Query psy14617
Match_columns 102
No_of_seqs 121 out of 938
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 16:19:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 100.0 8.3E-29 2.8E-33 191.9 6.6 98 3-101 38-135 (405)
2 3olm_A E3 ubiquitin-protein li 99.9 1.8E-27 6.1E-32 185.5 6.9 94 7-101 69-162 (429)
3 1nd7_A WW domain-containing pr 99.9 4.9E-27 1.7E-31 180.3 6.0 94 7-101 18-111 (374)
4 1zvd_A SMAD ubiquitination reg 99.9 9.6E-27 3.3E-31 179.0 6.9 93 8-101 20-112 (380)
5 2oni_A E3 ubiquitin-protein li 99.9 1.1E-25 3.9E-30 173.6 4.7 93 9-101 39-132 (392)
6 1c4z_A E6AP, ubiquitin-protein 99.9 8.4E-24 2.9E-28 161.6 8.6 85 10-96 3-90 (358)
7 1sy9_B Cyclic-nucleotide-gated 28.6 11 0.00038 17.5 -0.1 8 57-64 15-22 (26)
8 2qkp_A Uncharacterized protein 27.7 55 0.0019 20.7 3.1 36 54-93 12-47 (151)
9 2pst_X Hypothetical protein PA 25.2 62 0.0021 18.9 2.7 24 70-93 6-31 (74)
10 2khr_A Protein MBTH; sideropho 24.1 65 0.0022 18.8 2.7 23 71-93 9-33 (74)
11 3a4r_A Nfatc2-interacting prot 23.8 81 0.0028 17.9 3.1 37 12-50 20-56 (79)
12 2io0_B Small ubiquitin-related 23.7 74 0.0025 18.8 3.0 37 12-50 17-53 (91)
13 3goe_A DNA repair protein RAD6 22.3 93 0.0032 18.6 3.1 42 8-50 17-58 (82)
14 3ke2_A Uncharacterized protein 22.2 1.2E+02 0.0042 19.3 3.9 30 42-71 61-99 (117)
15 2jxx_A Nfatc2-interacting prot 22.0 98 0.0033 18.7 3.3 37 12-50 38-74 (97)
16 2lpd_A Uncharacterized protein 21.8 67 0.0023 19.8 2.5 23 71-93 20-44 (95)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.95 E-value=8.3e-29 Score=191.95 Aligned_cols=98 Identities=36% Similarity=0.682 Sum_probs=87.3
Q ss_pred cccCCCCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEec
Q psy14617 3 FLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSA 82 (102)
Q Consensus 3 ~l~~~~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~ 82 (102)
+++.++.++.+.|+|||++|++||+++++..++.+|++ +|+|+|.||+|+|+||++||||+++++++|+|++|||++++
T Consensus 38 ~~~~~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~-~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~ 116 (405)
T 3h1d_A 38 RLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKN-RLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSP 116 (405)
T ss_dssp HHTTTCCCCEEEEEECGGGHHHHHHHHHTTSCTTGGGS-EEEEEETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECS
T ss_pred hhhcCCCCCceEEEEeCchHHHHHHHHHHccCHHHhhc-ceEEEECCCCCcCCChhHHHHHHHHHHHHhCCcccceeecc
Confidence 45677788899999999999999999999999999975 99999999999999999999999999999999999999998
Q ss_pred CCcEEEEeCCCCCCCCCCC
Q psy14617 83 NDTYTVQISPMSAFVDNYH 101 (102)
Q Consensus 83 ~~~~~~~~np~s~~~~~hl 101 (102)
+++++|+|||.|..+|+||
T Consensus 117 ~~~~~~~~np~s~~~~~~l 135 (405)
T 3h1d_A 117 GDRVTYTINPSSHANPNHL 135 (405)
T ss_dssp SCSSEEEECCC-----CHH
T ss_pred CCceeEeeCCccccChhHH
Confidence 8888999999998889886
No 2
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-27 Score=185.52 Aligned_cols=94 Identities=50% Similarity=0.898 Sum_probs=80.3
Q ss_pred CCCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcE
Q psy14617 7 GTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTY 86 (102)
Q Consensus 7 ~~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~ 86 (102)
...++++.|+|||++|++||++++++.++.+|++ +|+|+|.||+|+|+|||+||||+++++++|+|++|||++++++++
T Consensus 69 ~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~-~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~ 147 (429)
T 3olm_A 69 RILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKK-RLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNY 147 (429)
T ss_dssp SCCSSCEEEEEETTSHHHHHHHHHHHSCHHHHTS-CEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSSSSC
T ss_pred cCCCCceEEEEecchhHHHHHHHHHhcChHhcCc-ceEEEECCCCccCCChhHHHHHHHHHHHHcCccCCCceeeCCCCe
