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
. .+ ...|..++++|+|.++....+. .+ . ..... ..++......++++ |+|| |++..+++++
T Consensus 289 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV--IaAT-Nrpd~LDpAL 365 (467)
T 4b4t_H 289 RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV--MFAT-NRPNTLDPAL 365 (467)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE--EEEC-SCTTSBCHHH
T ss_pred HHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE--EeCC-CCcccCChhh
Confidence 2 22 3346788889999885443111 11 0 00001 11222222233444 5665 9999999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++ || ..|+++.|+.++..+|++.++.+.
T Consensus 366 lRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~ 396 (467)
T 4b4t_H 366 LRPGRIDRKVEFSLPDLEGRANIFRIHSKSM 396 (467)
T ss_dssp HSTTTCCEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hccccccEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 97 99 899999999999999999887654
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-22 Score=159.69 Aligned_cols=159 Identities=23% Similarity=0.254 Sum_probs=114.8
Q ss_pred CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.|.....+ + +-|..+++++|||||||||||++|+++|.+++ .+|+.++++.+.+.+++..+
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~~~~v~~s~l~sk~~Gese 260 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--ANFIFSPASGIVDKYIGESA 260 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGTCCSSSSHHH
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehhhhccccchHHH
Confidence 56899999887766654 2 23667789999999999999999999999999 56889999999988888766
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCCcc----c--e--eEEEeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGSKV----G--K--LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~~----~--~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
. .+ ...|..++++|+|.++....... . . +.-....++......++++ |+|| |++..+||+|
T Consensus 261 ~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv--I~AT-Nrp~~LDpAl 337 (437)
T 4b4t_L 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI--IMAT-NRPDTLDPAL 337 (437)
T ss_dssp HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE--EEEE-SSTTSSCTTT
T ss_pred HHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE--EEec-CCchhhCHHH
Confidence 2 12 33467888899998854431111 0 0 0001112222233334444 6666 9999999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++ || ..|+++.|+.++..+|++.++.+.
T Consensus 338 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 338 LRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp TSTTSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred hCCCccceeeecCCcCHHHHHHHHHHHhcCC
Confidence 86 58 889999999999999999887553
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.3e-22 Score=157.10 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=113.2
Q ss_pred CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.|.....+ + +-|..+++++|||||||||||++|+++|.+++ .+|+.++.+.+.+.+++..+
T Consensus 174 igGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~~~~v~~~~l~~~~~Ge~e 251 (428)
T 4b4t_K 174 VGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AAFIRVNGSEFVHKYLGEGP 251 (428)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CEEEEEEGGGTCCSSCSHHH
T ss_pred hccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEecchhhccccchhH
Confidence 57899999887765543 2 23777789999999999999999999999999 56889999998888887765
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCCc--cce---eEEE---eccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGSK--VGK---LTMK---TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~--~~~---~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
. .+ ...|..++++++|.++...... ... .... ...++......++++ |+|| |++..+||++
T Consensus 252 ~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~v--I~aT-N~~~~LD~Al 328 (428)
T 4b4t_K 252 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV--IMAT-NRADTLDPAL 328 (428)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEE--EEEE-SCSSSCCHHH
T ss_pred HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEE--EEec-CChhhcChhh
Confidence 2 22 3346778888999874332110 000 0011 122233333344455 6666 9999999999
Q ss_pred hc--ce-eeEecC-CCCHHHHHHHHHHHhchh
Q psy14616 137 LD--RM-VIIPTQ-PYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 137 ~s--R~-~~i~~~-~~~~~e~~~il~~~l~~~ 164 (174)
++ || ..|+|+ .|+.++...|++.++.+.
T Consensus 329 lRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~ 360 (428)
T 4b4t_K 329 LRPGRLDRKIEFPSLRDRRERRLIFGTIASKM 360 (428)
T ss_dssp HSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS
T ss_pred hcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 97 99 789996 678999999998877553
No 7
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.82 E-value=8.9e-20 Score=142.11 Aligned_cols=155 Identities=59% Similarity=0.908 Sum_probs=105.0
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh-------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE------- 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (174)
+||++.+++++..+...++.+..+++++||+||||||||++|+++|+.+++..++..+++..+.+.+++..+.
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHH
Confidence 5899999999999999999999888999999999999999999999999987777777765544333222110
Q ss_pred -------------------------------------------------hh-h---------hccCcEEEEEEeccCCCC
Q psy14616 74 -------------------------------------------------ET-E---------MIEGEVVEIQIERPATGL 94 (174)
Q Consensus 74 -------------------------------------------------~~-~---------~~~~~i~~~~id~~~~~~ 94 (174)
.+ . ..++.++++|+|.+....
T Consensus 126 ~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~ 205 (368)
T 3uk6_A 126 SIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIES 205 (368)
T ss_dssp SBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHH
T ss_pred HHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHH
Confidence 00 0 013466777877762110
Q ss_pred --------CCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 95 --------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 95 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+.....+.+.... ....++ .+++.|.+..+++++++||.++.|++|+.+++.++++.++..
T Consensus 206 ~~~L~~~le~~~~~~~ii~t~------~~~~~i--~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 206 FSFLNRALESDMAPVLIMATN------RGITRI--RGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp HHHHHHHTTCTTCCEEEEEES------CSEEEC--BTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCCCeeeeecc------cceeee--eccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 0011111111110 011111 223335568899999999988999999999999999987654
No 8
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.81 E-value=3.4e-20 Score=142.57 Aligned_cols=158 Identities=21% Similarity=0.227 Sum_probs=105.6
Q ss_pred CCchHHHHHHHHHHHHHH-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|+|++.+++.+..+.... +.+..+++++||+||||||||++|+++|+.++ .+++.+++..+.+.+.+....
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~~~~~g~~~~ 97 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESEK 97 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CEEEEEEHHHHHTTTGGGHHH
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CCEEEEchHHHhhcccchHHH
Confidence 689999998877665332 23444568999999999999999999999998 457888887776666655441
Q ss_pred -------hh-hhccCcEEEEEEeccCCCCCCccce--eEEEecc---chhhh-ccccccchhhhcccCCCCCCCHHhhcc
Q psy14616 74 -------ET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTE---METSY-DLGAKMIEAIGTAYSSPHGIPIDLLDR 139 (174)
Q Consensus 74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~---~~~~~-~~~~~~~~~i~~~~~~~~~l~~~l~sR 139 (174)
.+ ...++.++++|+|.+....+..... ..+.... +.... ...+.++ |+++ |.+..+++++++|
T Consensus 98 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v--i~at-n~~~~ld~al~~R 174 (322)
T 3eie_A 98 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV--LGAT-NIPWQLDSAIRRR 174 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE--EEEE-SCGGGSCHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE--EEec-CChhhCCHHHHcc
Confidence 11 1234677888998884432111000 0000111 11111 1122333 5555 8889999999999
Q ss_pred e-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 140 M-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 140 ~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
| ..++++.|+.++..+|++.++.+
T Consensus 175 f~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 175 FERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 9 78999999999999999998754
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=138.99 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=104.6
Q ss_pred CCchHHHHHHHHHHHHHHH-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIK-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|+|++++++.+......-. .+..+++++||+||||||||++|+++|+.++. .++..+++..+.+.+.+..+.
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~~~~~i~~~~l~~~~~g~~~~ 92 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-STFFSISSSDLVSKWLGESEK 92 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-CEEEEEECCSSCCSSCCSCHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-CcEEEEEhHHHHhhhhhHHHH
Confidence 6899999988776554321 22345689999999999999999999999822 457778877776655554431
Q ss_pred -------hh-hhccCcEEEEEEeccCCCCCCccce--eEEEeccchhhhc----cccccchhhhcccCCCCCCCHHhhcc
Q psy14616 74 -------ET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTEMETSYD----LGAKMIEAIGTAYSSPHGIPIDLLDR 139 (174)
Q Consensus 74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~l~~~l~sR 139 (174)
.+ ...++.++++|+|.+.......... .......+..... ..+.++ ++++ |.+..+++++++|
T Consensus 93 ~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v--I~at-n~~~~ld~al~rR 169 (322)
T 1xwi_A 93 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV--LGAT-NIPWVLDSAIRRR 169 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE--EEEE-SCTTTSCHHHHHT
T ss_pred HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE--EEec-CCcccCCHHHHhh
Confidence 11 1234567778888874332111100 0111111111111 122333 5555 8999999999999
Q ss_pred e-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 140 M-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 140 ~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
| ..+.++.|+.++..+|++.++.+
T Consensus 170 f~~~i~i~~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 170 FEKRIYIPLPEPHARAAMFKLHLGT 194 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 9 78999999999999999997754
No 10
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.79 E-value=1.9e-18 Score=138.54 Aligned_cols=90 Identities=52% Similarity=0.771 Sum_probs=73.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhh----
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETE---- 76 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (174)
++||+++++.+..+.+.++.|..+++++||+||||||||++|+++|+.++...+|+.++++.+.+.+.++.+...+
T Consensus 39 iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 118 (456)
T 2c9o_A 39 LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRR 118 (456)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHH
Confidence 5899999999999999999999888999999999999999999999999977889999988888776665542111
Q ss_pred ------hccCcEEEEEEecc
Q psy14616 77 ------MIEGEVVEIQIERP 90 (174)
Q Consensus 77 ------~~~~~i~~~~id~~ 90 (174)
..++.++++|+|.+
T Consensus 119 a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 119 AIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp TEEEEEEEEEEEEEEEEEEE
T ss_pred HHhhhhcCCcEEEEechhhc
Confidence 12445666777765
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.79 E-value=1e-19 Score=153.38 Aligned_cols=159 Identities=23% Similarity=0.253 Sum_probs=113.0
Q ss_pred CCchHHHHHHHHHHHHH-HHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGM-IKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.|..+..+ ++. |..+++++|||||||||||++|+++|.+++ .+++.+++.++.+.+.++.+
T Consensus 206 IgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~~~~v~~~~l~sk~~gese 283 (806)
T 3cf2_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESE 283 (806)
T ss_dssp CCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CEEEEEEHHHHHSSCTTHHH
T ss_pred hcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CeEEEEEhHHhhcccchHHH
Confidence 46888888887776655 332 445679999999999999999999999998 56888998888887777665
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCCccce--eEEE---eccchhhhccccccchhhhcccCCCCCCCHHhhc-
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGSKVGK--LTMK---TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD- 138 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s- 138 (174)
..+ ...|..++++|+|.+....+...+. .... ...+.......++++ |++| |++..+++++++
T Consensus 284 ~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V--IaaT-N~~d~LD~ALrR~ 360 (806)
T 3cf2_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV--MAAT-NRPNSIDPALRRF 360 (806)
T ss_dssp HHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE--EEEC-SSTTTSCTTTTST
T ss_pred HHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE--EEec-CChhhcCHHHhCC
Confidence 222 2346678888999885443211111 0111 112222223334444 5565 899999999998
Q ss_pred -ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 139 -RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 139 -R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
|| ..|+++.|+.++..+|++.++.+.
T Consensus 361 GRFd~~I~i~~Pd~~~R~~IL~~~l~~~ 388 (806)
T 3cf2_A 361 GRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHTCSSS
T ss_pred cccceEEecCCCCHHHHHHHHHHHhcCC
Confidence 99 889999999999999999877543
No 12
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=2.7e-18 Score=140.31 Aligned_cols=160 Identities=23% Similarity=0.329 Sum_probs=100.2
Q ss_pred CCchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS---------LEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------~~~~~ 70 (174)
++|++++++.+......-. +...++.+++|+||||||||++|+++|..++. ++..++++.... .+++.
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC-----------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEecccchhhhhhhHHHHHhcc
Confidence 5899999988765443222 23335679999999999999999999999974 355555543221 11111
Q ss_pred hh-------hhhhhccCcEEEEEEeccCCCCCCcc-----------ceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616 71 TE-------EETEMIEGEVVEIQIERPATGLGSKV-----------GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI 132 (174)
Q Consensus 71 ~~-------~~~~~~~~~i~~~~id~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 132 (174)
.. ..+....+.++++|+|++........ ++..|.........++.+.++ |+|+ |+...+
T Consensus 161 ~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i--I~tt-N~~~~l 237 (543)
T 3m6a_A 161 MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF--IATA-NNLATI 237 (543)
T ss_dssp ---CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE--EEEC-SSTTTS
T ss_pred CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE--Eecc-CccccC
Confidence 11 11112334667788988743321001 111222222333334455555 5565 899999
Q ss_pred CHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 133 PIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 133 ~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
+++|++||.++++++|+.++..+|++.++.++.
T Consensus 238 ~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~ 270 (543)
T 3m6a_A 238 PGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQ 270 (543)
T ss_dssp CHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHH
T ss_pred CHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875543
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=129.68 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=99.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcC-------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGK-------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~-------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
|+|++++++.+..+...+.... .++.+++|+||||||||++|+++|+.++. +++.+++..+.....+...
T Consensus 8 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV--PFLAMAGAEFVEVIGGLGAA 85 (262)
T ss_dssp SCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--CEEEEETTTTSSSSTTHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHHHhhccChhHH
Confidence 6899999999988887765432 34579999999999999999999999984 5777777666543333222
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCCc--------cceeEEEeccchhhhc---cccccchhhhcccCCCCCCCH
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGSK--------VGKLTMKTTEMETSYD---LGAKMIEAIGTAYSSPHGIPI 134 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~ 134 (174)
..+ ...++.++++|+|.+....... .+.. ....+..... ..+.++ ++++ |.+..+++
T Consensus 86 ~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~--l~~ll~~~~~~~~~~~~~v--i~~t-n~~~~ld~ 160 (262)
T 2qz4_A 86 RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQT--LNQLLVEMDGMGTTDHVIV--LAST-NRADILDG 160 (262)
T ss_dssp HHHHHHHHHHHTCSEEEEEECC-------------------CHH--HHHHHHHHHTCCTTCCEEE--EEEE-SCGGGGGS
T ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHH--HHHHHHHhhCcCCCCCEEE--EecC-CChhhcCH
Confidence 111 1124567788998874332100 0000 0000111111 122333 5555 78888999
Q ss_pred Hhhc--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 135 DLLD--RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 135 ~l~s--R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
++++ || ..++++.|+.++..++++.++.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 9998 99 88999999999999999988754
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.77 E-value=5.4e-19 Score=141.29 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=98.1
Q ss_pred CCchHHHHHHHHHHHHHH-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|+|++.+++.+......- ..+..+++++||+||||||||++|+++|..+ + .+++.+++..+.+.+.+..+
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~v~~~~l~~~~~g~~~ 213 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISSSDLVSKWLGESE 213 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS--SEEEEECCC---------CC
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeHHHHHhhhcchHH
Confidence 689999997776655221 1233456899999999999999999999998 4 45777887777665554433
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCCccc--eeEEEeccchhhhc----cccccchhhhcccCCCCCCCHHhhc
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGSKVG--KLTMKTTEMETSYD----LGAKMIEAIGTAYSSPHGIPIDLLD 138 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~l~~~l~s 138 (174)
..+ ...++.++++|+|.+......... ...+....+..... ..+.++ |+++ |.+..+++++++
T Consensus 214 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v--I~at-n~~~~ld~al~r 290 (444)
T 2zan_A 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV--LGAT-NIPWVLDSAIRR 290 (444)
T ss_dssp CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE--EEEE-SCGGGSCHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE--EecC-CCccccCHHHHh
Confidence 111 123456777788877433211100 00111111111111 123333 5555 888999999999
Q ss_pred ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 139 RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 139 R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
|| .++.++.|+.++...|++.++.+
T Consensus 291 Rf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 291 RFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred hcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 99 78999999999999999998744
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.77 E-value=3.4e-19 Score=138.69 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=100.9
Q ss_pred CCchHHHHHHHHHHHHHH-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|+|++.+++.+....... +.+..+++++||+||||||||++|+++|+.++ .+++.+++..+.+.+.+..+.
T Consensus 53 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~v~~~~l~~~~~g~~~~ 130 (355)
T 2qp9_X 53 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESEK 130 (355)
T ss_dssp SCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEEEHHHHHSCC---CHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEeeHHHHhhhhcchHHH
Confidence 689999997777655332 12334567999999999999999999999998 457777777665554444331
Q ss_pred -------hh-hhccCcEEEEEEeccCCCCCCccce--eEEEecc---chhhhc-cccccchhhhcccCCCCCCCHHhhcc
Q psy14616 74 -------ET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTE---METSYD-LGAKMIEAIGTAYSSPHGIPIDLLDR 139 (174)
Q Consensus 74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~---~~~~~~-~~~~~~~~i~~~~~~~~~l~~~l~sR 139 (174)
.+ ...++.++++|+|.+....+..... ..+.... +..... ..+.++ |+++ |.+..+++++++|
T Consensus 131 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v--I~at-n~~~~ld~al~rR 207 (355)
T 2qp9_X 131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV--LGAT-NIPWQLDSAIRRR 207 (355)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE--EEEE-SCGGGSCHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE--Eeec-CCcccCCHHHHcc
Confidence 11 1135567888998874332111000 0000111 111111 122333 5555 8889999999999
Q ss_pred e-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 140 M-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 140 ~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
| ..+.++.|+.++..+|++.++.+
T Consensus 208 f~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 208 FERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 9 88999999999999999988754
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.76 E-value=5.2e-19 Score=134.80 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=104.7
Q ss_pred CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|+|++.+++.+..+.... ..|..++++++|+||||||||++|+++|..++ .+++.+++..+.+...+...
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l~~~~~g~~~ 94 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESE 94 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHHHHHHHTTCT
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHHHhhhcCchH
Confidence 689999998887766542 23455678999999999999999999999997 55788887776655554433
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCC----Cccce-eEEEec---cchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLG----SKVGK-LTMKTT---EMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~----~~~~~-~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
+.+ ...++.++++|+|.+....+ +..+. ...... .+.......+..+ |+++ |.+..+++++
T Consensus 95 ~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v--i~at-n~~~~ld~al 171 (301)
T 3cf0_A 95 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI--IGAT-NRPDIIDPAI 171 (301)
T ss_dssp THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE--EEEE-SCGGGSCGGG
T ss_pred HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE--EEec-CCccccChHH
Confidence 112 22345677778886622110 00000 000000 1111111223333 5565 8888999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++ || ..++++.|+.++..+|++.++.+.
T Consensus 172 ~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~ 202 (301)
T 3cf0_A 172 LRPGRLDQLIYIPLPDEKSRVAILKANLRKS 202 (301)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCccceEEecCCcCHHHHHHHHHHHHccC
Confidence 98 99 789999999999999999887543
No 17
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.76 E-value=1.9e-18 Score=138.05 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=99.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhh---
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEM--- 77 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (174)
+|||++++.....+...++.+.. ++++|+||||||||++|+++|+.+++ ++..+++......++......+..
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~--~~vLL~GppGtGKTtlAr~ia~~~~~--~f~~l~a~~~~~~~ir~~~~~a~~~~~ 103 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHL--HSMILWGPPGTGKTTLAEVIARYANA--DVERISAVTSGVKEIREAIERARQNRN 103 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCC--CEEEEECSTTSSHHHHHHHHHHHTTC--EEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHhchHHHHHHHHcCCC--cEEEEECCCCCcHHHHHHHHHHHhCC--CeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence 68999999666677777788876 59999999999999999999999984 466776654433333333222211
Q ss_pred --ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHH
Q psy14616 78 --IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA 155 (174)
Q Consensus 78 --~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 155 (174)
..+.++++|+|.+ +. ..+... ....+.....+ ..+|+.|....++++++|||.++.|.+++.+++.+
T Consensus 104 ~~~~~iLfIDEI~~l-~~---~~q~~L------L~~le~~~v~l-I~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~ 172 (447)
T 3pvs_A 104 AGRRTILFVDEVHRF-NK---SQQDAF------LPHIEDGTITF-IGATTENPSFELNSALLSRARVYLLKSLSTEDIEQ 172 (447)
T ss_dssp TTCCEEEEEETTTCC----------CC------HHHHHTTSCEE-EEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHH
T ss_pred cCCCcEEEEeChhhh-CH---HHHHHH------HHHHhcCceEE-EecCCCCcccccCHHHhCceeEEeeCCcCHHHHHH
Confidence 1334566677666 33 222211 11112233333 13444455578999999999999999999999999
Q ss_pred HHHHHhch
Q psy14616 156 ILKIRLVK 163 (174)
Q Consensus 156 il~~~l~~ 163 (174)
++++.+.+
T Consensus 173 il~~~l~~ 180 (447)
T 3pvs_A 173 VLTQAMED 180 (447)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998765
No 18
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.76 E-value=3.4e-20 Score=156.20 Aligned_cols=160 Identities=23% Similarity=0.297 Sum_probs=105.6
Q ss_pred CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.|.....+. +.|..+++++|||||||||||++|+++|.+++ .+|+.++.+++.+.++++.+
T Consensus 479 iggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~f~~v~~~~l~s~~vGese 556 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESE 556 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CEEEECCHHHHHTTTCSSCH
T ss_pred hCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--CceEEeccchhhccccchHH
Confidence 467899997766554332 22555678999999999999999999999998 56889999999998888876
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCC----ccc-eeEEEecc---chhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGS----KVG-KLTMKTTE---METSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~----~~~-~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
+.+ ...|+.++++|+|.+....+. +.+ .-...... ++......++++ +++| |++..+++++
T Consensus 557 ~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~v--i~aT-N~p~~lD~Al 633 (806)
T 3cf2_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI--IGAT-NRPDIIDPAI 633 (806)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEE--ECC--CCSSSSCHHH
T ss_pred HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEE--EEeC-CCchhCCHhH
Confidence 223 234677888899988544311 111 11111222 222222233333 5555 9999999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE 165 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~ 165 (174)
++ || ..|+++.|+.++..+|++.++.+..
T Consensus 634 lRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~ 665 (806)
T 3cf2_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 665 (806)
T ss_dssp HSTTTSCCEEEC-----CHHHHTTTTTSSCC-
T ss_pred cCCCcceEEEEECCcCHHHHHHHHHHHhcCCC
Confidence 98 99 8899999999999999998876543
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=134.68 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=98.1
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
|+|++.+++.+..+...... ...+++++||+||||||||++|+++|+.++ .+++.+++..+...+.+...
T Consensus 117 iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~~~~~g~~~~ 194 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--ATFFNISAASLTSKYVGEGEK 194 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--CEEEEECSCCC-------CHH
T ss_pred hCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--CcEEEeeHHHhhccccchHHH
Confidence 68999999877766544322 112457999999999999999999999998 45888888877665554433
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCCccce--eEEEecc---chhhhcc--ccccchhhhcccCCCCCCCHHhhc
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTE---METSYDL--GAKMIEAIGTAYSSPHGIPIDLLD 138 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~---~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~s 138 (174)
..+ ...++.++++|+|.++......... ..+.... +...... .+.++ |+++ |.+..+++++++
T Consensus 195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v--I~at-n~~~~l~~~l~~ 271 (389)
T 3vfd_A 195 LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV--MGAT-NRPQELDEAVLR 271 (389)
T ss_dssp HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE--EEEE-SCGGGCCHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE--EEec-CCchhcCHHHHc
Confidence 112 1224567788888874332111000 0000001 1111111 12233 5565 888999999999
Q ss_pred ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 139 RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 139 R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
|| .++.++.|+.++..++++..+.+
T Consensus 272 R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 272 RFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 99 68999999999999999987644
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=4e-18 Score=128.52 Aligned_cols=158 Identities=25% Similarity=0.286 Sum_probs=102.5
Q ss_pred CCchHHHHHHHHHHHHHHHh--------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKE--------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~--------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
++|++.+++.+..+...... |..++.++||+||||||||++|+++|+.++ .++..+++..+.....+...
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~~~~~v~~~~~~~~~~~~~~ 96 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--ATFIRVVGSELVKKFIGEGA 96 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--CEEEEEEGGGGCCCSTTHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehHHHHHhccchHH
Confidence 68999999887766544321 234568999999999999999999999998 45777777766655544433
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCC------cc-ceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGS------KV-GKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~------~~-~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
. .+ ...++.++++|+|.+.....+ .. +...+. ...+.......+..+ |+++ |.+..+++++
T Consensus 97 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v--I~tt-n~~~~l~~~l 173 (285)
T 3h4m_A 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI--IGAT-NRPDILDPAI 173 (285)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE--EEEC-SCGGGBCHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE--EEeC-CCchhcCHHH
Confidence 1 11 112346777788877332211 00 010000 000010111123333 5565 8889999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
++ || .++.++.|+.++..++++.++..
