BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14621
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 230 bits (587), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 111/160 (69%), Positives = 131/160 (81%)
Query: 86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
V+A +LKGL+P VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct: 179 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAG 238
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
TEVVKAKAGAGSATLSMAYAGARF FSL+ + G+ V+EC++VKS TE +YFSTP+ L
Sbjct: 239 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLL 298
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
GK GIEKNLG+GK+S FE++++ A+PELK +I KGE+FV
Sbjct: 299 GKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 338
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 43/64 (67%)
Query: 32 NNAKVMVAGASGGIGXXXXXXXXXXXXVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG 91
NNAKV V GASGGIG V L+LYDI HTPGVAADLSHIE+KA V+ + G
Sbjct: 27 NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLG 86
Query: 92 ADQL 95
+QL
Sbjct: 87 PEQL 90
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/152 (70%), Positives = 126/152 (82%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
+LKGL+P V+VPVIGGHAG TIIPLISQ TP V FP DQL LTGRIQEAGTEVVKAKA
Sbjct: 159 ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
GAGSATLSMAYAGARF FSL+ + G+ V+EC++VKS T+ YFSTP+ LGK GIEKN
Sbjct: 219 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
LG+GK+S FE++++ A+PELK +I KGEEFV
Sbjct: 279 LGIGKISPFEEKMIAEAIPELKASIKKGEEFV 310
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 41/62 (66%)
Query: 34 AKVMVAGASGGIGXXXXXXXXXXXXVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGAD 93
AKV V GASGGIG V L+LYDI HTPGVAADLSHIE++A V+ + G +
Sbjct: 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPE 60
Query: 94 QL 95
QL
Sbjct: 61 QL 62
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
+LKG P +V VPVIGGH+G+TI+PL+SQ P VSF + ++ LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
G GSATLSM A ARF SL++ L+GE V+ECAYV+ D A +FS P+ LGKNG+E+
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
+G LS FE+ ++ + LKK+IA GEEFV K
Sbjct: 279 KSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 35 KVMVAGASGGIGXXXXXXXXXXXXV-DHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGA 92
KV V GA+GGIG LSLYDI TPGVA DLSHI + ++ F+G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 93 DQLKGLNPTDV 103
D L DV
Sbjct: 62 DATPALEGADV 72
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
+LKG P +V VPVIGGH+G+TI+PL+SQ P VSF + ++ LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
G GSATLSM A ARF SL++ L+GE V+ECAYV+ D A +FS P+ LGKNG+E+
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
+G LS FE+ ++ + LKK+IA G+EFV K
Sbjct: 279 KSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 35 KVMVAGASGGIGXXXXXXXXXXXXV-DHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGA 92
KV V GA+GGIG LSLYDI TPGVA DLSHI + ++ F+G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 93 DQLKGLNPTDV 103
D L DV
Sbjct: 62 DATPALEGADV 72
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
+LKG P +V VPVIGGH+G+TI+PL+SQ P VSF + ++ LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
G GSATLSM A ARF SL++ L+GE V+ECAYV+ D A +FS P+ LGKNG+E+
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
+G LS FE+ ++ + LKK+IA G+EFV K
Sbjct: 279 KSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 35 KVMVAGASGGIGXXXXXXXXXXXXV-DHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGA 92
KV V GA+GGIG LSLYDI TPGVA DLSHI + ++ F+G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 93 DQLKGLNPTDV 103
D L DV
Sbjct: 62 DATPALEGADV 72
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 117/160 (73%)
Query: 86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
V+A ++ GL+P DV+VPV+GGHAG+TI+PL+SQ P SF +++ LT RIQ G
