RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14616
(174 letters)
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 123 bits (311), Expect = 3e-34
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 20/142 (14%)
Query: 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
+VGQ AR A GV++ +IK K+AGRA+LLAG PGTGKTA+A+ +AQ LG PF M G
Sbjct: 39 LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98
Query: 61 SEIYSLEMNKTE---------------EETEMIEGEVVEIQI---ERPATGLGSKV--GK 100
SE+YS E+ KTE E E+ EGEV E+ E P G G +
Sbjct: 99 SEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVI 158
Query: 101 LTMKTTEMETSYDLGAKMIEAI 122
+ +KT + L + E++
Sbjct: 159 IGLKTAKGTKQLKLDPSIFESL 180
Score = 55.8 bits (134), Expect = 8e-10
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160
+SPHGIP+DLLDR++II T Y +E++ I+KIR
Sbjct: 342 EDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIR 378
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 88.8 bits (220), Expect = 1e-21
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105
Query: 61 SEIYSLEMNKTEEETE 76
SEI+SLEM+KTE T+
Sbjct: 106 SEIFSLEMSKTEALTQ 121
Score = 53.8 bits (129), Expect = 3e-09
Identities = 23/41 (56%), Positives = 33/41 (80%)
Query: 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163
GT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR +
Sbjct: 234 GTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.40.4.14
Length = 95
Score = 70.9 bits (174), Expect = 6e-17
Identities = 42/50 (84%), Positives = 47/50 (94%)
Query: 73 EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI 122
EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++
Sbjct: 9 EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESL 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-06
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 21/76 (27%)
Query: 5 LQARRAAGVVL-GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
L+ R A V++ G+ G+GKT +A +I
Sbjct: 145 LELRPAKNVLIDGV----------------LGSGKTWVA---LDVCL-SYKVQCKMDFKI 184
Query: 64 YSLEMNKTEEETEMIE 79
+ L + ++E
Sbjct: 185 FWLNLKNCNSPETVLE 200
Score = 40.6 bits (94), Expect = 1e-04
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 18/86 (20%)
Query: 103 MKTTEMETSYD-----------LGAKMIEAIGTAYSSPHGIPIDLLD----RMVIIPTQP 147
+K E L K I TA+++ I L + I P
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 148 YQDEEIQAILKIRLVKNERNEIYNHP 173
+ + AIL L K E N +
Sbjct: 540 KYERLVNAILDF-LPKIEEN-LICSK 563
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 44.0 bits (104), Expect = 7e-06
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
R ILL G PGTGKT IA +A G F + G EI S ++E
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESES 284
Score = 34.0 bits (78), Expect = 0.018
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
+ +L G PG GKT +A +A F S+ G E+ +
Sbjct: 512 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 42.2 bits (100), Expect = 3e-05
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 29 LLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEM 68
LL G+ G GKTAIA GLA + D P MA IYSL++
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEV-MADCTIYSLDI 250
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 41.7 bits (98), Expect = 4e-05
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETE 76
++LL G P +GKTA+A +A+ + PF + + M E +
Sbjct: 65 VSVLLEGPPHSGKTALAAKIAEES--NFPFIKICSPDK----MIGFSETAK 109
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus
aquaticus}
Length = 444
Score = 39.8 bits (94), Expect = 2e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 28 ILLAGQPGTGKTAIAMGLAQ--ALGPDTPFTSMAGSEIYSLEMNKTEEETEMI--EGEV 82
++A +P GKTA A+ +AQ AL IYSLEM + M+ E +
Sbjct: 203 NIIAARPAMGKTAFALTIAQNAALKEGVG------VGIYSLEMPAAQLTLRMMCSEARI 255
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 39.8 bits (93), Expect = 2e-04
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
R ILL G PGTGKT IA +A G F + G EI S ++E
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES 284
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A
{Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A
2r6e_A 2vyf_A 2vye_A
Length = 454
Score = 39.4 bits (93), Expect = 3e-04
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 28 ILLAGQPGTGKTAIAMGLAQ--ALGPDTPFTSMAGSEIYSLEMNKTEEETEMI--EGEV 82
I++A +P GKTA A+ +AQ A + I+SLEM+ + M+ EG +
Sbjct: 206 IIVAARPSVGKTAFALNIAQNVATKTNEN------VAIFSLEMSAQQLVMRMLCAEGNI 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 38.8 bits (91), Expect = 4e-04
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
K+ + LL G PG GKT +A +A PF +MAG+E +E+
Sbjct: 36 AKVP-KGALLLGPPGCGKTLLAKAVATEAQ--VPFLAMAGAEF--VEV 78
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 39.1 bits (91), Expect = 4e-04
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50
K+G RA +L G PG GKT A +AQ LG
Sbjct: 71 KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 38.5 bits (90), Expect = 5e-04
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 27 AILLAGQPGTGKTAIAMGLAQAL 49
A+L+ PG G A+ L++ L
Sbjct: 26 ALLIQALPGMGDDALIYALSRYL 48
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
{Bacillus phage SPP1}
Length = 444
Score = 37.5 bits (88), Expect = 0.001