T Consensus 174 ~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 174 LRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp HSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 98 99 68999999999999999987654
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.74 E-value=2.5e-18 Score=130.93 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=99.2
Q ss_pred CCchHHHHHHHHHHHHHHHh-------c---CcCCceEEEEcCCCCcHHHHHHHHHHHhCC-----CCCeeeecccccch
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------G---KIAGRAILLAGQPGTGKTAIAMGLAQALGP-----DTPFTSMAGSEIYS 65 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g---~~~~~~~ll~GppG~GKT~la~~la~~l~~-----~~~~~~~~~~~~~~ 65 (174)
|+|++.+++.+..+...... | ..++.++||+||||||||++|+++|+.++. ..+++.+++..+.+
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~ 112 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG 112 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh
Confidence 68999999988877665431 1 233568999999999999999999998843 23577777776655
Q ss_pred hhhhhhhhh-h----hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCC-----CCCC
Q psy14616 66 LEMNKTEEE-T----EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSP-----HGIP 133 (174)
Q Consensus 66 ~~~~~~~~~-~----~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~-----~~l~ 133 (174)
...+..... . ...++.++++|+|.+............... .+....+.. +..+ |+++ +.. ..++
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~-~Ll~~l~~~~~~~~~--i~~~-~~~~~~~~~~~~ 188 (309)
T 3syl_A 113 QYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIE-ILLQVMENNRDDLVV--ILAG-YADRMENFFQSN 188 (309)
T ss_dssp SSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHH-HHHHHHHHCTTTCEE--EEEE-CHHHHHHHHHHS
T ss_pred hcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHH-HHHHHHhcCCCCEEE--EEeC-ChHHHHHHHhhC
Confidence 444433211 1 123566777888887433210000000000 011111111 2233 4454 222 1357
Q ss_pred HHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 134 IDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 134 ~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
|+|++|| .+++|++|+.+++.++++.++.+
T Consensus 189 ~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 189 PGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp TTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999998754
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-17 Score=126.82 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=100.4
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|+|++.+++.+......... ...++++++|+||||||||++|+++|+.++ .++..+++..+...+.+....
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~~~~~~~~~ 100 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--ATFLNISAASLTSKYVGDGEK 100 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--CEEEEEESTTTSSSSCSCHHH
T ss_pred hCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCeEEeeHHHHhhcccchHHH
Confidence 68999999877766543221 112458999999999999999999999997 457777877666544443321
Q ss_pred -------hh-hhccCcEEEEEEeccCCCCCCccce--eEEEeccchhhhcc------ccccchhhhcccCCCCCCCHHhh
Q psy14616 74 -------ET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTEMETSYDL------GAKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
.+ ...++.++++|+|.+.......... .......+...... .+.++ ++++ |.+..++++++
T Consensus 101 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v--i~~t-n~~~~l~~~l~ 177 (297)
T 3b9p_A 101 LVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV--LAAT-NRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE--EEEE-SCGGGBCHHHH
T ss_pred HHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE--Eeec-CChhhCCHHHH
Confidence 11 1234567778888874432110000 00000000011111 12233 5555 78889999999
Q ss_pred cce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 138 DRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 138 sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+|| ..+.++.|+.++...+++..+.+
T Consensus 178 ~R~~~~i~~~~p~~~~r~~il~~~~~~ 204 (297)
T 3b9p_A 178 RRFTKRVYVSLPDEQTRELLLNRLLQK 204 (297)
T ss_dssp HHCCEEEECCCCCHHHHHHHHHHHHGG
T ss_pred hhCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 999 78999999999999999887644
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.72 E-value=2.4e-17 Score=132.32 Aligned_cols=159 Identities=23% Similarity=0.281 Sum_probs=105.1
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
|+|++++++.+..+...++. |...+++++|+||||||||++|+++|..++ .+|..+++.++.....+...
T Consensus 18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~f~~is~~~~~~~~~g~~~~ 95 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPFFHISGSDFVELFVGVGAA 95 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGTTTCCTTHHHH
T ss_pred hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCeeeCCHHHHHHHHhcccHH
Confidence 68999999998888777653 233457899999999999999999999998 56888888777665544322
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCCc------c--ceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGSK------V--GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
..+ ...|+.++++|+|.+....+.. . +.+.-....++......+.++ |+++ |++..++++++
T Consensus 96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV--IaaT-n~~~~Ld~all 172 (476)
T 2ce7_A 96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV--MAAT-NRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE--EEEE-SCGGGSCGGGG
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE--EEec-CChhhhchhhc
Confidence 112 1235567788888874332110 0 000000001111111122333 5555 88888999998
Q ss_pred c--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 138 D--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
+ || ..+.++.|+.++..+|++.++.+.
T Consensus 173 R~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~ 202 (476)
T 2ce7_A 173 RPGRFDKKIVVDPPDMLGRKKILEIHTRNK 202 (476)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred ccCcceeEeecCCCCHHHHHHHHHHHHHhC
Confidence 6 99 689999999999999998877543
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=1.8e-17 Score=123.30 Aligned_cols=158 Identities=19% Similarity=0.282 Sum_probs=100.2
Q ss_pred CCchHHHHHHHHHHHHHHHhc-------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEG-------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g-------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
|+|++.+++.+..+...+... ...+++++|+||||||||++|+++|..++ .+++.+++..+.....+...
T Consensus 14 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~i~~~~~~~~~~~~~~~ 91 (257)
T 1lv7_A 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVEMFVGVGAS 91 (257)
T ss_dssp SCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEECSCSSTTSCCCCCHH
T ss_pred hcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CCEEEEeHHHHHHHhhhhhHH
Confidence 689999999988877766532 22357899999999999999999999997 45777777666544333221
Q ss_pred ------hhhh-hccCcEEEEEEeccCCCCCCcc--ce---eEEEecc---chhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616 73 ------EETE-MIEGEVVEIQIERPATGLGSKV--GK---LTMKTTE---METSYDLGAKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 73 ------~~~~-~~~~~i~~~~id~~~~~~~~~~--~~---~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
+.+. ..++.++++++|.+....+... +. ....... ++......+.++ |+++ |.+..++++++
T Consensus 92 ~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v--I~~t-n~~~~l~~~l~ 168 (257)
T 1lv7_A 92 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV--IAAT-NRPDVLDPALL 168 (257)
T ss_dssp HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE--EEEE-SCTTTSCGGGG
T ss_pred HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEE--EEee-CCchhCCHHHc
Confidence 1121 1234566667776633221100 00 0000000 111111122333 5555 78889999999
Q ss_pred c--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 138 D--RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 138 s--R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+ || ..+.++.|+.++..++++.++.+
T Consensus 169 r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 169 RPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 7 99 78999999999999999887643
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=129.88 Aligned_cols=158 Identities=19% Similarity=0.172 Sum_probs=101.4
Q ss_pred CCchHHHHHHHHHHHHHH-Hh------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI-KE------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~-~~------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
|+|++.+++.+....... .. ...+++++||+||||||||++|+++|+.++ .+++.+++..+...+.+....
T Consensus 86 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~i~~~~l~~~~~g~~~~ 163 (357)
T 3d8b_A 86 IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--ATFFSISASSLTSKWVGEGEK 163 (357)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--CEEEEEEGGGGCCSSTTHHHH
T ss_pred hCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--CeEEEEehHHhhccccchHHH
Confidence 689999997777665431 11 123458999999999999999999999997 457888887776655444331
Q ss_pred -------hhh-hccCcEEEEEEeccCCCCCCccc--eeEEEeccchhhhc-----cccccchhhhcccCCCCCCCHHhhc
Q psy14616 74 -------ETE-MIEGEVVEIQIERPATGLGSKVG--KLTMKTTEMETSYD-----LGAKMIEAIGTAYSSPHGIPIDLLD 138 (174)
Q Consensus 74 -------~~~-~~~~~i~~~~id~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~l~~~l~s 138 (174)
.+. ..++.++++|+|.+......... ........+..... ..+.++ |+++ |.+..+++++++
T Consensus 164 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~v--I~at-n~~~~l~~~l~~ 240 (357)
T 3d8b_A 164 MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV--VGAT-NRPQEIDEAARR 240 (357)
T ss_dssp HHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEE--EEEE-SCGGGBCHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEE--EEec-CChhhCCHHHHh
Confidence 111 12456777888877433211000 00000011111111 112333 5565 888899999999
Q ss_pred ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 139 RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 139 R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
|| ..+.++.|+.++..++++..+..
T Consensus 241 Rf~~~i~i~~p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 241 RLVKRLYIPLPEASARKQIVINLMSK 266 (357)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hCceEEEeCCcCHHHHHHHHHHHHhh
Confidence 99 68899999999999999887643
No 26
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.71 E-value=2.6e-17 Score=126.94 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=98.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh-hh-c
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET-EM-I 78 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 78 (174)
++|++.+++.+..+....+....+..++||+||||||||++|+++|+.++.. ++.+++..... .+...... .. .
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~ 106 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN--IKTTAAPMIEK--SGDLAAILTNLSE 106 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC--EEEEEGGGCCS--HHHHHHHHHTCCT
T ss_pred hCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEecchhccc--hhHHHHHHHhccC
Confidence 6899999988888777666544455799999999999999999999999844 66666654321 11111111 11 2
Q ss_pred cCcEEEEEEeccCCCCCC------ccceeEEE--ecc--chhhhccccccchhhhcccCCCCCCCHHhhcce-eeEecCC
Q psy14616 79 EGEVVEIQIERPATGLGS------KVGKLTMK--TTE--METSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQP 147 (174)
Q Consensus 79 ~~~i~~~~id~~~~~~~~------~~~~~~~~--~~~--~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~ 147 (174)
.+.++++|+|.+...... +....... ... .....+.++..+ |+++ |....+++++++|| .++.+++
T Consensus 107 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~at-n~~~~l~~~L~~R~~~~i~l~~ 183 (338)
T 3pfi_A 107 GDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL--IGAT-TRAGMLSNPLRDRFGMQFRLEF 183 (338)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE--EEEE-SCGGGSCHHHHTTCSEEEECCC
T ss_pred CCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE--EEeC-CCccccCHHHHhhcCEEeeCCC
Confidence 345677788876211000 00000000 000 001112222333 5565 67778999999999 8999999
Q ss_pred CCHHHHHHHHHHHhch
Q psy14616 148 YQDEEIQAILKIRLVK 163 (174)
Q Consensus 148 ~~~~e~~~il~~~l~~ 163 (174)
|+.+++.++++.....
T Consensus 184 ~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 184 YKDSELALILQKAALK 199 (338)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999987643
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.70 E-value=7.5e-18 Score=126.00 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=98.6
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
++|++.+++.+..+...+.. +...+++++|+||||||||++|+++|+.++. +++.+++..+.....+...
T Consensus 13 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~v~~~~~~~~~~~~~~~ 90 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PFFSMGGSSFIEMFVGLGAS 90 (268)
T ss_dssp SSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CCCCCCSCTTTTSCSSSCSS
T ss_pred hCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEEEechHHHHHhhcchHHH
Confidence 68999999888877765542 3334578999999999999999999999984 4566666555443322211
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCCc---cce---eEEEeccchhhhcc----ccccchhhhcccCCCCCCCHH
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGSK---VGK---LTMKTTEMETSYDL----GAKMIEAIGTAYSSPHGIPID 135 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~~---~~~---~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~l~~~ 135 (174)
..+ ...++.++++|+|.+....... ... .......+...... .+.++ ++++ |.+..++++
T Consensus 91 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v--i~tt-n~~~~ld~~ 167 (268)
T 2r62_A 91 RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV--LAAT-NRPEILDPA 167 (268)
T ss_dssp SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEE--EECB-SCCTTSCGG
T ss_pred HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEE--EEec-CCchhcCHh
Confidence 111 1234667778888873321000 000 00000001111111 11223 5555 888889999
Q ss_pred hhc--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 136 LLD--RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 136 l~s--R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+++ || ..++++.|+.++..++++.++.+
T Consensus 168 l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 168 LMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp GGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred HcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 998 88 78999999999999999887643
No 28
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.70 E-value=2.3e-17 Score=133.09 Aligned_cols=158 Identities=22% Similarity=0.238 Sum_probs=105.1
Q ss_pred CCchHHHHHHHHHHHHHHH--------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIK--------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~--------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|+|++.+++.+..+..... -|..++.++||+||||||||++|+++|+.++ .+|+.+++..+.+...+...
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~vn~~~l~~~~~g~~~ 283 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESE 283 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SEEEEEEHHHHHTSCTTHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CCEEEEEchHhhhhhcchhH
Confidence 5899999987776665431 1344568999999999999999999999997 56888888777665554443
Q ss_pred h-------hh-hhccCcEEEEEEeccCCCCCCcccee--EEEe---ccchhhhccccccchhhhcccCCCCCCCHHhhc-
Q psy14616 73 E-------ET-EMIEGEVVEIQIERPATGLGSKVGKL--TMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD- 138 (174)
Q Consensus 73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s- 138 (174)
. .+ ...++.++++|+|.+....+...+.. .+.. ..+.......+..+ |+++ |++..+++++++
T Consensus 284 ~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v--IaaT-n~~~~Ld~al~r~ 360 (489)
T 3hu3_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV--MAAT-NRPNSIDPALRRF 360 (489)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE--EEEE-SCGGGBCGGGGST
T ss_pred HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE--EEec-CCccccCHHHhCC
Confidence 1 11 12345778888888744321111100 0000 01111111123333 5555 888889999998
Q ss_pred -ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 139 -RM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 139 -R~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
|| ..++++.|+.++..++++.++..
T Consensus 361 gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 361 GRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred CcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 88 77999999999999999987754
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.69 E-value=4.4e-17 Score=123.70 Aligned_cols=134 Identities=14% Similarity=0.053 Sum_probs=78.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-----hhccCcEEEEEEecc
Q psy14616 23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-----EMIEGEVVEIQIERP 90 (174)
Q Consensus 23 ~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~i~~~~id~~ 90 (174)
.++.++||+||||||||++|+++|+.++ .+++.++++.+.+.+.+... ..+ ...++.++++|+|++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT--CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 3457999999999999999999999998 45788887777665554433 111 224677888999988
Q ss_pred CCCCCCccc---------ee--EEEe-------ccchhhhccccccchhhhcccCCCCCCCHHhhc--cee-eEecCCCC
Q psy14616 91 ATGLGSKVG---------KL--TMKT-------TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--RMV-IIPTQPYQ 149 (174)
Q Consensus 91 ~~~~~~~~~---------~~--~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--R~~-~i~~~~~~ 149 (174)
....+...+ .. .+.+ ..........+..+ |+|+ |.+..+++++++ ||. .+.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~v--I~tt-N~~~~ld~al~R~~R~d~~i~~--P~ 186 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI--IVTG-NDFSTLYAPLIRDGRMEKFYWA--PT 186 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCE--EEEC-SSCCC--CHHHHHHHEEEEEEC--CC
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEE--EEec-CCcccCCHHHhCCCCCceeEeC--cC
Confidence 543211111 00 0000 00001112334444 6666 899999999994 884 4553 49
Q ss_pred HHHHHHHHHHHhch
Q psy14616 150 DEEIQAILKIRLVK 163 (174)
Q Consensus 150 ~~e~~~il~~~l~~ 163 (174)
.++..+|++.++..
T Consensus 187 ~~~r~~Il~~~~~~ 200 (293)
T 3t15_A 187 REDRIGVCTGIFRT 200 (293)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccC
Confidence 99999999987754
No 30
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=2.5e-16 Score=119.56 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=94.3
Q ss_pred CCchHHHHHHHHHHHHHH----------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch-hhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI----------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS-LEMN 69 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~----------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~ 69 (174)
|+||+.+++.+....... ..+. .+++++|+||||||||++|+++|+.++. +++.+++..+.. .+.+
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKT~la~~la~~l~~--~~~~i~~~~~~~~~~~~ 93 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEV-TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVG 93 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHC-CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGGSSCCSGG
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccC-CCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEEcchhcccCCccC
Confidence 689999998777555331 1122 3579999999999999999999999974 467777665543 1111
Q ss_pred h-----hhhhhh---------hccCcEEEEEEeccCCCCCCcc--------ceeEEE--ec----cchhhhccccccchh
Q psy14616 70 K-----TEEETE---------MIEGEVVEIQIERPATGLGSKV--------GKLTMK--TT----EMETSYDLGAKMIEA 121 (174)
Q Consensus 70 ~-----~~~~~~---------~~~~~i~~~~id~~~~~~~~~~--------~~~~~~--~~----~~~~~~~~~~~~~~~ 121 (174)
. ..+... ..++.++++|+|++........ ++..+. +. .........+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~-- 171 (310)
T 1ofh_A 94 KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF-- 171 (310)
T ss_dssp GSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE--
T ss_pred ccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE--
Confidence 1 011000 1246778889988843321000 110000 00 0000111223344
Q ss_pred hhcc---cCCCCCCCHHhhcce-eeEecCCCCHHHHHHHHHH
Q psy14616 122 IGTA---YSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKI 159 (174)
Q Consensus 122 i~~~---~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~ 159 (174)
++++ .+.+..+++++++|| ..+.|++|+.+++.++++.
T Consensus 172 i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred EEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 5554 356677999999999 6799999999999999984
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=7.7e-17 Score=123.65 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=89.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-hhhhh--
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-EETEM-- 77 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 77 (174)
++|+++++ ..+..+++.+..+ +.+|++||||||||++|+++|+.++. .+..++++......+.... +.+..
T Consensus 28 ivg~~~~~---~~l~~~l~~~~~~-~~~L~~G~~G~GKT~la~~la~~l~~--~~~~i~~~~~~~~~i~~~~~~~~~~~~ 101 (324)
T 3u61_B 28 CILPAFDK---ETFKSITSKGKIP-HIILHSPSPGTGKTTVAKALCHDVNA--DMMFVNGSDCKIDFVRGPLTNFASAAS 101 (324)
T ss_dssp SCCCHHHH---HHHHHHHHTTCCC-SEEEECSSTTSSHHHHHHHHHHHTTE--EEEEEETTTCCHHHHHTHHHHHHHBCC
T ss_pred HhCcHHHH---HHHHHHHHcCCCC-eEEEeeCcCCCCHHHHHHHHHHHhCC--CEEEEcccccCHHHHHHHHHHHHhhcc
Confidence 68999998 4555556677655 67888999999999999999999974 4677776553322222211 11111
Q ss_pred ---ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHH
Q psy14616 78 ---IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEE 152 (174)
Q Consensus 78 ---~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e 152 (174)
..+.++++|+|.+... +.++.. ....+. .+..+ ++++ |.+..+++++++||.+++|++|+.++
T Consensus 102 ~~~~~~vliiDEi~~l~~~---~~~~~L------~~~le~~~~~~~i--I~~~-n~~~~l~~~l~sR~~~i~~~~~~~~e 169 (324)
T 3u61_B 102 FDGRQKVIVIDEFDRSGLA---ESQRHL------RSFMEAYSSNCSI--IITA-NNIDGIIKPLQSRCRVITFGQPTDED 169 (324)
T ss_dssp CSSCEEEEEEESCCCGGGH---HHHHHH------HHHHHHHGGGCEE--EEEE-SSGGGSCTTHHHHSEEEECCCCCHHH
T ss_pred cCCCCeEEEEECCcccCcH---HHHHHH------HHHHHhCCCCcEE--EEEe-CCccccCHHHHhhCcEEEeCCCCHHH
Confidence 1234555677666202 122211 111111 22333 4555 77888999999999999999999998
Q ss_pred HHHHHHHH
Q psy14616 153 IQAILKIR 160 (174)
Q Consensus 153 ~~~il~~~ 160 (174)
+.++++..
T Consensus 170 ~~~il~~~ 177 (324)
T 3u61_B 170 KIEMMKQM 177 (324)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665553
No 32
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=116.13 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=97.3
Q ss_pred CCchHHHHHHHHHHHH-HH------H-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLG-MI------K-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~-~~------~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|.|.+++++.+..... -. + -+...+++++|+||||||||++++++|..++. .++.+++..+.+.+.+...
T Consensus 12 i~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~ 89 (274)
T 2x8a_A 12 IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESE 89 (274)
T ss_dssp CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHH
Confidence 5688999987765321 11 1 13344578999999999999999999999875 4677777666554443322
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCCcccee--EEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhc--
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGSKVGKL--TMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLD-- 138 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~s-- 138 (174)
+.+ ...+..++++++|.+....+...... ............. ...++ .++++ |++..+++++++
T Consensus 90 ~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i-~ia~t-n~p~~LD~al~r~g 167 (274)
T 2x8a_A 90 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF-IMAAT-NRPDIIDPAILRPG 167 (274)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE-EEEEE-SCGGGSCHHHHSTT
T ss_pred HHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE-EEeec-CChhhCCHhhcCcc
Confidence 222 33455677788877633221110000 0000000111100 11222 14444 899999999997
Q ss_pred ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 RM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 R~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
|| ..|+++.|+.++..+|++.++.
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 99 8899999999999999998764
No 33
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.64 E-value=7.2e-16 Score=124.43 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=102.1
Q ss_pred CCchHHHHHHHHHHHHHHHhc-------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEG-------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g-------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 72 (174)
|+|+++++..+..+...+... ...+++++|+||||||||++|+++|..++ .+++.+++..+.....+...
T Consensus 33 v~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~ 110 (499)
T 2dhr_A 33 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA 110 (499)
T ss_dssp SCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHH
Confidence 689999999998888776542 22357899999999999999999999987 56888887776554433322
Q ss_pred ------hhh-hhccCcEEEEEEeccCCCCCCc--ccee---EEEeccchhhhc--cccccchhhhcccCCCCCCCHHhhc
Q psy14616 73 ------EET-EMIEGEVVEIQIERPATGLGSK--VGKL---TMKTTEMETSYD--LGAKMIEAIGTAYSSPHGIPIDLLD 138 (174)
Q Consensus 73 ------~~~-~~~~~~i~~~~id~~~~~~~~~--~~~~---~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~l~~~l~s 138 (174)
+.+ ...++.++++++|.+....+.. ...- ......+..... ....++ .++++ |++..+++++++
T Consensus 111 ~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vi-viAat-n~p~~LD~aLlr 188 (499)
T 2dhr_A 111 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV-VMAAT-NRPDILDPALLR 188 (499)
T ss_dssp HHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCE-EEECC-SCGGGSCTTTSS
T ss_pred HHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEE-EEEec-CChhhcCccccc
Confidence 122 1235667788888773322110 0000 000000011111 111222 14454 788889999998
Q ss_pred --ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 --RM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 --R~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
|| ..+.++.|+.++..+|++.++.
T Consensus 189 ~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 189 PGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp TTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred ccccceEEecCCCCHHHHHHHHHHHHh
Confidence 67 7899999999999999987764
No 34
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=8.5e-16 Score=130.03 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=100.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCC----ceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhhh---hhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAG----RAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEMN---KTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~----~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~---~~~ 72 (174)
++||+.+++.+.......+.+...+ .++||+||||||||++|+++|+.+ +...+++.++++.+...... ...
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~ 572 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CH
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhh
Confidence 6899999988777776666554321 279999999999999999999998 44567888888776653322 111
Q ss_pred hhhhhcc-CcEEEEEEeccCCCCCCccceeEEE--ec-c----chhhhccccccchhhhcccCCCCC-----------CC
Q psy14616 73 EETEMIE-GEVVEIQIERPATGLGSKVGKLTMK--TT-E----METSYDLGAKMIEAIGTAYSSPHG-----------IP 133 (174)
Q Consensus 73 ~~~~~~~-~~i~~~~id~~~~~~~~~~~~~~~~--~~-~----~~~~~~~~~~~~~~i~~~~~~~~~-----------l~ 133 (174)
......+ +.++++|+|++ +. ..++..+. +. . .....+..+..+ |+|++..... +.
T Consensus 573 ~~~~~~~~~vl~lDEi~~~-~~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~i--I~ttn~~~~~~~~~~~~~~~~f~ 646 (758)
T 3pxi_A 573 EKVRRKPYSVVLLDAIEKA-HP---DVFNILLQVLEDGRLTDSKGRTVDFRNTIL--IMTSNVGASEKDKVMGELKRAFR 646 (758)
T ss_dssp HHHHHCSSSEEEEECGGGS-CH---HHHHHHHHHHHHSBCC-----CCBCTTCEE--EEEESSSTTCCHHHHHHHHHHSC
T ss_pred HHHHhCCCeEEEEeCcccc-CH---HHHHHHHHHhccCeEEcCCCCEeccCCeEE--EEeCCCChhhHHHHHHHHHhhCC
Confidence 2222233 45677788877 22 12221111 00 0 011223344555 6677322222 88
Q ss_pred HHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 134 IDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 134 ~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
|++++|| .++.|++|+.+++.+|++..+..
