Query psy14617
Match_columns 102
No_of_seqs 121 out of 938
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:18:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0939|consensus 99.9 1.9E-24 4.1E-29 174.8 7.7 93 9-102 360-452 (720)
2 COG5021 HUL4 Ubiquitin-protein 99.9 2.2E-24 4.8E-29 179.7 6.7 95 7-102 509-603 (872)
3 KOG0941|consensus 99.9 5.8E-23 1.3E-27 168.7 8.6 86 9-96 498-583 (850)
4 cd00078 HECTc HECT domain; C-t 99.9 4E-22 8.8E-27 152.4 8.0 87 14-101 2-88 (352)
5 KOG0942|consensus 99.8 3.7E-20 7.9E-25 153.4 6.8 81 13-96 640-725 (1001)
6 KOG0940|consensus 99.8 2E-20 4.4E-25 144.1 4.3 94 7-102 11-104 (358)
7 KOG4427|consensus 99.8 1.9E-19 4.2E-24 147.5 6.7 93 8-102 706-804 (1096)
8 smart00119 HECTc Domain Homolo 99.6 8.7E-16 1.9E-20 117.3 4.9 65 35-101 4-70 (336)
9 KOG0170|consensus 97.2 0.00015 3.2E-09 58.8 1.9 70 8-81 221-290 (621)
10 KOG0943|consensus 95.8 0.017 3.7E-07 51.6 4.9 77 1-79 2430-2522(3015)
11 PF00632 HECT: HECT-domain (ub 94.2 0.035 7.5E-07 41.7 2.3 29 64-93 1-29 (317)
12 PF00786 PBD: P21-Rho-binding 41.5 28 0.0006 20.0 2.2 33 35-69 5-37 (59)
13 COG0244 RplJ Ribosomal protein 33.3 7.3 0.00016 27.4 -1.4 56 4-62 41-96 (175)
14 PF14714 KH_dom-like: KH-domai 28.7 63 0.0014 19.7 2.4 41 7-47 36-79 (80)
15 PF00564 PB1: PB1 domain; Int 28.4 83 0.0018 18.4 2.9 36 15-52 16-51 (84)
16 PF03621 MbtH: MbtH-like prote 28.0 78 0.0017 18.1 2.5 23 71-93 6-30 (54)
17 cd06404 PB1_aPKC PB1 domain is 27.1 1.3E+02 0.0028 18.8 3.6 40 12-52 11-50 (83)
18 COG2877 KdsA 3-deoxy-D-manno-o 26.1 1E+02 0.0023 23.4 3.5 45 45-97 201-246 (279)
19 KOG3147|consensus 26.1 1.2E+02 0.0026 22.9 3.8 45 9-53 38-82 (252)
20 PF03543 Peptidase_C58: Yersin 25.9 31 0.00067 24.8 0.7 18 69-86 156-173 (204)
21 PF08858 IDEAL: IDEAL domain; 24.7 67 0.0015 16.7 1.7 11 60-70 27-37 (37)
22 PF11175 DUF2961: Protein of u 23.5 70 0.0015 23.7 2.2 54 40-95 4-60 (237)
23 PF11976 Rad60-SLD: Ubiquitin- 23.4 70 0.0015 18.3 1.8 38 12-50 12-49 (72)
24 PF15572 Imm26: Immunity prote 21.3 1.1E+02 0.0023 19.7 2.5 36 39-74 52-88 (96)
25 PF14421 LmjF365940-deam: A di 21.1 1.1E+02 0.0024 22.1 2.7 34 57-92 158-191 (193)
26 PF04468 PSP1: PSP1 C-terminal 20.5 75 0.0016 19.6 1.6 25 40-64 53-77 (88)
27 cd06408 PB1_NoxR The PB1 domai 20.3 1.8E+02 0.0039 18.2 3.3 40 9-52 10-49 (86)
28 smart00285 PBD P21-Rho-binding 20.1 1.5E+02 0.0032 15.2 2.9 30 35-66 4-33 (36)
No 1
>KOG0939|consensus
Probab=99.91 E-value=1.9e-24 Score=174.76 Aligned_cols=93 Identities=34% Similarity=0.575 Sum_probs=88.8
Q ss_pred CCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcEEE
Q psy14617 9 QPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTV 88 (102)
Q Consensus 9 ~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~~~ 88 (102)
+.+.+.+.|+|+.+++||++++...++++|+. ++.|+|.||+|+|+|||+||||.++++++|||+++||...++++.++
T Consensus 360 ~~~~~~v~v~R~~v~~~S~~~~~~~s~~e~~~-rl~I~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt~ 438 (720)
T KOG0939|consen 360 SSEKLAVLVRRALVLEDSFRALLYKSPEELKT-RLEVTFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGSDQTTF 438 (720)
T ss_pred cCCcceEEEeHHHHHHHHHHHHHhCCHHHHhc-ceEEEEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCCCceEE
Confidence 46788999999999999999999999999975 99999999999999999999999999999999999999999888899
Q ss_pred EeCCCCCCCCCCCC
Q psy14617 89 QISPMSAFVDNYHE 102 (102)
Q Consensus 89 ~~np~s~~~~~hl~ 102 (102)
+|||+|..+|+||+
T Consensus 439 ~pn~~s~~np~hLs 452 (720)
T KOG0939|consen 439 HPNPNSYVNPEHLS 452 (720)
T ss_pred eeCCcccCChhhhh
Confidence 99999999999985
No 2
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-24 Score=179.73 Aligned_cols=95 Identities=42% Similarity=0.739 Sum_probs=90.1
Q ss_pred CCCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcE
Q psy14617 7 GTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTY 86 (102)
Q Consensus 7 ~~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~ 86 (102)
...++.+.|.|||+++++||+++++..++.++++ .|.|+|.||+|+|+|||+||||.++++++|+|+++||.++.++.+
T Consensus 509 ~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~-~L~i~F~~EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~ 587 (872)
T COG5021 509 KIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKK-TLEIEFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLY 587 (872)
T ss_pred cccCcceEEEEecccchHHHHHHHHHhchhhhcc-eEEEEecCcccccCCccchHHHHHHhHHhcCCcccceeeeccccc
Confidence 3567789999999999999999999999999865 899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCC
Q psy14617 87 TVQISPMSAFVDNYHE 102 (102)
Q Consensus 87 ~~~~np~s~~~~~hl~ 102 (102)
+++|||.|.++|+||+
T Consensus 588 ~~~~n~~s~~npe~L~ 603 (872)
T COG5021 588 TLPINPLSSINPEHLS 603 (872)
T ss_pred ccCcCccccCCHHHHH
Confidence 9999999999999984
No 3
>KOG0941|consensus
Probab=99.88 E-value=5.8e-23 Score=168.73 Aligned_cols=86 Identities=40% Similarity=0.705 Sum_probs=79.7
Q ss_pred CCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcEEE
Q psy14617 9 QPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTV 88 (102)
Q Consensus 9 ~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~~~ 88 (102)
.+|++.|+|||++|++||++++..++..|++| +|+|.|.||+|+|+|||+||||.++++++|+|++|||++.++.+ .+
T Consensus 498 ~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K-~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~-~~ 575 (850)
T KOG0941|consen 498 VSPYLKLTVRRDHLVEDALRQLSMISMSDLKK-QLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESS-LL 575 (850)
T ss_pred CCCcEEEEEehhhhHHHHHHHHHhhhhhhhhc-ceEEEECCCcccccCchHHHHHHHHHHHHcCccccCeecccccc-ee
Confidence 57899999999999999999999999999987 99999999999999999999999999999999999999988764 56
Q ss_pred EeCCCCCC
Q psy14617 89 QISPMSAF 96 (102)
Q Consensus 89 ~~np~s~~ 96 (102)
|+|+...-
T Consensus 576 WF~~~~~~ 583 (850)
T KOG0941|consen 576 WFNPSPFE 583 (850)
T ss_pred eecCCCCC
Confidence 88887654
No 4
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.87 E-value=4e-22 Score=152.37 Aligned_cols=87 Identities=41% Similarity=0.707 Sum_probs=79.5
Q ss_pred EEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcEEEEeCCC
Q psy14617 14 SLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPM 93 (102)
Q Consensus 14 ~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~~~~~np~ 93 (102)
+|+|+|++|++|+++++.+.++.++++ +++|+|.||.|+|+||++||||+++++++++|+.+||..+++++..|+|||.