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 15/61 (24%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE----IYSLEMNKTEEETEMI--EGE 81
+L+A +P GKTA A+ A+ +M+ ++ ++SLEM K E +I G
Sbjct: 200 VLIAARPSMGKTAFALKQAK---------NMSDNDDVVNLHSLEMGKKENIKRLIVTAGS 250
Query: 82 V 82
+
Sbjct: 251 I 251
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A
{Bacillus phage SPP1}
Length = 315
Score = 37.6 bits (88), Expect = 0.001
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 15/61 (24%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE----IYSLEMNKTEEETEMI--EGE 81
+L+A +P GKTA A+ A+ +M+ ++ ++SLEM K E +I G
Sbjct: 71 VLIAARPSMGKTAFALKQAK---------NMSDNDDVVNLHSLEMGKKENIKRLIVTAGS 121
Query: 82 V 82
+
Sbjct: 122 I 122
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET:
DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11
PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Length = 296
Score = 37.2 bits (87), Expect = 0.001
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQI 87
I++ G GK+ A G + LE + E ++I G +++
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKVG----LAMLEESVEETAEDLI-GLHNRVRL 92
Query: 88 ERPATG 93
+ +
Sbjct: 93 RQSDSL 98
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA
replication, ATPase; HET: FLC; 2.50A {Helicobacter
pylori}
Length = 338
Score = 37.0 bits (86), Expect = 0.001
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 28 ILLAGQPGTGKTAIAMGLAQ-ALGPDTPFTSMAGSEIYSLEMNKTEEETEMI--EGEV 82
+++ +P GKT++ M + AL D ++SLEM+ + + +
Sbjct: 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVA------VFSLEMSAEQLALRALSDLTSI 100
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 36.9 bits (86), Expect = 0.001
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
KI + +LL G PGTGKT +A +A PF SM GS +EM
Sbjct: 41 AKIP-KGVLLVGPPGTGKTLLAKAVAGEAH--VPFFSMGGSSF--IEM 83
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 36.9 bits (86), Expect = 0.001
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
GKI + +L+ G PGTGKT +A +A PF +++GS+ +EM
Sbjct: 42 GKIP-KGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDF--VEM 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 36.9 bits (86), Expect = 0.002
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
+I + +LL G PG GKT +A +A PF + +GS+ +EM
Sbjct: 46 ARIP-KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF--VEM 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 36.9 bits (86), Expect = 0.002
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
+I + +LL G PG GKT +A +A PF + +GS+ +EM
Sbjct: 70 ARIP-KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF--VEM 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 36.6 bits (84), Expect = 0.002
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF 55
+AG L G GK+ +A+ LA +
Sbjct: 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDL 60
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 36.2 bits (83), Expect = 0.002
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 24 AGRAILLAGQPGTGKTAIAMGLAQALGPDT 53
G +LL+G PG+GK+ IA LA G
Sbjct: 8 GGNILLLSGHPGSGKSTIAEALANLPGVPK 37
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 36.2 bits (84), Expect = 0.003
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGK+ +A +A T F S++ S++ S
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNST-FFSISSSDLVS 84
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 36.1 bits (84), Expect = 0.003
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
+L +G PGTGKTA A+ LA+ L + + +EMN ++E
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNF-------IEMNASDE 79
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.70A {Plasmodium falciparum}
Length = 187
Score = 35.4 bits (82), Expect = 0.003
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 30 LAGQPGTGKTAIAMGLAQ-ALGPDTPFTSMAGSEIYSLEM 68
L G PG GKTAI GLA + D P S+ G ++ SL++
Sbjct: 48 LLGDPGVGKTAIVEGLAIKIVQGDVP-DSLKGRKLVSLDL 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 36.4 bits (85), Expect = 0.003
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 30 LAGQPGTGKTAIAMGLAQ-ALGPDTPFTSMAGSEIYSLEM 68
L G+PG GKTAI GLAQ + D P + G I SL+M
Sbjct: 196 LIGEPGVGKTAIVEGLAQRIVKGDVP-EGLKGKRIVSLQM 234
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 35.3 bits (82), Expect = 0.004
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 24 AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+ L G G GKT + G+ Q +G S
Sbjct: 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 35.9 bits (82), Expect = 0.004
Identities = 24/187 (12%), Positives = 48/187 (25%), Gaps = 38/187 (20%)
Query: 18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL---------------------------- 49
++ L G+PGTGKT L +
Sbjct: 37 LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96
Query: 50 --GPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTE 107
P ++ E +L + E + + + L + ++ +
Sbjct: 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFN------LAPDILSTFIRLGQ 150
Query: 108 METSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMV--IIPTQPYQDEEIQAILKIRLVKNE 165
+ +G + + + M +I PY ++I IL R
Sbjct: 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL 210
Query: 166 RNEIYNH 172
Y+
Sbjct: 211 AEGSYSE 217
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 35.4 bits (82), Expect = 0.004
