RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14619
(344 letters)
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 27.6 bits (60), Expect = 2.2
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 1/117 (0%)
Query: 23 HLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQM 82
L++ML H + N + H + + H L
Sbjct: 19 RALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSP 78
Query: 83 LRNHLLIQMLRNHHLIRMLRNHLLIRMLRNHLQIRTNAQKPPSPQNECSQITFTSER 139
+ M L+ +LR+ R+L ++ Q+ N + P + R
Sbjct: 79 KVPERIHSMNPTIRLLLILRDPSE-RVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGR 134
Score = 26.1 bits (56), Expect = 6.2
Identities = 12/83 (14%), Positives = 22/83 (26%)
Query: 5 HLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQM 64
L++ML H + N + H + + H L
Sbjct: 19 RALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSP 78
Query: 65 LRNHLLIQMLRNHLLIQMLRNHL 87
+ M L+ +LR+
Sbjct: 79 KVPERIHSMNPTIRLLLILRDPS 101
Score = 25.7 bits (55), Expect = 8.2
Identities = 12/82 (14%), Positives = 22/82 (26%)
Query: 14 HLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQM 73
L++ML H + N + H + + H L
Sbjct: 19 RALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSP 78
Query: 74 LRNHLLIQMLRNHLLIQMLRNH 95
+ M L+ +LR+
Sbjct: 79 KVPERIHSMNPTIRLLLILRDP 100
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 27.3 bits (60), Expect = 3.0
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 4 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQ 63
+ + L +HLL R HL+ ++ + + H + +++ HL + N
Sbjct: 239 SDFQVHELNSHLL----RGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARN 294
Query: 64 MLRN 67
L +
Sbjct: 295 GLVS 298
Score = 27.3 bits (60), Expect = 3.0
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 13 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQ 72
+ + L +HLL R HL+ ++ + + H + +++ HL + N
Sbjct: 239 SDFQVHELNSHLL----RGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARN 294
Query: 73 MLRN 76
L +
Sbjct: 295 GLVS 298
Score = 27.3 bits (60), Expect = 3.0
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 22 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQ 81
+ + L +HLL R HL+ ++ + + H + +++ HL + N
Sbjct: 239 SDFQVHELNSHLL----RGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARN 294
Query: 82 MLRN 85
L +
Sbjct: 295 GLVS 298
Score = 27.3 bits (60), Expect = 3.0
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 31 NHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQ 90
+ + L +HLL R HL+ ++ + + H + +++ HL + N
Sbjct: 239 SDFQVHELNSHLL----RGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARN 294
Query: 91 MLRN 94
L +
Sbjct: 295 GLVS 298
Score = 26.5 bits (58), Expect = 5.0
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 1 MLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRN 49
+LR HL+ ++ + + H + +++ HL + N L +
Sbjct: 250 LLRGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVS 298
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 26.8 bits (59), Expect = 4.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 5 HLLI-QMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 56
H L+ L H ++ + H + ++L H M N L Q L
Sbjct: 345 HQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSL 397
Score = 26.8 bits (59), Expect = 4.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 14 HLLI-QMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 65
H L+ L H ++ + H + ++L H M N L Q L
Sbjct: 345 HQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSL 397
Score = 26.8 bits (59), Expect = 4.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 23 HLLI-QMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 74
H L+ L H ++ + H + ++L H M N L Q L
Sbjct: 345 HQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSL 397
Score = 26.8 bits (59), Expect = 4.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 32 HLLI-QMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 83
H L+ L H ++ + H + ++L H M N L Q L
Sbjct: 345 HQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSL 397
Score = 26.8 bits (59), Expect = 4.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 41 HLLI-QMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQMLRNHLLIQML 92
H L+ L H ++ + H + ++L H M N L Q L
Sbjct: 345 HQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSL 397
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.127 0.374
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,145,264
Number of extensions: 54746
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 68
Length of query: 344
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,226,816
Effective search space: 316518528
Effective search space used: 316518528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.5 bits)