Sbjct: 159 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGG 218
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
TEVV+AKAGAGSATLSMAYA +FA + ++GL+G++ VIECA+V S VTE +F++ V L
Sbjct: 219 TEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRL 278
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
G+NGIE+ LG L+++E+ ++ A EL +I KG F+
Sbjct: 279 GRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFI 318
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 35 KVMVAGASGGIGXXXXXXXXXXXXVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQ 94
KV + GA+GGIG V L LYD+V+ PGV AD+SH+++ A V+ F G Q
Sbjct: 10 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQ 69
Query: 95 LK 96
L+
Sbjct: 70 LE 71
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 117/160 (73%)
Query: 86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
V+A ++ GL+P DV+VPV+GGHAG+TI+PL+SQ P SF +++ LT RIQ G
Sbjct: 195 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGG 254
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
TEVV+AKAGAGSATLSMAYA +FA + ++GL+G++ VIECA+V S VTE +F++ V L
Sbjct: 255 TEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRL 314
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
G+NGIE+ LG L+++E+ ++ A EL +I KG F+
Sbjct: 315 GRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFI 354
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 35 KVMVAGASGGIGXXXXXXXXXXXXVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQ 94
KV + GA+GGIG V L LYD+V+ PGV AD+SH+++ A V+ F G Q
Sbjct: 46 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQ 105
Query: 95 LK 96
L+
Sbjct: 106 LE 107
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
+LKG +P +V VPVIGGH+G+TI+PL+SQ V F D+++ ALT RIQ AGTEVV+AKA
Sbjct: 163 ELKGQDPGEVRVPVIGGHSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKA 221
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
G GSATLS A RF +L++ L+GE VIE AYV+ + AS+F+ PV LGK G+E+
Sbjct: 222 GGGSATLSXGQAACRFGLALVKALQGE-EVIEYAYVEGNGEHASFFAQPVKLGKEGVEEI 280
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
L G+LSDFEK + + L +I G +FV
Sbjct: 281 LPYGELSDFEKAALDGXLETLNSDIQIGVDFV 312
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 32 NNAKVMVAGASGGIGXXXXXXXXXXXXV-DHLSLYDIVH-TPGVAADLSHIESKAHVQAF 89
N KV V GA+GGIG L+LYDI TPGVAADLSHI + ++ +
Sbjct: 2 NAXKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGY 61
Query: 90 NGADQLKGLNPTDV 103
G D L DV
Sbjct: 62 AGEDPTPALEGADV 75
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG-TEVVKAKAGA 155
G+ P+DV+ V+GGH G +IPL S T D ++ G+I + E++K A
Sbjct: 173 GVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQ--GKITHSQINEIIKKTAFG 229
Query: 156 GSATLSMAYAGARFAFSLIQG-------LKGESNVIECA-YVKSDVTEASYF-STPVHLG 206
G + + G+ F LK +V+ C+ Y+ + F PV +G
Sbjct: 230 GGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNLFVGVPVVIG 289
Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELK 235
KNGIE ++ + LSD EK L +V ++
Sbjct: 290 KNGIE-DVVIVNLSDDEKSLFSKSVESIQ 317
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 16/151 (10%)
Query: 98 LNPTDVNVPVIGGHAGITIIPLISQATP-----SVSFPDDQLKALTGRIQEAGTEVVKAK 152
L+ D+ V+GGH G ++PL+ + P ++L+A+ R ++ G E+V
Sbjct: 170 LSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GL 227
Query: 153 AGAGSATLSMAYAGARFAFSLIQG-LKGESNVIEC-AYVKSDVTEAS-YFSTPVHLGKNG 209
G GSA YA A + + LK + V+ AY++ + + Y PV LG NG
Sbjct: 228 LGNGSAY----YAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDLYLGVPVILGGNG 283
Query: 210 IEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
IEK + L L+D EKE + +V E +N+ K
Sbjct: 284 IEKIIELELLAD-EKEALDRSV-ESVRNVMK 312
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPD---DQLKALTGRIQEAGTEVVKAKAGAGSATLSMA 163
++G H G +P+ S+ + P+ D+ + L G +QE+ +V++ K +
Sbjct: 171 ILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERKG-------ATE 222
Query: 164 YAGARFAFSLIQGLKGESNVIECAYVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLS 220