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 30 LAGQPGTGKTAIAMGLAQ-ALGPDTPFTSMAGSEIYSLEM 68
L G+PG GKTAI GLAQ + + P + G + +L+M
Sbjct: 48 LIGEPGVGKTAIVEGLAQRIINGEVP-EGLKGRRVLALDM 86
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 36.0 bits (84), Expect = 0.004
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 29 LLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEM 68
+L G+PG GKTAIA GLAQ + + P + + +L+M
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEI-LRDKRVMTLDM 244
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 35.3 bits (81), Expect = 0.005
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I++ G P TGKT ++ LA L
Sbjct: 8 IIVTGHPATGKTTLSQALATGLR 30
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 35.4 bits (81), Expect = 0.005
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 27 AILLAGQPGTGKTAIAMGLAQAL 49
++L G PG+GK+ IA L Q +
Sbjct: 26 CVILVGSPGSGKSTIAEELCQII 48
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 35.3 bits (82), Expect = 0.005
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
ILL G PGTGKT +A +A + F + GSE+
Sbjct: 54 ILLYGPPGTGKTLLAKAVATET--NATFIRVVGSEL 87
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 35.3 bits (81), Expect = 0.006
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R ILL G PGTGK+ +A +A T F S++ S++ S
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNST-FFSISSSDLVS 206
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 35.1 bits (81), Expect = 0.007
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP 54
VGQ + A ++L + G +L+ G GTGK+ LA L
Sbjct: 27 VGQEDMKLA--LLLTAVDPG---IGGVLVFGDRGTGKSTAVRALAALLPEIEA 74
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 34.7 bits (80), Expect = 0.008
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49
G+++A R A + + GK + + L G G GKT + +A L
Sbjct: 33 GRIKAIRFAERFVAEYEPGK-KMKGLYLHGSFGVGKTYLLAAIANEL 78
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 34.3 bits (79), Expect = 0.009
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQAL 49
G+ + G PG GKT +A+ +A+
Sbjct: 38 GKGLTFVGSPGVGKTHLAVATLKAI 62
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 34.4 bits (78), Expect = 0.010
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50
R I+L G GK+ I L L
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 34.8 bits (80), Expect = 0.010
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
+ + G G GK+ + + +G M+ E+ S
Sbjct: 37 LILGIWGGKGQGKSFQCELVFRKMG--INPIMMSAGELES 74
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 34.9 bits (81), Expect = 0.010
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 30 LAGQPGTGKTAIAMGLAQA-LGPDTPFTSMAGSEIYSLEM 68
L G+PG GKTAIA GLAQ + + P + + +L+M
Sbjct: 206 LIGEPGVGKTAIAEGLAQQIINNEVPEI-LRDKRVMTLDM 244
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 34.6 bits (80), Expect = 0.011
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
+L AG PG GKT A+ LA+ L + LE+N ++E
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGE-------NWRHNFLELNASDE 87
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 34.6 bits (80), Expect = 0.011
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
ILL G PGTGK+ +A A A ++ F S++ S++ S
Sbjct: 52 SGILLYGPPGTGKSYLAK--AVATEANSTFFSVSSSDLVS 89
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 34.2 bits (79), Expect = 0.012
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
+L +G PGTGKTA A+ LA+ L + + +EMN ++E
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNF-------IEMNASDE 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 34.5 bits (80), Expect = 0.012
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 62
+I + +LL G PG GKT +A +A PF + +GS+
Sbjct: 61 ARIP-KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 99
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 34.5 bits (80), Expect = 0.012
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 62
++ + ILL G PGTGKT +A +A PF ++GS+
Sbjct: 46 ARMP-KGILLVGPPGTGKTLLARAVAGEAN--VPFFHISGSD 84
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 34.4 bits (79), Expect = 0.012
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
+ ILL G PGTGKT I +A G F S++ S + S
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSG--ATFFSISASSLTS 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 34.2 bits (79), Expect = 0.013
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
+ +LL G PG GKT +A +A F +++ + + S
Sbjct: 55 KGLLLFGPPGNGKTLLARAVATECS--ATFLNISAASLTS 92
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 33.7 bits (77), Expect = 0.020
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
R +LL G PG GKT +A +A F +++ + + S
Sbjct: 149 RGLLLFGPPGNGKTMLAKAVAAESN--ATFFNISAASLTS 186
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 33.9 bits (78), Expect = 0.021
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQALGPD-------TPFTS---MAGSEIYSLEMNKTE 72
++G ++ L G PG K+ IA L A T F++ + G ++
Sbjct: 39 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGR 98
Query: 73 EETE----MIEGEVV---EI 85
E + E E+V EI
Sbjct: 99 YERLTSGYLPEAEIVFLDEI 118
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 33.3 bits (76), Expect = 0.024
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 22 KIAGRAILLAGQPGTGKTAIAMGLAQAL 49
+ + L G G GK+ + +A L
Sbjct: 149 SAEQKGLYLYGDMGIGKSYLLAAMAHEL 176
