RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14619
(344 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 6e-04
Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 42/249 (16%)
Query: 48 RNHLLIQMLRNHLLIQMLRNH--LLIQ-ML---RNHLLIQMLRNHLLIQMLRNH----HL 97
R ++ LR L LR +LI +L + + + + ++ + + +L
Sbjct: 133 RLQPYLK-LRQAL--LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 98 IRMLRNHLLIRMLRN-HLQIRTNAQKPPSPQNECSQITFTSERSQITTTECSQIKSN-SE 155
++ ML+ QI N S+ S+ S I++
Sbjct: 190 KNCNSPETVLEMLQKLLYQID---------PNWTSR----SDHSSNIKLRIHSIQAELRR 236
Query: 156 CFESTSTTDCSQI---TCTSECSEIINTPECSKIITTSECSQITFTSECSHITFTSECFQ 212
+S +C + ++ N C ++TT F S + + +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 213 TTFTSECSQITFTECSQIKSNSECFE--STSTTDCSQITCTSECSEIINTPE------CS 264
T T + + + + E +T+ S I + + T + C
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCD 353
Query: 265 KIITTSECS 273
K+ T E S
Sbjct: 354 KLTTIIESS 362
Score = 30.6 bits (68), Expect = 0.93
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 38/153 (24%)
Query: 2 LRNHLLIQMLRNHLLIQMLRNHLLIQMLRN--------HLLI--QML---RNHLLIQML- 47
LR H + LR L + N LL+ L N + ++L R + L
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 48 ---RNHLLIQMLRNHL----LIQMLRNHLLI--QMLRNHLLIQMLRNH-LLIQM----LR 93
H+ + L + +L +L Q L ++L + + + +R
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRRLSIIAESIR 338
Query: 94 NHHLIRMLRN--HLLIRMLRNHLQIRTNAQKPP 124
+ + N H+ L ++ N +P
Sbjct: 339 DG--LATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Score = 28.3 bits (62), Expect = 4.6
Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 24/132 (18%)
Query: 112 NHLQIRTNAQKPPSPQNECSQITFTSERSQITTTECSQIKSNSECFESTSTTDCSQITCT 171
+H+ T Q + I E + + +C ++ + I
Sbjct: 5 HHMDFETGEH-----QYQYKDILSVFEDAFVDNFDCKDVQ------DMPK-----SILSK 48
Query: 172 SECSEIINTP---ECSKIITTSECSQITFTSECSHITFTSECFQTTFTSECSQITFTECS 228
E II + + + + S+ + F E + + S I TE
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ----KFVEEVLRINYKFLMSPIK-TEQR 103
Query: 229 QIKSNSECFEST 240
Q + +
Sbjct: 104 QPSMMTRMYIEQ 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.46
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 41 HLLIQMLRNHL--LIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN---HLLIQMLRNH 95
L+ + L ++ L++ + Q+L L L H L L
Sbjct: 59 ELVGKFL-GYVSSLVEPSKVGQFDQVLNLCL------TEFENCYLEGNDIHALAAKLLQE 111
Query: 96 HLIRMLRNHLLIRMLRNHLQIRTNAQKPPSPQNE 129
+ +++ LI+ N++ R A++P ++
Sbjct: 112 NDTTLVKTKELIK---NYITARIMAKRPFDKKSN 142
Score = 30.4 bits (68), Expect = 1.2
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 99 RMLRNHLLIRMLRNHLQIRTNAQKPPSPQNEC-SQITFTSERSQITTTECSQ 149
+ +R + + + + +K NE + TF SE+ ++ T+ +Q
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 30.4 bits (67), Expect = 1.0
Identities = 16/200 (8%), Positives = 39/200 (19%)
Query: 118 TNAQKPPSPQNECSQITFTSERSQITTTECSQIKSNSECFESTSTTDCSQITCTSECSEI 177
+ + C + + + + + + T T +
Sbjct: 294 NGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDP 353
Query: 178 INTPECSKIITTSECSQITFTSECSHITFTSECFQTTFTSECSQITFTECSQIKSNSECF 237
N E + + + +I +
Sbjct: 354 YNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLIL 413
Query: 238 ESTSTTDCSQITCTSECSEIINTPECSKIITTSECSQITFTSERSQITTTECSQIKSNSE 297
+ T + + I + S + + T S +Q ++ N
Sbjct: 414 KQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCT 473
Query: 298 CFESTSTTDCSQITCTSECS 317
CS C
Sbjct: 474 AEGMVCNHLCSSDGCWGPGP 493
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding
protein, structural genomics, joint for structural
genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Length = 222
Score = 29.6 bits (67), Expect = 1.1
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 77 HLLIQMLRNHLLIQMLRN-HHLIRMLRNHLLIRM---LRNHLQI 116
L++M N L ++ H I ++ L L ++ +I
Sbjct: 146 RTLLEMGDNRELRRLFPTIHMPIVHAQHRLASLRQMRLDDYRRI 189
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2,
protein structure initiative, midwest center for STR
genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Length = 237
Score = 29.6 bits (67), Expect = 1.2
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 5 HLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHL-LIQMLRNH---L 60
L N L++++ L + R L + L +H L+++
Sbjct: 152 LSLYAKTHNKRLMRLVEE-GLNEEER-FLRFNLSSMGLGKLSQDDHWQLLRLAEQKAVEP 209
Query: 61 LIQMLRNHLLIQMLRNHLLIQMLRNH 86
++ L+ HL + + Q L++
Sbjct: 210 CVEALQYHLNRGV---QAVTQYLQSQ 232
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase,
soybean lipoxygenase-B, fatty acid biosynthesis, lipid
synthesis; 2.4A {Glycine max}
Length = 853
Score = 28.7 bits (63), Expect = 3.5
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 4 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 58
+ ++ L H +++ + H + ++L H M N L + L N
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVN 562
Score = 28.7 bits (63), Expect = 3.5
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 13 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 67
