Query psy14619
Match_columns 344
No_of_seqs 13 out of 15
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 16:21:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsf_X RAD23, UV excision repa 66.1 3.2 0.00011 35.8 2.6 14 27-40 26-40 (171)
2 3fbi_B Mediator of RNA polymer 32.4 7.7 0.00026 33.0 -0.6 47 6-57 31-77 (130)
3 1oqy_A HHR23A, UV excision rep 25.8 35 0.0012 31.7 2.6 14 27-40 238-251 (368)
4 2b7e_A PRE-mRNA processing pro 24.3 18 0.00061 26.8 0.3 13 3-15 5-17 (59)
5 2doe_A Transcription elongatio 24.0 21 0.00071 26.9 0.6 49 6-54 22-70 (83)
6 2qsf_X RAD23, UV excision repa 22.6 77 0.0026 27.3 3.9 13 57-69 59-71 (171)
7 1oqy_A HHR23A, UV excision rep 19.8 69 0.0024 29.8 3.2 13 18-30 238-250 (368)
8 2ao6_B NCOA-2, 14-MER fragment 12.9 71 0.0024 20.8 1.0 8 4-11 2-9 (26)
9 1m2z_B Nuclear receptor coacti 10.8 68 0.0023 20.9 0.5 8 4-11 8-15 (26)
10 1rcw_A CT610, CADD; iron, DI-i 10.5 3.9E+02 0.013 21.3 5.0 52 16-67 8-64 (231)
No 1
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=66.12 E-value=3.2 Score=35.80 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=5.8
Q ss_pred HHHH-hHHHHHHhhh
Q psy14619 27 QMLR-NHLLIQMLRN 40 (344)
Q Consensus 27 qmL~-nhqvlQML~N 40 (344)
..|+ +++.||.+|.
T Consensus 26 ~~L~~~~Pqf~qlRq 40 (171)
T 2qsf_X 26 GSIGLTVEDLLSLRQ 40 (171)
T ss_dssp --CCCCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHH
Confidence 3444 5555554443
No 2
>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B
Probab=32.36 E-value=7.7 Score=32.99 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhhhHHHHHHhh
Q psy14619 6 LLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLR 57 (344)
Q Consensus 6 q~LqmL~nHqvLQmL~nHqvlqmL~nhqvlQML~NhqLfQmL~N~qLLQmL~ 57 (344)
-|.|.|+|..+|++|+.+. .|+++..-+.+|+ +|+|.+++-|.+++.
T Consensus 31 EFVQ~LANP~YL~~Llaq~--gy~~d~~FinYLk---YL~YWk~PeYakyl~ 77 (130)
T 3fbi_B 31 EFIQSLANIQYVTYLLTQQ--QIWKSPNFKNYLK---YLEYWCNPPYSQCIV 77 (130)
T ss_dssp HHHHHTTSHHHHHHHHTCS--GGGTSTHHHHHHH---HGGGGGSTTGGGGCS
T ss_pred HHHHHhcCHHHHHHHHHHc--ccccCHHHHHHHH---HHHHhcCCCchhHhc
Confidence 3567777777777763322 2444444444442 335555555555543
No 3
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=25.81 E-value=35 Score=31.75 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=7.0
Q ss_pred HHHHhHHHHHHhhh
Q psy14619 27 QMLRNHLLIQMLRN 40 (344)
Q Consensus 27 qmL~nhqvlQML~N 40 (344)
.+||+++-||.||.
T Consensus 238 ~~Lr~~pqf~~lR~ 251 (368)
T 1oqy_A 238 EFLRDQPQFQNMRQ 251 (368)
T ss_dssp HHHHHSHHHHHHHH
T ss_pred HHHhcChHHHHHHH
Confidence 44555555554443
No 4
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.28 E-value=18 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=8.1
Q ss_pred chhHHHHHHHHHH
Q psy14619 3 RNHLLIQMLRNHL 15 (344)
Q Consensus 3 ~nHq~LqmL~nHq 15 (344)
++.-|++||++|.