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.7 bits (74), Expect = 0.040
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
+I++ G G+GK+++ +A+A G
Sbjct: 19 GSIVVMGVSGSGKSSVGEAIAEACG 43
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 32.3 bits (73), Expect = 0.041
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
ILL G PG GKT + LA G
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSG 36
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.4 bits (74), Expect = 0.042
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I+L G K+ +A L++ L
Sbjct: 4 IILEGPDCCFKSTVAAKLSKELK 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 32.9 bits (75), Expect = 0.043
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
ILL G PGTGK+ +A +A + F S++ S++ S
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVS 122
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 32.4 bits (74), Expect = 0.048
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 17 MIKEGKIAGRAILLAGQPGTGKTAIAM 43
++ G +LL+G PGTGKT +
Sbjct: 15 ILHGGIPERNVVLLSGGPGTGKTIFSQ 41
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 32.2 bits (72), Expect = 0.057
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52
AILL GQ G GKT I + +
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEFQGN 59
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 32.2 bits (74), Expect = 0.057
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
+ +L G PG GKT +A +A + F S+ G E+ +
Sbjct: 50 KGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLT 87
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 32.2 bits (73), Expect = 0.061
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 17 MIKEGKIAGRAILLAGQPGTGKTAIAM 43
+I+ G G +LL G GTGKT A
Sbjct: 22 LIEGGFPEGTTVLLTGGTGTGKTTFAA 48
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 32.5 bits (75), Expect = 0.063
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 108 METSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERN 167
+E ++DL + I TA ++ IP L DRM II Y + E I+K L+ +
Sbjct: 216 IEETFDLSKVLF--IATA-NNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIK 272
Query: 168 E 168
E
Sbjct: 273 E 273
Score = 30.2 bits (69), Expect = 0.35
Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 28 IL-LAGQPGTGKTAIAMGLAQALG 50
IL LAG PG GKT++A +A++LG
Sbjct: 110 ILCLAGPPGVGKTSLAKSIAKSLG 133
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 32.3 bits (73), Expect = 0.067
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
R L G +GKT +A L + G
Sbjct: 170 RYWLFKGPIDSGKTTLAAALLELCG 194
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 32.2 bits (73), Expect = 0.069
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
+ G P TGK+ + L LG
Sbjct: 127 NCLAFIGPPNTGKSMLCNSLIHFLG 151
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 32.4 bits (74), Expect = 0.070
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP 54
++GQ A IK R +LL G+PGTGK+ + +A+ L +T
Sbjct: 43 VIGQEHAVEV-------IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETL 89
Score = 26.6 bits (59), Expect = 5.4
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 105 TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL 161
+ T ++ A G + + L R+ + Y + ++ R
Sbjct: 241 GAMVRTEPVPCDFVLVAAGNLDTV-DKMHPALRSRIRGYGYEVYMRTTMPDTIENRR 296
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 31.9 bits (73), Expect = 0.070
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAM 43
G G I L G+PGTGKT ++
Sbjct: 19 GIPQGFFIALTGEPGTGKTIFSL 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.073
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 46 AQALG-P--DTPFTSMAGSEIYSLEMNKTEEETEMIEGEVV--EIQIERPAT-----GLG 95
A+ + P DT F GS++ L + +E + I V E + AT G G
Sbjct: 452 AKDIQIPVYDT-FD---GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 96 --SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP 129
S +G LT + + G ++I A GT +P
Sbjct: 508 GASGLGVLTHRNKD-----GTGVRVIVA-GTLDINP 537
Score = 30.0 bits (67), Expect = 0.45
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 23/75 (30%)
Query: 25 GRAILLAGQPG-TGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIE---G 80
G + +A G++ M A+ P G S + E + G
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMI---AINP--------GRVAASFSQEALQYVVERVGKRTG 1838
Query: 81 EVVEI--------QI 87
+VEI Q
Sbjct: 1839 WLVEIVNYNVENQQY 1853
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 31.4 bits (71), Expect = 0.079
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
++ G G GK+ LA L
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLD 27
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 32.0 bits (72), Expect = 0.080
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQAL 49
+ L G GTGKT ++ + +
Sbjct: 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 32.2 bits (73), Expect = 0.085
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAM 43
G GR+ L++G GTGKT ++
Sbjct: 35 GLPIGRSTLVSGTSGTGKTLFSI 57
Score = 29.9 bits (67), Expect = 0.50
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49
M G IL G GTGKT + +
Sbjct: 273 MCGGGFFKDSIILATGATGTGKTLLVSRFVENA 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.2 bits (70), Expect = 0.095
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
+L G G+GK+A+A +A L