+ AR +++ + ++ + A VK + E + F PV LG NG+E+ + L
Sbjct: 223 WGPARGVAHMVEAILHDTGRVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLD 281
Query: 221 DFEKELVKAAVPELKKNIAK 240
D+E++L+ A +L K
Sbjct: 282 DYEQDLMADAAEKLSDQYDK 301
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPD---DQLKALTGRIQEAGTEVVKAKAGAGSATLSMA 163
++G H G +P+ S+ + P+ D+ + L G +QE+ +V++ K +
Sbjct: 172 ILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERKG-------ATE 223
Query: 164 YAGARFAFSLIQGLKGESNVIECAYVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLS 220
+ AR +++ + ++ + A VK + E + F PV LG NG+E+ + L
Sbjct: 224 WGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLD 282
Query: 221 DFEKELVKAAVPELKKNIAK 240
D+E++L+ A +L K
Sbjct: 283 DYEQDLMADAAEKLSDQYDK 302
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPD---DQLKALTGRIQEAGTEVVKAKAGAGSATLSMA 163
++G H G +P+ S+ + + P+ D+ + L G +QE+ +V++ K +
Sbjct: 172 ILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKG-------ATE 223
Query: 164 YAGARFAFSLIQGLKGESNVIECAYVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLS 220
+ AR +++ + ++ + A VK + E + F PV LG NG+E+ + L
Sbjct: 224 WGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLD 282
Query: 221 DFEKELVKAAVPELKKNIAK 240
D+E++L+ A +L K
Sbjct: 283 DYEQDLMADAAEKLSDQYDK 302
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPD---DQLKALTGRIQEAGTEVVKAKAGAGSATLSMA 163
++G H G +P+ S+ + + P+ D+ + L G +QE+ +V++ K +
Sbjct: 171 ILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKG-------ATE 222
Query: 164 YAGARFAFSLIQGLKGESNVIECAYVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLS 220
+ AR +++ + ++ + A VK + E + F PV LG NG+E+ + L
Sbjct: 223 WGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLD 281
Query: 221 DFEKELVKAAVPELKKNIAK 240
D+E++L+ A +L K
Sbjct: 282 DYEQDLMADAAEKLSDQYDK 301
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPD---DQLKALTGRIQEAGTEVVKAKAGAGSATLSMA 163
++G H G +P+ S+ + P+ D+ + L G +QE+ +V++ K +
Sbjct: 171 ILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERKG-------ATE 222
Query: 164 YAGARFAFSLIQGLKGESNVIECAYVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLS 220
+ AR +++ + ++ + A VK + E + F PV LG NG+E+ + L
Sbjct: 223 WGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLD 281
Query: 221 DFEKELVKAAVPELKKNIAK 240
D+E++L+ A +L K
Sbjct: 282 DYEQDLMADAAEKLSDQYDK 301
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 100 PTDVNVPVIGGHAG--------ITI--IPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
P DVN ++G H IT+ IPL + + D +L+A+ R E+V
Sbjct: 170 PRDVNAHIVGAHGNKMVLLKRYITVGGIPL-QEFINNKLISDAELEAIFDRTVNTALEIV 228
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEASYFSTPVHLG 206
A S ++ A A A S ++ LK S ++E Y SD+ + TPV LG
Sbjct: 229 NLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLG 281
Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
NG+E+ + L +L+ EK A+ E K+
Sbjct: 282 ANGVEQVIEL-QLNSEEKAKFDEAIAETKR 310
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 100 PTDVNVPVIGGHAG--------ITI--IPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
P DVN ++G H IT+ IPL + + D +L+A+ R E+V
Sbjct: 171 PRDVNAHIVGAHGNKMVLLKRYITVGGIPL-QEFINNKLISDAELEAIFDRTVNTALEIV 229
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEASYFSTPVHLG 206
A S ++ A A A S ++ LK S ++E Y SD+ + TPV LG
Sbjct: 230 NLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLG 282
Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
NG+E+ + L +L+ EK A+ E K+
Sbjct: 283 ANGVEQVIEL-QLNSEEKAKFDEAIAETKR 311
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 100 PTDVNVPVIGGHAG--------ITI--IPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
P DVN ++G H IT+ IPL + + D +L+A+ R E+V
Sbjct: 171 PRDVNAHIVGAHGNKMVLLKRYITVGGIPL-QEFINNKLISDAELEAIFDRTVNTALEIV 229
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEASYFSTPVHLG 206
A S ++ A A A S ++ LK S ++E Y SD+ + TPV LG
