BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14617
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 2 KFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSRE 61
K K P + +RR +LED++ +IM + D K +L+ +FD E GLDYGG +RE
Sbjct: 18 KLKKQNDIPNKFEMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVARE 77
Query: 62 FFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH 101
+FFL+S+++FNPYYGLFEYSA D YT+QI+P S + H
Sbjct: 78 WFFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDH 117
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 69/100 (69%)
Query: 2 KFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSRE 61
K K P + + R+++ E+++ +IM + D+ K +L+ +F+SE GLDYGG +RE
Sbjct: 17 KLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVARE 76
Query: 62 FFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH 101
+FFLLS+++FNPYYGLFEYSA D YT+QI+P S + H
Sbjct: 77 WFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDH 116
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 69/100 (69%)
Query: 2 KFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSRE 61
K K P + + R+++ E+++ +IM + D+ K +L+ +F+SE GLDYGG +RE
Sbjct: 17 KLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVARE 76
Query: 62 FFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH 101
+FFLLS+++FNPYYGLFEYSA D YT+QI+P S + H
Sbjct: 77 WFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDH 116
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 66/100 (66%)
Query: 2 KFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSRE 61
K K P + R+++ E+++ +I + D+ K +L+ +F+SE GLDYGG +RE
Sbjct: 32 KLKKPADIPNRFEXKLHRNNIFEESYRRIXSVKRPDVLKARLWIEFESEKGLDYGGVARE 91
Query: 62 FFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH 101
+FFLLS++ FNPYYGLFEYSA D YT+QI+P S + H
Sbjct: 92 WFFLLSKEXFNPYYGLFEYSATDNYTLQINPNSGLCNEDH 131
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 10 PRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQ 69
P + +RR ++ EDA+ +IM + +DL K +L +FD E+GLDYGG SREFFFLLS +
Sbjct: 72 PGQCHIKVRRKNIFEDAYQEIMRQTPEDLKK-RLMIKFDGEEGLDYGGVSREFFFLLSHE 130
Query: 70 LFNPYYGLFEYSANDTYTVQISPMSAF 96
+FNP+Y LFEYSA D YT+QI+P S
Sbjct: 131 MFNPFYCLFEYSAYDNYTIQINPNSGI 157
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 10 PRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQ 69
P+ + + + R L ED+F +IM S +DL + +L+ F E+GLDYGG +RE+FFLLS +
Sbjct: 40 PQHIKITVTRKTLFEDSFQQIMSFSPQDLRR-RLWVIFPGEEGLDYGGVAREWFFLLSHE 98
Query: 70 LFNPYYGLFEYSANDTYTVQISPMS 94
+ NP Y LFEY+ D Y +QI+P S
Sbjct: 99 VSNPMYCLFEYAGKDNYCLQINPAS 123
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 10 PRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQ 69
P + +N+ R L ED+F +IM DL + +LY F E+GLDYGG +RE+FFLLS +
Sbjct: 21 PSHVKINVSRQTLFEDSFQQIMALKPYDLRR-RLYVIFRGEEGLDYGGLAREWFFLLSHE 79
Query: 70 LFNPYYGLFEYSANDTYTVQISPMSA 95
+ NP Y LFEY+ + Y +QI+P S
Sbjct: 80 VLNPMYCLFEYAGKNNYCLQINPAST 105
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 15 LNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPY 74
+ + R+ + E+++ ++ KDL K +L +F E+GLDYGG +RE+ +LLS + NPY
Sbjct: 27 IEVSREEIFEESYRQVXKXRPKDLWK-RLXIKFRGEEGLDYGGVAREWLYLLSHEXLNPY 85
Query: 75 YGLFEYSANDTYTVQISPMSA 95
YGLF+YS +D YT+QI+P SA
Sbjct: 86 YGLFQYSRDDIYTLQINPDSA 106
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 4 LKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFF 63
L G + D+++++RRDH+ ED++ ++ S +++ K +LY F+ E+G D GG RE++
Sbjct: 39 LDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEM-KNRLYIVFEGEEGQDAGGLLREWY 97
Query: 64 FLLSRQLFNPYYGLFEYSANDTYTVQISPMS 94
++SR++FNP Y LF S D T I+P S
Sbjct: 98 MIISREMFNPMYALFRTSPGDRVTYTINPSS 128
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 4 LKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFF 63
L G + D+++++RRDH+ ED++ ++ S +++ K +LY F+ E+G D GG RE++
Sbjct: 22 LDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEM-KNRLYIVFEGEEGQDAGGLLREWY 80
Query: 64 FLLSRQLFNPYYGLFEYSANDTYTVQISPMS 94
++SR++FNP Y LF S D T I+P S
Sbjct: 81 MIISREMFNPMYALFRTSPGDRVTYTINPSS 111
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 13 LSLNIRRDHLLEDAFNKIMLASKKDLA--KCKLYAQFDSEDGLDYGGPSREFFFLLSRQL 70
L L +RRDH+++DA ++ + + ++ A K +LY +F+ E G+D GG S+EFF L+ ++
Sbjct: 6 LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEI 65
Query: 71 FNPYYGLFEY 80
FNP G+F Y
Sbjct: 66 FNPDIGMFTY 75
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 3 FLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD--SEDGLDYGGPSR 60
F+KG DL LNI R++L + NKI+ +K++ K K FD +E+ DY +
Sbjct: 110 FVKGVVDSEDLPLNISRENLQQ---NKILKVIRKNIVK-KCLEMFDEVAENKEDY----K 161
Query: 61 EFFFLLSRQLFNPYYGLFEYSAN 83
+F+ + N G+ E +AN
Sbjct: 162 QFYEQFGK---NIKLGIHEDTAN 181
>pdb|1USU|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90
Length = 260
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD 48
+ F+KG DL LN+ R+ L + NKIM +K++ K KL F+
Sbjct: 92 LSFVKGVVDSEDLPLNLSREMLQQ---NKIMKVIRKNIVK-KLIEAFN 135
>pdb|1USV|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|C Chain C, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|E Chain E, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|G Chain G, The Structure Of The Complex Between Aha1 And Hsp90
Length = 260
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD 48
+ F+KG DL LN+ R+ L + NKIM +K++ K KL F+
Sbjct: 92 LSFVKGVVDSEDLPLNLSREMLQQ---NKIMKVIRKNIVK-KLIEAFN 135
>pdb|1HK7|A Chain A, Middle Domain Of Hsp90
pdb|1HK7|B Chain B, Middle Domain Of Hsp90
Length = 288
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDS 49
+ F+KG DL LN+ R+ L + NKIM +K++ K KL F+
Sbjct: 90 LSFVKGVVDSEDLPLNLSREMLQQ---NKIMKVIRKNIVK-KLIEAFNE 134
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 9 QPRDLSLNIRRDHLLEDAFNKIMLASKKDL 38
QP LN+RR H+L+ FNK+ ++DL
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD 48
+ F+KG DL LN+ R+ L + NKIM +K++ K KL F+
Sbjct: 90 LSFVKGVVDSEDLPLNLSREMLQQ---NKIMKVIRKNIVK-KLIEAFN 133
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 9 QPRDLSLNIRRDHLLEDAFNKIMLASKKDL 38
QP LN+RR H+L+ FNK+ ++DL
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD 48
+ F+KG DL LN+ R+ L + NKIM +K++ K KL F+
Sbjct: 362 LSFVKGVVDSEDLPLNLSREMLQQ---NKIMKVIRKNIVK-KLIEAFN 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,288,606
Number of Sequences: 62578
Number of extensions: 121216
Number of successful extensions: 257
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 19
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)