Sbjct: 9 HIYVLMGVSGSGKSAVASEVAHQLH 33
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 31.4 bits (71), Expect = 0.10
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 11 AGVVLGMIKEGKIAGR-AILLAGQPGTGKTAIAMGLAQALG 50
A V K R I L G TGKT IA +A +
Sbjct: 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.8 bits (72), Expect = 0.12
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFT 56
R ++L G PG+GKT +A +
Sbjct: 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVS 1335
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 31.4 bits (72), Expect = 0.13
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS 65
+LLAG PG GKT +A +A G + F S+ G E+ +
Sbjct: 45 AGVLLAGPPGCGKTLLAKAVANESGLN--FISVKGPELLN 82
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 31.3 bits (72), Expect = 0.14
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
+AI L G +GKTA+A+ L + L
Sbjct: 11 KAIFLMGPTASGKTALAIELRKILP 35
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 31.2 bits (70), Expect = 0.14
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQAL 49
I + G GTGKTA+ + L
Sbjct: 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 31.0 bits (71), Expect = 0.14
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
AI L G GKT +AM LA AL
Sbjct: 6 PAIFLMGPTAAGKTDLAMALADALP 30
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 30.6 bits (70), Expect = 0.14
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQALG 50
+L G PG+GK+ I LA+ALG
Sbjct: 2 APKAVLVGLPGSGKSTIGRRLAKALG 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 30.9 bits (69), Expect = 0.16
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 28 ILLAGQPGTGKTAIAMGLA---QALG--PDTPFTSMAGSEIYSLEMNKTEEET-EMIE 79
+ G PGTGKT +A+ +A LG S+ ++ + T +T E+++
Sbjct: 70 MSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.5 bits (68), Expect = 0.17
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQI 87
IL+ G PGTGKT++A +A L F + ++ E + E ++ ++E +
Sbjct: 13 ILITGTPGTGKTSMAEMIAAEL---DGFQHLEVGKL-VKENHFYTEYDTELDTHIIEEKD 68
Query: 88 E 88
E
Sbjct: 69 E 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.3 bits (71), Expect = 0.18
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQ 47
+ + G G GK+ +A +
Sbjct: 148 GWVTIYGMAGCGKSVLAAEAVR 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 30.4 bits (68), Expect = 0.18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 24 AGRAILLAGQPGTGKTAIAMGLAQAL 49
R +++ G G+GKT IA G+A
Sbjct: 28 PTRHVVVMGVSGSGKTTIAHGVADET 53
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 30.6 bits (70), Expect = 0.19
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 1 MVGQ---LQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49
+VGQ L A + G+I A L +G G GKT+IA LA+ L
Sbjct: 25 VVGQEHVLTALANG------LSLGRIH-HAYLFSGTRGVGKTSIARLLAKGL 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 30.6 bits (69), Expect = 0.21
Identities = 13/58 (22%), Positives = 22/58 (37%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEI 85
+LL G GTGK M L +++ + + N+ E + +EI
Sbjct: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 30.6 bits (70), Expect = 0.23
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50
I+ G + +++L G PGTGKT +A +A+
Sbjct: 44 AIEAGHLH--SMILWGPPGTGKTTLAEVIARYAN 75
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 29.9 bits (67), Expect = 0.27
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I + G G GKT A L + L
Sbjct: 8 IWINGPFGVGKTHTAHTLHERLP 30
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 29.7 bits (67), Expect = 0.32
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 5 LQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP 54
+ VL + + + + L+G PG+GK+ ++ LA AL
Sbjct: 2 MTLAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGL 51
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 29.8 bits (67), Expect = 0.33
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQI 87
I+L G PG GK+ + LA+ L + + GS++ +E+ E + I
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLI 66
Query: 88 ER 89
+
Sbjct: 67 DS 68
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A
family, amino-acid biosynthesis, metallopeptidase; 1.90A
{Rhodopseudomonas palustris}
Length = 433
Score = 30.0 bits (68), Expect = 0.38
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 103 MKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL 161
M T + S + + A+ ++ + L RMV + ++ Q L +
Sbjct: 2 MATETLTKSDAITQSLRAAVDRNFNDQ----VAFLQRMVQFRSVRGEEAPQQEWLAQQF 56
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 29.9 bits (67), Expect = 0.40
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
+ ++L G GTGK+ +++ LA
Sbjct: 41 KLLVLMGATGTGKSRLSIDLAAHFP 65
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.1 bits (66), Expect = 0.45
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
I + G G G T + LA+ALG
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALG 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity
clamp, clamp loader, AAA+ ATPase, transferase; HET:
DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20
PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 29.5 bits (67), Expect = 0.47
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 1 MVGQ---LQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49