Sbjct: 230 NLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLG 282
Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
NG+E+ + L +L+ EK A+ E K+
Sbjct: 283 ANGVEQVIEL-QLNSEEKAKFDEAIAETKR 311
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 100 PTDVNVPVIGGHAG--------ITI--IPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
P DVN ++G H IT+ IPL + + D +L+A+ R E+V
Sbjct: 170 PRDVNAHIVGAHGNKMVLLKRYITVGGIPL-QEFINNKLISDAELEAIFDRTVNTALEIV 228
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEASYFSTPVHLG 206
A S ++ A A A S ++ LK S ++E Y SD+ + TPV LG
Sbjct: 229 NLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLG 281
Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
NG+E+ + L +L+ EK A+ E K+
Sbjct: 282 ANGVEQVIEL-QLNSEEKAKFDEAIAETKR 310
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 100 PTDVNVPVIGGHAG--------ITI--IPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
P DVN ++G H IT+ IPL + + D +L+A+ R E+V
Sbjct: 171 PRDVNAHIVGAHGNKMVLLKRYITVGGIPL-QEFINNKLISDAELEAIFDRTVNTALEIV 229
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEASYFSTPVHLG 206
A S ++ A A A S ++ LK S ++E Y SD+ + TPV LG
Sbjct: 230 NLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLG 282
Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
NG+E+ + L +L+ EK A+ E K+
Sbjct: 283 ANGVEQVIEL-QLNSEEKAKFDEAIAETKR 311
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQATPSVSF-----PD-------DQLKALTGRIQEA 144
G++P++ + VIG H G + +P+ S + F PD + K++ + ++
Sbjct: 179 GIHPSNCHGWVIGEH-GDSSVPVWSGVNVAGVFLQGLNPDMGTDKDKEDWKSVHKMVVDS 237
Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVH 204
EV+K K G + ++ + A S+++ L+ V V E + S P
Sbjct: 238 AYEVIKLK---GYTSWAIGMSAADLCQSILKNLRKCHPVSTLVKGMHGVNEEVFLSVPCI 294
Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAA 230
LG +G+ + + SD EK+LVK+A
Sbjct: 295 LGNSGLTDVVHMTLKSDEEKQLVKSA 320
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQATP-----SVSFPDDQLKALTGRIQEAGTEVVKA 151
G++ D+N V+GGH G ++P++ T S P + + L R + G E+V+
Sbjct: 160 GVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE- 217
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAY-VKSDV-TEASYFSTPVHLGKNG 209
GSA + A + S++ K V+ CA ++ + ++ PV LG+NG
Sbjct: 218 HLKQGSAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNG 274
Query: 210 IEK 212
+E+
Sbjct: 275 VEQ 277
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQATP-----SVSFPDDQLKALTGRIQEAGTEVVKA 151
G++ D+N V+GGH G ++P++ T S P + + L R + G E+V+
Sbjct: 160 GVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE- 217
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAY-VKSDV-TEASYFSTPVHLGKNG 209
GSA + A + S++ K V+ CA ++ + ++ PV LG+NG
Sbjct: 218 HLKQGSAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNG 274
Query: 210 IEK 212
+E+
Sbjct: 275 VEQ 277
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 24/144 (16%)
Query: 102 DVNVPVIGGHA---GITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSA 158
D PV HA G+TI + +A P + +D+L + +++A E++K K G+
Sbjct: 183 DTEFPV-WSHANIGGVTIAEWV-KAHPEIK--EDKLVKMFEDVRDAAYEIIKLK---GAT 235
Query: 159 TLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHLGKNGIEK 212
+A A AR + ++ L E+ V+ + Y +D+ Y TP + +NGI+
Sbjct: 236 FYGIATALARISKAI---LNDENAVLPLSVYMDGQYGLNDI----YIGTPAVINRNGIQN 288
Query: 213 NLGLGKLSDFEKELVKAAVPELKK 236
L + L+D E+E ++ + +LKK
Sbjct: 289 ILEI-PLTDHEEESMQKSASQLKK 311
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 102 DVNVPVIGGH--AGITIIPLISQATPSVSFPDD--QLKALTGRIQEAGTEVVKAKAGAGS 157
D +VPV G AG+++ L P + D Q K + ++ E+ EV+K K G
Sbjct: 194 DSSVPVWSGMNVAGVSLKTL----HPDLGTDKDKEQWKEVHKQVVESAYEVIKLK---GY 246
Query: 158 ATLSMAYAGARFAFSLIQGLKGE---SNVIECAY-VKSDVTEASYFSTPVHLGKNGIEKN 213
+ ++ + A A S+++ L+ S +I+ Y +K DV + S P LG+NGI
Sbjct: 247 TSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDV----FLSVPCILGQNGISDL 302
Query: 214 LGLGKLSDFEKELVKAA 230
+ + S+ E L K+A
Sbjct: 303 VKVTLTSEEEARLKKSA 319