T Consensus 2 ~i~v~R~~i~~~~~~~l~~~~~~~l~~-~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~~~p~ 80 (352)
T cd00078 2 KITVRRDRILEDALRQLSKVSSSDLKK-VLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYPNPS 80 (352)
T ss_pred eEEEECCcHHHHHHHHHHhcCHHHhcC-ceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEEeCCC
Confidence 689999999999999999999888876 9999999999999999999999999999999999999998874457899999
Q ss_pred CCCCCCCC
Q psy14617 94 SAFVDNYH 101 (102)
Q Consensus 94 s~~~~~hl 101 (102)
+...|+|+
T Consensus 81 ~~~~~~~~ 88 (352)
T cd00078 81 SFADEDHL 88 (352)
T ss_pred cccchhHH
Confidence 98766654
No 5
>KOG0942|consensus
Probab=99.81 E-value=3.7e-20 Score=153.36 Aligned_cols=81 Identities=36% Similarity=0.589 Sum_probs=74.3
Q ss_pred eEEEEcCCchHHHHHHHHHcCCcccccccceEEEEec-----CCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcEE
Q psy14617 13 LSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDS-----EDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYT 87 (102)
Q Consensus 13 ~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~g-----E~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~~ 87 (102)
..++|||++|+||||+++.+....|++. .++|+|++ |+|||+||++|||++.++++.|||++|+|+.+.+ +.
T Consensus 640 ~~~tIRRd~iyeDAfd~f~p~~e~dlk~-~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~--~l 716 (1001)
T KOG0942|consen 640 PSATIRRDHIYEDAFDAFSPKGEPDLKS-SIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETED--HL 716 (1001)
T ss_pred ccEEEehhhhHHHHHHhcCccCCccccc-ceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeeccc--ce
Confidence 6899999999999999999999999854 89999997 7899999999999999999999999999998764 46
Q ss_pred EEeCCCCCC
Q psy14617 88 VQISPMSAF 96 (102)
Q Consensus 88 ~~~np~s~~ 96 (102)
+||||.+++
T Consensus 717 LYPNp~~~~ 725 (1001)
T KOG0942|consen 717 LYPNPTAAM 725 (1001)
T ss_pred ecCCCCchh
Confidence 899999985
No 6
>KOG0940|consensus
Probab=99.80 E-value=2e-20 Score=144.05 Aligned_cols=94 Identities=47% Similarity=0.810 Sum_probs=88.4
Q ss_pred CCCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcE
Q psy14617 7 GTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTY 86 (102)
Q Consensus 7 ~~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~ 86 (102)
+.+++.+.++|+|+++|||+|+++++.++.++++ .+.+.|.||+|.|.||+.||||.++++++|+|.+++|.++.++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~-~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~-~ 88 (358)
T KOG0940|consen 11 PQGPQQSHHKVDRDHLLEDSFNQIMNPKPSDLQK-RLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKD-Y 88 (358)
T ss_pred CCCCceeEEEechhhhHHHHHHHHhCCCchhhhh-cceeecccccccccCCCCcceeeeeccccCCcceeeeeecccc-c
Confidence 3467789999999999999999999999999865 9999999999999999999999999999999999999999887 8
Q ss_pred EEEeCCCCCCCCCCCC
Q psy14617 87 TVQISPMSAFVDNYHE 102 (102)
Q Consensus 87 ~~~~np~s~~~~~hl~ 102 (102)
++|+||.++++|+||+
T Consensus 89 tlq~~P~sg~~p~~l~ 104 (358)
T KOG0940|consen 89 TLWLNPRSGVNPGHLT 104 (358)
T ss_pred ccccCCccCCCCCccc
Confidence 9999999999999985
No 7
>KOG4427|consensus
Probab=99.78 E-value=1.9e-19 Score=147.49 Aligned_cols=93 Identities=26% Similarity=0.453 Sum_probs=83.4