+VGQ L A + G+I A L +G G GKT+IA LA+ L
Sbjct: 18 VVGQEHVLTALANG------LSLGRIH-HAYLFSGTRGVGKTSIARLLAKGL 62
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 29.7 bits (67), Expect = 0.50
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
+L G PGTGKT+ + LA+ + +++M LE+N +++
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKN-YSNMV------LELNASDD 87
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.4 bits (67), Expect = 0.51
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
+ + + G GKT ++ LA+ L
Sbjct: 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 29.5 bits (67), Expect = 0.56
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFT 56
ILL G G+GKT +A LA+ L D PFT
Sbjct: 54 ILLIGPTGSGKTLLAETLARLL--DVPFT 80
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 29.5 bits (67), Expect = 0.56
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFT 56
ILL G G+GKT +A LA+ L D P
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHL--DIPIA 101
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 29.0 bits (66), Expect = 0.57
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
R I L G G GK+ I LAQ L
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.8 bits (64), Expect = 0.61
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I++ G+PG GKT + + + LG
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 29.1 bits (66), Expect = 0.68
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 2 VGQLQARRAAGVVLGMIKEGKIAGRA---ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+GQ + ++ V ++ K +LL G PG GKT +A +A LG + TS
Sbjct: 15 IGQERLKQKLRVY---LEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 28.7 bits (65), Expect = 0.69
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I L G G GKT++ LA+
Sbjct: 8 IYLIGLMGAGKTSVGSQLAKLTK 30
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 29.1 bits (66), Expect = 0.71
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
I++ G +GKT +++ +A+
Sbjct: 8 FLIVIVGPTASGKTELSIEVAKKFN 32
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.1 bits (64), Expect = 0.71
Identities = 13/170 (7%), Positives = 37/170 (21%), Gaps = 36/170 (21%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVE 84
+ + + K + + L + + + ++ + + E
Sbjct: 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFA 104
Query: 85 IQIERPATGLGSKVGKLTMKTTEMETS-------------------YDL-------GAKM 118
I E + + + +K+
Sbjct: 105 ISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKL 164
Query: 119 IEAIGTAYSSPHGIPIDLLDRMV-------IIPTQPYQDEEIQAILKIRL 161
I + + ++ M I E+Q ++ RL
Sbjct: 165 S-IICV--GGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 29.0 bits (65), Expect = 0.80
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 28 ILLAGQPGTGKTAIAMGLAQAL-GPD 52
+L G PGTGKT+ + L + L GPD
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPD 86
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 28.8 bits (64), Expect = 0.83
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49
+ A +V+ IKE + + G GTG T + + +AL
Sbjct: 31 KNAFNIVMKAIKEK---KHHVTINGPAGTGATTLTKFIIEAL 69
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 28.8 bits (63), Expect = 0.87
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPD 52
A LL GQPG+GKT++ + + +
Sbjct: 34 TAFLLGGQPGSGKTSLRSAIFEETQGN 60
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 28.6 bits (64), Expect = 0.87
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
++ G TGK+ M +
Sbjct: 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 28.8 bits (65), Expect = 0.95
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I++AG G GK+ +++ LAQ
Sbjct: 5 IVIAGTTGVGKSQLSIQLAQKFN 27
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 28.8 bits (65), Expect = 0.95
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 2 VGQLQARRAAGVVL-GMIKEGKIAGR--------AILLAGQPGTGKTAIAMGLAQALGPD 52
+GQ A+RA + L + ++ IL+ G G GKT IA LA+
Sbjct: 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA- 76
Query: 53 TPFTSMAGSEIYSLEMNKTEEETEMIEGEVV 83
PF + ++ + E ++ + +
Sbjct: 77 -PFIKVEATKFTEVGYVGKEVDSIIRDLTDS 106
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 28.7 bits (65), Expect = 1.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 12/36 (33%)
Query: 22 KIAGRAI--LLAG---------QPGTGKTAIAMGLA 46
KI +A+ LL+ Q GTGKTA A L
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTA-AFALT 178
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 28.2 bits (63), Expect = 1.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQALG 50
L+ G +GKT +A+ +AQ G
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQETG 26
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.2 bits (62), Expect = 1.4
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQI 87
+++ G+ G GK+ L +L F + E + E T IE VEI+
Sbjct: 21 LMVVGESGLGKST----LINSL-----FLTDLYPERVISGAAEKIERTVQIEASTVEIEE 71
Query: 88 ERPATGL 94
L
Sbjct: 72 RGVKLRL 78
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 28.1 bits (62), Expect = 1.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQA 48
+ G +L+ G G GK+ A+ L +
Sbjct: 142 VYGVGVLITGDSGIGKSETALELIKR 167
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 28.3 bits (64), Expect = 1.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
+LLAG PG GKT +A +A L + TS