T Consensus 647 p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 647 PEFINRIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp HHHHTTSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred HHHHhhCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999987744
No 35
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.63 E-value=2.5e-15 Score=119.37 Aligned_cols=61 Identities=31% Similarity=0.548 Sum_probs=45.3
Q ss_pred CCchHHHHHHHHHHHHH-HHhc--------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616 1 MVGQLQARRAAGVVLGM-IKEG--------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-~~~g--------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~ 63 (174)
|+||+++++++...... ++.. ..+++++||+||||||||++|+++|+.++. ++..++++.+
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~--~~~~v~~~~~ 86 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 86 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGG
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC--Cceeecchhh
Confidence 69999999888765532 1111 124579999999999999999999999984 4666655443
No 36
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.62 E-value=9.5e-16 Score=119.48 Aligned_cols=90 Identities=28% Similarity=0.397 Sum_probs=60.5
Q ss_pred CCchHHHHHHHHHHHHHH----HhcC------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hhh
Q psy14616 1 MVGQLQARRAAGVVLGMI----KEGK------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EMN 69 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~----~~g~------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~ 69 (174)
|+||+.+++.+....... +.+. .++.++||+||||||||++|+++|+.++ .+++.++++.+... +.+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~--~~~~~~~~~~l~~~~~~g 94 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD--VPFTMADATTLTEAGYVG 94 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEechHHhccccccc
Confidence 689999998776655211 1111 1457999999999999999999999997 55888887665533 222
Q ss_pred hhh-----h---h-----hhhccCcEEEEEEeccCC
Q psy14616 70 KTE-----E---E-----TEMIEGEVVEIQIERPAT 92 (174)
Q Consensus 70 ~~~-----~---~-----~~~~~~~i~~~~id~~~~ 92 (174)
... . . ....++.++++|+|++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~ 130 (363)
T 3hws_A 95 EDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR 130 (363)
T ss_dssp HHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC
T ss_pred ccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc
Confidence 211 0 1 112356788889998743
No 37
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.62 E-value=1.8e-15 Score=115.13 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=96.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcC----cCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhh-----hh-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGK----IAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLE-----MN- 69 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~----~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~-----~~- 69 (174)
++||+.+++.+.........+. .+..+++|+||||||||++|+++|+.+.+ ..+++.++++.+.... ++
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 98 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA 98 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCC
Confidence 5899999977776665554432 12358999999999999999999999843 2456666665443211 00
Q ss_pred -----------hhhhhhhhcc-CcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCC-
Q psy14616 70 -----------KTEEETEMIE-GEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSS- 128 (174)
Q Consensus 70 -----------~~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~- 128 (174)
.........+ +.++++|+|++ +. ..++. .+.. ......+..+.++ |+++ |.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-~~---~~~~~Ll~~le~~~~~~-~~~~~~~~~~~ii--I~tt-n~~ 170 (311)
T 4fcw_A 99 PPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-HP---DVFNILLQMLDDGRLTD-SHGRTVDFRNTVI--IMTS-NLG 170 (311)
T ss_dssp CTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-CH---HHHHHHHHHHHHSEEEC-TTSCEEECTTEEE--EEEE-STT
T ss_pred CCccccccccchHHHHHHhCCCeEEEEeChhhc-CH---HHHHHHHHHHhcCEEEc-CCCCEEECCCcEE--EEec-ccC
Confidence 0001111123 45666777776 22 11111 1110 0111223344444 6666 44
Q ss_pred -------------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 129 -------------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 129 -------------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
...++++|++|| .++.+.+|+.+++.++++..+.+
T Consensus 171 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 171 SPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp HHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 335889999999 89999999999999999987754
No 38
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=3.8e-15 Score=126.00 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=99.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh----------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL---------- 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---------- 66 (174)
|+||+++++.+.......+.|.. |..++||+||||||||++|+++|+.++ .+++.++++.+...
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~--~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCEEEEechhhcchhhHhhhcCCC
Confidence 68999999888777766665543 334899999999999999999999997 45777776655331
Q ss_pred --hhhh-----hhhhhhhcc-CcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCCC
Q psy14616 67 --EMNK-----TEEETEMIE-GEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSPH 130 (174)
Q Consensus 67 --~~~~-----~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 130 (174)
+++. ........+ +.++++|+|++ +. +.++. .+.+. .....++.+.++ |+|+ |...
T Consensus 538 ~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-~~---~~~~~Ll~~le~~~~~~~-~g~~~~~~~~~i--I~ts-N~~~ 609 (758)
T 1r6b_X 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-HP---DVFNILLQVMDNGTLTDN-NGRKADFRNVVL--VMTT-NAGV 609 (758)
T ss_dssp SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-CH---HHHHHHHHHHHHSEEEET-TTEEEECTTEEE--EEEE-CSSC
T ss_pred CCCcCccccchHHHHHHhCCCcEEEEeCcccc-CH---HHHHHHHHHhcCcEEEcC-CCCEEecCCeEE--EEec-Ccch
Confidence 1111 011112233 45677788876 22 11111 11111 122233444555 6666 4432
Q ss_pred -------------------------CCCHHhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 131 -------------------------GIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 131 -------------------------~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
.+.|+|++|| .++.|++++.+++.+|++..+.
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp C-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHH
Confidence 5789999999 8899999999999999999775
No 39
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.61 E-value=2.7e-15 Score=115.77 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeeeccc---ccch
Q psy14616 11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSMAGS---EIYS 65 (174)
Q Consensus 11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~~~~---~~~~ 65 (174)
...+...+++|+.+ +.+||+||||+|||++|+++|+.+.+... +..+... ...+
T Consensus 11 ~~~l~~~i~~~~~~-~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~ 89 (334)
T 1a5t_A 11 FEKLVASYQAGRGH-HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLG 89 (334)
T ss_dssp HHHHHHHHHTTCCC-SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBC
T ss_pred HHHHHHHHHcCCcc-eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCC
Confidence 36677778888876 78999999999999999999999976532 1112111 0010
Q ss_pred -hhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhh
Q psy14616 66 -LEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLL 137 (174)
Q Consensus 66 -~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~ 137 (174)
..+....+.....+ + .++++++|.+ +. +.++.. ....+.+ +..+ |.++ +.+..++++++
T Consensus 90 i~~ir~l~~~~~~~~~~~~~kvviIdead~l-~~---~a~naL------Lk~lEep~~~~~~--Il~t-~~~~~l~~ti~ 156 (334)
T 1a5t_A 90 VDAVREVTEKLNEHARLGGAKVVWVTDAALL-TD---AAANAL------LKTLEEPPAETWF--FLAT-REPERLLATLR 156 (334)
T ss_dssp HHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-CH---HHHHHH------HHHHTSCCTTEEE--EEEE-SCGGGSCHHHH
T ss_pred HHHHHHHHHHHhhccccCCcEEEEECchhhc-CH---HHHHHH------HHHhcCCCCCeEE--EEEe-CChHhCcHHHh
Confidence 01111111111111 1 2344455555 22 112211 1112222 2344 4444 56788999999
Q ss_pred cceeeEecCCCCHHHHHHHHHHHh
Q psy14616 138 DRMVIIPTQPYQDEEIQAILKIRL 161 (174)
Q Consensus 138 sR~~~i~~~~~~~~e~~~il~~~l 161 (174)
|||+++.|.+++.+++.++++...
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc
Confidence 999999999999999999998864
No 40
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.60 E-value=1.6e-15 Score=116.02 Aligned_cols=151 Identities=22% Similarity=0.259 Sum_probs=93.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhh-hh-hc
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEE-TE-MI 78 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 78 (174)
+||++.+++.+..+.........++.+++|+||||||||++|+++++.++. ++..+++..... .+..... .. ..
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~~~--~~~l~~~l~~~~~ 89 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV--NLRVTSGPAIEK--PGDLAAILANSLE 89 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC--CEEEECTTTCCS--HHHHHHHHTTTCC
T ss_pred hhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC--CEEEEeccccCC--hHHHHHHHHHhcc
Confidence 689999998887777665543334579999999999999999999999984 455555544321 0111110 11 12
Q ss_pred -cCcEEEEEEeccCCCCCCcccee----------EEEeccc--hhh--hccccccchhhhcccCCCCCCCHHhhcce-ee
Q psy14616 79 -EGEVVEIQIERPATGLGSKVGKL----------TMKTTEM--ETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VI 142 (174)
Q Consensus 79 -~~~i~~~~id~~~~~~~~~~~~~----------~~~~~~~--~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~ 142 (174)
++.++++|+|.+ +. ..+.. ....... ... ...++..+ ++++ |....+++++.+|| .+
T Consensus 90 ~~~~l~lDEi~~l-~~---~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~--i~~t-~~~~~~~~~l~~R~~~~ 162 (324)
T 1hqc_A 90 EGDILFIDEIHRL-SR---QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL--IGAT-TRPGLITAPLLSRFGIV 162 (324)
T ss_dssp TTCEEEETTTTSC-CH---HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE--EEEE-SCCSSCSCSTTTTCSCE
T ss_pred CCCEEEEECCccc-cc---chHHHHHHHHHhhhhHHhccccccccccccCCCCEEE--EEeC-CCcccCCHHHHhcccEE
Confidence 334555566665 21 11110 0000000 000 01122233 5555 77788999999999 79
Q ss_pred EecCCCCHHHHHHHHHHHhc
Q psy14616 143 IPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 143 i~~~~~~~~e~~~il~~~l~ 162 (174)
+.+++++.+++.++++....
T Consensus 163 i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 163 EHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 41
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.59 E-value=9.5e-15 Score=114.28 Aligned_cols=61 Identities=30% Similarity=0.454 Sum_probs=45.7
Q ss_pred CCchHHHHHHHHHHH----HHHHhc---------------------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe
Q psy14616 1 MVGQLQARRAAGVVL----GMIKEG---------------------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF 55 (174)
Q Consensus 1 iiG~~~~~~~l~~~~----~~~~~g---------------------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~ 55 (174)
|+||+++++.+.... ...+.| ..+..+++|+||||||||++|+++|+.++. ++
T Consensus 23 viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--~~ 100 (376)
T 1um8_A 23 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI--PI 100 (376)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC--CE
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC--CE
Confidence 689999998887655 222211 123578999999999999999999999974 56
Q ss_pred eeeccccc
Q psy14616 56 TSMAGSEI 63 (174)
Q Consensus 56 ~~~~~~~~ 63 (174)
+.+++..+
T Consensus 101 ~~~~~~~~ 108 (376)
T 1um8_A 101 AISDATSL 108 (376)
T ss_dssp EEEEGGGC
T ss_pred EEecchhh
Confidence 77666554
No 42
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=2.1e-15 Score=115.26 Aligned_cols=145 Identities=21% Similarity=0.275 Sum_probs=88.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh-hh-hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM-NK-TEEET 75 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~-~~-~~~~~ 75 (174)
++||+++++.+ ..+++.+..+ +++|+||||||||++|+++++.+++. ..+..+++++..+.+. .. ..+..
T Consensus 27 ~~g~~~~~~~l---~~~l~~~~~~--~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1iqp_A 27 IVGQEHIVKRL---KHYVKTGSMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFA 101 (327)
T ss_dssp CCSCHHHHHHH---HHHHHHTCCC--EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHH
T ss_pred hhCCHHHHHHH---HHHHHcCCCC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHH
Confidence 68999998554 4556777654 69999999999999999999987432 2244555443322111 00 01111
Q ss_pred h---hc---cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616 76 E---MI---EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP 147 (174)
Q Consensus 76 ~---~~---~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~ 147 (174)
. .. ...++++++|.+ +. ..++.. ....+. .+..+ +.++ +.+..+.+++.+||..+.|++
T Consensus 102 ~~~~~~~~~~~vliiDe~~~l-~~---~~~~~L------~~~le~~~~~~~~--i~~~-~~~~~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 102 RTKPIGGASFKIIFLDEADAL-TQ---DAQQAL------RRTMEMFSSNVRF--ILSC-NYSSKIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp HSCCGGGCSCEEEEEETGGGS-CH---HHHHHH------HHHHHHTTTTEEE--EEEE-SCGGGSCHHHHHTEEEEECCC
T ss_pred hhCCcCCCCCeEEEEeCCCcC-CH---HHHHHH------HHHHHhcCCCCeE--EEEe-CCccccCHHHHhhCcEEEecC
Confidence 1 11 223455566655 22 111111 111111 22233 4444 667789999999999999999
Q ss_pred CCHHHHHHHHHHHhch
Q psy14616 148 YQDEEIQAILKIRLVK 163 (174)
Q Consensus 148 ~~~~e~~~il~~~l~~ 163 (174)
++.+++.++++..+..
T Consensus 169 l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAEN 184 (327)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999886543
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.59 E-value=6.6e-16 Score=108.95 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=81.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~ 70 (174)
++|+++..+.+ .+.+..+. +.+++|+||||||||++++++++.+.+ ...+..++...... ...+.
T Consensus 24 ~~g~~~~~~~l---~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1jbk_A 24 VIGRDEEIRRT---IQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE 98 (195)
T ss_dssp CCSCHHHHHHH---HHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHH
T ss_pred cccchHHHHHH---HHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCcccc
Confidence 57888777444 44444432 468999999999999999999998732 23344444433321 11111
Q ss_pred hh----hh---h-hhccC-cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC-----CCCHHh
Q psy14616 71 TE----EE---T-EMIEG-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH-----GIPIDL 136 (174)
Q Consensus 71 ~~----~~---~-~~~~~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~l 136 (174)
.. .. . ....+ .++++++|.+....... ....+ ...+....+..+..+ ++++ +.+. .+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~-~~~~~-~~~l~~~~~~~~~~~--i~~~-~~~~~~~~~~~~~~l 173 (195)
T 1jbk_A 99 FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDA-GNMLKPALARGELHC--VGAT-TLDEYRQYIEKDAAL 173 (195)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCC-HHHHHHHHHTTSCCE--EEEE-CHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc-chHHH-HHHHHHhhccCCeEE--EEeC-CHHHHHHHHhcCHHH
Confidence 11 00 0 11112 46667777763221000 00000 011112222233334 5555 3332 689999
Q ss_pred hcceeeEecCCCCHHHHHHHH
Q psy14616 137 LDRMVIIPTQPYQDEEIQAIL 157 (174)
Q Consensus 137 ~sR~~~i~~~~~~~~e~~~il 157 (174)
++||..+.+++|+.++..+++
T Consensus 174 ~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 174 ERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhceeecCCCCHHHHHHHh
Confidence 999988999999999988765
No 44
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.58 E-value=8.5e-15 Score=113.87 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=86.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch--------------h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------L 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------~ 66 (174)
++|++++++ .+...++.++.+ +.++|+||||||||++|+++|+.+++........++.+.. .
T Consensus 18 ~vg~~~~~~---~L~~~l~~~~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 18 VVGQEHVLT---ALANGLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp SCSCHHHHH---HHHHHHHHTCCC-SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred ccCcHHHHH---HHHHHHHhCCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 689999985 444555667654 6789999999999999999999997653221111111100 0
Q ss_pred ---------hhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhc-c-ccccchhhhcccCCCC
Q psy14616 67 ---------EMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-L-GAKMIEAIGTAYSSPH 130 (174)
Q Consensus 67 ---------~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~ 130 (174)
.+....+..... +..++++++|.+ +. ...+. +....+ . .+..+ +.++ +...
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-~~---~~~~~------Ll~~le~~~~~~~~--Il~~-~~~~ 160 (373)
T 1jr3_A 94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-SR---HSFNA------LLKTLEEPPEHVKF--LLAT-TDPQ 160 (373)
T ss_dssp ETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-CH---HHHHH------HHHHHHSCCSSEEE--EEEE-SCGG
T ss_pred cccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-cH---HHHHH------HHHHHhcCCCceEE--EEEe-CChH
Confidence 000111111111 113444455544 21 11111 111111 1 22333 4444 4667
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.+.+++.+||..+.+.+++.+++.++++..+.+
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999987644
No 45
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.58 E-value=1e-17 Score=142.31 Aligned_cols=159 Identities=24% Similarity=0.335 Sum_probs=103.1
Q ss_pred CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
++|++++++.+..+..+- ..+..++.+++|+||||||||++|+++|..++. .++.++++.+.+.+++...
T Consensus 479 i~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~~~~g~~~ 556 (806)
T 1ypw_A 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPELLTMWFGESE 556 (806)
T ss_dssp SSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCCSSSTTCCTTTSS
T ss_pred cccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEechHhhhhhcCccH
Confidence 468888886655443211 113345678999999999999999999999984 4677777777766665543
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCCcc----c-eeEEEe---ccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGSKV----G-KLTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~----~-~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l 136 (174)
+.+ ...++.++++|+|.+....+... . ...+.. ..++......+.++ |+|| |++..+++++
T Consensus 557 ~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~v--I~tT-N~~~~ld~al 633 (806)
T 1ypw_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI--IGAT-NRPDIIDPAI 633 (806)
T ss_dssp HHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBC--CCCC-BSCGGGSCTT
T ss_pred HHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEE--EEec-CCcccCCHHH
Confidence 222 22356788889988744331110 0 000000 11122222233444 5565 8999999999
Q ss_pred hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616 137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN 164 (174)
Q Consensus 137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~ 164 (174)
++ || ..++++.|+.++..+|++.++.+.
T Consensus 634 lrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp SSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred hCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 98 99 689999999999999999887543
No 46
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.58 E-value=3.2e-15 Score=110.97 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=94.8
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhh--
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKT-- 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-- 71 (174)
++|+++++..+..+...... +...+++++|+||||||||++++++|..++ ..++.+++..+.....+..
T Consensus 18 i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~ 95 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA 95 (254)
T ss_dssp CCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHH
Confidence 57999999888877765542 122346799999999999999999999987 4466666554433222221
Q ss_pred -----hhhhh-hccCcEEEEEEeccCCCCCCc----cce-eEEEeccchhhhc--cccccchhhhcccCCCCCCCHHhhc
Q psy14616 72 -----EEETE-MIEGEVVEIQIERPATGLGSK----VGK-LTMKTTEMETSYD--LGAKMIEAIGTAYSSPHGIPIDLLD 138 (174)
Q Consensus 72 -----~~~~~-~~~~~i~~~~id~~~~~~~~~----~~~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~l~~~l~s 138 (174)
.+.+. ..+..++++++|.+....... ... .......+..... ....++ .++++ |++..+++++++
T Consensus 96 ~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i-~~a~t-~~p~~ld~~l~r 173 (254)
T 1ixz_A 96 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV-VMAAT-NRPDILDPALLR 173 (254)
T ss_dssp HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEE-EEEEE-SCGGGSCGGGGS
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEE-EEEcc-CCchhCCHHHcC
Confidence 12221 234556667777652221000 000 0000000011110 111222 14444 788889999998
Q ss_pred --ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 --RM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 --R~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
|| ..++++.|+.++..+|++.+..
T Consensus 174 ~~rf~~~i~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 174 PGRFDRQIAIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred CCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence 77 7899999999999999987653
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.58 E-value=1.4e-14 Score=116.54 Aligned_cols=140 Identities=21% Similarity=0.198 Sum_probs=79.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|||++..++.+. ..+... ...++||+||||||||++|+++|+.+.+ ...++.++++ ..+.+..+
T Consensus 182 iiGr~~~i~~l~---~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e 253 (468)
T 3pxg_A 182 VIGRSKEIQRVI---EVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFE 253 (468)
T ss_dssp CCCCHHHHHHHH---HHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------C
T ss_pred ccCcHHHHHHHH---HHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHH
Confidence 689998885544 444443 3469999999999999999999999732 2334555544 11222211
Q ss_pred -------hhhhhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhccee
Q psy14616 73 -------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLDRMV 141 (174)
Q Consensus 73 -------~~~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~sR~~ 141 (174)
+......+.+++ +| . .. +.++.... ....+...+ |++++... ..+++++++||+
T Consensus 254 ~~~~~~~~~~~~~~~~iLf--iD-~-~~---~a~~~L~~------~L~~g~v~v--I~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 254 DRLKKVMDEIRQAGNIILF--ID-A-AI---DASNILKP------SLARGELQC--IGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp TTHHHHHHHHHTCCCCEEE--EC-C------------CC------CTTSSSCEE--EEECCTTTTHHHHTTCSHHHHSEE
T ss_pred HHHHHHHHHHHhcCCeEEE--Ee-C-ch---hHHHHHHH------hhcCCCEEE--EecCCHHHHHHHhhcCHHHHHhCc
Confidence 111112233333 44 1 11 11121111 111222333 66663333 268999999999
Q ss_pred eEecCCCCHHHHHHHHHHHhch
Q psy14616 142 IIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 142 ~i~~~~~~~~e~~~il~~~l~~ 163 (174)
++.+++|+.++..+|++..+.+
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTTT
T ss_pred cceeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999986544
No 48
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1e-14 Score=118.54 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=90.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcC------------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGK------------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~------------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 68 (174)
++|++.+++.+..+........ .+.+++||+||||||||++|+++|+.++ ..++.++++.....+.
T Consensus 41 liG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 41 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YDILEQNASDVRSKTL 118 (516)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CEEEEECTTSCCCHHH
T ss_pred hcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CCEEEEeCCCcchHHH
Confidence 6899999977776665433211 1347999999999999999999999997 4577777766544322
Q ss_pred hhhh-h-------hhh------------hccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCC
Q psy14616 69 NKTE-E-------ETE------------MIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSS 128 (174)
Q Consensus 69 ~~~~-~-------~~~------------~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 128 (174)
.... . ... ..+..++++|+|.+.... .+.+ ..+.......+..+ ++++++.
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---~~~l----~~L~~~l~~~~~~i--Ili~~~~ 189 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---RGGV----GQLAQFCRKTSTPL--ILICNER 189 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---TTHH----HHHHHHHHHCSSCE--EEEESCT
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---HHHH----HHHHHHHHhcCCCE--EEEEcCC
Confidence 1110 0 001 112234556776663321 1100 01111112222223 2233222
Q ss_pred CCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.....+++.+||..+.|++++.+++.++++....+
T Consensus 190 ~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 190 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 22344678999999999999999999999886543
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.58 E-value=3.7e-15 Score=114.61 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=84.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc-cchhh-hhhhh-----h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE-IYSLE-MNKTE-----E 73 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~-~~~~~-~~~~~-----~ 73 (174)
++||+++++.+.... .. +.+++|+||||||||++|+++|+.++.. +..+++.. ....+ .+... .
T Consensus 29 i~g~~~~~~~l~~~l---~~----~~~vll~G~pGtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~l~g~~~~~~~~~ 99 (331)
T 2r44_A 29 VVGQKYMINRLLIGI---CT----GGHILLEGVPGLAKTLSVNTLAKTMDLD--FHRIQFTPDLLPSDLIGTMIYNQHKG 99 (331)
T ss_dssp CCSCHHHHHHHHHHH---HH----TCCEEEESCCCHHHHHHHHHHHHHTTCC--EEEEECCTTCCHHHHHEEEEEETTTT
T ss_pred eeCcHHHHHHHHHHH---Hc----CCeEEEECCCCCcHHHHHHHHHHHhCCC--eEEEecCCCCChhhcCCceeecCCCC
Confidence 689999986655433 33 3599999999999999999999999854 44444321 10000 00000 0
Q ss_pred h-----hhhccCcEEEEEEeccCCCCCC------ccceeEEEeccchhhhccccccchhhhcccCCCC-----CCCHHhh
Q psy14616 74 E-----TEMIEGEVVEIQIERPATGLGS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH-----GIPIDLL 137 (174)
Q Consensus 74 ~-----~~~~~~~i~~~~id~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~l~ 137 (174)
. ..+..+.++++|+|++...... +.+.... .......+...+ .++|+ |+.. .++++++
T Consensus 100 ~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~----~g~~~~~~~~~~-viat~-np~~~~~~~~l~~~l~ 173 (331)
T 2r44_A 100 NFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTI----GDTTYPLDNPFL-VLATQ-NPVEQEGTYPLPEAQV 173 (331)
T ss_dssp EEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE----TTEEEECCSSCE-EEEEE-CTTCCSCCCCCCHHHH
T ss_pred ceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceee----CCEEEECCCCEE-EEEec-CCCcccCcccCCHHHH
Confidence 0 0111245666677765211100 0011111 011112222222 24444 5432 3899999
Q ss_pred ccee-eEecCCCCHHHHHHHHHHHhch
Q psy14616 138 DRMV-IIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 138 sR~~-~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+||. .+.+++|+.++..+|++.....
T Consensus 174 ~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 174 DRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred hheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 9995 6999999999999999987654
No 50
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.57 E-value=5.9e-15 Score=106.32 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=85.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhhh-hh-hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLEM-NK-TEEET 75 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~-~~-~~~~~ 75 (174)
++|++.+++.+ ...++.+..+ +++|+||||||||++++.+++.+.. ...+..+++........ .. .....
