RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14617
(102 letters)
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 130 bits (329), Expect = 4e-38
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 5 KGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFFF 64
K P + + R+++ E+++ +IM + D+ K +L+ +F+SE GLDYGG +RE+FF
Sbjct: 35 KPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFF 94
Query: 65 LLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYH 101
LLS+++FNPYYGLFEYSA D YT+QI+P S + H
Sbjct: 95 LLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDH 131
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 128 bits (325), Expect = 1e-37
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 2 KFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSRE 61
+ + Q + + R+ + E+++ ++M KDL +L +F E+GLDYGG +RE
Sbjct: 14 ELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDL-WKRLMIKFRGEEGLDYGGVARE 72
Query: 62 FFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE 102
+ +LLS ++ NPYYGLF+YS +D YT+QI+P SA +
Sbjct: 73 WLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLS 113
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 126 bits (320), Expect = 1e-36
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSR 60
++ L G + D+++++RRDH+ ED++ ++ S +++ K +LY F+ E+G D GG R
Sbjct: 36 LERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEM-KNRLYIVFEGEEGQDAGGLLR 94
Query: 61 EFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE 102
E++ ++SR++FNP Y LF S D T I+P S N+
Sbjct: 95 EWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHANPNHLS 136
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 123 bits (311), Expect = 2e-35
Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSR 60
P + +RR ++ EDA+ +IM + +DL K +L +FD E+GLDYGG SR
Sbjct: 63 RSQPALRILPGQCHIKVRRKNIFEDAYQEIMRQTPEDL-KKRLMIKFDGEEGLDYGGVSR 121
Query: 61 EFFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE 102
EFFFLLS ++FNP+Y LFEYSA D YT+QI+P S +
Sbjct: 122 EFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLN 163
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 122 bits (309), Expect = 2e-35
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 2 KFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSRE 61
+ P + +N+ R L ED+F +IM DL + +LY F E+GLDYGG +RE
Sbjct: 13 YLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDL-RRRLYVIFRGEEGLDYGGLARE 71
Query: 62 FFFLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE 102
+FFLLS ++ NP Y LFEY+ + Y +QI+P S ++
Sbjct: 72 WFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLS 112
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 114 bits (287), Expect = 3e-32
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 13 LSLNIRRDHLLEDAFNKIMLASKKDLA--KCKLYAQFDSEDGLDYGGPSREFFFLLSRQL 70
L L +RRDH+++DA ++ + + ++ A K +LY +F+ E G+D GG S+EFF L+ ++
Sbjct: 6 LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEI 65
Query: 71 FNPYYGLFEYSANDTYTVQISPMSAFVDNY 100
FNP G+F Y T +P S +
Sbjct: 66 FNPDIGMFTYDE-STKLFWFNPSSFETEGQ 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.028
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 15/56 (26%)
Query: 33 ASKKDLAKCKLYAQFDSEDGLDYG-GPSREFFFLLSRQLFNPYYG----LFEYSAN 83
A + A+ L A F G G G + ++F L R L+ Y+ L ++SA
Sbjct: 148 AVGEGNAQ--LVAIF----G---GQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAE 193
Score = 29.2 bits (65), Expect = 0.21
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 12/42 (28%)
Query: 21 HLLEDAFNKIMLASKKDLAKCKLYAQ--------FDSEDGLD 54
HLL A + I KDL K + +D+ DG D
Sbjct: 430 HLLVPASDLI----NKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 25.8 bits (56), Expect = 3.5
Identities = 11/91 (12%), Positives = 24/91 (26%), Gaps = 28/91 (30%)
Query: 19 RDHLLEDAFNKIMLASKKDLAKCKLYAQFDSED----GLDYGGPSREFF---------FL 65
+ + + ++ ++ + D K K F + + L
Sbjct: 1680 KGKRIRENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 66 LSRQLFN--------PYYGLF------EYSA 82
+ + F P F EY+A
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.16
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 35 KKDLAK----CKLYAQFDSEDGL 53
K+ L K KLYA DS L
Sbjct: 19 KQALKKLQASLKLYAD-DSAPAL 40
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 26.5 bits (59), Expect = 1.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
+ F++G DL LNI R+ L + +KI+ +K+L K
Sbjct: 92 LNFIRGVVDSEDLPLNISREMLQQ---SKILKVIRKNLVK 128
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 26.5 bits (59), Expect = 1.8
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIM--------LASKKDLAKCKLYAQF 47
+ F+KG DL LN+ R+ L + K++ L K +A K F
Sbjct: 342 LNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADEKYNDTF 396
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 26.5 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
+ F+KG DL LNI R++L + NKI+ +K++ K
Sbjct: 108 LGFVKGVVDSEDLPLNISRENLQQ---NKILKVIRKNIVK 144
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 26.0 bits (58), Expect = 2.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
+ F+KG DL LN+ R+ L + NKIM +K++ K
Sbjct: 92 LSFVKGVVDSEDLPLNLSREMLQQ---NKIMKVIRKNIVK 128
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 26.3 bits (58), Expect = 2.3
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFD-SEDGLDYGGPS 59
+ F+KG DL LN+ R+ L ++ K++ +K++ K + A + +ED +
Sbjct: 362 LSFVKGVVDSEDLPLNLSREMLQQNKIMKVI---RKNIVKKLIEAFNEIAEDSEQF---- 414
Query: 60 REFFFLLSRQLFNPYYGLFEYSAN 83
+F+ S+ + G+ E + N
Sbjct: 415 EKFYSAFSKNIK---LGVHEDTQN 435
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 26.1 bits (58), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
+ F+KG DL LN+ R+ L + NKIM +K++ K
Sbjct: 90 LSFVKGVVDSEDLPLNLSREMLQQ---NKIMKVIRKNIVK 126
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 25.6 bits (57), Expect = 2.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
+ F+KG DL LN+ R+ L + NKIM +K++ K
Sbjct: 90 LSFVKGVVDSEDLPLNLSREMLQQ---NKIMKVIRKNIVK 126
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 25.2 bits (56), Expect = 4.3
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
+ FL+G +L LN+ R+ L + +K++ K +
Sbjct: 94 LTFLRGIVDSENLPLNVGREILQK---SKMLSIINKRIVL 130
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 25.2 bits (56), Expect = 4.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
+ F++G DL LNI R+ L + +KI+ +K++ K
Sbjct: 92 LNFIRGVVDSEDLPLNISREMLQQ---SKILKVIRKNIVK 128
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI,
protein structure initiative; HET: MSE; 1.30A
{Plasmodium vivax} PDB: 2r77_A
Length = 200
Score = 24.9 bits (54), Expect = 5.6
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 43 LYAQFDSEDGLDYGGPSREFFFLLSRQLFNPYYGLFEY 80
L + G G P ++R FN +
Sbjct: 144 LSLVKEENKGNVTGVPLYRGEHYITRVKFNNCQSAYNV 181
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 24.9 bits (55), Expect = 6.1
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 1 MKFLKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAK 40
++F++G DL LN+ R+ L + + + + L K
Sbjct: 90 LRFVRGLIDSSDLPLNVSREILQD---STVTRNLRNALTK 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.415
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,543,731
Number of extensions: 76903
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 31
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)