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 27.7 bits (61), Expect = 1.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 28 ILLAGQPGTGKTAIAMGLAQAL 49
L+ G PG+GKT + +
Sbjct: 8 CLITGTPGSGKTLKMVSMMAND 29
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 27.8 bits (62), Expect = 1.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 22 KIAGRAILLAGQPGTGKTAIAMGLAQALG 50
+ GR++ L G G+GKT + +A++LG
Sbjct: 45 YLNGRSMYLVGMMGSGKTTVGKIMARSLG 73
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.7 bits (62), Expect = 1.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPD 52
+ + G +GKT +A L+Q L
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQ 49
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.3 bits (63), Expect = 1.8
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFT 56
R I+L G PG+GKT I +
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVG 1298
Score = 26.3 bits (58), Expect = 6.7
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIE 79
++L G TGKT + +A + G +I ++++ ++
Sbjct: 1612 MMLIGASRTGKTILTRFVA----------WLNGLKIVQPKIHRHSNLSDFDM 1653
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 1.9
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 16/93 (17%)
Query: 80 GEVVEIQIERPATG--LGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHGI-P-- 133
+ E S+ + + T + G A G GI P
Sbjct: 1350 NDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGN 1409
Query: 134 ---------IDLLDRMVIIPTQPYQDEEIQAIL 157
++ + V+ P++ + + ++A+
Sbjct: 1410 RNADNVDKILEQFE-YVLYPSKTLKTDGVRAVS 1441
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 27.4 bits (60), Expect = 2.0
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQI 87
I + + G+G + LA+ LG F ++ S + E+ + + + +
Sbjct: 17 ITIEREYGSGGRIVGKKLAEELG--IHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLL 74
Query: 88 ERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI 122
R G + ++ + +L E +
Sbjct: 75 YRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVM 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 27.4 bits (60), Expect = 2.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQAL 49
R + L G PG GKT + ++ L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 27.3 bits (60), Expect = 2.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQA 48
I G +L+ G G GK+ A+ L Q
Sbjct: 32 IYGLGVLITGDSGVGKSETALELVQR 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 27.4 bits (61), Expect = 2.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDT 53
++++G PG GKT LA L +
Sbjct: 45 MIISGMPGIGKTTSVHCLAHELLGRS 70
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 27.6 bits (62), Expect = 2.3
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 58 MAGSEIYSLEMNKTEEETEMIEGEVVEI----QI 87
+++Y +EM K E + +E +I QI
Sbjct: 290 QMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQI 323
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 27.3 bits (60), Expect = 2.4
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQA 48
I +L+ G+ GK+ +++ L
Sbjct: 14 IDKMGVLITGEANIGKSELSLALIDR 39
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 27.2 bits (61), Expect = 2.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSM 58
I +AG +GKT +A LA+ LG M
Sbjct: 9 IGIAGGTASGKTTLAQALARTLGERVALLPM 39
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 27.3 bits (59), Expect = 2.6
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 28 ILLAGQPGTGKTAIAMGLAQAL 49
I +G G+GK+ ++ + L
Sbjct: 34 IFFSGPQGSGKSFTSIQIYNHL 55
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 27.1 bits (61), Expect = 2.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALG 50
G G + G +GKT +A+ G
Sbjct: 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSG 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 27.1 bits (61), Expect = 2.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPD 52
ILL G PG KT LA+ + D
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTMDLD 73
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTS 57
IL +G G GKT +A ++ + + T+
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANIKTTA 87
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 27.4 bits (61), Expect = 3.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 29 LLAGQPGTGKTAIAMGLAQAL 49
+L G PGTGK+ +A
Sbjct: 208 VLTGGPGTGKSTTTKAVADLA 228
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 26.8 bits (60), Expect = 3.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I+ G G+GK+ +A LA+ L
Sbjct: 7 IVFIGFMGSGKSTLARALAKDLD 29
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 26.9 bits (59), Expect = 3.4
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 10/102 (9%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQI 87
I + + G+G +A LA+ +YS E+ + EV+E
Sbjct: 9 IAIGREFGSGGHLVAKKLAEHY----------NIPLYSKELLDEVAKDGRYSKEVLERFD 58
Query: 88 ERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP 129
E+P V + + I
Sbjct: 59 EKPMNFAFIPVPAGGTTISLEQDIAIRQFNFIRKKANEEKES 100
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 26.9 bits (59), Expect = 3.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQ 47
+ G +LL G+ G GK+ A+ L
Sbjct: 145 VFGVGVLLTGRSGIGKSECALDLIN 169
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 26.4 bits (59), Expect = 4.4
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 30 LAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEI-QIE 88
