RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14617
(102 letters)
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 99.2 bits (248), Expect = 2e-26
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 13 LSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFN 72
L + +RRD +LEDA ++ S DL K L +F E+G+D GG +REFF L+S++LFN
Sbjct: 1 LKITVRRDRILEDALRQLSKVSSSDLKK-VLEVEFVGEEGIDAGGVTREFFTLVSKELFN 59
Query: 73 PYYGLFEYSANDTYTVQISPMS 94
P YGLF Y+ +D+ + +P S
Sbjct: 60 PSYGLFRYTPDDSGLLYPNPSS 81
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 91.8 bits (228), Expect = 3e-23
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSR 60
K L + +RRD + ED++ +IM S DL K L +F E+G+D GG +R
Sbjct: 503 SLKQKAKIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKK-TLEIEFVGEEGIDAGGLTR 561
Query: 61 EFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMS 94
E+ FLLS+++FNP YGLFEY D YT+ I+P+S
Sbjct: 562 EWLFLLSKEMFNPDYGLFEYITEDLYTLPINPLS 595
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 79.6 bits (197), Expect = 3e-19
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 37 DLAKCKLYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAF 96
DL K L +F+ E+GLD GG +REFFFLLS++LFNP YGLF YS ND Y + +P S F
Sbjct: 1 DLKKRVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPND-YLLYPNPRSGF 59
Query: 97 VDNYH 101
+ H
Sbjct: 60 ANEEH 64
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 34.6 bits (80), Expect = 0.003
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 65 LLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE 102
LLS++LFNP YGLF Y ++ + +P S E
Sbjct: 2 LLSKELFNPDYGLFFYVTPNSGLLWPNPGSPESSADEE 39
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 30.0 bits (67), Expect = 0.19
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD--SEDGLDYGGP 58
+ F+KG DL LNI R++L + NKI+ +K++ K K FD +E+ DY
Sbjct: 354 LGFVKGVVDSEDLPLNISRENLQQ---NKILKVIRKNIVK-KCLEMFDEVAENKEDY--- 406
Query: 59 SREFFFLLSRQLFNPYYGLFEYSAN 83
++F+ + N G+ E +AN
Sbjct: 407 -KQFYEQFGK---NIKLGIHEDTAN 427
>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated.
Length = 351
Score = 28.8 bits (65), Expect = 0.37
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 19 RDHLLEDAFNK-IMLASKKDLAKCKLYAQFDSE 50
RDHLL+ + A DLA + A+ SE
Sbjct: 286 RDHLLDRIMAEARRAAEAGDLALAERLARLWSE 318
>gnl|CDD|184304 PRK13754, PRK13754, conjugal transfer fertility inhibition protein
FinO; Provisional.
Length = 186
Score = 28.3 bits (63), Expect = 0.50
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 7 GTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKC 41
G PR L+ IR + LLED + + S K L +
Sbjct: 90 GDTPRLLACGIR-EVLLEDVAQRNIPLSHKKLRRA 123
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 27.8 bits (62), Expect = 0.87
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 3 FLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
F+KG DL LNI R+ L + NKI+ +K+L K
Sbjct: 181 FVKGVVDSEDLPLNISREMLQQ---NKILKVIRKNLVK 215
>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear
distribution) C and similar proteins. Aspergillus
nidulas (An) NUDC is needed for nuclear movement.
AnNUDC is localized at the hyphal cortex, and binds
NUDF at spindle pole bodies (SPBs) and in the cytoplasm
at different stages in the cell cycle. At the SPBs it
is part of the dynein molecular motor/NUDF complex that
regulates microtubule dynamics. Mammalian(m) NUDC
associates both with the dynein complex and also with
an anti-inflammatory enzyme, platelet activating factor
acetylhydrolase I, PAF-AH(I) complex, through binding
mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC
is important for cell proliferation both in normal and
tumor tissues. Its expression is elevated in various
cell types undergoing mitosis or stimulated to
proliferate, with high expression levels observed in
leukemic cells and tumors. For a leukemic cell line,
human NUDC was shown to activate the thrombopoietin
(TPO) receptor (Mpl) by binding to its extracellular
domain, and promoting cell proliferation and
differentiation. This group also includes the human
broadly immunogenic tumor associated antigen, CML66,
which is highly expressed in a variety of solid tumors
and in leukemias. In normal tissues high expression of
CML66 is limited to testis and heart.
Length = 85
Score = 26.4 bits (59), Expect = 1.4
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 4 LKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSED 51
L GT+ +D+ + I HL K+ + + L +LYA+ ++
Sbjct: 16 LPEGTKSKDVKVEITPKHL------KVGVKGGEPLLDGELYAKVKVDE 57
>gnl|CDD|240267 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional.
Length = 390
Score = 27.0 bits (60), Expect = 1.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 8 TQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
TQP L L ++ H++E N +A K D AK
Sbjct: 163 TQPSKLPLGQKKAHVMEIQVNGGSVAEKVDFAK 195
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 26.9 bits (59), Expect = 2.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
M F+KG DL LN+ R+ L + NKI+ A K + +
Sbjct: 414 MSFVKGVVDSDDLPLNVSREQLQQ---NKILKAVSKRIVR 450
>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 26.4 bits (59), Expect = 2.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 17 IRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD 48
++E NKIM KK LA+ +Y FD
Sbjct: 16 KYNSVIVERLINKIMRDGKKSLAEKIVYGAFD 47
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar
branch of the ribosomal protein S7 family (includes
prokaroytic S7 and eukaryotic S5). The eukaryotic and
archaeal branch is described by model TIGR01028
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 154
Score = 26.1 bits (58), Expect = 3.4
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 KGGTQPRDLSLN-IRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD 48
K + R + + + LL N++M KK LA+ +Y F+
Sbjct: 2 KRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFE 46
>gnl|CDD|182256 PRK10126, PRK10126, tyrosine phosphatase; Provisional.
Length = 147
Score = 26.0 bits (57), Expect = 3.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 11 RDLSLNIRRDHLLEDAFNKIMLASKKDLA-----KCKLYAQFDSEDGLDYGGPSREFFFL 65
R +S + R++ L K + ++A K L+ +D+E + P R+
Sbjct: 66 RQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVMLFGHWDNEC--EIPDPYRK---- 119
Query: 66 LSRQLFNPYYGLFEYSA 82
SR+ F Y L E SA
Sbjct: 120 -SREAFEAVYTLLERSA 135
>gnl|CDD|225582 COG3040, Blc, Bacterial lipocalin [Cell envelope biogenesis, outer
membrane].
Length = 174
Score = 25.4 bits (56), Expect = 6.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 56 GGPSREFFFLLSRQ 69
G P RE+ +LLSR
Sbjct: 128 GSPDREYLWLLSRT 141
>gnl|CDD|238748 cd01471, vWA_micronemal_protein, Micronemal proteins: The
Toxoplasma lytic cycle begins when the parasite actively
invades a target cell. In association with invasion, T.
gondii sequentially discharges three sets of secretory
organelles beginning with the micronemes, which contain
adhesive proteins involved in parasite attachment to a
host cell. Deployed as protein complexes, several
micronemal proteins possess vertebrate-derived adhesive
sequences that function in binding receptors. The VWA
domain likely mediates the protein-protein interactions
of these with their interacting partners.
Length = 186
Score = 24.7 bits (54), Expect = 9.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 26 AFNKIMLASKKDLAKCKLYAQ 46
N+ ++ D + C LY Q
Sbjct: 152 EENRSLVGCDPDDSPCPLYLQ 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.415
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,268,376
Number of extensions: 438426
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 23
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)