Query psy14619
Match_columns 344
No_of_seqs 13 out of 15
Neff 1.7
Searched_HMMs 13730
Date Fri Aug 16 16:21:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14619.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14619hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f4mb1 a.189.1.1 (B:275-332) 20.8 36 0.0026 23.4 3.1 12 28-39 4-15 (58)
2 d1rcwa_ a.132.1.4 (A:) Hypothe 10.4 2E+02 0.015 20.0 5.0 7 23-29 18-24 (213)
3 d2b7ea1 a.159.2.1 (A:4-59) Pre 10.1 1E+02 0.0073 20.8 2.9 41 3-43 2-53 (56)
4 d1rcwa_ a.132.1.4 (A:) Hypothe 9.6 2.1E+02 0.015 20.0 4.8 8 31-38 17-24 (213)
5 d1w36b3 c.52.1.24 (B:899-1174) 8.6 1.4E+02 0.01 23.7 3.8 29 87-118 200-228 (276)
6 d3bqoa1 a.146.1.1 (A:62-265) T 6.7 2.3E+02 0.017 23.3 4.3 22 66-87 162-183 (204)
7 d1mija_ a.4.1.1 (A:) Homeo-pro 5.3 2.5E+02 0.018 22.3 3.7 8 48-55 52-59 (152)
8 d2o35a1 a.293.1.1 (A:2-80) Hyp 5.2 1.4E+02 0.0099 21.8 1.8 18 104-121 13-30 (79)
9 d1srka_ g.37.1.1 (A:) Zinc fin 5.2 1.1E+02 0.008 18.5 1.1 12 109-120 22-33 (35)
10 d1otva_ a.132.1.4 (A:) Coenzym 4.9 3E+02 0.022 21.4 3.9 28 3-31 7-34 (254)
No 1
>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.82 E-value=36 Score=23.39 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=5.2
Q ss_pred HHHhHHHHHHhh
Q psy14619 28 MLRNHLLIQMLR 39 (344)
Q Consensus 28 mL~nhqvlQML~ 39 (344)
+||+++-|+.+|
T Consensus 4 ~Lr~~PqFq~lR 15 (58)
T d2f4mb1 4 FLRNQPQFQQMR 15 (58)
T ss_dssp GGTTCHHHHHHH
T ss_pred HHhcChHHHHHH
Confidence 344444444444
No 2
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]}
Probab=10.36 E-value=2e+02 Score=20.04 Aligned_cols=7 Identities=14% Similarity=0.116 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy14619 23 HLLIQML 29 (344)
Q Consensus 23 HqvlqmL 29 (344)
|+.++.|
T Consensus 18 HPf~~~l 24 (213)
T d1rcwa_ 18 HTFYVKW 24 (213)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 3333333
No 3
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.10 E-value=1e+02 Score=20.83 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHH---------HHHH-HHHHHHHHHHHhHH-HHHHhhhHHH
Q psy14619 3 RNHLLIQMLRNHL---------LIQM-LRNHLLIQMLRNHL-LIQMLRNHLL 43 (344)
Q Consensus 3 ~nHq~LqmL~nHq---------vLQm-L~nHqvlqmL~nhq-vlQML~NhqL 43 (344)
++..|..||+++. .+.- ..+|+...+|..++ +=..++|.|+
T Consensus 2 a~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~ 53 (56)
T d2b7ea1 2 AEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 53 (56)
T ss_dssp HHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHh
Confidence 3456777887764 3442 24556655565443 3444444443
No 4
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]}
Probab=9.65 E-value=2.1e+02 Score=19.99 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=3.2
Q ss_pred hHHHHHHh
Q psy14619 31 NHLLIQML 38 (344)
Q Consensus 31 nhqvlQML 38 (344)
|||.++.+
T Consensus 17 ~HPf~~~l 24 (213)
T d1rcwa_ 17 EHTFYVKW 24 (213)
T ss_dssp GSHHHHHH
T ss_pred cCHHHHHH
Confidence 34444433