+ G G+GKT + + +G + +M G ++ ++ + E + ++ I
Sbjct: 35 IMGAIGSGKTLLIERTIERIGNEVKIGAMLG-DVV------SKADYERVRRFGIKAEAIS 87
Query: 89 RPATG 93
TG
Sbjct: 88 ---TG 89
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG
oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida}
SCOP: b.82.2.1 PDB: 1wa6_X
Length = 319
Score = 26.4 bits (59), Expect = 5.0
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 130 HGIPIDLLDRM 140
HGIP +++D +
Sbjct: 39 HGIPREVMDTV 49
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 26.1 bits (58), Expect = 5.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I L G G GKT + A+ L
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLN 50
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 26.3 bits (58), Expect = 5.3
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPD 52
I ++G +GK+ + + + LG +
Sbjct: 28 IGVSGGTASGKSTVCEKIMELLGQN 52
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 26.3 bits (57), Expect = 5.4
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-EIYSLEMNKTEEETEMIEGE 81
+ L+G G GK+ AL PD + E + ++ + ++
Sbjct: 25 LDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAG 84
Query: 82 VVEIQIE 88
V ++
Sbjct: 85 VCYSMLD 91
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 26.2 bits (57), Expect = 5.8
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQALG 50
+ +++ G PG G T + L
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 26.7 bits (59), Expect = 5.8
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL 49
Q A + + +GK + L+ GTGKT +A ++ L
Sbjct: 183 QQIAINR---AVQSVLQGK---KRSLITMATGTGKTVVAFQISWKL 222
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 26.4 bits (59), Expect = 6.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 61 SEIYSLEMNKTEEETEMIEGEVVEI----QI 87
+ +Y LE K EEE + + GEV I QI
Sbjct: 281 ARLYELERKKREEELKALRGEVRPIEWGSQI 311
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 26.0 bits (58), Expect = 6.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
++L G G+GK+++A L AL
Sbjct: 10 LVLIGFMGSGKSSLAQELGLALK 32
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.3 bits (58), Expect = 6.1
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALGPD 52
I ++G +GK+++ + Q LG +
Sbjct: 25 IGVSGGTASGKSSVCAKIVQLLGQN 49
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 26.2 bits (57), Expect = 6.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQAL 49
+ IL G PG+GK+ A
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKN 26
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 25.5 bits (56), Expect = 6.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 59 AGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLG 95
+GS + K + + GE+ I++E+ GLG
Sbjct: 3 SGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLG 39
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 25.9 bits (58), Expect = 6.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 28 ILLAGQPGTGKTAIAMGLAQALG 50
I L G +GK+ + L+++L
Sbjct: 3 IYLIGFMCSGKSTVGSLLSRSLN 25
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 26.3 bits (58), Expect = 7.0
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQALGPDT 53
R ++ G+GKT +AM L T
Sbjct: 109 KRGCIVLP-TGSGKTHVAMAAINELSTPT 136
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 25.9 bits (56), Expect = 7.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQAL 49
LL G GTGKTA+A + + L
Sbjct: 44 PSNALLYGLTGTGKTAVARLVLRRL 68
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent
dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2;
1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A*
1gp4_A* 2brt_A*
Length = 356
Score = 26.1 bits (58), Expect = 7.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 130 HGIPIDLLDRM 140
HGIP DL++R+
Sbjct: 85 HGIPADLMERV 95
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
genomics, NPPSFA, national P protein structural and
functional analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 25.6 bits (57), Expect = 7.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQAL 49
G + L G PG+GKT IA LA L
Sbjct: 13 GIVVWLTGLPGSGKTTIATRLADLL 37
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 25.6 bits (57), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 25 GRAILLAGQPGTGKTAIAMGLAQAL 49
G I + G G+GK+ +A L Q L
Sbjct: 25 GCVIWVTGLSGSGKSTLACALNQML 49
>3igf_A ALL4481 protein; two-domained protein consisting of the
N-terminal alpha-beta the C-terminal all beta domain.,
structural genomics; 2.00A {Nostoc SP}
Length = 374
Score = 26.0 bits (57), Expect = 8.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQAL 49
+ G+ G +T IA+ A+ L
Sbjct: 3 LILTFLGKSGVARTKIAIAAAKLL 26
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 25.5 bits (56), Expect = 8.8
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 26 RAILLAGQPGTGKTAIAMGLAQAL 49
+ IL G PG+GK+ A
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKN 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.360
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,717,725
Number of extensions: 169712
Number of successful extensions: 725
Number of sequences better than 10.0: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 222
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.4 bits)