T Consensus 19 ~~g~~~~~~~l---~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 19 VVGQDEVIQRL---KGYVERKNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp CCSCHHHHHHH---HHHHHTTCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HcCcHHHHHHH---HHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 57888888554 4445555433 6999999999999999999998732 23355555443322111 00 00111
Q ss_pred h------hccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616 76 E------MIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP 147 (174)
Q Consensus 76 ~------~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~ 147 (174)
. ..+..++++++|.+... .... +....+. .+..+ ++++ +.+..+++++.+||..+.+++
T Consensus 94 ~~~~~~~~~~~vliiDe~~~l~~~----~~~~------l~~~l~~~~~~~~~--i~~~-~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 94 RTAPIGGAPFKIIFLDEADALTAD----AQAA------LRRTMEMYSKSCRF--ILSC-NYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp TSCCSTTCSCEEEEEETGGGSCHH----HHHH------HHHHHHHTTTTEEE--EEEE-SCGGGSCHHHHTTSEEEECCC
T ss_pred cccCCCccCceEEEEeChhhcCHH----HHHH------HHHHHHhcCCCCeE--EEEe-CChhhcCHHHHHhCceeecCC
Confidence 1 11223455555554211 1110 1111111 22233 4455 667789999999999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy14616 148 YQDEEIQAILKIRLV 162 (174)
Q Consensus 148 ~~~~e~~~il~~~l~ 162 (174)
++.+++.++++..+.
T Consensus 161 ~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 161 VPKEAMKKRLLEICE 175 (226)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 51
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.57 E-value=3.6e-15 Score=113.53 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=88.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhh-hhhh-hhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLE-MNKT-EEET 75 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~-~~~~-~~~~ 75 (174)
++|++++++. +...++.+..+ +++|+||||||||++|+++++.+.+. ..+..+++.+..+.+ +... ....
T Consensus 19 ~~g~~~~~~~---l~~~l~~~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (319)
T 2chq_A 19 VVGQDEVIQR---LKGYVERKNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (319)
T ss_dssp SCSCHHHHHH---HHTTTTTTCCC--CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHH
T ss_pred HhCCHHHHHH---HHHHHhCCCCC--eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHH
Confidence 5899998854 44455666554 59999999999999999999987332 234555554332211 1110 0111
Q ss_pred ---hhc---cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616 76 ---EMI---EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP 147 (174)
Q Consensus 76 ---~~~---~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~ 147 (174)
... ...++++++|.+ +. ..++. +....+. .+..+ +.++ |.+..+.+++.+||.++.|.+
T Consensus 94 ~~~~~~~~~~~vliiDe~~~l-~~---~~~~~------L~~~le~~~~~~~~--i~~~-~~~~~l~~~l~sr~~~i~~~~ 160 (319)
T 2chq_A 94 RTAPIGGAPFKIIFLDEADAL-TA---DAQAA------LRRTMEMYSKSCRF--ILSC-NYVSRIIEPIQSRCAVFRFKP 160 (319)
T ss_dssp HSCCSSSCCCEEEEEETGGGS-CH---HHHHT------TGGGTSSSSSSEEE--EEEE-SCGGGSCHHHHTTCEEEECCC
T ss_pred hcCCCCCCCceEEEEeCCCcC-CH---HHHHH------HHHHHHhcCCCCeE--EEEe-CChhhcchHHHhhCeEEEecC
Confidence 011 123455566655 21 11111 1111111 22333 4454 677789999999999999999
Q ss_pred CCHHHHHHHHHHHhch
Q psy14616 148 YQDEEIQAILKIRLVK 163 (174)
Q Consensus 148 ~~~~e~~~il~~~l~~ 163 (174)
++.+++.++++..+.+
T Consensus 161 ~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 161 VPKEAMKKRLLEICEK 176 (319)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987643
No 52
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=4.1e-15 Score=113.38 Aligned_cols=144 Identities=17% Similarity=0.225 Sum_probs=88.0
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchh-hhhhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSL-EMNKTEEETE 76 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~-~~~~~~~~~~ 76 (174)
++|++++++ .+...+++++.+ +++|+||||+|||++|+++++.+.+. ..+..+++.+..+. .+........
T Consensus 23 ~~g~~~~~~---~l~~~l~~~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (323)
T 1sxj_B 23 IVGNKETID---RLQQIAKDGNMP--HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFA 97 (323)
T ss_dssp CCSCTHHHH---HHHHHHHSCCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHCCHHHHH---HHHHHHHcCCCC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHH
Confidence 589999885 455556777655 49999999999999999999987432 23445554432211 1111111100
Q ss_pred ----hc-cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecC
Q psy14616 77 ----MI-EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQ 146 (174)
Q Consensus 77 ----~~-~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~ 146 (174)
.+ .+ .++++++|.+ +. ..++. +....+. .+..+ +.++ +.+..+++++.+||.++.|.
T Consensus 98 ~~~~~~~~~~~~viiiDe~~~l-~~---~~~~~------L~~~le~~~~~~~~--il~~-~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 98 QKKLHLPPGKHKIVILDEADSM-TA---GAQQA------LRRTMELYSNSTRF--AFAC-NQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp HBCCCCCTTCCEEEEEESGGGS-CH---HHHHT------THHHHHHTTTTEEE--EEEE-SCGGGSCHHHHTTSEEEECC
T ss_pred hccccCCCCCceEEEEECcccC-CH---HHHHH------HHHHHhccCCCceE--EEEe-CChhhchhHHHhhceEEeec
Confidence 11 22 3444565555 21 11111 1111111 22333 4444 66788999999999999999
Q ss_pred CCCHHHHHHHHHHHhc
Q psy14616 147 PYQDEEIQAILKIRLV 162 (174)
Q Consensus 147 ~~~~~e~~~il~~~l~ 162 (174)
+++.+++.++++..+.
T Consensus 165 ~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIK 180 (323)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998664
No 53
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.56 E-value=9.1e-15 Score=109.98 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=95.1
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhh--
Q psy14616 1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKT-- 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-- 71 (174)
|+|+++++..+..+...... +...+++++|+||||||||+++++++..++ ..++.+++..+.....+..
T Consensus 42 i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~ 119 (278)
T 1iy2_A 42 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA 119 (278)
T ss_dssp SSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHH
T ss_pred hCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHH
Confidence 68999999888877765542 122346799999999999999999999987 4466666554433222211
Q ss_pred -----hhhhh-hccCcEEEEEEeccCCCCCCc----cce-eEEEeccchhhhc--cccccchhhhcccCCCCCCCHHhhc
Q psy14616 72 -----EEETE-MIEGEVVEIQIERPATGLGSK----VGK-LTMKTTEMETSYD--LGAKMIEAIGTAYSSPHGIPIDLLD 138 (174)
Q Consensus 72 -----~~~~~-~~~~~i~~~~id~~~~~~~~~----~~~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~l~~~l~s 138 (174)
.+.+. ..+..++++++|.+....... ... .......+..... ....++ .++++ |++..+++++++
T Consensus 120 ~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i-~~a~t-~~p~~ld~~l~r 197 (278)
T 1iy2_A 120 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV-VMAAT-NRPDILDPALLR 197 (278)
T ss_dssp HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEE-EEEEE-SCTTSSCHHHHS
T ss_pred HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEE-EEEec-CCchhCCHhHcC
Confidence 12222 334556667777652221000 000 0000000001000 011122 14444 788889999997
Q ss_pred --ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 --RM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 --R~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
|| ..++++.|+.++..+|++.++.
T Consensus 198 ~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 198 PGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp TTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 77 7899999999999999987664
No 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=7.6e-15 Score=113.38 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=86.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC---Ceeeecccccchhh-hhhh-hhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT---PFTSMAGSEIYSLE-MNKT-EEET 75 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~-~~~~-~~~~ 75 (174)
++||++++ ..+...++.|+.+ +++|+||||+|||++++++|+.+.+.. .+..++..+..+.+ +... ....
T Consensus 27 ~~g~~~~~---~~L~~~i~~g~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 27 VYGQNEVI---TTVRKFVDEGKLP--HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp CCSCHHHH---HHHHHHHHTTCCC--CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred hcCcHHHH---HHHHHHHhcCCCc--eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 57999888 4555666888766 599999999999999999999985432 23344443321110 0000 0111
Q ss_pred ---hhccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616 76 ---EMIEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP 147 (174)
Q Consensus 76 ---~~~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~ 147 (174)
..+.+ .++++++|.+ +. ..++.. ....+. .+..+ +.++ |.+..+.++++|||+++.|.+
T Consensus 102 ~~~~~~~~~~~viiiDe~~~l-~~---~~~~~L------~~~le~~~~~~~~--il~~-n~~~~i~~~i~sR~~~~~~~~ 168 (340)
T 1sxj_C 102 STRQIFSKGFKLIILDEADAM-TN---AAQNAL------RRVIERYTKNTRF--CVLA-NYAHKLTPALLSQCTRFRFQP 168 (340)
T ss_dssp HBCCSSSCSCEEEEETTGGGS-CH---HHHHHH------HHHHHHTTTTEEE--EEEE-SCGGGSCHHHHTTSEEEECCC
T ss_pred hhcccCCCCceEEEEeCCCCC-CH---HHHHHH------HHHHhcCCCCeEE--EEEe-cCccccchhHHhhceeEeccC
Confidence 11111 2233345444 22 111111 111111 12223 3344 677889999999999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy14616 148 YQDEEIQAILKIRLV 162 (174)
Q Consensus 148 ~~~~e~~~il~~~l~ 162 (174)
++.+++.+++...+.
T Consensus 169 l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 169 LPQEAIERRIANVLV 183 (340)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988663
No 55
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=1.9e-15 Score=115.31 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-C---CCCeeeecccc-cch-hhhhhhhhhhh
Q psy14616 3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-P---DTPFTSMAGSE-IYS-LEMNKTEEETE 76 (174)
Q Consensus 3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~---~~~~~~~~~~~-~~~-~~~~~~~~~~~ 76 (174)
||+++. ..+...+++++ .+++||+||||+|||++|+++|+..+ + ...+..++..+ ..+ .++....+.+.
T Consensus 1 g~~~~~---~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~ 75 (305)
T 2gno_A 1 GAKDQL---ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLN 75 (305)
T ss_dssp ---CHH---HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHT
T ss_pred ChHHHH---HHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHh
Confidence 788888 56666778888 36999999999999999999998642 1 12345555432 122 12333333333
Q ss_pred hcc--C--c-EEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhhcceeeEecCCCC
Q psy14616 77 MIE--G--E-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQ 149 (174)
Q Consensus 77 ~~~--~--~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~ 149 (174)
..| + + +++++.|.+ +. ..++.. ....+.+ ++.| |.++ +.+..+.++++|| +++|.+++
T Consensus 76 ~~p~~~~~kvviIdead~l-t~---~a~naL------Lk~LEep~~~t~f--Il~t-~~~~kl~~tI~SR--~~~f~~l~ 140 (305)
T 2gno_A 76 YSPELYTRKYVIVHDCERM-TQ---QAANAF------LKALEEPPEYAVI--VLNT-RRWHYLLPTIKSR--VFRVVVNV 140 (305)
T ss_dssp SCCSSSSSEEEEETTGGGB-CH---HHHHHT------HHHHHSCCTTEEE--EEEE-SCGGGSCHHHHTT--SEEEECCC
T ss_pred hccccCCceEEEeccHHHh-CH---HHHHHH------HHHHhCCCCCeEE--EEEE-CChHhChHHHHce--eEeCCCCC
Confidence 332 2 3 344466665 32 222221 1222222 3344 3344 4667899999999 99999999
Q ss_pred HHHHHHHHHHHh
Q psy14616 150 DEEIQAILKIRL 161 (174)
Q Consensus 150 ~~e~~~il~~~l 161 (174)
++++.++++...
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 56
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.8e-15 Score=114.63 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=83.9
Q ss_pred chHHHHHHHH-HHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccchhh------
Q psy14616 3 GQLQARRAAG-VVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYSLE------ 67 (174)
Q Consensus 3 G~~~~~~~l~-~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~~~------ 67 (174)
|.|+-...+. .+...+..+. +.+++++||||||||++++.+++.+.. .+.++.+++..+.+..
T Consensus 24 ~Re~E~~~i~~~L~~~i~~~~--~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 24 SQVEDFTRIFLPIYDSLMSSQ--NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 3344444444 4444555554 369999999999999999999999832 2345667764432210
Q ss_pred ---h-h------h----hh---hh---hhhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC
Q psy14616 68 ---M-N------K----TE---EE---TEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS 127 (174)
Q Consensus 68 ---~-~------~----~~---~~---~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 127 (174)
+ + . +. +. ....+..++++|+|.+. . +.+.+... .......++..+.+++.+.+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----q~~L~~l~-~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----EKILQYFE-KWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----THHHHHHH-HHHHCSSCCEEEEEECCSSC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----chHHHHHH-hcccccCCcEEEEEEecCcc
Confidence 0 0 0 00 00 00112245556777663 1 11111000 00111223444422233322
Q ss_pred CCC-CCCHHhhcce--eeEecCCCCHHHHHHHHHHHhch
Q psy14616 128 SPH-GIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 128 ~~~-~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.+. .+++.++||| .+|.|++|+.+|+.+|+++++..
T Consensus 175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 222 3567788998 68999999999999999999865
No 57
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.53 E-value=3.4e-15 Score=111.89 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=85.3
Q ss_pred CCchHHHHHHHHH----HHHHHHhc-CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc-hhhh------
Q psy14616 1 MVGQLQARRAAGV----VLGMIKEG-KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY-SLEM------ 68 (174)
Q Consensus 1 iiG~~~~~~~l~~----~~~~~~~g-~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~------ 68 (174)
++|++...+.+.. +...++.. ..+++++||+||||||||++|+++|+.++. +++.+++.+.+ +...
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~--~~~~i~~~~~~~g~~~~~~~~~ 112 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF--PFIKICSPDKMIGFSETAKCQA 112 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC--SEEEEECGGGCTTCCHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC--CEEEEeCHHHhcCCchHHHHHH
Confidence 4676655444333 55555532 344579999999999999999999999884 46666554321 1100
Q ss_pred -hhhhhhhh-hccCcEEEEEEeccCCCCC--CccceeEEEeccchhhhc----cccccchhhhcccCCCCCCCH-Hhhcc
Q psy14616 69 -NKTEEETE-MIEGEVVEIQIERPATGLG--SKVGKLTMKTTEMETSYD----LGAKMIEAIGTAYSSPHGIPI-DLLDR 139 (174)
Q Consensus 69 -~~~~~~~~-~~~~~i~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~l~~-~l~sR 139 (174)
....+.+. ..++.++++|+|.+..... ...+...+ ..+....+ ....++ .++++ |.+..+++ .+.+|
T Consensus 113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l--~~L~~~~~~~~~~~~~~~-ii~tt-n~~~~l~~~~l~~r 188 (272)
T 1d2n_A 113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVL--QALLVLLKKAPPQGRKLL-IIGTT-SRKDVLQEMEMLNA 188 (272)
T ss_dssp HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHH--HHHHHHTTCCCSTTCEEE-EEEEE-SCHHHHHHTTCTTT
T ss_pred HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHH--HHHHHHhcCccCCCCCEE-EEEec-CChhhcchhhhhcc
Confidence 00001111 1234566678877633211 01111000 00111111 112222 15555 67666666 68899
Q ss_pred e-eeEecCCCCH-HHHHHHHHH
Q psy14616 140 M-VIIPTQPYQD-EEIQAILKI 159 (174)
Q Consensus 140 ~-~~i~~~~~~~-~e~~~il~~ 159 (174)
| ..++++++++ +++.+++..
T Consensus 189 f~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 189 FSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp SSEEEECCCEEEHHHHHHHHHH
T ss_pred cceEEcCCCccHHHHHHHHHHh
Confidence 7 8899999987 888888766
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.53 E-value=4.4e-14 Score=102.86 Aligned_cols=146 Identities=20% Similarity=0.231 Sum_probs=82.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc--------------chh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI--------------YSL 66 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~--------------~~~ 66 (174)
++|++.+++.+ ...+..+..+ +.++|+||||+|||++++.+++.+++........+..+ ...
T Consensus 25 ~~g~~~~~~~l---~~~l~~~~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 25 VVGQEHVLTAL---ANGLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp CCSCHHHHHHH---HHHHHHTCCC-SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred HhCcHHHHHHH---HHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 57888888544 4445566544 68999999999999999999998854322111110000 000
Q ss_pred h------hhhhhhhhhh--------ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616 67 E------MNKTEEETEM--------IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH 130 (174)
Q Consensus 67 ~------~~~~~~~~~~--------~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 130 (174)
. ........+. .+..++++++|.+ +. ..... +....+. .+..+ +.++ +...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-~~---~~~~~------l~~~l~~~~~~~~~--i~~t-~~~~ 167 (250)
T 1njg_A 101 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-SR---HSFNA------LLKTLEEPPEHVKF--LLAT-TDPQ 167 (250)
T ss_dssp ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-CH---HHHHH------HHHHHHSCCTTEEE--EEEE-SCGG
T ss_pred cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccc-cH---HHHHH------HHHHHhcCCCceEE--EEEe-CChH
Confidence 0 0000000000 0123344455443 11 11110 1111111 12223 4455 5667
Q ss_pred CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
.+++++.+|+..+++++++.+++.++++..+.+
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999999999987643
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=5.6e-15 Score=114.13 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC----CCCeeeecccccchh-hhhhhh-hh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP----DTPFTSMAGSEIYSL-EMNKTE-EE 74 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~----~~~~~~~~~~~~~~~-~~~~~~-~~ 74 (174)
++|+++++ ..+...++.+..+ +++|+||||||||++|+++|+.+++ ...+..+++++.... .+.... ..
T Consensus 39 i~g~~~~~---~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 39 VTAQDHAV---TVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp CCSCCTTH---HHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred hhCCHHHH---HHHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHH
Confidence 58999888 4455555666544 5999999999999999999998742 234555665442211 111100 10
Q ss_pred hh------------hcc-C---cEEEEEEeccCCCCCCccceeEEEeccchhhhc-c-ccccchhhhcccCCCCCCCHHh
Q psy14616 75 TE------------MIE-G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-L-GAKMIEAIGTAYSSPHGIPIDL 136 (174)
Q Consensus 75 ~~------------~~~-~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~l~~~l 136 (174)
.. ..+ + .++++|+|.+ +. ..++. +....+ . .+..+ +.++ |.+..+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-~~---~~~~~------Ll~~le~~~~~~~~--il~~-~~~~~l~~~l 180 (353)
T 1sxj_D 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSM-TA---DAQSA------LRRTMETYSGVTRF--CLIC-NYVTRIIDPL 180 (353)
T ss_dssp HHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-CH---HHHHH------HHHHHHHTTTTEEE--EEEE-SCGGGSCHHH
T ss_pred hhhcccccchhhcccCCCCCceEEEEECCCcc-CH---HHHHH------HHHHHHhcCCCceE--EEEe-CchhhCcchh
Confidence 11 111 1 2333455544 21 11111 111111 1 12223 3344 6777899999
Q ss_pred hcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 137 LDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 137 ~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
++||..+.+.+++.+++.++++..+.+
T Consensus 181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hccCceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999987643
No 60
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=2.6e-14 Score=110.56 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=35.0
Q ss_pred hhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616 122 IGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 122 i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
+.++ +.+..+.++++|||.+++|.+++.+++.++++....+
T Consensus 168 Il~t-~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 168 IMVC-DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp EEEE-SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEe-CCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH
Confidence 4444 5677899999999999999999999999999987644
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=3.2e-14 Score=111.04 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=90.0
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC---------CCCeeeecccccc-hhh---
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP---------DTPFTSMAGSEIY-SLE--- 67 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~---------~~~~~~~~~~~~~-~~~--- 67 (174)
++|+++..+.+..+......+.. +++++|+||||||||++|+.+++.+.. ...++.+++.... ...
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~-~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 100 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEV-KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCC-CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCC-CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH
Confidence 58999888877766655544543 369999999999999999999998711 2456666654322 000
Q ss_pred ---hhhh------------hh---h-hh-hc-cC-cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhc
Q psy14616 68 ---MNKT------------EE---E-TE-MI-EG-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGT 124 (174)
Q Consensus 68 ---~~~~------------~~---~-~~-~~-~~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 124 (174)
.... .+ . .+ .. .+ .++++|+|.+.... .+.. .+...... .+..+ |++
T Consensus 101 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~---~~~~-----~l~~l~~~~~~~~i--I~~ 170 (384)
T 2qby_B 101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRR---GGDI-----VLYQLLRSDANISV--IMI 170 (384)
T ss_dssp HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHST---TSHH-----HHHHHHTSSSCEEE--EEE
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCC---CCce-----eHHHHhcCCcceEE--EEE
Confidence 0000 00 0 00 11 12 34455555552210 0111 01111111 33344 555
Q ss_pred ccCCC--CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 125 AYSSP--HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 125 ~~~~~--~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
++..+ ..+++++.+|+ ..+.|++|+.+++.++++.++.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 53332 67899999997 8999999999999999999764
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=1.6e-13 Score=116.12 Aligned_cols=140 Identities=21% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~~~~~~~~ 72 (174)
+||+++.++.+.. .+... ...++||+||||||||++|+++|+.+.+ ...+..++.+ ..+.+..+
T Consensus 182 iiG~~~~i~~l~~---~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g---~~~~G~~e 253 (758)
T 3pxi_A 182 VIGRSKEIQRVIE---VLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFE 253 (758)
T ss_dssp CCCCHHHHHHHHH---HHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------C
T ss_pred ccCchHHHHHHHH---HHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc---ccccchHH
Confidence 6899998855544 34443 3469999999999999999999999722 1233333331 11122211
Q ss_pred -------hhhhhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC----CCCHHhhccee
Q psy14616 73 -------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH----GIPIDLLDRMV 141 (174)
Q Consensus 73 -------~~~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~l~sR~~ 141 (174)
+.+....+.+++ || . .. +.++.... ........+ |++++.... .+++++++||+
T Consensus 254 ~~l~~~~~~~~~~~~~iLf--iD-~-~~---~~~~~L~~------~l~~~~v~~--I~at~~~~~~~~~~~d~al~rRf~ 318 (758)
T 3pxi_A 254 DRLKKVMDEIRQAGNIILF--ID-A-AI---DASNILKP------SLARGELQC--IGATTLDEYRKYIEKDAALERRFQ 318 (758)
T ss_dssp TTHHHHHHHHHTCCCCEEE--EC-C------------CC------CTTSSSCEE--EEECCTTTTHHHHTTCSHHHHSEE
T ss_pred HHHHHHHHHHHhcCCEEEE--Ec-C-ch---hHHHHHHH------HHhcCCEEE--EeCCChHHHHHHhhccHHHHhhCc
Confidence 112222233333 44 1 11 11111111 111222333 666633332 68999999999
Q ss_pred eEecCCCCHHHHHHHHHHHhch
Q psy14616 142 IIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 142 ~i~~~~~~~~e~~~il~~~l~~ 163 (174)
++.++.|+.++..+|++.....
T Consensus 319 ~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTTTT
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999975543
No 63
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.50 E-value=5.8e-14 Score=107.67 Aligned_cols=144 Identities=14% Similarity=0.149 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhhhh-----hh-h-ccCcEE
Q psy14616 12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTEEE-----TE-M-IEGEVV 83 (174)
Q Consensus 12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~-~-~~~~i~ 83 (174)
..+...++.....+.+++|+||||||||++++++++.+.. ..++..+++..+........... .. . .++.++
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~ 103 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLL 103 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEE
Confidence 4455555554334579999999999999999999998821 24566777665433222222110 01 1 145667
Q ss_pred EEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHHHH
Q psy14616 84 EIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQAIL 157 (174)
Q Consensus 84 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~il 157 (174)
++|+|.+.... ..+...+. .+....+....+ +.++++++. .+++++.+|| .++.+++ +.+++.+++
T Consensus 104 iDEi~~l~~~~--~~~~~l~~--~l~~~~~~~~~i---ii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 104 LDDVQFLSGKE--RTQIEFFH--IFNTLYLLEKQI---ILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp EECGGGGTTCH--HHHHHHHH--HHHHHHHTTCEE---EEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred EcCcccccCCh--HHHHHHHH--HHHHHHHCCCeE---EEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 77887762210 11111100 011111112222 344445554 6899999999 7899999 999999999
Q ss_pred HHHhch
Q psy14616 158 KIRLVK 163 (174)
Q Consensus 158 ~~~l~~ 163 (174)
+..+..
T Consensus 176 ~~~~~~ 181 (324)
T 1l8q_A 176 KEKLKE 181 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 997743
No 64
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.48 E-value=3e-14 Score=121.11 Aligned_cols=157 Identities=23% Similarity=0.272 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHHHHH-HHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616 1 MVGQLQARRAAGVVLGM-IKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~-~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (174)
|+|++.+++.+..+... +.. +..++.+++|+||||||||++|+++|..++ .+++.+++..+.+...+...