Q ss_pred CCCCc-eEEEEcCCchHHHHHHHHHcCCcccccccceEEEEec-----CCCCCCCCchHHHHHHHHHHhcCCCCCceEEe
Q psy14617 8 TQPRD-LSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDS-----EDGLDYGGPSREFFFLLSRQLFNPYYGLFEYS 81 (102)
Q Consensus 8 ~~~~~-~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~g-----E~GiD~GGl~RE~f~ll~~el~~p~~glF~~~ 81 (102)
..|.. ..|+|+|++|+||.|+|+..++...| |+-|+|+|++ |+|||.|||+|||+..+.+..|||+++||..+
T Consensus 706 a~p~~~t~IvvrR~rivEDGf~qL~~l~~~al-Ks~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstT 784 (1096)
T KOG4427|consen 706 ASPARSTEIVVRRGRIVEDGFQQLNSLGSPAL-KSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTT 784 (1096)
T ss_pred CCccceeEEEEEcccchhhHHHHHHhccchhh-hceEEEEEecccCCcccccCccchHHHHHHHHHHHHhcccccccccC
Confidence 33444 78999999999999999999988778 5799999998 67899999999999999999999999999998
Q ss_pred cCCcEEEEeCCCCCCCCCCCC
Q psy14617 82 ANDTYTVQISPMSAFVDNYHE 102 (102)
Q Consensus 82 ~~~~~~~~~np~s~~~~~hl~ 102 (102)
+.++ .+||.|.|.+.+|||+
T Consensus 785 s~d~-~LyPSPts~~~en~lq 804 (1096)
T KOG4427|consen 785 STDR-RLYPSPTSYHHENHLQ 804 (1096)
T ss_pred CCCc-eecCCchhhhhhchhH
Confidence 8655 5789999999999985
No 8
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.60 E-value=8.7e-16 Score=117.31 Aligned_cols=65 Identities=51% Similarity=0.846 Sum_probs=56.5
Q ss_pred cccccccc-eEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcEEEEeCCCCCC-CCCCC
Q psy14617 35 KKDLAKCK-LYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAF-VDNYH 101 (102)
Q Consensus 35 ~~~l~~~~-l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~~~~~np~s~~-~~~hl 101 (102)
..+|++ + ++|+|.||.|+|+||++||||+++++++++|+.+||.++++++ .+||||.+.. .++||
T Consensus 4 ~~~~~~-~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~-~~~~~p~~~~~~~~~l 70 (336)
T smart00119 4 DEDLKK-SVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDY-LLYPNPRAFFANPEHL 70 (336)
T ss_pred hHHhCC-CeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCC-eEEeCCCccccchHHH
Confidence 457766 7 9999999999999999999999999999999999999987654 6889998765 46554
No 9
>KOG0170|consensus
Probab=97.25 E-value=0.00015 Score=58.79 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=59.2
Q ss_pred CCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEe
Q psy14617 8 TQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYS 81 (102)
Q Consensus 8 ~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~ 81 (102)
-.-++-+++|+|+.||+.|...+.....+ +.-|.|+|.+|.|- +=|++=||++++++++-.++.||..++
T Consensus 221 grL~RkK~risR~~Il~sa~kvm~~ygss---~~vLEIEY~~EvGT-GLGPTLEFYtlVSk~fq~~sLgmWR~~ 290 (621)
T KOG0170|consen 221 GRLTRKKLRISRKTILASALKVMEKYGSS---KAVLEIEYEEEVGT-GLGPTLEFYTLVSKEFQRASLGMWRCN 290 (621)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHhcCC---cceEEEEecccccc-CCCcceeeHHHHHHHHhhccccccccC
Confidence 34456679999999999999988776554 34799999999886 449999999999999999999999874
No 10
>KOG0943|consensus
Probab=95.76 E-value=0.017 Score=51.65 Aligned_cols=77 Identities=27% Similarity=0.431 Sum_probs=53.8
