RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14617
         (102 letters)



>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score = 98.7 bits (245), Expect = 1e-26
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 4   LKGGTQPRDLSLNIRRDHLLEDAFNKIMLASKKDLAKCKLYAQFDSEDGLDYGGPSREFF 63
            +    P  + +N+ R  L ED+F +IM     DL + +LY  F  E+GLDYGG +RE+F
Sbjct: 15  CQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDL-RRRLYVIFRGEEGLDYGGLAREWF 73

Query: 64  FLLSRQLFNPYYGLFEYSANDTYTVQISPMSAFVDNYHE 102
           FLLS ++ NP Y LFEY+  + Y +QI+P S    ++  
Sbjct: 74  FLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLS 112


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 84.8 bits (209), Expect = 1e-21
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 13  LSLNIRRDHLLEDAFNKIMLASKKDLA--KCKLYAQFDSEDGLDYGGPSREFFFLLSRQL 70
           L L +RRDH+++DA  ++ + + ++ A  K +LY +F+ E G+D GG S+EFF L+  ++
Sbjct: 4   LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEI 63

Query: 71  FNPYYGLFEYSANDTYTVQISPMSAFVDNYH 101
           FNP  G+F Y  +                + 
Sbjct: 64  FNPDIGMFTYDESTKLFWFNPSSFETEGQFT 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,738
Number of extensions: 15028
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 9
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)