T Consensus 206 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~~i~v~~~~l~~~~~g~~~ 283 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESE 283 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CEEEEEEHHHHSSSSTTHHH
T ss_pred hCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CcEEEEEchHhhhhhhhhHH
Confidence 57889888777766654 221 334568999999999999999999999987 45777887766654444433
Q ss_pred -------hhh-hhccCcEEEEEEeccCCCCCCcccee--EEEe---ccchhhhccccccchhhhcccCCCCCCCHHhhc-
Q psy14616 73 -------EET-EMIEGEVVEIQIERPATGLGSKVGKL--TMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD- 138 (174)
Q Consensus 73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s- 138 (174)
+.+ ...++.++++|+|.+....+...... .+.. ..+..........+ ++++ |++..+++++.+
T Consensus 284 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v--I~at-n~~~~ld~al~r~ 360 (806)
T 1ypw_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV--MAAT-NRPNSIDPALRRF 360 (806)
T ss_dssp HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE--EEEC-SCTTTSCTTTTST
T ss_pred HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE--eccc-CCchhcCHHHhcc
Confidence 122 22356777788887744321111100 0000 00111111122222 4444 888999999997
Q ss_pred -ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 -RM-VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 -R~-~~i~~~~~~~~e~~~il~~~l~ 162 (174)
|| ..+.+..|+.++..++++.+..
T Consensus 361 gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 361 GRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp TSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccccccccCCCCHHHHHHHHHHHHh
Confidence 99 7789999999999999987653
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=6.5e-14 Score=119.91 Aligned_cols=156 Identities=22% Similarity=0.277 Sum_probs=97.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhh-------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEM------- 68 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~------- 68 (174)
|+||+.+++.+.......+.|.. |..+++|+||||||||++|+++++.+.+ ..+++.++++.+.....
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~ 639 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA 639 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCC
Confidence 68999999888777766665432 2258999999999999999999999833 35677787765543211
Q ss_pred ----------hhhhhhhhhccC-cEEEEEEeccCCCCCCccceeEEE--e-----ccchhhhccccccchhhhcccCC--
Q psy14616 69 ----------NKTEEETEMIEG-EVVEIQIERPATGLGSKVGKLTMK--T-----TEMETSYDLGAKMIEAIGTAYSS-- 128 (174)
Q Consensus 69 ----------~~~~~~~~~~~~-~i~~~~id~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~i~~~~~~-- 128 (174)
+.........++ .++++|+|++ +. +.++..+. + .......+..+.++ |+|+ |.
T Consensus 640 ~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-~~---~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ii--I~ts-n~~~ 712 (854)
T 1qvr_A 640 PPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-HP---DVFNILLQILDDGRLTDSHGRTVDFRNTVI--ILTS-NLGS 712 (854)
T ss_dssp -----------CHHHHHHHCSSEEEEESSGGGS-CH---HHHHHHHHHHTTTEECCSSSCCEECTTEEE--EEEC-CTTH
T ss_pred CCCCcCccccchHHHHHHhCCCeEEEEeccccc-CH---HHHHHHHHHhccCceECCCCCEeccCCeEE--EEec-CcCh
Confidence 111111122233 4555677765 22 11111100 0 00112223444445 5666 43
Q ss_pred ------------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616 129 ------------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 129 ------------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~ 163 (174)
...+.|+|++|| .++.|.+++.+++..|++..+.+
T Consensus 713 ~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 713 PLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 235789999999 88899999999999999987753
No 66
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.47 E-value=3.8e-13 Score=103.71 Aligned_cols=152 Identities=22% Similarity=0.256 Sum_probs=85.7
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc-hhhhhhhhhhhhhc-
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY-SLEMNKTEEETEMI- 78 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 78 (174)
++||+.+++.+......-+....++.+++|+||||+||||+++++|..+++. +...++.... ..++.... ....
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~~~sg~~~~~~~~l~~~~--~~~~~ 102 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVLVKQGDMAAIL--TSLER 102 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTCCSHHHHHHHH--HHCCT
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEechHhcCHHHHHHHH--HHccC
Confidence 4799988877766554332222334789999999999999999999999864 3323222111 11111100 1111
Q ss_pred cCcEEEEEEeccCCCCCCccceeE-----------EEeccchhh--hccccccchhhhcccCCCCCCCHHhhcce-eeEe
Q psy14616 79 EGEVVEIQIERPATGLGSKVGKLT-----------MKTTEMETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIP 144 (174)
Q Consensus 79 ~~~i~~~~id~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~ 144 (174)
...++++++|.+.. . ....+. ......... ..+....+ +. +++.+..+++++++|| ..+.
T Consensus 103 ~~v~~iDE~~~l~~-~--~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l--i~-at~~~~~Ls~~l~sR~~l~~~ 176 (334)
T 1in4_A 103 GDVLFIDEIHRLNK-A--VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL--VG-ATTRSGLLSSPLRSRFGIILE 176 (334)
T ss_dssp TCEEEEETGGGCCH-H--HHHHHHHHHHTSCCCC---------------CCCEE--EE-EESCGGGSCHHHHTTCSEEEE
T ss_pred CCEEEEcchhhcCH-H--HHHHHHHHHHhcccceeeccCcccccccccCCCeEE--EE-ecCCcccCCHHHHHhcCceee
Confidence 23345556665521 1 000010 000000000 01112222 44 3467788999999999 5789
Q ss_pred cCCCCHHHHHHHHHHHhc
Q psy14616 145 TQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 145 ~~~~~~~e~~~il~~~l~ 162 (174)
+++++.+++.+++++...
T Consensus 177 Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 177 LDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998653
No 67
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.45 E-value=2.6e-13 Score=99.06 Aligned_cols=140 Identities=17% Similarity=0.086 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhh-ccCcEEEEEEec
Q psy14616 12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEM-IEGEVVEIQIER 89 (174)
Q Consensus 12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~id~ 89 (174)
..+......+ .+++++|+||||||||++|+++++.+... ..+..+++..+..... .. .... .++.++++++|.
T Consensus 41 ~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~vliiDe~~~ 115 (242)
T 3bos_A 41 GALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST-AL--LEGLEQFDLICIDDVDA 115 (242)
T ss_dssp HHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG-GG--GTTGGGSSEEEEETGGG
T ss_pred HHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH-HH--HHhccCCCEEEEecccc
Confidence 4444444544 34799999999999999999999987432 3345555544332110 00 0111 134566667766
Q ss_pred cCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHHHHHHHhc
Q psy14616 90 PATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~ 162 (174)
+.... ..+...+ ..+....+.....+ +.+++..+. .+.+++.+|| .++++++++.+++.++++..+.
T Consensus 116 ~~~~~--~~~~~l~--~~l~~~~~~~~~~i--i~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 116 VAGHP--LWEEAIF--DLYNRVAEQKRGSL--IVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp GTTCH--HHHHHHH--HHHHHHHHHCSCEE--EEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred ccCCH--HHHHHHH--HHHHHHHHcCCCeE--EEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 52210 0011100 01111111122212 344433433 4569999999 8999999999999999998764
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.45 E-value=8.2e-14 Score=119.27 Aligned_cols=153 Identities=19% Similarity=0.174 Sum_probs=81.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~ 70 (174)
+||+++.++.+ ...+..+. .++++|+||||||||++|+++|+.+.. ...++.++.+.+.. .+.+.
T Consensus 172 viGr~~~i~~l---~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~ 246 (854)
T 1qvr_A 172 VIGRDEEIRRV---IQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 246 (854)
T ss_dssp CCSCHHHHHHH---HHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------C
T ss_pred cCCcHHHHHHH---HHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchH
Confidence 58988777444 44444433 358999999999999999999998821 24456666555431 12222
Q ss_pred hh-------hhhhhc--cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhc
Q psy14616 71 TE-------EETEMI--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLD 138 (174)
Q Consensus 71 ~~-------~~~~~~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~s 138 (174)
.. ...... +..++++|+|.+.... ...+..... ..+..........+ |++++... ..+++++.+
T Consensus 247 ~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~-~~~g~~~~~-~~L~~~l~~~~i~~--I~at~~~~~~~~~~d~aL~r 322 (854)
T 1qvr_A 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAG-KAEGAVDAG-NMLKPALARGELRL--IGATTLDEYREIEKDPALER 322 (854)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHHTTCCCE--EEEECHHHHHHHTTCTTTCS
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccC-CccchHHHH-HHHHHHHhCCCeEE--EEecCchHHhhhccCHHHHh
Confidence 21 111111 1234556777663221 111111111 11122222233333 55553222 257899999
Q ss_pred ceeeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 RMVIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 R~~~i~~~~~~~~e~~~il~~~l~ 162 (174)
||+.+.+++|+.++..+|++..+.
T Consensus 323 Rf~~i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 323 RFQPVYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CCCCEEECCCCHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCHHHHHHHHHhhhh
Confidence 999899999999999999987654
No 69
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.44 E-value=6.5e-14 Score=98.36 Aligned_cols=140 Identities=19% Similarity=0.155 Sum_probs=73.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccchh--hhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYSL--EMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~~--~~~~ 70 (174)
++|++...+. +.+.+..+. ..+++|+||||||||++|+++++.+.. ...+..++...+... ..+.
T Consensus 24 ~~g~~~~~~~---l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (187)
T 2p65_A 24 VIGRDTEIRR---AIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGD 98 (187)
T ss_dssp CCSCHHHHHH---HHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHH
T ss_pred hhcchHHHHH---HHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhH
Confidence 5788877644 444444432 468999999999999999999998832 233444443332210 1111
Q ss_pred hh-------hhhhhc--cCcEEEEEEeccCCCCC-CccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHh
Q psy14616 71 TE-------EETEMI--EGEVVEIQIERPATGLG-SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDL 136 (174)
Q Consensus 71 ~~-------~~~~~~--~~~i~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l 136 (174)
.. ...... +..++++|+|.+..... ...+. .+. ..+....+.....+ +++++... ..+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~-~~l~~~~~~~~~~i--i~~~~~~~~~~~~~~~~~l 174 (187)
T 2p65_A 99 FEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGAL-DAG-NILKPMLARGELRC--IGATTVSEYRQFIEKDKAL 174 (187)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSC-CTH-HHHHHHHHTTCSCE--EEEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccch-HHH-HHHHHHHhcCCeeE--EEecCHHHHHHHHhccHHH
Confidence 11 111111 12455557776632211 01011 000 01111222233334 55553222 3689999
Q ss_pred hcceeeEecCCCC
Q psy14616 137 LDRMVIIPTQPYQ 149 (174)
Q Consensus 137 ~sR~~~i~~~~~~ 149 (174)
++||..+.+++|+
T Consensus 175 ~~R~~~i~i~~p~ 187 (187)
T 2p65_A 175 ERRFQQILVEQPS 187 (187)
T ss_dssp HHHEEEEECCSCC
T ss_pred HHhcCcccCCCCC
Confidence 9999889988774
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=1.1e-13 Score=107.88 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=85.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-------CCCCCeeeecccccchhh------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-------GPDTPFTSMAGSEIYSLE------ 67 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l-------~~~~~~~~~~~~~~~~~~------ 67 (174)
++|++...+.+..+......+. .+.+++|+||||||||++++.+++.+ +....++.+++....+..
T Consensus 21 ~~gr~~~~~~l~~~l~~~~~~~-~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 99 (387)
T 2v1u_A 21 LPHREAELRRLAEVLAPALRGE-KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI 99 (387)
T ss_dssp CTTCHHHHHHHHHTTGGGTSSC-CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHH
Confidence 5788888866555443221122 34799999999999999999999988 223556666654322110
Q ss_pred --------------hhhhhhh-hhh--ccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhc---cccccchhhhc
Q psy14616 68 --------------MNKTEEE-TEM--IEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYD---LGAKMIEAIGT 124 (174)
Q Consensus 68 --------------~~~~~~~-~~~--~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~ 124 (174)
.....+. ... ..+ .++++|+|.+.... ..+..... ....... ..+..+ |++
T Consensus 100 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--~~~~~l~~--l~~~~~~~~~~~~~~~--I~~ 173 (387)
T 2v1u_A 100 AEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--GGQDLLYR--ITRINQELGDRVWVSL--VGI 173 (387)
T ss_dssp HHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--THHHHHHH--HHHGGGCC-----CEE--EEE
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--CCChHHHh--HhhchhhcCCCceEEE--EEE
Confidence 0000000 001 123 33444555442210 01111000 0000111 122233 555
Q ss_pred ccCCC---CCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616 125 AYSSP---HGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 125 ~~~~~---~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~ 162 (174)
+ |.. ..+++.+.+|| ..+.|++|+.+++.++++..+.
T Consensus 174 t-~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 174 T-NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp C-SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred E-CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 5 333 67899999999 6899999999999999998774
No 71
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.43 E-value=2.2e-13 Score=108.73 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=88.2
Q ss_pred CchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC---CCCCeeeecccccchhhhhhhhhh----
Q psy14616 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG---PDTPFTSMAGSEIYSLEMNKTEEE---- 74 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~~~~~~---- 74 (174)
+|+.... +...+....+.... +++++|+||||+|||++|+++++.+. ....+..+++..+...........
T Consensus 109 ~g~~n~~-a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~ 186 (440)
T 2z4s_A 109 VGPGNSF-AYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE 186 (440)
T ss_dssp CCTTTHH-HHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHH
T ss_pred CCCchHH-HHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHH
Confidence 3644332 33445555555332 57999999999999999999999882 124466666655433222221110
Q ss_pred -hhh---ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhcce---eeEe
Q psy14616 75 -TEM---IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRM---VIIP 144 (174)
Q Consensus 75 -~~~---~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~---~~i~ 144 (174)
... .++.++++|+|.+.... ..+...+. .+....+....+ +.++.+.+.. +++++++|| .++.
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~--~~q~~l~~--~l~~l~~~~~~i---Iitt~~~~~~l~~l~~~L~sR~~~g~~i~ 259 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKT--GVQTELFH--TFNELHDSGKQI---VICSDREPQKLSEFQDRLVSRFQMGLVAK 259 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCH--HHHHHHHH--HHHHHHTTTCEE---EEEESSCGGGCSSCCHHHHHHHHSSBCCB
T ss_pred HHHHhcCCCCEEEEeCcccccCCh--HHHHHHHH--HHHHHHHCCCeE---EEEECCCHHHHHHHHHHHHhhccCCeEEE
Confidence 111 23456667777763210 11111111 011111222222 3355455543 889999999 6899
Q ss_pred cCCCCHHHHHHHHHHHhch
Q psy14616 145 TQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 145 ~~~~~~~e~~~il~~~l~~ 163 (174)
+.+|+.+++..+++..+..
T Consensus 260 l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 260 LEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 72
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.39 E-value=2.5e-14 Score=97.47 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=74.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEG 80 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (174)
++|++.+.+.+......+.. .+.+++|+||||||||++|+++++..+ +++.+++..+.........+.+ ..+
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~a--~~~ 77 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVEYLIDMPMELLQKA--EGG 77 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTTHHHHCHHHHHHHT--TTS
T ss_pred ceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhhCChHhhhhHHHhC--CCC
Confidence 57888888666655544332 236899999999999999999998775 6777777665432211111111 246
Q ss_pred cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC----CCHHhhcce--eeEecCCC
Q psy14616 81 EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG----IPIDLLDRM--VIIPTQPY 148 (174)
Q Consensus 81 ~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~~~l~sR~--~~i~~~~~ 148 (174)
.++++|+|.+ +. +.+...+. .++... ..+..+ |++++.++.. +.+.+..|+ ..+.++++
T Consensus 78 ~l~lDei~~l-~~---~~q~~Ll~--~l~~~~-~~~~~i--I~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 78 VLYVGDIAQY-SR---NIQTGITF--IIGKAE-RCRVRV--IASCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp EEEEEECTTC-CH---HHHHHHHH--HHHHHT-TTTCEE--EEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred eEEEeChHHC-CH---HHHHHHHH--HHHhCC-CCCEEE--EEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 6778888877 32 22221111 011100 112223 5566433333 556788887 55777775
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.39 E-value=4.6e-13 Score=108.17 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=80.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccc-----ccchhhhhhh-hhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-----EIYSLEMNKT-EEE 74 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~-----~~~~~~~~~~-~~~ 74 (174)
|+|++++++.+.... .. +.++||+||||||||++|+++|+.++...++....+. ++++...... ...
T Consensus 24 ivGq~~~i~~l~~al---~~----~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~ 96 (500)
T 3nbx_X 24 LYERSHAIRLCLLAA---LS----GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE 96 (500)
T ss_dssp CSSCHHHHHHHHHHH---HH----TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-------
T ss_pred hHHHHHHHHHHHHHH---hc----CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhc
Confidence 689999996554433 32 3699999999999999999999998654444443332 1111100000 000
Q ss_pred h---hh------ccCcEEEEEEeccCCCCCC------ccceeEEEeccchhhhccccccchhhhcccCCC-C--CCCHHh
Q psy14616 75 T---EM------IEGEVVEIQIERPATGLGS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP-H--GIPIDL 136 (174)
Q Consensus 75 ~---~~------~~~~i~~~~id~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~--~l~~~l 136 (174)
. .. .++.++++||+++...... +.+.+.. .......+...+ ++++ |+. . ...+++
T Consensus 97 g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i----~G~~~~~~~~~i--I~AT-N~lpe~~~~~~aL 169 (500)
T 3nbx_X 97 GRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN----GAHVEKIPMRLL--VAAS-NELPEADSSLEAL 169 (500)
T ss_dssp ---CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC----SSSEEECCCCEE--EEEE-SSCCCTTCTTHHH
T ss_pred hhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC----CCCcCCcchhhh--hhcc-ccCCCccccHHHH
Confidence 0 01 2234666777665211100 0011111 011122233332 4555 432 2 255799
Q ss_pred hcce-eeEecCCCCH-HHHHHHHHHHh
Q psy14616 137 LDRM-VIIPTQPYQD-EEIQAILKIRL 161 (174)
Q Consensus 137 ~sR~-~~i~~~~~~~-~e~~~il~~~l 161 (174)
++|| ..+.+++++. ++...|++...
T Consensus 170 ldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 170 YDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp HTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 9999 6688898886 67778887643
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.38 E-value=1.3e-12 Score=97.41 Aligned_cols=153 Identities=15% Similarity=0.200 Sum_probs=85.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhh-h-------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNK-T------- 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~-~------- 71 (174)
+||++.+.+.+......+.. .+.+++|+||||||||++|+++++.++.. .+++.++++.+....... .
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~---~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~ 84 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAP---LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTT---SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---
T ss_pred ceeCCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccc
Confidence 57888777555443333222 24699999999999999999999988643 568888877653211110 0
Q ss_pred -----hhhh---h-hccCcEEEEEEeccCCCCCCccceeEEE--ecc----chhhhc-cccccchhhhcccCCC------
Q psy14616 72 -----EEET---E-MIEGEVVEIQIERPATGLGSKVGKLTMK--TTE----METSYD-LGAKMIEAIGTAYSSP------ 129 (174)
Q Consensus 72 -----~~~~---~-~~~~~i~~~~id~~~~~~~~~~~~~~~~--~~~----~~~~~~-~~~~~~~~i~~~~~~~------ 129 (174)
.... + ...+.++++|+|.+ +. +.+...+. +.. ...... ..+..+ |+++ |..
T Consensus 85 ~~g~~~~~~~~l~~a~~~~l~lDEi~~l-~~---~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~i--I~at-n~~~~~~~~ 157 (265)
T 2bjv_A 85 FTGAQKRHPGRFERADGGTLFLDELATA-PM---MVQEKLLRVIEYGELERVGGSQPLQVNVRL--VCAT-NADLPAMVN 157 (265)
T ss_dssp ------CCCCHHHHTTTSEEEEESGGGS-CH---HHHHHHHHHHHHCEECCCCC--CEECCCEE--EEEE-SSCHHHHHH
T ss_pred cccccccccchhhhcCCcEEEEechHhc-CH---HHHHHHHHHHHhCCeecCCCcccccCCeEE--EEec-CcCHHHHHH
Confidence 0000 0 11345677778776 22 11211100 000 000000 012222 5566 443
Q ss_pred -CCCCHHhhcce--eeEecCCCCH--HHHHHHHHHHhch
Q psy14616 130 -HGIPIDLLDRM--VIIPTQPYQD--EEIQAILKIRLVK 163 (174)
Q Consensus 130 -~~l~~~l~sR~--~~i~~~~~~~--~e~~~il~~~l~~ 163 (174)
..+.++|.+|| ..+.++++.+ +++..+++.++..
T Consensus 158 ~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~ 196 (265)
T 2bjv_A 158 EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQ 196 (265)
T ss_dssp HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHH
Confidence 34789999999 4688899885 7888777766543
No 75
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.38 E-value=6.9e-13 Score=102.28 Aligned_cols=46 Identities=28% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++|++.+++.+... ...+. ..++||+||||||||++|+++++.++.
T Consensus 26 i~G~~~~~~~l~~~---~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 26 IVGQEDMKLALLLT---AVDPG--IGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp SCSCHHHHHHHHHH---HHCGG--GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred ccChHHHHHHHHHH---hhCCC--CceEEEECCCCccHHHHHHHHHHhCcc
Confidence 68999987653322 22222 247999999999999999999999863
No 76
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.36 E-value=1.1e-12 Score=89.35 Aligned_cols=132 Identities=18% Similarity=0.100 Sum_probs=74.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhhhhh-hhc
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTEEET-EMI 78 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (174)
+||++...+.+......+. ..+.+++|+||||||||++|+++++.... ..+++ +++..+... ....... ...
T Consensus 3 iiG~s~~~~~~~~~~~~~a---~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~~a~ 76 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLS---ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIALAQ 76 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHT---TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHHHHT
T ss_pred ceeCCHHHHHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHHHcC
Confidence 5788887755554443332 23468999999999999999999998733 34566 776654332 0000111 123
Q ss_pred cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC------CCCCHHhhcce--eeEecCCC
Q psy14616 79 EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPY 148 (174)
Q Consensus 79 ~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~ 148 (174)
.+.++++|+|.+ +. +.+...+. .......-+..|++++.++ ..+.+.+..|+ ..+.++++
T Consensus 77 ~g~l~ldei~~l-~~---~~q~~Ll~------~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 77 GGTLVLSHPEHL-TR---EQQYHLVQ------LQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp TSCEEEECGGGS-CH---HHHHHHHH------HHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred CcEEEEcChHHC-CH---HHHHHHHH------HHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 467788888887 32 22211100 0011111112255663322 35788999998 56778775
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.35 E-value=1.2e-12 Score=110.74 Aligned_cols=154 Identities=19% Similarity=0.132 Sum_probs=82.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC--------CCeeeecccccch--hhhhh
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD--------TPFTSMAGSEIYS--LEMNK 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~--------~~~~~~~~~~~~~--~~~~~ 70 (174)
+||++..++.+. ..+... .+.+++|+||||||||++|+++|+.+.+. ..+..++.+.+.. .+.+.
T Consensus 188 ~iGr~~~i~~l~---~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~ 262 (758)
T 1r6b_X 188 LIGREKELERAI---QVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_dssp CCSCHHHHHHHH---HHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred ccCCHHHHHHHH---HHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccch
Confidence 589888775544 333433 34699999999999999999999987321 1233333322221 11111
Q ss_pred hh-------hhhhhc-cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCC----CCCCCHHhhc
Q psy14616 71 TE-------EETEMI-EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSS----PHGIPIDLLD 138 (174)
Q Consensus 71 ~~-------~~~~~~-~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~l~s 138 (174)
.+ +..... ++.++++|+|.+........+..... ..+..........+ |++++.. ...+++++.+
T Consensus 263 ~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~-~~L~~~l~~~~~~~--I~at~~~~~~~~~~~d~aL~~ 339 (758)
T 1r6b_X 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA-NLIKPLLSSGKIRV--IGSTTYQEFSNIFEKDRALAR 339 (758)
T ss_dssp HHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHH-HHHSSCSSSCCCEE--EEEECHHHHHCCCCCTTSSGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHH-HHHHHHHhCCCeEE--EEEeCchHHhhhhhcCHHHHh
Confidence 11 111111 23344445555532211110110000 00111112223333 5555321 3457899999
Q ss_pred ceeeEecCCCCHHHHHHHHHHHhc
Q psy14616 139 RMVIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 139 R~~~i~~~~~~~~e~~~il~~~l~ 162 (174)
||..+.++.|+.++..++++....
T Consensus 340 Rf~~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 340 RFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp GEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987553
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.28 E-value=1.1e-11 Score=94.31 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=86.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhh---------
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNK--------- 70 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~--------- 70 (174)
+||++.+.+.+......+. ..+.++||+||||||||++|+++++...+ ..+++.++++.+....+..