Q ss_pred CCcccCCCCC-CceEEEEcC--CchHHHHHHHHHcC------Cc-------ccccccceEEEEecCCCCCCCCchHHHHH
Q psy14617 1 MKFLKGGTQP-RDLSLNIRR--DHLLEDAFNKIMLA------SK-------KDLAKCKLYAQFDSEDGLDYGGPSREFFF 64 (102)
Q Consensus 1 ~~~l~~~~~~-~~~~l~V~R--~~il~ds~~~l~~~------~~-------~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ 64 (102)
||+||.-+.. ..+.+.|+| +.++.|++.||... +. ..|---+++|+|++|.|- +.||.|-||+
T Consensus 2430 ~EK~RnQhSnvkdi~LdV~Rdp~~LfqdTM~QLhh~fakR~~strslesghaPlAg~RlkVhFiDEPGE-GsGVaRSFYT 2508 (3015)
T KOG0943|consen 2430 MEKLRNQHSNVKDISLDVDRDPDLLFQDTMRQLHHHFAKRCASTRSLESGHAPLAGHRLKVHFIDEPGE-GSGVARSFYT 2508 (3015)
T ss_pred HHHHHhccccccceeeeeccCcchHHHHHHHHHHHHHHHHhhhhhccccCCCcccceeEEEEEecCCCC-CcchHHHHHH
Confidence 4556654442 357888877 67899999998653 11 123223799999999995 7899999999
Q ss_pred HHHHHhcCCCCCceE
Q psy14617 65 LLSRQLFNPYYGLFE 79 (102)
Q Consensus 65 ll~~el~~p~~glF~ 79 (102)
-+.++.+... .+|.
T Consensus 2509 AfAeaclmd~-a~fn 2522 (3015)
T KOG0943|consen 2509 AFAEACLMDE-ALFN 2522 (3015)
T ss_pred HHHHHHhhcc-CCCC
Confidence 9988766432 3443
No 11
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=94.22 E-value=0.035 Score=41.65 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCCCceEEecCCcEEEEeCCC
Q psy14617 64 FLLSRQLFNPYYGLFEYSANDTYTVQISPM 93 (102)
Q Consensus 64 ~ll~~el~~p~~glF~~~~~~~~~~~~np~ 93 (102)
+++++|+|+|+.+||..+++++ .+++||.
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~-~~~~~~~ 29 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNG-LFWPNPN 29 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTC-EEEEECC
T ss_pred CHHHHHhcCccCCCceEcCCCC-EEeCCCc
Confidence 5899999999999998777655 6789986
No 12
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=41.52 E-value=28 Score=19.95 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=23.7
Q ss_pred cccccccceEEEEecCCCCCCCCchHHHHHHHHHH
Q psy14617 35 KKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQ 69 (102)
Q Consensus 35 ~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~e 69 (102)
|.++++ ...|-+.++.|-+. |+-.||-.++.+.
T Consensus 5 P~nf~H-~~HVg~d~~~g~~~-glp~ew~~~l~~~ 37 (59)
T PF00786_consen 5 PTNFKH-VAHVGWDPNTGGFT-GLPPEWEKLLKSS 37 (59)
T ss_dssp -EEEEE-EEEEEEETTTTEEE-S--HHHHHHHHSC
T ss_pred CCCCcc-eeeeccCCCccccc-cCCHHHHhhcccc
Confidence 456766 78899988877655 9999999988765
No 13
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=33.33 E-value=7.3 Score=27.39 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=38.4
Q ss_pred ccCCCCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHH
Q psy14617 4 LKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREF 62 (102)
Q Consensus 4 l~~~~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~ 62 (102)
||..+......+.|-|++++.-+++....-.-.++.+++.-|-|.+| |...+.|-+
T Consensus 41 lR~~lr~~g~~lkV~KNtL~~rAl~~~~~e~l~~~l~Gp~ai~fs~~---dp~~~~K~~ 96 (175)
T COG0244 41 LRKKLREAGAKLKVVKNTLLRRALEEAGLEGLDDLLKGPTAIAFSNE---DPVAAAKLL 96 (175)
T ss_pred HHHHHHhCCcEEEEEhhHHHHHHHHhcchhhHHHhccCCeEEEEecC---CHHHHHHHH
Confidence 33334334578999999999988887654334466678999999988 444444443
No 14
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=28.67 E-value=63 Score=19.68 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=22.9