Confidence 3456789999999999999999999999999976 999999999999999999999999999999999999999988888
Q ss_pred EEEeCCCCCCCCCCC
Q psy14617 87 TVQISPMSAFVDNYH 101 (102)
Q Consensus 87 ~~~~np~s~~~~~hl 101 (102)
+++|||.|.+.|+||
T Consensus 148 ~~~~np~s~~~~~~l 162 (429)
T 3olm_A 148 TIQINPNSGINPEHL 162 (429)
T ss_dssp CEEECGGGGGSTTHH
T ss_pred eEeeCCcccCCHHHH
Confidence 999999999989886
No 3
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.93 E-value=4.9e-27 Score=180.25 Aligned_cols=94 Identities=43% Similarity=0.826 Sum_probs=88.0
Q ss_pred CCCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcE
Q psy14617 7 GTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTY 86 (102)
Q Consensus 7 ~~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~ 86 (102)
...++++.|+|+|++|++||+++++..++.+|++ +++|+|.||+|+|+||++||||+++++++|+|++|||++++++++
T Consensus 18 ~~~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~-~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~~~~ 96 (374)
T 1nd7_A 18 NALPSHVKINVSRQTLFEDSFQQIMALKPYDLRR-RLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNY 96 (374)
T ss_dssp TCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGS-EEEEEETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSSSC
T ss_pred cCCCCCeEEEECCCCHHHHHHHHHHhcCHHhccc-eEEEEECCCCCcCCCccHHHHHHHHHHHHcCCccccccccCCCCc
Confidence 3457899999999999999999999999999975 999999999999999999999999999999999999999888888
Q ss_pred EEEeCCCCCCCCCCC
Q psy14617 87 TVQISPMSAFVDNYH 101 (102)
Q Consensus 87 ~~~~np~s~~~~~hl 101 (102)
+++|||.|...|+||
T Consensus 97 ~~~~~p~s~~~~~~l 111 (374)
T 1nd7_A 97 CLQINPASTINPDHL 111 (374)
T ss_dssp CEEECGGGGGSTTHH
T ss_pred eeccCCcccCCHHHH
Confidence 999999999888886
No 4
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.93 E-value=9.6e-27 Score=179.01 Aligned_cols=93 Identities=42% Similarity=0.813 Sum_probs=87.5
Q ss_pred CCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcEE
Q psy14617 8 TQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYT 87 (102)
Q Consensus 8 ~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~~ 87 (102)
..++++.|+|+|++|++||+++++..++.+|++ +++|+|.||+|+|+||++||||+++++++++|++|||.++++++++
T Consensus 20 ~~~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~-~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~ 98 (380)
T 1zvd_A 20 PQAGHCRIEVSREEIFEESYRQVMKMRPKDLWK-RLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYT 98 (380)
T ss_dssp CSSCEEEEEECSTTHHHHHHHHHHTSCGGGGGS-EEEEEETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETTEEEE
T ss_pred CCCCceEEEEccCCHHHHHHHHHHccCHHHhcC-ceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCCeeccCCCCee
Confidence 356789999999999999999999999999975 9999999999999999999999999999999999999999888899
Q ss_pred EEeCCCCCCCCCCC
Q psy14617 88 VQISPMSAFVDNYH 101 (102)
Q Consensus 88 ~~~np~s~~~~~hl 101 (102)
++|||.|..+|+|+
T Consensus 99 ~~~np~s~~~~~~l 112 (380)
T 1zvd_A 99 LQINPDSAVNPEHL 112 (380)
T ss_dssp EEECTTGGGSTTHH
T ss_pred eccCchhhcChHHH
Confidence 99999999888886
No 5
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.91 E-value=1.1e-25 Score=173.63 Aligned_cols=93 Identities=46% Similarity=0.964 Sum_probs=82.2
Q ss_pred CCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcEEE
Q psy14617 9 QPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTV 88 (102)
Q Consensus 9 ~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~~~ 88 (102)
.++++.|+|+|++|++||++++...+..++.+++++|+|.||+|+|+|||+||||+++++|+|+|++|||.+++++++++
T Consensus 39 ~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~ 118 (392)
T 2oni_A 39 IPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTL 118 (392)
T ss_dssp SCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCE
T ss_pred CCCCEEEEEcCCchHHHHHHHHHccCcHHhhCccEEEEECCCccccCCccHHHHHHHHHHHHcCcccCCceecCCCCcee
Confidence 56789999999999999999999886544334599999999999999999999999999999999999999988888899
Q ss_pred EeCCCCCC-CCCCC
Q psy14617 89 QISPMSAF-VDNYH 101 (102)
Q Consensus 89 ~~np~s~~-~~~hl 101 (102)
+|||.|.. .++||
T Consensus 119 ~~np~s~~~~~~~l 132 (392)
T 2oni_A 119 QINPNSGLCNEDHL 132 (392)
T ss_dssp EECTTHHHHCTTHH
T ss_pred ccCCccccccHHHH
Confidence 99999874 57765
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.90 E-value=8.4e-24 Score=161.56 Aligned_cols=85 Identities=38% Similarity=0.713 Sum_probs=76.4
Q ss_pred CCceEEEEcCCchHHHHHHHHH---cCCcccccccceEEEEecCCCCCCCCchHHHHHHHHHHhcCCCCCceEEecCCcE
Q psy14617 10 PRDLSLNIRRDHLLEDAFNKIM---LASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTY 86 (102)
Q Consensus 10 ~~~~~l~V~R~~il~ds~~~l~---~~~~~~l~~~~l~V~F~gE~GiD~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~ 86 (102)
.+.+.++|+|++|++||++++. ..++.+|++ +++|+|.||+|+|+||++||||+++++++|+|++|||.++++++
T Consensus 3 ~~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~-~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~- 80 (358)
T 1c4z_A 3 NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKK-QLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTK- 80 (358)
T ss_dssp CCSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGS-CCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTT-
T ss_pred CCeEEEEEcCCcHHHHHHHHHHHHhccCHHHhcC-ceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCC-
Confidence 5689999999999999999985 456788975 99999999999999999999999999999999999999987655
Q ss_pred EEEeCCCCCC
Q psy14617 87 TVQISPMSAF 96 (102)
Q Consensus 87 ~~~~np~s~~ 96 (102)
.|||||.+..
T Consensus 81 ~~~~np~s~~ 90 (358)
T 1c4z_A 81 LFWFNPSSFE 90 (358)
T ss_dssp EEEECTTCCS
T ss_pred eEeeCCcccc
Confidence 6899999853
No 7
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=28.65 E-value=11 Score=17.47 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=5.7
Q ss_pred CchHHHHH
Q psy14617 57 GPSREFFF 64 (102)
Q Consensus 57 Gl~RE~f~ 64 (102)
|+.|||-.
T Consensus 15 gv~r~wa~ 22 (26)
T 1sy9_B 15 GVLREWAY 22 (26)
T ss_pred HHHHHHHH
Confidence 67888843
No 8
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=27.72 E-value=55 Score=20.66 Aligned_cols=36 Identities=17% Similarity=0.001 Sum_probs=27.3
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCceEEecCCcEEEEeCCC
Q psy14617 54 DYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPM 93 (102)
Q Consensus 54 D~GGl~RE~f~ll~~el~~p~~glF~~~~~~~~~~~~np~ 93 (102)
+.|=++++++..+++.+-+ |++....++.. .++|++
T Consensus 12 ~~g~l~~~~l~~IL~~~~~---gI~~vD~~g~I-~~~N~a 47 (151)
T 2qkp_A 12 GNGYLSVEQANLILNHLPL---EITFVNKDDIF-QYYNDS 47 (151)
T ss_dssp TTEEECHHHHHHHHHHSSS---EEEEEETTSBE-EEECCC
T ss_pred CCcEecHHHHHHHHHhCCC---ceEEEcCCCeE-EEEeCC
Confidence 6677889998888877765 67777766665 468988
No 9
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=25.25 E-value=62 Score=18.93 Aligned_cols=24 Identities=13% Similarity=0.175 Sum_probs=14.1
Q ss_pred hcCCCCCceEE--ecCCcEEEEeCCC
Q psy14617 70 LFNPYYGLFEY--SANDTYTVQISPM 93 (102)
Q Consensus 70 l~~p~~glF~~--~~~~~~~~~~np~ 93 (102)
-||...+.|.. +.+++|++||.-.
T Consensus 6 pfdd~~~~f~VlvN~E~QySLWP~~~ 31 (74)
T 2pst_X 6 VFDRDDIQFQVVVNHEEQYSIWPEYK 31 (74)
T ss_dssp ----CCSCEEEEEETTCCEEEEETTS
T ss_pred CCcCCCCeEEEEEcCCCccccCcCCC
Confidence 35555566655 7778999998653
No 10
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=24.13 E-value=65 Score=18.84 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=15.4
Q ss_pred cCCCCCceEE--ecCCcEEEEeCCC
Q psy14617 71 FNPYYGLFEY--SANDTYTVQISPM 93 (102)
Q Consensus 71 ~~p~~glF~~--~~~~~~~~~~np~ 93 (102)
||...+.|.. +.+++|++||.-.