T Consensus 4 iig~s~~~~~~~~~~~~~a---~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~ 80 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVA---PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGA 80 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHC---STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSC
T ss_pred cEECCHHHHHHHHHHHHHh---CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccc
Confidence 5788887766555444332 23469999999999999999999998743 3567788876653311110
Q ss_pred ----hhhhh---hh-ccCcEEEEEEeccCCCCCCccceeEEE--ecc-chh---hhccccccchhhhcccCCC-------
Q psy14616 71 ----TEEET---EM-IEGEVVEIQIERPATGLGSKVGKLTMK--TTE-MET---SYDLGAKMIEAIGTAYSSP------- 129 (174)
Q Consensus 71 ----~~~~~---~~-~~~~i~~~~id~~~~~~~~~~~~~~~~--~~~-~~~---~~~~~~~~~~~i~~~~~~~------- 129 (174)
..... +. ..|.++++|+|.+ +. ..+...+. ... ... .... +.-+..|+++ |..
T Consensus 81 ~tg~~~~~~g~~~~a~~g~L~LDEi~~l-~~---~~q~~Ll~~l~~~~~~~~g~~~~~-~~~~riI~at-n~~l~~~v~~ 154 (304)
T 1ojl_A 81 FTGADKRREGRFVEADGGTLFLDEIGDI-SP---LMQVRLLRAIQEREVQRVGSNQTI-SVDVRLIAAT-HRDLAEEVSA 154 (304)
T ss_dssp CC---CCCCCHHHHHTTSEEEEESCTTC-CH---HHHHHHHHHHHSSBCCBTTBCCCC-BCCCEEEEEE-SSCHHHHHHH
T ss_pred cCchhhhhcCHHHhcCCCEEEEeccccC-CH---HHHHHHHHHHhcCEeeecCCcccc-cCCeEEEEec-CccHHHHHHh
Confidence 00000 11 1345667777776 22 11211100 000 000 0000 1112225565 443
Q ss_pred CCCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhc
Q psy14616 130 HGIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLV 162 (174)
Q Consensus 130 ~~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~ 162 (174)
..+.+.|.+|+ ..+.++++. .+++..+++..+.
T Consensus 155 g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 155 GRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp TSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred CCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 34788999998 457788988 6788888877654
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=7.8e-13 Score=109.09 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCc---------CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKI---------AGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~---------~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
|+||+++++++... +..|.. ...++||+||||||||++|+++|+.++.
T Consensus 297 I~G~e~vk~al~~~---l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 297 IYGHWELKEALALA---LFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp TSCCHHHHHHHTTT---TTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred hcChHHHHHHHHHH---HhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC
Confidence 68999999665432 233310 1128999999999999999999998864
No 80
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=2.4e-12 Score=100.10 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=83.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC----CCCeeeecccccchh-----h----
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP----DTPFTSMAGSEIYSL-----E---- 67 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~----~~~~~~~~~~~~~~~-----~---- 67 (174)
++|++...+.+..+......+. .++.++|+||||||||++++.+++.+.. ...++.+++...... .
T Consensus 22 ~~gr~~e~~~l~~~l~~~~~~~-~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~ 100 (386)
T 2qby_A 22 LPHREDQIRKIASILAPLYREE-KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLES 100 (386)
T ss_dssp CTTCHHHHHHHHHSSGGGGGTC-CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5788888755554442221232 3479999999999999999999998721 234555554321110 0
Q ss_pred -----------hhhhh----hhhhhc--cCcEEEEEEeccCCCCCCccceeEEEeccchhhh---ccccccchhhhcccC
Q psy14616 68 -----------MNKTE----EETEMI--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSY---DLGAKMIEAIGTAYS 127 (174)
Q Consensus 68 -----------~~~~~----~~~~~~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 127 (174)
..... ...... +..++++|+|.+.......... .+.... ...+..+ |++++.
T Consensus 101 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~------~l~~~~~~~~~~~~~~--I~~~~~ 172 (386)
T 2qby_A 101 LDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILY------KLSRINSEVNKSKISF--IGITND 172 (386)
T ss_dssp TSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHH------HHHHHHHSCCC--EEE--EEEESC
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHH------HHhhchhhcCCCeEEE--EEEECC
Confidence 00000 000001 2234555665552211000000 000001 1122333 445522
Q ss_pred CC--CCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616 128 SP--HGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV 162 (174)
Q Consensus 128 ~~--~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~ 162 (174)
.. ..+++.+.+|| ..+.+++++.+++.++++..+.
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 22 45788999999 6899999999999999998664
No 81
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=3.4e-11 Score=93.83 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=87.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcC-CceEEEEcCCCCcHHHHHHHHHHHhCCC--CCeeeecccccchh--hhhhhh---
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIA-GRAILLAGQPGTGKTAIAMGLAQALGPD--TPFTSMAGSEIYSL--EMNKTE--- 72 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~-~~~~ll~GppG~GKT~la~~la~~l~~~--~~~~~~~~~~~~~~--~~~~~~--- 72 (174)
++|++...+.+..+......+..+ .++++|+||||||||++++.+++.+... ..++.+++...... ......
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence 589998887777666554444433 1289999999999999999999998543 45566664432210 000000
Q ss_pred ---------hhhh-------h--ccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhc--cccccchhhhcccCCC
Q psy14616 73 ---------EETE-------M--IEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYD--LGAKMIEAIGTAYSSP 129 (174)
Q Consensus 73 ---------~~~~-------~--~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~ 129 (174)
...+ . ..+ .++++|+|.+ +. ......+. .+..... ..+..+ |+++ +.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~---~~~~~L~~--~~~~~~~~~~~~~~i--I~~~-~~~ 169 (389)
T 1fnn_A 99 NIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-AP---DILSTFIR--LGQEADKLGAFRIAL--VIVG-HND 169 (389)
T ss_dssp TCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CH---HHHHHHHH--HTTCHHHHSSCCEEE--EEEE-SST
T ss_pred CccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-ch---HHHHHHHH--HHHhCCCCCcCCEEE--EEEE-CCc
Confidence 0000 0 012 3344455544 11 11110000 0000000 012233 4444 344
Q ss_pred ---CCCCHHhhccee--eEecCCCCHHHHHHHHHHHhch
Q psy14616 130 ---HGIPIDLLDRMV--IIPTQPYQDEEIQAILKIRLVK 163 (174)
Q Consensus 130 ---~~l~~~l~sR~~--~i~~~~~~~~e~~~il~~~l~~ 163 (174)
..+.+.+.+||. .+.|++|+.+++.++++..+..
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 568899999994 7999999999999999987643
No 82
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.13 E-value=2.9e-10 Score=84.59 Aligned_cols=40 Identities=35% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+..+++....+..+++|+||||||||++|+++|+.++
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3444444443223346899999999999999999999753
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.98 E-value=3.3e-09 Score=98.94 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=73.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hhhhh-hhhhh--------h-c---cCcEEEEEEecc
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EMNKT-EEETE--------M-I---EGEVVEIQIERP 90 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~~--------~-~---~~~i~~~~id~~ 90 (174)
++++||+||||||||++|+.+...+. ...+..++.+...+. .+... ....+ . . .|+-.++++|++
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~-~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSS-LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCS-SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCC-CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccc
Confidence 47999999999999999966655442 234445554332221 11111 11100 0 1 233345566664
Q ss_pred ----CCCCCCccceeEEE----------eccchhhhccccccchhhhcccCCC-----CCCCHHhhcceeeEecCCCCHH
Q psy14616 91 ----ATGLGSKVGKLTMK----------TTEMETSYDLGAKMIEAIGTAYSSP-----HGIPIDLLDRMVIIPTQPYQDE 151 (174)
Q Consensus 91 ----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~l~sR~~~i~~~~~~~~ 151 (174)
.+.++... .+.+. +..........+..+ +|++ |++ ..+++++++||.++.++.|+.+
T Consensus 1346 nmp~~d~yg~q~-~lelLRq~le~gg~yd~~~~~~~~~~~i~l--IaA~-Npp~~gGR~~l~~rllRrf~vi~i~~P~~~ 1421 (2695)
T 4akg_A 1346 NLPKLDKYGSQN-VVLFLRQLMEKQGFWKTPENKWVTIERIHI--VGAC-NPPTDPGRIPMSERFTRHAAILYLGYPSGK 1421 (2695)
T ss_dssp TCSCCCSSSCCH-HHHHHHHHHHTSSEECTTTCCEEEEESEEE--EEEE-CCTTSTTCCCCCHHHHTTEEEEECCCCTTT
T ss_pred ccccccccCchh-HHHHHHHHHhcCCEEEcCCCcEEEecCEEE--EEec-CCCccCCCccCChhhhheeeEEEeCCCCHH
Confidence 11111110 01000 000001111122233 4555 787 4799999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy14616 152 EIQAILKIRLV 162 (174)
Q Consensus 152 e~~~il~~~l~ 162 (174)
++.+|+...+.
T Consensus 1422 ~l~~I~~~il~ 1432 (2695)
T 4akg_A 1422 SLSQIYEIYYK 1432 (2695)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 84
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.72 E-value=7.9e-09 Score=82.39 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcC---cCCceEEEEcCCCCcHHHHHHHH-HHHhC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGK---IAGRAILLAGQPGTGKTAIAMGL-AQALG 50 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~---~~~~~~ll~GppG~GKT~la~~l-a~~l~ 50 (174)
|+||+++|+++.... -.|. ...-|+||.|+||| ||.+|+++ ++.+.
T Consensus 215 I~G~e~vK~aLll~L---~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p 264 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL---FSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP 264 (506)
T ss_dssp STTCHHHHHHHHHHH---TTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHHHH---cCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC
Confidence 689999997766555 2221 00128999999999 99999999 66554
No 85
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.63 E-value=4.2e-08 Score=70.17 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 8 ~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+..+..+++. ....++++|+||||||||++|.++|+.+.
T Consensus 42 ~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 42 ITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455666666653 32245799999999999999999999985
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.63 E-value=6.6e-08 Score=68.80 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCcC--CceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccc
Q psy14616 9 RAAGVVLGMIKEGKIA--GRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSE 62 (174)
Q Consensus 9 ~~l~~~~~~~~~g~~~--~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~ 62 (174)
.++..+..+++..... +.+++|+||||||||++|++++..+... ..+..+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 3445555666654221 2699999999999999999999988322 3344444433
No 87
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.62 E-value=9e-08 Score=74.62 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhh---------h
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNK---------T 71 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~---------~ 71 (174)
++|+......+......+... ...++++|++||||+.+|+++.+..++...|+.++++.+....... .
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~~---~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~ 207 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAKS---KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAF 207 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHTS---CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSS
T ss_pred ccccchHHHHHHhhhhhhhcc---chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcccccc
Confidence 356666555554444444332 3479999999999999999999988776668888887653211100 0
Q ss_pred hh----h---hhh-ccCcEEEEEEeccCCCCCCcccee--EEEe-ccchhhhc--cccccchhhhcccCCC------CCC
Q psy14616 72 EE----E---TEM-IEGEVVEIQIERPATGLGSKVGKL--TMKT-TEMETSYD--LGAKMIEAIGTAYSSP------HGI 132 (174)
Q Consensus 72 ~~----~---~~~-~~~~i~~~~id~~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~~~~~~i~~~~~~~------~~l 132 (174)
.. . -+. ..|-++++||+++ +. +.|.. .+.. ........ ..+.-++.|++++.+. ..+
T Consensus 208 tga~~~~~g~~~~a~~gtlfldei~~l-~~---~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 208 TGALTRKKGKLELADQGTLFLDEVGEL-DQ---RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp SSCCCCEECHHHHTTTSEEEEETGGGS-CH---HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred CCcccccCChHhhcCCCeEEecChhhC-CH---HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 00 0 011 1244666777776 32 22211 1110 00000000 0011122256663332 346
Q ss_pred CHHhhcce--eeEecCCCCH--HHHHHHHHHHhch
Q psy14616 133 PIDLLDRM--VIIPTQPYQD--EEIQAILKIRLVK 163 (174)
Q Consensus 133 ~~~l~sR~--~~i~~~~~~~--~e~~~il~~~l~~ 163 (174)
.+.|..|+ ..+.++|+.+ +++..+++..+.+
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKK 318 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHH
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHH
Confidence 78999999 4577999986 8888888877644
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.60 E-value=3.1e-08 Score=67.60 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..++|+||+|+|||+++++++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999987
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.59 E-value=1.5e-07 Score=88.05 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch-hhhhhhhhhhhhccCcEEEEEEe
Q psy14616 10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS-LEMNKTEEETEMIEGEVVEIQIE 88 (174)
Q Consensus 10 ~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~id 88 (174)
....+..++..+ .+.++.||+|||||++++.+|+.+|.. ++.+++..-.. .+++..-..+.....-+.++|++
T Consensus 634 ~~~tl~~Al~~~----~~~~l~GpaGtGKTe~vk~LA~~lg~~--~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~n 707 (2695)
T 4akg_A 634 GFATLTDSLHQK----YGGCFFGPAGTGKTETVKAFGQNLGRV--VVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFN 707 (2695)
T ss_dssp HHHHHHHHHHTT----CEEEEECCTTSCHHHHHHHHHHTTTCC--CEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTT
T ss_pred HHHHHHHHHHhC----CCCcccCCCCCCcHHHHHHHHHHhCCc--EEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhh
Confidence 334444444443 578899999999999999999999965 66677654322 12222111111112224455555
Q ss_pred ccCCCC-C-C-----------ccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhcceeeEecCCCCHH
Q psy14616 89 RPATGL-G-S-----------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLDRMVIIPTQPYQDE 151 (174)
Q Consensus 89 ~~~~~~-~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~sR~~~i~~~~~~~~ 151 (174)
++-... . . ......+.. ......+.+... .++|. |+. ..+++++++||..+.+..|+.+
T Consensus 708 r~~~evLs~l~~~l~~i~~al~~~~~~i~~--~g~~i~l~~~~~-vfiT~-NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~ 783 (2695)
T 4akg_A 708 RLDEKVLSAVSANIQQIQNGLQVGKSHITL--LEEETPLSPHTA-VFITL-NPGYNGRSELPENLKKSFREFSMKSPQSG 783 (2695)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHTCSEEEC--SSSEEECCTTCE-EEEEE-CCCSSSSCCCCHHHHTTEEEEECCCCCHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHcCCcEEee--CCcEEecCCCce-EEEEe-CCCccCcccccHHHHhheEEEEeeCCCHH
Confidence 541110 0 0 000001110 111222222222 14444 643 5699999999999999999988
Q ss_pred HHHHHHH
Q psy14616 152 EIQAILK 158 (174)
Q Consensus 152 e~~~il~ 158 (174)
.+.+++.
T Consensus 784 ~i~ei~l 790 (2695)
T 4akg_A 784 TIAEMIL 790 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888853
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.57 E-value=1.1e-07 Score=66.48 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCc-CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 9 RAAGVVLGMIKEGKI-AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 9 ~~l~~~~~~~~~g~~-~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.++..+.+++++-.. .+..++|+||||+||||++++++..+
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 334555555554332 35799999999999999999999887
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.47 E-value=1e-06 Score=83.34 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=72.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hh-hhhhhhh--------hh--c---cCcEEEEEEec
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EM-NKTEEET--------EM--I---EGEVVEIQIER 89 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~--------~~--~---~~~i~~~~id~ 89 (174)
++++||+||||||||.++..+...+. ...+..++.+..... .+ +..+... .. . .|+-.++++|+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~-~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFP-DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCT-TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCC-CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecc
Confidence 46999999999999988766555442 133445554332211 11 1111111 11 1 25566777887
Q ss_pred cCCCC----CCcccee----------EEEeccchhhhccccccchhhhcccCCC-----CCCCHHhhcceeeEecCCCCH
Q psy14616 90 PATGL----GSKVGKL----------TMKTTEMETSYDLGAKMIEAIGTAYSSP-----HGIPIDLLDRMVIIPTQPYQD 150 (174)
Q Consensus 90 ~~~~~----~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~l~sR~~~i~~~~~~~ 150 (174)
+.-.. ++. ..+ -+-+..........+..+ +|+ +|++ ..+++.+++||.++.++.|++
T Consensus 1383 iNmp~~D~yGtQ-~~ielLrqlld~~g~yd~~~~~~~~i~d~~~--vaa-mnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~ 1458 (3245)
T 3vkg_A 1383 INLPSTDKYGTQ-RVITFIRQMVEKGGFWRTSDHTWIKLDKIQF--VGA-CNPPTDAGRVQLTHRFLRHAPILLVDFPST 1458 (3245)
T ss_dssp TTCCCCCTTSCC-HHHHHHHHHHHHSEEEETTTTEEEEESSEEE--EEE-ECCTTSTTCCCCCHHHHTTCCEEECCCCCH
T ss_pred cCCCCccccccc-cHHHHHHHHHHcCCeEECCCCeEEEecCeEE--EEE-cCCCCCCCCccCCHHHHhhceEEEeCCCCH
Confidence 72111 110 001 011110011112223333 455 4666 458999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy14616 151 EEIQAILKIRL 161 (174)
Q Consensus 151 ~e~~~il~~~l 161 (174)
+++..|....+
T Consensus 1459 esL~~If~til 1469 (3245)
T 3vkg_A 1459 SSLTQIYGTFN 1469 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999976543
No 92
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.45 E-value=1.9e-07 Score=77.24 Aligned_cols=45 Identities=31% Similarity=0.558 Sum_probs=36.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++||+.+++.+.... +.| ++++|+||||||||++|+++|..+.+.
T Consensus 43 i~G~~~~l~~l~~~i---~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAA---NQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCSCHHHHHHHHHHH---HTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred EECchhhHhhccccc---cCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 689999985555444 443 599999999999999999999988654
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.45 E-value=4.3e-07 Score=69.12 Aligned_cols=41 Identities=22% Similarity=0.393 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCc-CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 10 AAGVVLGMIKEGKI-AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 10 ~l~~~~~~~~~g~~-~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..+.+++++... ++.+++|+||||||||++|.++|+.+.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455556665221 247999999999999999999998775
No 94
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.38 E-value=1.8e-07 Score=72.01 Aligned_cols=133 Identities=13% Similarity=0.058 Sum_probs=74.8
Q ss_pred HHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-C-C--eeeecccccchhhhhhhhhhhh---hcc-CcE-EEE
Q psy14616 15 LGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-T-P--FTSMAGSEIYSLEMNKTEEETE---MIE-GEV-VEI 85 (174)
Q Consensus 15 ~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~---~~~-~~i-~~~ 85 (174)
.+.++ ++.+ +.+||+||+|+||++.+..+++.+.+. . + .+.++. ..+...+.+.+. .+. .++ +++
T Consensus 10 ~~~l~-~~~~-~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~plf~~~kvvii~ 83 (343)
T 1jr3_D 10 RAQLN-EGLR-AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP----NTDWNAIFSLCQAMSLFASRQTLLLL 83 (343)
T ss_dssp HHHHH-HCCC-SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT----TCCHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred HHHHh-cCCC-cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC----CCCHHHHHHHhcCcCCccCCeEEEEE
Confidence 34455 4443 799999999999999999999877321 1 1 122221 123333333332 222 233 333
Q ss_pred EEec-cCCCCCCccceeEEEeccchhhh-ccc-cccchhhhcccCC----CCCCCHHhhcceeeEecCCCCHHHHHHHHH
Q psy14616 86 QIER-PATGLGSKVGKLTMKTTEMETSY-DLG-AKMIEAIGTAYSS----PHGIPIDLLDRMVIIPTQPYQDEEIQAILK 158 (174)
Q Consensus 86 ~id~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~----~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 158 (174)
+.|. + +. ..++.. .... +.+ ++++ .++++... ...+.+++.+||+++.|.+++.+++.++++
T Consensus 84 ~~~~kl-~~---~~~~aL------l~~le~p~~~~~~-il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 84 LPENGP-NA---AINEQL------LTLTGLLHDDLLL-IVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCSSCC-CT---THHHHH------HHHHTTCBTTEEE-EEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CCCCCC-Ch---HHHHHH------HHHHhcCCCCeEE-EEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 4444 3 22 111111 1111 122 2333 13333212 245789999999999999999999999999
Q ss_pred HHhchh
Q psy14616 159 IRLVKN 164 (174)
Q Consensus 159 ~~l~~~ 164 (174)
..+.++
T Consensus 153 ~~~~~~ 158 (343)
T 1jr3_D 153 ARAKQL 158 (343)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 876443
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.28 E-value=8.8e-07 Score=69.30 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=36.9
Q ss_pred CCchHHHHHHHHHHH-HHHHhc--CcCCceEEE--EcCCCCcHHHHHHHHHHHhC
Q psy14616 1 MVGQLQARRAAGVVL-GMIKEG--KIAGRAILL--AGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 1 iiG~~~~~~~l~~~~-~~~~~g--~~~~~~~ll--~GppG~GKT~la~~la~~l~ 50 (174)
++|.+...+.+..+. .....+ . .+.++++ +||||+|||++++.+++.+.
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~-~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGL-SDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCB-CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCC-CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 578887776666655 444444 2 2368899 99999999999999998773
No 96
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.27 E-value=4.1e-06 Score=65.61 Aligned_cols=133 Identities=16% Similarity=0.238 Sum_probs=74.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhh---------hh----hhh---hhc-cCcEEEEE
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNK---------TE----EET---EMI-EGEVVEIQ 86 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~---------~~----~~~---~~~-~~~i~~~~ 86 (174)
..+++++|++|||||++|+++.....+. .+|+.++++.+....+.. .. ... +.. .|-++++|
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 3578999999999999999999877543 578888887653311100 00 000 111 34566667
Q ss_pred EeccCCCCCCccceeEEE--ec-c---chhhhccccccchhhhcccCCC-------CCCCHHhhcce--eeEecCCCC--
Q psy14616 87 IERPATGLGSKVGKLTMK--TT-E---METSYDLGAKMIEAIGTAYSSP-------HGIPIDLLDRM--VIIPTQPYQ-- 149 (174)
Q Consensus 87 id~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~l~sR~--~~i~~~~~~-- 149 (174)
|+.+ +. +.|...+. .. . ....... ..-++.|+++ |.. ..+.+.|..|+ ..+.+|++.
T Consensus 240 i~~l-~~---~~q~~Ll~~l~~~~~~~~g~~~~~-~~~~rii~at-~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR 313 (387)
T 1ny5_A 240 IGEL-SL---EAQAKLLRVIESGKFYRLGGRKEI-EVNVRILAAT-NRNIKELVKEGKFREDLYYRLGVIEIEIPPLRER 313 (387)
T ss_dssp GGGC-CH---HHHHHHHHHHHHSEECCBTCCSBE-ECCCEEEEEE-SSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGC
T ss_pred hhhC-CH---HHHHHHHHHHhcCcEEeCCCCcee-eccEEEEEeC-CCCHHHHHHcCCccHHHHHhhcCCeecCCcchhc
Confidence 7776 22 12211000 00 0 0000000 1112225566 432 45788899999 567888887
Q ss_pred HHHHHHHHHHHhch
Q psy14616 150 DEEIQAILKIRLVK 163 (174)
Q Consensus 150 ~~e~~~il~~~l~~ 163 (174)
.+++..+++..+.+
T Consensus 314 ~~Di~~l~~~~l~~ 327 (387)
T 1ny5_A 314 KEDIIPLANHFLKK 327 (387)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHH
Confidence 48888888776643
No 97
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.25 E-value=1.1e-06 Score=61.10 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|+||+||||+++.|++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57899999999999999999999974
No 98
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.25 E-value=9e-07 Score=61.91 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+..++|.||||+||||+++.||+.+|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3589999999999999999999999843
No 99
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.17 E-value=5.2e-06 Score=62.48 Aligned_cols=46 Identities=30% Similarity=0.397 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhcCc---CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 5 LQARRAAGVVLGMIKEGKI---AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 5 ~~~~~~l~~~~~~~~~g~~---~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..+.+.......-.+.. .+..++|.||||+||||+++.+++.++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444444444333332 246788999999999999999999884
No 100
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=1.6e-06 Score=61.52 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++..++|.||||+||||+++.||+.+|..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 35689999999999999999999999843
No 101
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.16 E-value=1.6e-06 Score=62.74 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE 67 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 67 (174)
++.++|.||||+||+|.|+.||+.+| +..++.++++...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g----~~hIstGdllR~~ 67 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH----FNHLSSGDLLRAE 67 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC----CEEECHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC----CceEcHHHHHHHH
Confidence 46788899999999999999999998 4566766666543
No 102
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.12 E-value=1.8e-06 Score=61.91 Aligned_cols=37 Identities=30% Similarity=0.532 Sum_probs=30.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE 67 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 67 (174)
.++|.||||+||+|.|+.||+.+| +..++.++++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g----~~~istGdllR~~ 38 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG----FVHISTGDILREA 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC----CEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CeEEcHHHHHHHH
Confidence 478999999999999999999998 4566767766533
No 103
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.11 E-value=5.6e-06 Score=61.04 Aligned_cols=47 Identities=32% Similarity=0.343 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCcC---CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 5 LQARRAAGVVLGMIKEGKIA---GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 5 ~~~~~~l~~~~~~~~~g~~~---~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++....+..+...+..+..+ +..++|.||||+||||+++.+++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34444444444444433222 457889999999999999999999873
No 104
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.10 E-value=5.3e-06 Score=60.88 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..++|.||||+||||+|+.|++.+|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999999987
No 105
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.10 E-value=2.5e-06 Score=59.87 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+++.|++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 467889999999999999999999974
No 106
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.09 E-value=2.6e-06 Score=58.66 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.++++|.|+||+||||+++.||+.+|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLE 34 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999843
No 107
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.09 E-value=2.4e-06 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.||||+||||+++.|++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6889999999999999999999983
No 108
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.08 E-value=2.5e-06 Score=58.94 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+.|.||||+||||+++.+|..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999999873
No 109
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.08 E-value=2.4e-06 Score=59.49 Aligned_cols=27 Identities=44% Similarity=0.620 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+++.+++.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999999973
No 110
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.08 E-value=2.8e-06 Score=61.18 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+..++|.|+||+||||+++.||+.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4468999999999999999999999983
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.07 E-value=8.3e-06 Score=77.44 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hhhhhhhhhhhccCc-EEEEEEeccCCCC-CC-c----
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EMNKTEEETEMIEGE-VVEIQIERPATGL-GS-K---- 97 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-i~~~~id~~~~~~-~~-~---- 97 (174)
.+..+.||+|||||++++.+|+.+|+. .+.++|++-... .++....-.- ..|. ..++|++++-... .. .