No 5
>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.58 E-value=1.4e+02 Score=23.66 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=20.0
Q ss_pred HHHHHhhhhHHHHHhhhHHHHHHhhhhhhhhh
Q psy14619 87 LLIQMLRNHHLIRMLRNHLLIRMLRNHLQIRT 118 (344)
Q Consensus 87 llLQmLsNHl~LQmLsNHLlLQmLsNHl~~~~ 118 (344)
+.-.|+.+||.+|| ++|-.+|..+|+.|-
T Consensus 200 l~~~m~~~~Y~lQ~---~lY~~AL~R~L~~r~ 228 (276)
T d1w36b3 200 MAAAMQAHRYDLQY---QLYTLALHRYLRHRI 228 (276)
T ss_dssp HHHHHHHTTTHHHH---HHHHHHHHHHHHHHS
T ss_pred HHHHHHHCcCHHHH---HHHHHHHHHHHHHhc
Confidence 34456677777776 477778888887774
No 6
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.65 E-value=2.3e+02 Score=23.30 Aligned_cols=22 Identities=9% Similarity=0.248 Sum_probs=10.5
Q ss_pred hhhHHHHHhhhHHHHHHhhHHH
Q psy14619 66 RNHLLIQMLRNHLLIQMLRNHL 87 (344)
Q Consensus 66 ~NHllLQmL~NHllLQmL~Nhl 87 (344)
++|++||.+.=....|+..-++
T Consensus 162 ~~H~~lqnFSy~~~~~ki~~fv 183 (204)
T d3bqoa1 162 TFHSFFQHFSYNHMMEKIKSYV 183 (204)
T ss_dssp TTCHHHHHSCHHHHHHHHHHHH
T ss_pred CCcHHHHhcCHHHHHHHHHHHH
Confidence 3455555555444444444433
No 7
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.34 E-value=2.5e+02 Score=22.27 Aligned_cols=8 Identities=50% Similarity=0.688 Sum_probs=3.7
Q ss_pred hhHHHHHH
Q psy14619 48 RNHLLIQM 55 (344)
Q Consensus 48 ~N~qLLQm 55 (344)
|+-+|+||
T Consensus 52 REFyYIQM 59 (152)
T d1mija_ 52 REFYYIQM 59 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 8
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=5.23 E-value=1.4e+02 Score=21.75 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=14.8
Q ss_pred HHHHHHhhhhhhhhhcCC
Q psy14619 104 HLLIRMLRNHLQIRTNAQ 121 (344)
Q Consensus 104 HLlLQmLsNHl~~~~~~~ 121 (344)
--.|+-|-+||+-|+..|
T Consensus 13 AaaFrrL~~HL~~r~dVQ 30 (79)
T d2o35a1 13 AAVFRRLLEHLRERSDVQ 30 (79)
T ss_dssp HHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhCccch
Confidence 346889999999998876
No 9
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.18 E-value=1.1e+02 Score=18.48 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=9.8
Q ss_pred HhhhhhhhhhcC
Q psy14619 109 MLRNHLQIRTNA 120 (344)
Q Consensus 109 mLsNHl~~~~~~ 120 (344)
.|..|++++||.
T Consensus 22 ~L~~H~r~Ht~~ 33 (35)
T d1srka_ 22 NCARHLKVHTDT 33 (35)
T ss_dssp HHHHHHGGGTSC
T ss_pred HHHHHccccCCc
Confidence 477899999885
No 10
>d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC {Klebsiella pneumoniae [TaxId: 573]}
Probab=4.90 E-value=3e+02 Score=21.41 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14619 3 RNHLLIQMLRNHLLIQMLRNHLLIQMLRN 31 (344)
Q Consensus 3 ~nHq~LqmL~nHqvLQmL~nHqvlqmL~n 31 (344)
....|.+-|++.. =.|+-+|+.++++.+
T Consensus 7 ~~~~F~~~L~~~~-~~~h~~HPF~~~l~~ 34 (254)
T d1otva_ 7 SPQAFEEALRAKG-DFYHIHHPYHIAMHN 34 (254)
T ss_dssp CHHHHHHHHHHGG-GGSGGGSHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HhhcCCChHHHHHhC
Confidence 3455666666542 244445666655554
Done!