BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14619
         (344 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
          Length = 123

 Score = 32.0 bits (71), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 19/116 (16%)

Query: 103 NHLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTS 161
           +HLL++    H Q R    +P S + E  QIT T E + ++      +IKS  E FES +
Sbjct: 18  SHLLVK----HSQSR----RPSSWRQE--QITRTQEEALELINGYIQKIKSGEEDFESLA 67

Query: 162 T--TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
           +  +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 68  SQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 123


>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
          Length = 123

 Score = 31.6 bits (70), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 19/116 (16%)

Query: 103 NHLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTS 161
           +HLL++    H Q R    +P S + E  QIT T E + ++      +IKS  E FES +
Sbjct: 18  SHLLVK----HSQSR----RPSSWRQE--QITRTQEEALELINGYIQKIKSGEEDFESLA 67

Query: 162 T--TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
           +  +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 68  SQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 123


>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
          Length = 114

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 19/116 (16%)

Query: 103 NHLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTS 161
           +HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES +
Sbjct: 9   SHLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLA 58

Query: 162 T--TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
           +  +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 59  SQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 114


>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 59  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 108

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 109 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163


>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
          Length = 161

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 57  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 106

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 107 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 161


>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
 pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
          Length = 163

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 59  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 108

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 109 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163


>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
          Length = 162

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 58  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 107

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 108 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 162


>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
           By Group Iv Ww Domains
          Length = 167

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 63  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 112

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 113 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 167


>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 59  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 108

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 109 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163


>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
 pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
           Pin1 By Epigallocatechin-3-Gallate
          Length = 163

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 59  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 108

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 109 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163


>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 59  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 108

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 109 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163


>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
 pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
 pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
          Length = 167

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 63  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 112

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 113 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 167


>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
 pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
          Length = 158

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 54  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 103

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 104 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 158


>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
           Domains By O- Phosphorylated Natural Product Derivatives
          Length = 166

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 62  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 111

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 112 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 166


>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
          Length = 167

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 63  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 112

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 113 QFSDCSSAKARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 167


>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 28.9 bits (63), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL++    H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 59  HLLVK----HSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 108

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +           P  + S  + T E S   FT    HI   +E
Sbjct: 109 QFSDCSSAKARGDLGAFSRGQAQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163


>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 19/115 (16%)

Query: 104 HLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSERS-QITTTECSQIKSNSECFESTST 162
           HLL+     H Q R    +P S + E  +IT T E + ++      +IKS  E FES ++
Sbjct: 59  HLLV----AHSQSR----RPSSWRQE--KITRTKEEALELINGYIQKIKSGEEDFESLAS 108

Query: 163 --TDCSQITCTSECSEI----INTP--ECSKIITTSECSQITFTSECSHITFTSE 209
             +DCS      +        +  P  + S  + T E S   FT    HI   +E
Sbjct: 109 QFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.127    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,827,973
Number of Sequences: 62578
Number of extensions: 256425
Number of successful extensions: 868
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 60
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)