Q ss_pred CCCCCceEEEEcCCchHHHHHHHHHcC---CcccccccceEEEE
Q psy14617 7 GTQPRDLSLNIRRDHLLEDAFNKIMLA---SKKDLAKCKLYAQF 47 (102)
Q Consensus 7 ~~~~~~~~l~V~R~~il~ds~~~l~~~---~~~~l~~~~l~V~F 47 (102)
+..|+.+.+-+++...+.++|...... +.-++.-.++++.|
T Consensus 36 ~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~~ 79 (80)
T PF14714_consen 36 GTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLIF 79 (80)
T ss_dssp ETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEEE
T ss_pred CCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEEe
Confidence 456889999999999999998864321 12234444666665
No 15
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=28.36 E-value=83 Score=18.40 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=25.9
Q ss_pred EEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCC
Q psy14617 15 LNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDG 52 (102)
Q Consensus 15 l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~G 52 (102)
+.+.++.-+++-...+...=+.. ...+.++|.+|+|
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~Y~D~dg 51 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLL--DEDFQLKYKDEDG 51 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTS--TSSEEEEEEETTS
T ss_pred EEcCCCCCHHHHHHHHHHHhCCC--CccEEEEeeCCCC
Confidence 77888888888777776522211 2489999999988
No 16
>PF03621 MbtH: MbtH-like protein; InterPro: IPR005153 This domain is found in the MbtH protein O05821 from SWISSPROT as well as at the N terminus of the antibiotic synthesis protein NIKP1. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. Many of the members of this family are found in known antibiotic synthesis gene clusters.; PDB: 2PST_X 2GPF_A 2LPD_A 2KHR_A.
Probab=28.04 E-value=78 Score=18.07 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=11.7
Q ss_pred cCCCCCceEE--ecCCcEEEEeCCC
Q psy14617 71 FNPYYGLFEY--SANDTYTVQISPM 93 (102)
Q Consensus 71 ~~p~~glF~~--~~~~~~~~~~np~ 93 (102)
|+...+.|.. +.+++|++||.-.
T Consensus 6 fd~~~~~f~VlvN~e~QySlWP~~~ 30 (54)
T PF03621_consen 6 FDDEDGTFLVLVNDEGQYSLWPAFR 30 (54)
T ss_dssp -S---S-EEEEEETT-SEEEEETTS
T ss_pred CCCCCCeEEEEEcCCCCeeeCcCCC
Confidence 4445555554 6678899998643
No 17
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.10 E-value=1.3e+02 Score=18.84 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=26.1
Q ss_pred ceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCC
Q psy14617 12 DLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDG 52 (102)
Q Consensus 12 ~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~G 52 (102)
-+...+....-++...+.++.+=.. ....++.+++++|+|
T Consensus 11 i~it~~d~~~s~e~L~~~v~~~c~~-~~~q~ft~kw~DEEG 50 (83)
T cd06404 11 IMITSIDPSISLEELCNEVRDMCRF-HNDQPFTLKWIDEEG 50 (83)
T ss_pred EEEEEcCCCcCHHHHHHHHHHHhCC-CCCCcEEEEEECCCC
Confidence 4556666666677777776653221 122489999999988
No 18
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=26.13 E-value=1e+02 Score=23.37 Aligned_cols=45 Identities=29% Similarity=0.242 Sum_probs=30.9
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHhcCCC-CCceEEecCCcEEEEeCCCCCCC