T Consensus 9 fdd~~~~f~VlvN~E~QySLWP~~~ 33 (74)
T 2khr_A 9 FDDDNGAFFVLVNDEDQHSLWPVFA 33 (74)
T ss_dssp CSCCCSCEEEEEETTCSCEEEETTS
T ss_pred CCCCCCeEEEEEcCCCccccCcCcC
Confidence 4445566655 6778999998643
No 11
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=23.80 E-value=81 Score=17.87 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=26.1
Q ss_pred ceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecC
Q psy14617 12 DLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSE 50 (102)
Q Consensus 12 ~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE 50 (102)
.+.+.|+|..-++..++.+.....-+ ...++..|.|+
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~ 56 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLS--GHKLSFFFDGT 56 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCT--TCCCEEEETTE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCE
Confidence 58899999999888777765432222 23678888885
No 12
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=23.67 E-value=74 Score=18.79 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=27.4
Q ss_pred ceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecC
Q psy14617 12 DLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSE 50 (102)
Q Consensus 12 ~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE 50 (102)
.+.+.|.|..-|+..++.+.....-+. ..++..|.|+
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~--~~~rf~FdG~ 53 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSM--RQIRFRFDGQ 53 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCS--TTEEEEETTE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCc--ccEEEEECCE
Confidence 689999999998888877765433332 4688889885
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=22.34 E-value=93 Score=18.60 Aligned_cols=42 Identities=21% Similarity=0.403 Sum_probs=30.6
Q ss_pred CCCCceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecC
Q psy14617 8 TQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSE 50 (102)
Q Consensus 8 ~~~~~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE 50 (102)
..++.+.+.|.++.=+...+........-++.. .++..|.|+
T Consensus 17 ~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~-~IrllFDGd 58 (82)
T 3goe_A 17 SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHE-RIRLEFEGE 58 (82)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCT-TCEEEETTE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCc-eEEEEEcCc
Confidence 356689999999999988888776544334432 788889885
No 14
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=22.22 E-value=1.2e+02 Score=19.28 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=22.2
Q ss_pred ceEEEEe--cCC---C----CCCCCchHHHHHHHHHHhc
Q psy14617 42 KLYAQFD--SED---G----LDYGGPSREFFFLLSRQLF 71 (102)
Q Consensus 42 ~l~V~F~--gE~---G----iD~GGl~RE~f~ll~~el~ 71 (102)
.+.|.|+ ||. | .|+|.+-|+|+..=.+++.
T Consensus 61 gI~~~FvQ~G~R~n~GyY~I~dWG~idk~Wv~~~~~~i~ 99 (117)
T 3ke2_A 61 GIEVEFVQDGERHNAGYYRIRTWGPISSAWMDTHVDEVK 99 (117)
T ss_dssp TCEEEEECCTTCCSCCEEEEEECTTBCHHHHHHHHHHHH
T ss_pred CeEEEEEeccccCCCccEEEeecCccCHHHHHHHHHHHH
Confidence 6889998 433 3 3889999999877665554
No 15
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=22.01 E-value=98 Score=18.70 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=27.0
Q ss_pred ceEEEEcCCchHHHHHHHHHcCCcccccccceEEEEecC
Q psy14617 12 DLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSE 50 (102)
Q Consensus 12 ~~~l~V~R~~il~ds~~~l~~~~~~~l~~~~l~V~F~gE 50 (102)
.+.+.|+|..-|.-.++.......-+. ..++..|.|+
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~--~~vrF~FDG~ 74 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSG--RKLSFFFDGT 74 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSS--SCCEEEETTE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCc--ccEEEEECCE
Confidence 578999999999888887655433333 3688888885
No 16
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=21.81 E-value=67 Score=19.76 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=15.5
Q ss_pred cCCCCCceEE--ecCCcEEEEeCCC
Q psy14617 71 FNPYYGLFEY--SANDTYTVQISPM 93 (102)
Q Consensus 71 ~~p~~glF~~--~~~~~~~~~~np~ 93 (102)
||.+.+.|.. +.+++|++||.-.
T Consensus 20 FDd~~~~f~VLvN~E~QYSLWP~~~ 44 (95)
T 2lpd_A 20 GSMDDELYFVVRNNEGQYSVWMDGR 44 (95)
T ss_dssp CSSCCCCEEEEECSSCSCEEEETTS
T ss_pred CcCCCCcEEEEEcCCCccccCcCCC
Confidence 5555566655 6678899998653
Done!