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~--~~vfnC~~~~d~~~~g~i~~G~~-~~GaW~cfDEfNrl~~~vLSvv~~qi~ 681 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRF--VLVFCCDEGFDLQAMSRIFVGLC-QCGAWGCFDEFNRLEERILSAVSQQIQ 681 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHHHHHH-HHTCEEEEETTTSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCe--EEEEeCCCCCCHHHHHHHHhhHh-hcCcEEEehhhhcCCHHHHHHHHHHHH
Confidence 355789999999999999999999955 566676543321 1221110000 0111 2444554441000 00 0
Q ss_pred ---------cceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhcceeeEecCCCCHHHHHHHHHH
Q psy14616 98 ---------VGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLDRMVIIPTQPYQDEEIQAILKI 159 (174)
Q Consensus 98 ---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 159 (174)
...+.+.. .....+.+... .++| +|+. ..+++.|.+||..+.+..|+.+.+.+|+..
T Consensus 682 ~I~~a~~~~~~~~~~~~---G~~i~l~~~~~-vfiT-mNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 682 TIQVALKENSKEVELLG---GKNISLHQDMG-IFVT-MNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHTCSEECCC------CEECCTTCE-EEEC-BCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEecC---CCEEeecCCeE-EEEE-eCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHH
Confidence 00011110 11222322222 1334 4643 579999999999999999999888888644
No 112
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.06 E-value=6.3e-06 Score=62.84 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=33.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++|.+...+.+.. .+..+ +.++++||+|+|||++++.+++.++
T Consensus 14 ~~gR~~el~~L~~---~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 14 IFDREEESRKLEE---SLENY----PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SCSCHHHHHHHHH---HHHHC----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHH---HHhcC----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 4787777755544 44443 5899999999999999999998874
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.05 E-value=2.9e-06 Score=58.88 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.||||+||||+++.||+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999999983
No 114
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.04 E-value=2.7e-06 Score=59.58 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++|.||||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999886
No 115
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.04 E-value=3.9e-06 Score=58.63 Aligned_cols=26 Identities=46% Similarity=0.735 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|+||+||||+|+.||+.+|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999999984
No 116
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.00 E-value=3.5e-06 Score=64.30 Aligned_cols=38 Identities=24% Similarity=0.522 Sum_probs=30.0
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeee
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSM 58 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~ 58 (174)
|..++..++++||||+|||++|.++|...|..+.|+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 44455678999999999999999999876555556666
No 117
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.00 E-value=3.5e-06 Score=58.87 Aligned_cols=26 Identities=46% Similarity=0.707 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|+||+||||+++.||+.+|.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47889999999999999999999973
No 118
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.00 E-value=5.3e-06 Score=64.06 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=33.4
Q ss_pred CchHHHHHHH-HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 2 VGQLQARRAA-GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 2 iG~~~~~~~l-~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+.+.+.+ ..+...++.|.. .+++|.||||+||||+++++|..++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~--~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYR--VCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSC--EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCe--eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4555555433 333334445544 37999999999999999999998863
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.00 E-value=3.7e-06 Score=58.28 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-HhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ-ALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~-~l~ 50 (174)
..++|.||||+||||+|+.+++ .++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 4688999999999999999998 454
No 120
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.99 E-value=5.8e-06 Score=58.62 Aligned_cols=27 Identities=44% Similarity=0.660 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+|+.|++.++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357889999999999999999999984
No 121
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.98 E-value=5e-06 Score=58.29 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+|+.|++.+|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357889999999999999999999973
No 122
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.98 E-value=6.9e-06 Score=60.64 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+++.||||+||||+|+.||+.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5789999999999999999999984
No 123
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.98 E-value=5.6e-06 Score=59.60 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+++.||+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 458999999999999999999999983
No 124
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.98 E-value=5.3e-06 Score=58.31 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+++.||+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358999999999999999999999973
No 125
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.97 E-value=5.5e-06 Score=58.09 Aligned_cols=26 Identities=50% Similarity=0.756 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-hC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA-LG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~-l~ 50 (174)
+..++|+|+||+||||+++.||+. +|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 458999999999999999999999 66
No 126
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.97 E-value=6e-06 Score=57.17 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..++|.||||+||||+++.++..+|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 346788999999999999999999887
No 127
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.96 E-value=1.2e-05 Score=57.33 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.++++|+||+|||++|..++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999887544
No 128
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.96 E-value=5.3e-06 Score=58.89 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|+||+||||+++.|++.+|.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999973
No 129
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.96 E-value=5.7e-06 Score=58.27 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++|.|+||+||||+++.|++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999998
No 130
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.96 E-value=5.3e-06 Score=59.81 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.||||+||||+++.||+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999999983
No 131
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.94 E-value=6.4e-06 Score=56.76 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|+||+||||+++.|++.+|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999999983
No 132
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.94 E-value=6.1e-06 Score=59.72 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+++.||+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 368999999999999999999999873
No 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.94 E-value=4.1e-06 Score=58.61 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.++|.|+||+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999885
No 134
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.94 E-value=4e-06 Score=58.34 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+..++|.|+||+||||+++.|++.++..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999853
No 135
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.93 E-value=9.9e-06 Score=61.86 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++|.+...+.+.. +.. ..++++||+|+|||++++.+++.++..
T Consensus 15 ~~gR~~el~~L~~----l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 15 FFDREKEIEKLKG----LRA-----PITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp SCCCHHHHHHHHH----TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred hcChHHHHHHHHH----hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4677766644443 232 489999999999999999999988643
No 136
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.93 E-value=7.6e-06 Score=58.08 Aligned_cols=26 Identities=42% Similarity=0.736 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.||+|+||||+++.++..+|
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46889999999999999999999986
No 137
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.93 E-value=6.6e-06 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|+||+||||+++.|++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999875
No 138
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.93 E-value=7.6e-06 Score=57.17 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 23 IAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 23 ~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.++..+.|.||+|+||||+++.++..+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3456889999999999999999998763
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.92 E-value=7.1e-06 Score=57.40 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++|.|+||+||||+++.|++.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999997
No 140
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.92 E-value=7.6e-06 Score=59.50 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+++.||+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358999999999999999999999983
No 141
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.91 E-value=6.9e-06 Score=58.86 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.||||+||||+|+.|++.+|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999873
No 142
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.90 E-value=8e-06 Score=58.14 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..++|.||||+||||+++.|++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999884
No 143
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.90 E-value=7.8e-06 Score=58.52 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.||||+||||+|+.|++.+|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999973
No 144
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.89 E-value=8.1e-06 Score=56.04 Aligned_cols=24 Identities=42% Similarity=0.721 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.||||+||||+++.| +.+|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCC
Confidence 6889999999999999999 88873
No 145
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.87 E-value=1.7e-05 Score=55.13 Aligned_cols=26 Identities=38% Similarity=0.685 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..+.|.|++|+||||+++.++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688899999999999999999988
No 146
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.86 E-value=1e-05 Score=57.44 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..+.|.||+|+||||+++.++..++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356888999999999999999999883
No 147
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.86 E-value=1.1e-05 Score=59.08 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+..+.|.||||+||||+++.+++.+|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4689999999999999999999999743
No 148
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.86 E-value=1e-05 Score=57.39 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++|.|+||+||||+++.|++.+|
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4788999999999999999999987
No 149
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.86 E-value=1.1e-05 Score=57.00 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.|++|+||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5789999999999999999999984
No 150
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.85 E-value=1.1e-05 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.|+||+||||+++.|++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999984
No 151
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.84 E-value=2.3e-05 Score=62.70 Aligned_cols=41 Identities=37% Similarity=0.521 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+|.++. ..+...++++. .++++.|+||||||+++..+++.+
T Consensus 29 ~Q~~av---~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAF---NIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHH---HHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 355555 44455555543 389999999999999999999877
No 152
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.83 E-value=9.2e-06 Score=57.83 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|+||+||||+++.|++.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999998753
No 153
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.83 E-value=1.2e-05 Score=56.37 Aligned_cols=27 Identities=48% Similarity=0.852 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..+.|.||||+||||+++.++..++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 346888999999999999999998754
No 154
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.81 E-value=1.3e-05 Score=57.40 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=23.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.++|.||||+||||+++.|++.+|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999973
No 155
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.81 E-value=1.5e-05 Score=57.41 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.|.||+|+||||+++.+++.+|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999999987
No 156
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.80 E-value=2e-05 Score=56.28 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.+.....++..+.+.||+|+||||+++.++..+.
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344444433223456788999999999999999998874
No 157
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.79 E-value=1.2e-05 Score=57.23 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++|.|+||+||||+++.|++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999874
No 158
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.78 E-value=2e-05 Score=60.24 Aligned_cols=25 Identities=52% Similarity=0.700 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++++||+|+|||++++.||+.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4788999999999999999999997
No 159
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.78 E-value=1.7e-05 Score=57.33 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.++|.||||+||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999997
No 160
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.77 E-value=1.6e-05 Score=56.82 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..++|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356889999999999999999998874
No 161
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.76 E-value=4.7e-05 Score=59.43 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=26.5
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++..++++||||+||||+++.++..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4445678999999999999999999998753
No 162
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.75 E-value=2.1e-05 Score=57.36 Aligned_cols=25 Identities=44% Similarity=0.793 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.||||+||||+++.+|+.+|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999999998
No 163
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.74 E-value=2.1e-05 Score=55.01 Aligned_cols=26 Identities=50% Similarity=0.754 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++|.|+||+||||+++.++..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999884
No 164
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.73 E-value=2e-05 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998
No 165
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.73 E-value=2.1e-05 Score=58.20 Aligned_cols=24 Identities=42% Similarity=0.720 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..++|.|+||+||||+|+.+++.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999984
No 166
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.72 E-value=2.4e-05 Score=55.86 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=25.7
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.|..++..++++||||+|||++++.+|..-+
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSG 45 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4556677899999999999999999998333
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.72 E-value=2e-05 Score=57.19 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=25.8
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
..|..++..++|+||||+|||++++.++..
T Consensus 18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 18 QGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455666778999999999999999999985
No 168
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.72 E-value=2.6e-05 Score=57.45 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+.+.||+|+||||+++.||+.||.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357889999999999999999999983
No 169
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.71 E-value=2.6e-05 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.836 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.+.|.||+|+||||+++.++..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998875
No 170
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.70 E-value=2.3e-05 Score=55.23 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+.++|+||+|+||||+++.|.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999988763
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.70 E-value=2.6e-05 Score=57.53 Aligned_cols=27 Identities=41% Similarity=0.694 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+.|.||+|+||||+++.+|..+|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999999999984
No 172
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.69 E-value=2.7e-05 Score=54.65 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL---GPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l---~~~ 52 (174)
-+.|.|++|+||||+++.|++.+ |..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 47899999999999999999998 754
No 173
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.69 E-value=4.9e-05 Score=62.36 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~ 47 (174)
+||.+...+.+.... .......+.++++||+|+|||++|..+++
T Consensus 126 ~vGR~~~l~~L~~~L---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKL---SKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHH---TTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHH---hcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 578877775554443 33222346888999999999999999874
No 174
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.69 E-value=2e-05 Score=56.66 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.6
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++..+++.||||+|||++++.++..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45556788999999999999999999654
No 175
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.68 E-value=3e-05 Score=54.20 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988
No 176
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.68 E-value=3.1e-05 Score=56.19 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=25.7
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..|..++..++++||||+|||+++..+|..+
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566667789999999999999999887654
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.68 E-value=2.6e-05 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678899999999999999999877
No 178
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.66 E-value=2.5e-05 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++|.||+|+||||+++.++..++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3678999999999999999998654
No 179
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.65 E-value=3.7e-05 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+++.++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578899999999999999999875
No 180
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.65 E-value=2.6e-05 Score=59.83 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+++.||+|+|||+++..||+.++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 47889999999999999999999973
No 181
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.64 E-value=3e-05 Score=55.70 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=25.9
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..|..++..+.|.||+|+||||+++.++..+
T Consensus 19 ~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 19 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455566788899999999999999999754
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.62 E-value=3.6e-05 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+.+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998763
No 183
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.61 E-value=4.7e-05 Score=57.77 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+++.||+|+|||++|..+|+.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35788999999999999999999987
No 184
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.60 E-value=4.5e-05 Score=54.22 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.++.++|.||+|+||||+++.|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357889999999999999999998764
No 185
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.60 E-value=4.3e-05 Score=54.60 Aligned_cols=26 Identities=35% Similarity=0.564 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++|.|+||+||||+++.+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46888999999999999999999874
No 186
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.60 E-value=4.6e-05 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+.+.|++|+||||+|+.|++.+|.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57889999999999999999999884
No 187
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.59 E-value=4.3e-05 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.+.+.|++|+||||+++.++. +|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 578999999999999999999 76
No 188
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.59 E-value=4.5e-05 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++.+.|.||+|+||||+++.++..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4688999999999999999999876
No 189
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.56 E-value=0.00014 Score=54.74 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.+..+.+.||+|+||||+++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345677999999999999999999885
No 190
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.55 E-value=5.7e-05 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+.+.|++|+||||+++.+|+.+|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6789999999999999999999983
No 191
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.55 E-value=6.3e-05 Score=57.19 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+++.||+|+|||+++..+|+.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4678999999999999999999986
No 192
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.54 E-value=5.8e-05 Score=54.81 Aligned_cols=30 Identities=37% Similarity=0.537 Sum_probs=24.9
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
..|..++..++++|+||+|||++|..+|..
T Consensus 24 ~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 24 EGGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 346666788999999999999999988754
No 193
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.53 E-value=5.3e-05 Score=55.10 Aligned_cols=26 Identities=42% Similarity=0.641 Sum_probs=22.9
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHH
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la 46 (174)
|..++..+.|.||+|+||||+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45567789999999999999999998
No 194
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.53 E-value=0.00017 Score=51.12 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHHhcC-cCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 12 GVVLGMIKEGK-IAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 12 ~~~~~~~~~g~-~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+.+.+.... .++..+.+.||+|+||||+++.++..+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444322 234577799999999999999999876
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.53 E-value=9.2e-05 Score=56.34 Aligned_cols=30 Identities=33% Similarity=0.472 Sum_probs=26.2
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..+++.|+||+|||+++..+|...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 566677899999999999999999999765
No 196
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.52 E-value=5.6e-05 Score=53.61 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+.|.||+|+||||+++.++. +|.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Confidence 577999999999999999987 663
No 197
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.51 E-value=6.1e-05 Score=56.61 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..++|.|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999999874
No 198
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.49 E-value=0.00012 Score=55.04 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=25.7
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.+..++..+++.||||+||||+++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455567789999999999999999999766
No 199
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.49 E-value=5e-05 Score=53.99 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++|.||+|+|||++|..+++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 46899999999999999999998764
No 200
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.48 E-value=7.1e-05 Score=59.15 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++++|+||+||||+|+.+++.++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45788999999999999999999886
No 201
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.48 E-value=8.4e-05 Score=53.99 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.||||+||||+++.+++.++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 457889999999999999999999863
No 202
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.47 E-value=8.3e-05 Score=57.58 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=24.7
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++..++++||||+|||+++..++..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556788899999999999999999765
No 203
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.47 E-value=0.0001 Score=53.57 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.+..+.|.|++|+||||+++.+|..+|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346788999999999999999999998
No 204
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.46 E-value=0.0001 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.|++|+||||+++.|++. |
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g 32 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-G 32 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-T
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-C
Confidence 57889999999999999999997 6
No 205
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.46 E-value=8.2e-05 Score=55.45 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=24.1
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++..++++||||+||||+++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33446789999999999999999998754
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.45 E-value=0.00011 Score=52.10 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+++.++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4577899999999999999999876
No 207
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.44 E-value=8.7e-05 Score=52.78 Aligned_cols=26 Identities=42% Similarity=0.571 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999876
No 208
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.44 E-value=8.6e-05 Score=56.69 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..++++||||+|||+++..+|...
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 455556789999999999999999999864
No 209
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.43 E-value=9.1e-05 Score=61.68 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la 46 (174)
...|+.||||||||+++-.+.
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 378899999999997544443
No 210
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.43 E-value=8.1e-05 Score=57.52 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.5
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++..++++||||+|||+++..++..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556789999999999999999998654
No 211
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.43 E-value=8.5e-05 Score=57.54 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=24.6
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++..++++||||+|||++|..+|..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556789999999999999999998764
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.42 E-value=0.00012 Score=50.23 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..+.|.||.|+||||+.+.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678899999999999999999988
No 213
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.42 E-value=0.00012 Score=52.93 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.||+|+||||+.+.++..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56888999999999999999998764
No 214
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.41 E-value=0.00011 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.+.|+|++|+||||+++.+++.+|.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4558999999999999999999873
No 215
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.41 E-value=0.00011 Score=52.46 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.|++|+||||+++.+++.+|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4788999999999999999999998
No 216
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.41 E-value=0.00011 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+++.++..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5678899999999999999999876
No 217
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.41 E-value=4e-05 Score=54.56 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.++|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 218
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.41 E-value=0.00011 Score=52.61 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.|.|++|+||||+++.|+. +|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC
Confidence 4788999999999999999998 76
No 219
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=0.00012 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.||+|+||||+++.++..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46788999999999999999998773
No 220
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.39 E-value=0.00012 Score=57.57 Aligned_cols=26 Identities=35% Similarity=0.681 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..+++.||+|+|||+++..||+.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC
Confidence 46789999999999999999999873
No 221
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.39 E-value=0.00011 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+++.||+|+|||++|..||+.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3688999999999999999999997
No 222
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.38 E-value=0.00012 Score=56.29 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=24.6
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
.|..++..++++||||+|||+++..+|..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35555678889999999999999999986
No 223
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.38 E-value=0.00019 Score=54.33 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+++.+|..+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46888999999999999999998773
No 224
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.37 E-value=0.00011 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.4
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGL 45 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~l 45 (174)
+..+.|.||+|+||||+++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999963
No 225
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.36 E-value=0.00027 Score=57.66 Aligned_cols=43 Identities=21% Similarity=0.158 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHHHHHHHhc-CcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616 2 VGQLQARRAAGVVLGMIKEG-KIAGRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~~g-~~~~~~~ll~GppG~GKT~la~~la~ 47 (174)
+|.+..++.+..+. ..+ ......+.++|++|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L---~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKL---DEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHH---HHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH---hcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 58777775555544 222 22236788999999999999999997
No 226
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.36 E-value=0.00011 Score=55.91 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=24.0
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
|..++..++++||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4445678899999999999999999975
No 227
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.36 E-value=0.00018 Score=57.20 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=26.2
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..+++.|+||+|||+++..+|...
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 567777889999999999999999998754
No 228
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.36 E-value=0.00013 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
.++++.|+|||||||++..+|..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 479999999999999999999876
No 229
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00015 Score=51.18 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+.+.||+|+||||+.+.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 467899999999999999999876
No 230
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.35 E-value=0.00012 Score=67.45 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=25.0
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++.+++|+||||||||++|.+++.+.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999999998765
No 231
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.34 E-value=0.00019 Score=51.09 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
..+.+.||+|+|||++++.||+.||..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 368899999999999999999999943
No 232
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.34 E-value=0.00023 Score=54.67 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=25.8
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..+++.|+||+|||+++..+|..+
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 366667889999999999999999998764
No 233
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.32 E-value=0.00024 Score=56.71 Aligned_cols=30 Identities=37% Similarity=0.574 Sum_probs=25.6
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..+++.|+||+|||+++..+|..+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 456667789999999999999999998755
No 234
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.32 E-value=0.00011 Score=53.34 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 65 (174)
.+-|.||||+||||.|+.|++.++.. .++.++++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~----~is~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIP----QISTGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC----EECHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCC----eeechHHHH
Confidence 34589999999999999999999833 445444443
No 235
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.31 E-value=0.00045 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+++.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999998864
No 236
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.31 E-value=0.00022 Score=55.07 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=25.1
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..+.++||||+|||++++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344456788899999999999999999876
No 237
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.29 E-value=0.00019 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..+++.||+|+||||+.+.++..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45688899999999999999999876
No 238
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.28 E-value=0.00014 Score=57.14 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=24.0
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
.|..++..++|+||||+|||+|++.++..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 45555778999999999999999987743
No 239
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.27 E-value=0.00011 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=16.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHH-HHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLA-QAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la-~~l 49 (174)
+..+.|.||+|+||||+++.++ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678899999999999999999 765
No 240
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.27 E-value=0.00018 Score=53.80 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.|.|++|+||||+|+.|+ .+|
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC
Confidence 468899999999999999999 566
No 241
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.27 E-value=0.0011 Score=47.26 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+++.|++|+|||+++..++..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5888999999999999999998763
No 242
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.26 E-value=0.00017 Score=56.10 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=24.4
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++..++++||||+|||++|..+|..+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 44456789999999999999999998764
No 243
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.26 E-value=0.00021 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+-+.||+|+||||+++.++..+|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34677999999999999999999886
No 244
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00037 Score=48.45 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
...+++.|++|+|||++...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 245
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.25 E-value=0.00023 Score=57.64 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|.+|+||||+|++||+.|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 58889999999999999999999985
No 246
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.25 E-value=0.00023 Score=49.91 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+...+++||+|+||||++..+++.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999997777654
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.24 E-value=0.00021 Score=53.92 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.||+|+||||++..+|..+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688899999999999999999766
No 248
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.24 E-value=0.0008 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+-+.||+|+||||+++.++..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999885
No 249
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.24 E-value=0.00021 Score=58.81 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+++.||||||||+++.+++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 250
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.24 E-value=0.00032 Score=55.87 Aligned_cols=30 Identities=33% Similarity=0.472 Sum_probs=26.1
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++..+++.|+||+|||+++..+|...
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 467777899999999999999999998765
No 251
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.24 E-value=0.00043 Score=54.96 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+++.||+|+||||++..+|..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999776
No 252
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.23 E-value=0.00023 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+++.||+|+||||++..+|..+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4578899999999999999999876
No 253
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.23 E-value=0.00042 Score=52.52 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=25.0
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
...++..+.|.||+|+||||+++.|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 33456788999999999999999999887
No 254
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.20 E-value=0.0002 Score=65.20 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.++.+++|||||||||++|++++.+-
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHh
Confidence 34569999999999999999999754
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.20 E-value=0.00031 Score=53.48 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=22.8
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.|..++ .++++||||+|||+++..++...
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 455554 67899999999999988887554
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.20 E-value=0.00026 Score=53.57 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+++.+|..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999876
No 257
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.20 E-value=0.00055 Score=55.51 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+.++++.||+|+||||+.++++..+...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 4579999999999999999999887543
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.19 E-value=0.00032 Score=48.78 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+.+.||+|+||||+++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999875
No 259
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.19 E-value=0.00025 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+++.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5788999999999999999999984
No 260
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.18 E-value=0.00032 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+.+.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478899999999999999999877
No 261
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.18 E-value=0.00026 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+.+++|.|++|+||||+|..+.+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 579999999999999999999874
No 262
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.16 E-value=0.00021 Score=58.11 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++|.|.||+||||+|+.||+.++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47889999999999999999999853
No 263
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.16 E-value=0.0003 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++|.|++|+||||+++.+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999884
No 264
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.16 E-value=0.00029 Score=53.94 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..+.|.||+|+||||+++.+|..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999876
No 265
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.15 E-value=0.0009 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+.+.|+||+||||++..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999876
No 266
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.14 E-value=0.00047 Score=60.76 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=32.4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+||.+...+.|..++ ..+....+.+.++|+.|+|||+||+.+++.