+ ++ L H +++ + H + ++L H M N L + L N
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVN 562
Score = 28.7 bits (63), Expect = 3.5
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 22 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 76
+ ++ L H +++ + H + ++L H M N L + L N
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVN 562
Score = 28.7 bits (63), Expect = 3.5
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 31 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 85
+ ++ L H +++ + H + ++L H M N L + L N
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVN 562
Score = 28.7 bits (63), Expect = 3.5
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 40 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 94
+ ++ L H +++ + H + ++L H M N L + L N
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVN 562
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids,
oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1
b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A
1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A*
1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
Length = 839
Score = 28.3 bits (62), Expect = 4.6
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 1 MLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 58
+ L+ L H ++ + H + ++L H M N L Q L N
Sbjct: 491 SCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLIN 548
Score = 28.3 bits (62), Expect = 4.6
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 10 MLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 67
+ L+ L H ++ + H + ++L H M N L Q L N
Sbjct: 491 SCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLIN 548
Score = 28.3 bits (62), Expect = 4.6
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 19 MLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 76
+ L+ L H ++ + H + ++L H M N L Q L N
Sbjct: 491 SCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLIN 548
Score = 28.3 bits (62), Expect = 4.6
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 28 MLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 85
+ L+ L H ++ + H + ++L H M N L Q L N
Sbjct: 491 SCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLIN 548
Score = 28.3 bits (62), Expect = 4.6
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 37 MLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 94
+ L+ L H ++ + H + ++L H M N L Q L N
Sbjct: 491 SCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLIN 548
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 27.4 bits (60), Expect = 9.5
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 224 FTECSQIKSNSECFESTSTTDCSQITCTSECSEIINTPECSKIITTSECSQITFTSERSQ 283
+ + E + ++ + C P + ++F+ E
Sbjct: 344 IVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIE--- 400
Query: 284 ITTTECSQIKSNSECFESTSTTDCSQITCTSECS 317
C Q K S + D + T +C
Sbjct: 401 AKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCD 434
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A
{Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Length = 691
Score = 27.2 bits (59), Expect = 9.8
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 4 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 56
+ + +LR HL+ ++ + Q+ H + ++L H+ + N + L
Sbjct: 380 HQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQL 432
Score = 27.2 bits (59), Expect = 9.8
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 13 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 65
+ + +LR HL+ ++ + Q+ H + ++L H+ + N + L
Sbjct: 380 HQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQL 432
Score = 27.2 bits (59), Expect = 9.8
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 22 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 74
+ + +LR HL+ ++ + Q+ H + ++L H+ + N + L
Sbjct: 380 HQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQL 432
Score = 27.2 bits (59), Expect = 9.8
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 31 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 83
+ + +LR HL+ ++ + Q+ H + ++L H+ + N + L
Sbjct: 380 HQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQL 432
Score = 27.2 bits (59), Expect = 9.8
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 40 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 92
+ + +LR HL+ ++ + Q+ H + ++L H+ + N + L
Sbjct: 380 HQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQL 432
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.127 0.374
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,565,156
Number of extensions: 256297
Number of successful extensions: 913
Number of sequences better than 10.0: 1
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 133
Length of query: 344
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 250
Effective length of database: 4,077,219
Effective search space: 1019304750
Effective search space used: 1019304750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.5 bits)