Q psy14617 45 AQFDSEDGLDYGGPSREFFFLLSRQLFNPY-YGLFEYSANDTYTVQISPMSAFV 97 (102)
Q Consensus 45 V~F~gE~GiD~GGl~RE~f~ll~~el~~p~-~glF~~~~~~~~~~~~np~s~~~ 97 (102)
|+-.|-.|- ..|=.|||...+.++...-. .|||..+ +|||....+
T Consensus 201 vQ~pgg~g~-~SGG~refv~~LaRAa~AvGvaGlF~Et-------HpdP~~A~s 246 (279)
T COG2877 201 VQQPGGQGG-SSGGRREFVPTLARAAVAVGVAGLFIET-------HPDPDNAKS 246 (279)
T ss_pred eeCCCCCCC-CCCCcchhHHHHHHHHHHhccceEEEec-------cCCcccCCC
Confidence 444455454 34557999999999988764 7999854 477876653
No 19
>KOG3147|consensus
Probab=26.10 E-value=1.2e+02 Score=22.90 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=34.1
Q ss_pred CCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCC
Q psy14617 9 QPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGL 53 (102)
Q Consensus 9 ~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~Gi 53 (102)
..+.+.|-++-.++..-..+.+......++..++++|.|.+|--+
T Consensus 38 ~~g~F~i~lSGGSLi~~L~~~l~~~~~~~i~w~kW~if~~DER~V 82 (252)
T KOG3147|consen 38 KRGRFTLALSGGSLIQVLSKLLESPYQDDIDWSKWHIFFVDERVV 82 (252)
T ss_pred cCCeEEEEEcCCcHHHHHHHHhcccccCCCCccceEEEEEecccc
Confidence 556799999999999888888877433333335799999998654
No 20
>PF03543 Peptidase_C58: Yersinia/Haemophilus virulence surface antigen; InterPro: IPR022767 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C58. Family C58 contains endopeptidases that also act as transamidases, attaching a lipid moiety to the newly exposed N terminus of the substrate. This entry includes protein YopT from Yersinia pestis involved in bacterial pathogenesis and Rhizobium sp. (strain NGR234) nodulation outer protein T (NopT).; GO: 0004197 cysteine-type endopeptidase activity; PDB: 1UKF_A.
Probab=25.86 E-value=31 Score=24.78 Aligned_cols=18 Identities=28% Similarity=0.951 Sum_probs=13.8
Q ss_pred HhcCCCCCceEEecCCcE
Q psy14617 69 QLFNPYYGLFEYSANDTY 86 (102)
Q Consensus 69 el~~p~~glF~~~~~~~~ 86 (102)
.+|||++|.|..+....+
T Consensus 156 ~fFDPN~Ge~~f~~~~~f 173 (204)
T PF03543_consen 156 TFFDPNYGEFSFPSKEDF 173 (204)
T ss_dssp EEEETTTEEEEEETTT--
T ss_pred EEECCCceEEEecCccch
Confidence 689999999998776533
No 21
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=24.71 E-value=67 Score=16.74 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=8.6
Q ss_pred HHHHHHHHHHh
Q psy14617 60 REFFFLLSRQL 70 (102)
Q Consensus 60 RE~f~ll~~el 70 (102)
+|||..+++++
T Consensus 27 ~e~F~~Ls~eL 37 (37)
T PF08858_consen 27 KEWFYELSEEL 37 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhC
Confidence 78888888764
No 22
>PF11175 DUF2961: Protein of unknown function (DUF2961); InterPro: IPR021345 This family of proteins has no known function.
Probab=23.50 E-value=70 Score=23.72 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=34.6
Q ss_pred ccceEEEEecCC--CCCCCCchHHHHHHHHHHhcCCCCCceEEecCCc-EEEEeCCCCC
Q psy14617 40 KCKLYAQFDSED--GLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDT-YTVQISPMSA 95 (102)
Q Consensus 40 ~~~l~V~F~gE~--GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~-~~~~~np~s~ 95 (102)
...|++.+.||+ .|++ +.-+||-.-..+...-+.-++..++++. .+|+|-|...