T Consensus 126 ~vgR~~~~~~l~~~l---~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKL---WKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHH---HTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHH---hhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 578887775555443 332223467889999999999999998864
No 267
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.14 E-value=0.00037 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+.+.|++|+|||++++.||+.+|..
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~ 41 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIH 41 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence 57789999999999999999999843
No 268
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.13 E-value=0.00037 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+.-++|.|++|+||||+++.+++.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999873
No 269
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.12 E-value=0.00054 Score=56.76 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.|+||+||||+|+.|++.|
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998
No 270
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.12 E-value=0.00027 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.-++|.||+|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999987
No 271
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.12 E-value=0.0004 Score=50.03 Aligned_cols=27 Identities=41% Similarity=0.532 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|++|+||||.++.+++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467889999999999999999999975
No 272
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.11 E-value=0.00035 Score=53.10 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..+.+.||+|+||||+++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345777999999999999999998773
No 273
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.11 E-value=0.00039 Score=53.89 Aligned_cols=29 Identities=38% Similarity=0.593 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++..+++.||+|+||||++++++..+...
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35689999999999999999999877543
No 274
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.08 E-value=0.00047 Score=47.75 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
...+++||+|+|||+++++++..++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46779999999999999999998863
No 275
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.08 E-value=0.00037 Score=54.28 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
++..+++.||+|+||||+.++++..+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456889999999999999999998763
No 276
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.07 E-value=0.00039 Score=53.87 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+++.+|..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4578899999999999999999876
No 277
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.07 E-value=0.00039 Score=55.27 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+++.|++|+||||++..||..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999877
No 278
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.05 E-value=0.00033 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+.+.++-.+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45788999999999999999986553
No 279
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.00044 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+++.||+|+||||+.++++..+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 34788999999999999999998763
No 280
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.02 E-value=0.00036 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+.+.++..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 56788999999999999999997653
No 281
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.02 E-value=0.001 Score=50.94 Aligned_cols=28 Identities=21% Similarity=0.551 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
+..+++.||+|+||||+.++++..+...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 4589999999999999999999887543
No 282
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.02 E-value=0.0004 Score=56.78 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.|++|+||||++++||..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 46788999999999999999999985
No 283
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.01 E-value=0.00045 Score=55.67 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 284
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.00 E-value=0.00016 Score=53.33 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++|.|++|+||||+++.|++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45788999999999999999999983
No 285
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.99 E-value=0.00053 Score=55.34 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.8
Q ss_pred hcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
.|..++..+++.|+||+|||+++..+|..+.
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 4666778899999999999999999998764
No 286
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.98 E-value=0.00043 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999998654
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.98 E-value=0.00037 Score=49.89 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+..+.+.||+|+|||||.+.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999865
No 288
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.98 E-value=0.00061 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.-++|.|++|+||||.++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999988
No 289
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.97 E-value=0.00057 Score=49.44 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..++|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467889999999999999999998753
No 290
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.97 E-value=0.00019 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.||+|+||||+++.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3677999999999999999999875
No 291
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.97 E-value=0.00057 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+++.||+|+||||++..+|..+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999876
No 292
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.97 E-value=0.00057 Score=51.74 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.||+|+||||+++.++..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45677999999999999999999875
No 293
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.96 E-value=0.00054 Score=56.86 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999877766554
No 294
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.94 E-value=0.00039 Score=55.18 Aligned_cols=24 Identities=46% Similarity=0.646 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+++.|+||+||||++..+|..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999876
No 295
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.94 E-value=0.00056 Score=54.80 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++|.|.||+||||+++.+++.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999875
No 296
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.94 E-value=0.00046 Score=49.64 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+.+.++-.+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56788999999999999999987653
No 297
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.94 E-value=0.00048 Score=51.03 Aligned_cols=26 Identities=23% Similarity=0.366 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+|||||.+.++..+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55788999999999999999997653
No 298
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.93 E-value=0.00067 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.-++++||+|+||||++..++..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4578889999999999999888766
No 299
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.93 E-value=0.00054 Score=56.70 Aligned_cols=25 Identities=44% Similarity=0.650 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.+.+++.||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3589999999999999988777655
No 300
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.92 E-value=0.00061 Score=50.08 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+..+.+.||+|+||||+.+.++..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999964
No 301
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.92 E-value=0.00057 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4578899999999999999999765
No 302
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.91 E-value=0.00065 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+..+.+.||+|+|||||.+.++-.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999965
No 303
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.90 E-value=0.00053 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+.+.++..+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45788999999999999999987653
No 304
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.89 E-value=0.00069 Score=52.46 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+..+.+.||+|+|||||++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467889999999999999999998753
No 305
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.89 E-value=0.0008 Score=53.19 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++..+++.||+|+||||+.++++..+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4457889999999999999999998854
No 306
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.89 E-value=0.00057 Score=49.57 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999765
No 307
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.88 E-value=0.00053 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999765
No 308
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.88 E-value=0.00064 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
.+++.||+|+||||+.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67899999999999999998754
No 309
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.88 E-value=0.00057 Score=49.94 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+.+.++-.+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55788999999999999999997653
No 310
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.87 E-value=0.00058 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 5678899999999999999998765
No 311
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.87 E-value=0.00057 Score=50.15 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+.+.++..+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56788999999999999999987653
No 312
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.86 E-value=0.0006 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.||+|+|||||.+.++..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 45788999999999999999997653
No 313
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.86 E-value=0.00041 Score=48.12 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+.+.||+|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999999998873
No 314
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.86 E-value=0.00073 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~ 48 (174)
.+++.||+|+||||+.+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6889999999999999999875
No 315
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.86 E-value=0.00062 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+|||||.+.++-.+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56788999999999999999986653
No 316
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.86 E-value=0.00063 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+.+.||+|+||||+.+.++-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999765
No 317
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.85 E-value=0.00057 Score=56.17 Aligned_cols=25 Identities=40% Similarity=0.495 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..++|.|+||+||||+|+.|++.|+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4788999999999999999999986
No 318
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.84 E-value=0.00063 Score=50.51 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+.+.++..+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 56788999999999999999997653
No 319
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.84 E-value=0.00074 Score=52.24 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578899999999999999999655
No 320
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.84 E-value=0.00076 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4578899999999999999999765
No 321
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.83 E-value=0.00064 Score=50.29 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 5678899999999999999998654
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.83 E-value=0.00065 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+|||||.+.++-.+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56788999999999999999997653
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.83 E-value=0.00066 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+|||||.+.++-.+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999998655
No 324
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.00078 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4578899999999999999999655
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.83 E-value=0.00065 Score=50.57 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+|||||.+.++..+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56788999999999999999997653
No 326
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.82 E-value=0.00078 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4578899999999999999999655
No 327
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.82 E-value=0.0009 Score=47.49 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..++|.|++|+|||+++..++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 328
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.82 E-value=0.00085 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~ 48 (174)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 329
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.80 E-value=0.00085 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4578899999999999999999655
No 330
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.80 E-value=0.0022 Score=47.45 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616 7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~ 47 (174)
+...+..+.............+++.|++|+|||++...+..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 21 TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 44444444443433222335899999999999999999874
No 331
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.79 E-value=0.00093 Score=54.27 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=25.8
Q ss_pred HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+..++..+++.||||+||||+++.++..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3355567788999999999999999999765
No 332
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.79 E-value=0.00073 Score=50.14 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++-.+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5678899999999999999998655
No 333
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.79 E-value=0.0018 Score=56.77 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=30.6
Q ss_pred CchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 2 iG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~ 47 (174)
||.+...+.|...+ .... ..+.+.++||.|+|||++|+.+++
T Consensus 131 VGRe~eLeeL~elL---~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQAL---LELR-PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHH---HHCC-SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH---hccC-CCeEEEEEcCCCccHHHHHHHHHH
Confidence 67777775555443 3311 236888999999999999999985
No 334
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.79 E-value=0.00064 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~ 47 (174)
.+++.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999999875
No 335
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.78 E-value=0.00086 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4578899999999999999999655
No 336
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.78 E-value=0.00074 Score=49.74 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578899999999999999999765
No 337
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.77 E-value=0.00092 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~l 49 (174)
++.+.||+|+||||+.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999766
No 338
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.77 E-value=0.00092 Score=45.42 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++.+.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999999999999975
No 339
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.76 E-value=0.00062 Score=47.60 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~ 51 (174)
++++|++|+|||++|+.++.. +.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~ 24 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP 24 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC
Confidence 689999999999999999977 53
No 340
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.76 E-value=0.00066 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 4578899999999999999999655
No 341
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.76 E-value=0.0016 Score=49.14 Aligned_cols=25 Identities=44% Similarity=0.456 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+++.|++|+||||++..+|..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4577889999999999999999876
No 342
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.75 E-value=0.0013 Score=46.54 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l 49 (174)
+.|-|+.|+||||.++.|++.|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999988
No 343
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.75 E-value=0.001 Score=44.78 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 344
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.75 E-value=0.00096 Score=56.91 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
...++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 478899999999998877766554
No 345
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.74 E-value=0.00095 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..++|.|+||+||||++..||..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999776
No 346
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.73 E-value=0.0011 Score=44.40 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~ 48 (174)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 347
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.73 E-value=0.001 Score=45.14 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||++...+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3789999999999999998874
No 348
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.72 E-value=0.0011 Score=44.38 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999988753
No 349
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.71 E-value=0.0012 Score=49.64 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.|++|+||||++..+|..+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4577789999999999999999876
No 350
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.70 E-value=0.00089 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999765
No 351
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.70 E-value=0.0011 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.++..+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 5678899999999999999999643
No 352
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.67 E-value=0.0025 Score=45.38 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
.-+.|-|+.|+||||.++.|++.|..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~ 28 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK 28 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC
Confidence 35778999999999999999999843
No 353
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.67 E-value=0.0029 Score=46.54 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616 8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 8 ~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~ 47 (174)
.+.+..+.+.++........+++.|++|+|||++..++..
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 19 QEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3344444444444322335899999999999999999875
No 354
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.67 E-value=0.0013 Score=44.33 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 355
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.67 E-value=0.0013 Score=44.16 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999998864
No 356
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.67 E-value=0.0013 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998754
No 357
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.65 E-value=0.0014 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 358
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.65 E-value=0.0012 Score=45.50 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..++|.|++|+|||++...++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999985
No 359
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.65 E-value=0.0013 Score=52.19 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+++.|++|+||||++-.||..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999776
No 360
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.65 E-value=0.0014 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 361
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.64 E-value=0.0013 Score=44.48 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~ 47 (174)
.+++.|++|+|||++...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999863
No 362
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.64 E-value=0.0021 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
..+.|.||+|+||||+.++++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 477899999999999999999644
No 363
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.64 E-value=0.0014 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||++...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3789999999999999999885
No 364
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.63 E-value=0.0028 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||||+||||+.+.++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578899999999999999999765
No 365
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.63 E-value=0.0014 Score=60.62 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=24.8
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++.+++++||||||||++|.+++.+.
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44557899999999999999999998654
No 366
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.62 E-value=0.0011 Score=49.87 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+||||+.+.++..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5678899999999999999998654
No 367
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.61 E-value=0.0015 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999998764
No 368
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.61 E-value=0.0014 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.673 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+..++|.|+||+|||+|...++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999854
No 369
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.61 E-value=0.00072 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+||||+.+.+|-.+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578899999999999999999655
No 370
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.0014 Score=44.20 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||++...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3789999999999999999875
No 371
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.60 E-value=0.0013 Score=44.35 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la 46 (174)
-.+++.|++|+|||++...+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999885
No 372
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.60 E-value=0.0053 Score=47.27 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
...+.|.|+||+||||+...++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999754
No 373
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.60 E-value=0.0026 Score=48.33 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+.+++|.|++|+|||++|..+.+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 579999999999999999999874
No 374
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.60 E-value=0.0013 Score=60.04 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=25.3
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
|..++..++++||||+|||++|..+|..+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 45567899999999999999999998765
No 375
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.60 E-value=0.0015 Score=43.81 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~ 48 (174)
.+++.|++|+|||++...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999754
No 376
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.59 E-value=0.0016 Score=43.86 Aligned_cols=23 Identities=17% Similarity=0.497 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999863
No 377
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.58 E-value=0.0016 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999863
No 378
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.58 E-value=0.002 Score=52.60 Aligned_cols=26 Identities=42% Similarity=0.547 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..++|.|++|+||||+|+.|++.++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 35788999999999999999999875
No 379
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.57 E-value=0.0016 Score=44.89 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999863
No 380
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.57 E-value=0.0013 Score=53.40 Aligned_cols=25 Identities=40% Similarity=0.702 Sum_probs=21.2
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHH
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGL 45 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~l 45 (174)
+..++..+++.||+|+|||||++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3345678999999999999999994
No 381
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.56 E-value=0.002 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
...+++||.|+|||++..++...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999877
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.55 E-value=0.0017 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 383
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0016 Score=55.57 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.||||||||+++..++.
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999987665543
No 384
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.55 E-value=0.0018 Score=44.07 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~ 47 (174)
...+++.|++|+|||++...+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 385
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.54 E-value=0.0022 Score=50.80 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+++.||+|+||||++..+|..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999999999999877
No 386
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.54 E-value=0.0017 Score=44.30 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||++...+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4789999999999999999874
No 387
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.52 E-value=0.0018 Score=44.77 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||+++..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 388
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.52 E-value=0.0018 Score=44.05 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999853
No 389
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.51 E-value=0.0019 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999854
No 390
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.51 E-value=0.0019 Score=44.02 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48899999999999999999865
No 391
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.51 E-value=0.0019 Score=43.92 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999864
No 392
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.50 E-value=0.0019 Score=43.60 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 393
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.50 E-value=0.0017 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||++...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999998863
No 394
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.50 E-value=0.0018 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
..+++.|++|+||||++..+|..+.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999998774
No 395
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.48 E-value=0.0019 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 396
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.48 E-value=0.0019 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||+|...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 397
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.48 E-value=0.0019 Score=50.03 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||+|+|||||.+.|+..+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4578899999999999999998554
No 398
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.46 E-value=0.0011 Score=50.19 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+++.++..+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 56788999999999999999997663
No 399
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.46 E-value=0.0017 Score=44.73 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~ 47 (174)
.+++.|++|+|||++...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999875
No 400
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.46 E-value=0.0021 Score=43.86 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999998864
No 401
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.46 E-value=0.002 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 402
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.46 E-value=0.0021 Score=44.03 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 48999999999999999999863
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.44 E-value=0.002 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48899999999999999999864
No 404
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.44 E-value=0.0021 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.||+|+|||||.++++..+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4578899999999999999999755
No 405
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.44 E-value=0.0022 Score=44.49 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||+|...+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999875
No 406
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0022 Score=43.70 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999998764
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0019 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..+.+.||+|+|||||++.++..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45688999999999999999999765
No 408
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.42 E-value=0.0019 Score=44.84 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 409
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.42 E-value=0.0023 Score=43.84 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998753
No 410
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.41 E-value=0.0023 Score=44.28 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||+|...+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999888764
No 411
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.41 E-value=0.0046 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.+.|+||+||||++..++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998765
No 412
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.41 E-value=0.002 Score=47.70 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+.|.|+||+||||+...+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999974
No 413
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.40 E-value=0.0024 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 37999999999999999988864
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.40 E-value=0.0028 Score=48.81 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
.+.-+.|.||+|+||||+.+.++..+..+
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35688999999999999999999987543
No 415
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.40 E-value=0.0031 Score=50.15 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~~ 52 (174)
++..+.+.||+|+||||+.+.++.....+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 45688899999999999999999987543
No 416
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.40 E-value=0.00082 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~ 47 (174)
+..+.|.|++|+||||+.+.++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999998864
No 417
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.40 E-value=0.0022 Score=48.40 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.||+|+|||||.++++ .+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4578899999999999999999 653
No 418
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.39 E-value=0.0048 Score=44.77 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
..++++||+|+|||.++..++..++.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~ 134 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELST 134 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCC
Confidence 36999999999999999999888753
No 419
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.39 E-value=0.0024 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999998864
No 420
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.39 E-value=0.0025 Score=43.58 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998853
No 421
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.38 E-value=0.0013 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
+..+.|.||.|+||||+++.++..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457789999999999999999987
No 422
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0025 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998864
No 423
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.38 E-value=0.0022 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4899999999999999999884
No 424
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.38 E-value=0.0025 Score=44.09 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
-.+++.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999998777544
No 425
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.37 E-value=0.0025 Score=44.15 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 426
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.37 E-value=0.0017 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~ 47 (174)
+.+++|.|++|+|||++|..+.+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999988765
No 427
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0027 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
-.+++.|++|+|||+|...+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 379999999999999999998654
No 428
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.36 E-value=0.0028 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
.++.+++.||+|+|||++++.+++.+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 36799999999999999999999876
No 429
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0026 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.35 E-value=0.0018 Score=44.22 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999998863
No 431
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.35 E-value=0.0026 Score=44.45 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||+|...+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999998754
No 432
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0027 Score=43.91 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999864
No 433
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.34 E-value=0.0027 Score=43.97 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999853
No 434
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.33 E-value=0.0027 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999999864
No 435
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.33 E-value=0.0027 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 436
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.33 E-value=0.0025 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 437
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.33 E-value=0.0027 Score=44.03 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~~ 48 (174)
.+++.|++|+|||++...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999998863
No 438
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.33 E-value=0.0028 Score=43.82 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998753
No 439
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.33 E-value=0.0028 Score=50.68 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++.++|+||+|+|||+++..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 5689999999999999999888654
No 440
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.32 E-value=0.0027 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 441
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0027 Score=44.76 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999998864
No 442
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.31 E-value=0.0024 Score=44.04 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998864
No 443
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.31 E-value=0.0027 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47999999999999999999864
No 444
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.0028 Score=44.27 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999998753
No 445
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.31 E-value=0.0027 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998763
No 446
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.30 E-value=0.0032 Score=44.66 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+...+++||.|+|||++..++...++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356789999999999999999988853
No 447
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.29 E-value=0.0024 Score=44.07 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 448
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.27 E-value=0.0071 Score=45.51 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
.-.+++.|++|+|||++...+...
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCChHHHHHHHHhC
Confidence 358999999999999999888753
No 449
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.27 E-value=0.0038 Score=48.07 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 21 g~~~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.....-+++.|..|+||||+|-++|..+
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHH
Confidence 33333456678999999999999998776
No 450
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.25 E-value=0.0032 Score=43.72 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 58999999999999999999863
No 451
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.25 E-value=0.0028 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~ 47 (174)
...+++.|++|+|||++...+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999874
No 452
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.25 E-value=0.0029 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..++|.|++|+|||++...+...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999998753
No 453
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.22 E-value=0.0029 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|+||+|||+|...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998853
No 454
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.22 E-value=0.0023 Score=48.22 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.|.||+|+||||+.++++....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 45788999999999999999986553
No 455
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0033 Score=44.16 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4889999999999999999885
No 456
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0031 Score=43.52 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999884
No 457
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.21 E-value=0.0034 Score=44.32 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 458
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.0019 Score=44.24 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la 46 (174)
...+++.|++|+|||++...+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999998875
No 459
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.20 E-value=0.0035 Score=43.46 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 38899999999999999999864
No 460
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.20 E-value=0.0032 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||+|...+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999873
No 461
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.19 E-value=0.0024 Score=44.75 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999998863
No 462
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.17 E-value=0.0034 Score=43.79 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||++...+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998874
No 463
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.17 E-value=0.0043 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
...|+++.||+|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999988654
No 464
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.16 E-value=0.0026 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+.+.||+|+|||||.+.++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3779999999999999999764
No 465
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0037 Score=43.97 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999998863
No 466
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.15 E-value=0.0032 Score=43.85 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la 46 (174)
-.+++.|++|+|||++...+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999885
No 467
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.15 E-value=0.0024 Score=44.67 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la 46 (174)
..+++.|++|+|||+|...++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999885
No 468
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.14 E-value=0.005 Score=50.61 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+++.++..+.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56788999999999999999998764
No 469
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.14 E-value=0.0036 Score=44.40 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||++...+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4899999999999999999874
No 470
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.14 E-value=0.0045 Score=43.61 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+.-.+++||+|+||||.+..+++.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4578899999999999988888766
No 471
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.13 E-value=0.003 Score=43.42 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 472
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.13 E-value=0.002 Score=44.23 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=10.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998874
No 473
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.13 E-value=0.0027 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~ 48 (174)
+.|.||+|+|||||.+.|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999854
No 474
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.13 E-value=0.0037 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
-.+++.|++|+|||+|...+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3789999999999999998874
No 475
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.12 E-value=0.004 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||+++..+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 37899999999999999998753
No 476
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0035 Score=43.58 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy14616 27 AILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 27 ~~ll~GppG~GKT~la~~la~ 47 (174)
.+++.|++|+|||++...+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999863
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.12 E-value=0.0039 Score=43.63 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
..+++.|++|+|||++...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999864
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.11 E-value=0.004 Score=43.86 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998853
No 479
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.08 E-value=0.0038 Score=43.31 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||+|...+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998864
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.05 E-value=0.0044 Score=43.56 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999988853
No 481
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0047 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||+|...+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999998863
No 482
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.02 E-value=0.0069 Score=43.03 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l~~ 51 (174)
|...++++|.||+||+++|..+...+|.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 4567889999999999999999887763
No 483
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.02 E-value=0.0044 Score=50.53 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 24 ~~~~~ll~GppG~GKT~la~~la~~l 49 (174)
++..+.|.||+|+|||||.+.++-.+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688899999999999999999755
No 484
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0081 Score=46.27 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~ 48 (174)
...+++.|+||+||||+...++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998753
No 485
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.01 E-value=0.005 Score=44.46 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la 46 (174)
++.+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4689999999999998665554
No 486
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.00 E-value=0.0044 Score=45.57 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..++|.|+||+||||+..++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3789999999999999999874
No 487
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.00 E-value=0.0044 Score=46.04 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+.|.|+||+|||++...+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3688999999999999999985
No 488
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.00 E-value=0.0058 Score=43.21 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCCCee
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL---GPDTPFT 56 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l---~~~~~~~ 56 (174)
..+++++++|.||||.|-++|.+. |..+-++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 488899999999999999998655 4444344
No 489
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.00 E-value=0.0034 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||++...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 490
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0044 Score=44.22 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLA 46 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la 46 (174)
..+++.|+||+|||+|...+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999887
No 491
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.99 E-value=0.0013 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.605 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l 49 (174)
+..+.|.||||+|||||.++|+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 5688999999999999999997544
No 492
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.97 E-value=0.0047 Score=45.46 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..++|.|+||+|||++...+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999974
No 493
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.95 E-value=0.0049 Score=42.97 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999886654
No 494
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.95 E-value=0.0016 Score=47.17 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616 28 ILLAGQPGTGKTAIAMGLAQALGP 51 (174)
Q Consensus 28 ~ll~GppG~GKT~la~~la~~l~~ 51 (174)
+.+.||+|+||||+.++++..+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccccc
Confidence 457899999999999999998853
No 495
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.95 E-value=0.0053 Score=43.56 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQA 48 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~ 48 (174)
-.+++.|++|+|||+|...+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 496
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.94 E-value=0.01 Score=44.17 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHh-cC---cCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616 7 ARRAAGVVLGMIKE-GK---IAGRAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 7 ~~~~l~~~~~~~~~-g~---~~~~~~ll~GppG~GKT~la~~la~ 47 (174)
+...+..+.+.+.. |. .....+++.|.||+|||++..++..
T Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 4 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp HHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHC
Confidence 34444555555543 21 1234799999999999999999974
No 497
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.93 E-value=0.0046 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616 25 GRAILLAGQPGTGKTAIAMGLAQALG 50 (174)
Q Consensus 25 ~~~~ll~GppG~GKT~la~~la~~l~ 50 (174)
+..+.+.||+|+||||+++.++..+.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC
Confidence 45788999999999999999998764
No 498
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.92 E-value=0.0061 Score=42.86 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQAL 49 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~~l 49 (174)
+++++.+|+|+|||.++...+..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999887776543
No 499
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.90 E-value=0.016 Score=43.52 Aligned_cols=25 Identities=28% Similarity=0.605 Sum_probs=21.2
Q ss_pred CceEEEEcC-CCCcHHHHHHHHHHHh
Q psy14616 25 GRAILLAGQ-PGTGKTAIAMGLAQAL 49 (174)
Q Consensus 25 ~~~~ll~Gp-pG~GKT~la~~la~~l 49 (174)
++.++++|+ +|+|||+++..+|..+
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHH
Confidence 467888876 8999999999999876
No 500
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.90 E-value=0.0049 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy14616 26 RAILLAGQPGTGKTAIAMGLAQ 47 (174)
Q Consensus 26 ~~~ll~GppG~GKT~la~~la~ 47 (174)
..+++.|++|+|||++...+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998864
Done!