T Consensus 5 ae~aF~~lL~~~~ 17 (59)
T 2b7e_A 5 AEKEFITMLKENQ 17 (59)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 3456677777763
No 5
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=24.01 E-value=21 Score=26.87 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhhhHHHHH
Q psy14619 6 LLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQ 54 (344)
Q Consensus 6 q~LqmL~nHqvLQmL~nHqvlqmL~nhqvlQML~NhqLfQmL~N~qLLQ 54 (344)
.|..||+++.+--+-.=..+..++.+|+.+..+...-.=.-|+|.|+-+
T Consensus 22 ~F~~mL~e~~I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~ 70 (83)
T 2doe_A 22 DFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEK 70 (83)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556666665322233345556666666666665555555555555543
No 6
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=22.64 E-value=77 Score=27.26 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=5.6
Q ss_pred hhhHHHHHhhhhH
Q psy14619 57 RNHLLIQMLRNHL 69 (344)
Q Consensus 57 ~NHllLQmL~NHl 69 (344)
.|.+++|+..+|+
T Consensus 59 ~NPqL~qlI~qNq 71 (171)
T 2qsf_X 59 RYPQLREHIMANP 71 (171)
T ss_dssp HCTTHHHHHHHCH
T ss_pred hCHHHHHHHHHCH
Confidence 3444444444443
No 7
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=19.79 E-value=69 Score=29.81 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy14619 18 QMLRNHLLIQMLR 30 (344)
Q Consensus 18 QmL~nHqvlqmL~ 30 (344)
.+||+++-|+.||
T Consensus 238 ~~Lr~~pqf~~lR 250 (368)
T 1oqy_A 238 EFLRDQPQFQNMR 250 (368)
T ss_dssp HHHHHSHHHHHHH
T ss_pred HHHhcChHHHHHH
Confidence 4444554444444
No 8
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=12.88 E-value=71 Score=20.78 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.5
Q ss_pred hhHHHHHH
Q psy14619 4 NHLLIQML 11 (344)
Q Consensus 4 nHq~LqmL 11 (344)
||++|+||
T Consensus 2 ~~~LLRyL 9 (26)
T 2ao6_B 2 ENALLRYL 9 (26)
T ss_pred ccHHHHHH
Confidence 44444444
No 9
>1m2z_B Nuclear receptor coactivator 2; glucocorticoid receptor, dexamethasone, TIF2, dimer interface, hormone binding pocket, charge clamp; HET: BOG DEX; 2.50A {Homo sapiens} PDB: 3gn8_C*
Probab=10.82 E-value=68 Score=20.94 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q psy14619 4 NHLLIQML 11 (344)
Q Consensus 4 nHq~LqmL 11 (344)
+|++|+||
T Consensus 8 ~~~LLryL 15 (26)
T 1m2z_B 8 ENALLRYL 15 (26)
T ss_dssp SCHHHHHH
T ss_pred hHHHHHHH
Confidence 34444444
No 10
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=10.48 E-value=3.9e+02 Score=21.25 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhh-----HHHHHHhhhHHHHHHhhhhHHHHHhhh
Q psy14619 16 LIQMLRNHLLIQMLRNHLLIQMLRN-----HLLIQMLRNHLLIQMLRNHLLIQMLRN 67 (344)
Q Consensus 16 vLQmL~nHqvlqmL~nhqvlQML~N-----hqLfQmL~N~qLLQmL~NHllLQmL~N 67 (344)
..+-|++.-.-+.+.+||.++.+.+ ..+-.|+.+++++....-+.+-..+++
T Consensus 8 f~~~L~~~~~~~~~~~HPf~~~l~~G~L~~e~~~~yl~qdy~yl~~f~~~~a~~~~~ 64 (231)
T 1rcw_A 8 FLDQLDLIIQNKHMLEHTFYVKWSKGELTKEQLQAYAKDYYLHIKAFPKYLSAIHSR 64 (231)
T ss_dssp HHHHHHHHHHHTCGGGSHHHHHHHTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcccCHHHHHHhCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Done!