T Consensus 4 ~~ilr~ywDge~~PsVe~--PlgdFFg~G~g~~~~~~Sl~~~~~~~~~~n~y~pMPF~k 60 (237)
T PF11175_consen 4 DLILRIYWDGEETPSVEA--PLGDFFGNGWGEYAPVNSLPFGVNPDGGFNCYFPMPFRK 60 (237)
T ss_pred HeEEEEEECCCCCceEEe--ehHHhcCCccccCccccceeEEECCCCcEEEEEecccCC
Confidence 346899999987 6764 6666665554444444444566555544 6788888755
No 23
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=23.37 E-value=70 Score=18.25 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=27.3
Q ss_pred ceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecC
Q psy14617 12 DLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSE 50 (102)
Q Consensus 12 ~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE 50 (102)
.+.+.|.+++-+...++.+.....-... ..++..|.|+
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~-~~~~l~fdG~ 49 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPE-ESIRLIFDGK 49 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT--TTEEEEETTE
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCcc-ceEEEEECCE
Confidence 7889999999998888877553222211 3688899885
No 24
>PF15572 Imm26: Immunity protein 26
Probab=21.28 E-value=1.1e+02 Score=19.72 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=26.6
Q ss_pred cccceEEEEecCCCCCCC-CchHHHHHHHHHHhcCCC
Q psy14617 39 AKCKLYAQFDSEDGLDYG-GPSREFFFLLSRQLFNPY 74 (102)
Q Consensus 39 ~~~~l~V~F~gE~GiD~G-Gl~RE~f~ll~~el~~p~ 74 (102)
+.+.+.+.|-.|+--+.| |++++|+..=.+..+-|+
T Consensus 52 kAG~i~~~fP~Ea~~~~~~aiSt~Wli~NW~kwiY~~ 88 (96)
T PF15572_consen 52 KAGLILVKFPKEAESKEGRAISTEWLIENWEKWIYPE 88 (96)
T ss_pred ecceEEEeCCHHHhhcccccccHHHHHHHHHHhhcCC
Confidence 345677888888766655 999999987766666554
No 25
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=21.11 E-value=1.1e+02 Score=22.10 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=23.3
Q ss_pred CchHHHHHHHHHHhcCCCCCceEEecCCcEEEEeCC
Q psy14617 57 GPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISP 92 (102)
Q Consensus 57 Gl~RE~f~ll~~el~~p~~glF~~~~~~~~~~~~np 92 (102)
|.-+||+.-|.+ .+|++-+.+.....-.-+|++|
T Consensus 158 GaC~ewL~KIAe--~np~f~v~mFd~t~c~~vy~~~ 191 (193)
T PF14421_consen 158 GACKEWLRKIAE--ANPDFRVYMFDDTRCRNVYILP 191 (193)
T ss_pred hHHHHHHHHHHH--hCCCeEEEEecCCCcceEEEee
Confidence 788999999998 7888776655443322345554
No 26
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=20.45 E-value=75 Score=19.62 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.9
Q ss_pred ccceEEEEecCCCCCCCCchHHHHH
Q psy14617 40 KCKLYAQFDSEDGLDYGGPSREFFF 64 (102)
Q Consensus 40 ~~~l~V~F~gE~GiD~GGl~RE~f~ 64 (102)
.+.+.++|..|.-+|-..|.||.+.
T Consensus 53 ~~k~~fyy~a~~rvDFR~Lvr~L~~ 77 (88)
T PF04468_consen 53 GSKLTFYYTAESRVDFRELVRDLAR 77 (88)
T ss_pred CCEEEEEEEeCCcCcHHHHHHHHHH
Confidence 3468899999999998666666543
No 27
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=20.33 E-value=1.8e+02 Score=18.22 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCC
Q psy14617 9 QPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDG 52 (102)
Q Consensus 9 ~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~G 52 (102)
......+.|..+--+++..+.++.. ..++ .++.|++.+| |
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdk--f~~~-~~~~iKykDE-G 49 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDK--FGFK-RRLKIKMKDD-G 49 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHH--hCCC-CceEEEEEcC-C
Confidence 3445677888888899988888652 2243 4899999999 5
No 28
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=20.15 E-value=1.5e+02 Score=15.23 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=20.8
Q ss_pred cccccccceEEEEecCCCCCCCCchHHHHHHH
Q psy14617 35 KKDLAKCKLYAQFDSEDGLDYGGPSREFFFLL 66 (102)
Q Consensus 35 ~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll 66 (102)
+.++++ ...|-|.+ .+-+..|+-.||=.++
T Consensus 4 P~nf~H-~~HVg~d~-~~~~f~glp~ew~~~l 33 (36)
T smart00285 4 PTDFKH-IAHVGFDG-QTGEFTGLPTEWESLL 33 (36)
T ss_pred CCCCcE-EEEeeECC-CCCccCCCCHHHHHHh
Confidence 445655 67788776 3445689999997665
Done!