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 102 DVNVPVIGGH--AGITIIPLISQATPSVSFPDD--QLKALTGRIQEAGTEVVKAKAGAGS 157
D +VPV G AG+++ L P + D Q K + ++ E+ EV+K K G
Sbjct: 194 DSSVPVWSGMNVAGVSLKTL----HPDLGTDKDKEQWKEVHKQVVESAYEVIKLK---GY 246
Query: 158 ATLSMAYAGARFAFSLIQGLKGE---SNVIECAY-VKSDVTEASYFSTPVHLGKNGIEKN 213
+ ++ + A A S+++ L+ S +I+ Y +K DV + S P LG+NGI
Sbjct: 247 TSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDV----FLSVPCILGQNGISDL 302
Query: 214 LGLGKLSDFEKELVKAA 230
+ + S+ E L K+A
Sbjct: 303 VKVTLTSEEEARLKKSA 319
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 24/144 (16%)
Query: 102 DVNVPVIGGHA---GITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSA 158
D PV HA G+TI + +A P + +D+L + +++A E++K K G+
Sbjct: 182 DTEFPV-WSHANIGGVTIAEWV-KAHPEIK--EDKLVKMFEDVRDAAYEIIKLK---GAT 234
Query: 159 TLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHLGKNGIEK 212
+A A AR + ++ L E+ V+ + Y +D+ Y TP + +NGI+
Sbjct: 235 FYGIATALARISKAI---LNDENAVLPLSVYMDGQYGINDL----YIGTPAVINRNGIQN 287
Query: 213 NLGLGKLSDFEKELVKAAVPELKK 236
L + L+D E+E ++ + +LKK
Sbjct: 288 ILEI-PLTDHEEESMQKSASQLKK 310
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQATPS-VSFPD----DQLKALTGRIQEAGTEVVKA 151
G++ DV V+GGH G ++P++ T + + D +++ L R + G E+V
Sbjct: 160 GVSMQDVTACVLGGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN- 217
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDV---TEASYFSTPVHLGKN 208
GSA S A + S++ K V+ CA V D + ++ PV LGKN
Sbjct: 218 HLKQGSAFYSPATSVVEMVESIVLDRK---RVLTCA-VSLDGQYGIDGTFVGVPVKLGKN 273
Query: 209 GIE 211
G+E
Sbjct: 274 GVE 276
>pdb|1Z0C|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
D508a Mutant
Length = 207
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
VIG AGI ++P+I++ TPS+S + ++ A TGR+QE E V
Sbjct: 20 VIGESAGI-VLPIIAEVTPSMSKSEGRVIA-TGRLQEIAREAV 60
>pdb|1Z0E|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
Length = 205
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
VIG AGI ++P+I++ TPS+S + ++ A TGR+QE E V
Sbjct: 18 VIGESAGI-VLPIIAEVTPSMSKSEGRVIA-TGRLQEIAREAV 58
>pdb|1Z0B|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
E506a Mutant
Length = 207
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
VIG AGI ++P+I++ TPS+S + ++ A TGR+QE E V
Sbjct: 20 VIGESAGI-VLPIIAEVTPSMSKSEGRVIA-TGRLQEIAREAV 60
>pdb|1Z0W|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain At
1.2a Resolution
Length = 207
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 107 VIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
VIG AGI ++P+I++ TPS+S + ++ A TGR+QE E V
Sbjct: 20 VIGESAGI-VLPIIAEVTPSMSKSEGRVIA-TGRLQEIAREAV 60
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 22/150 (14%)
Query: 100 PTDVNVPVIGGHAG--------ITI--IPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
P DVN ++G H IT+ IPL + + D +L A+ R E+V
Sbjct: 171 PRDVNAHIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDQELDAIFDRTINTALEIV 229
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEASYFSTPVHLG 206
A S ++ A A A S I+ L+ S ++E Y D+ + TP+ +G
Sbjct: 230 NLHA---SPYVAPAAAIIEMAESYIRDLRKVLICSTLLEGQYGHKDI----FAGTPLVIG 282
Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
NG+E+ + L +L+ EK+ AV E +
Sbjct: 283 GNGVEQVIEL-QLNADEKKKFDEAVAETSR 311
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 100 PTDVNVPVIGGHAG--------ITI--IPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
P DVN ++G H IT+ IPL + + D +L+A+ R E+V
Sbjct: 171 PRDVNAHIVGAHGNKMVLLKRYITVGGIPL-QEFINNKLISDAELEAIFDRTVNTALEIV 229
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNG 209
A A + A ++ + S ++E Y SD+ + TPV LG NG
Sbjct: 230 NLHAAPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANG 285
Query: 210 IEKNLGLGKLSDFEKELVKAAVPELKK 236
+E+ + L +L+ EK A+ E K+
Sbjct: 286 VEQVIEL-QLNSEEKAKFDEAIAETKR 311
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 102 DVNVPVIGGH--AGITIIPLISQATPSVSFPDD--QLKALTGRIQEAGTEVVKAKAGAGS 157
D +VPV G AG+++ L P + D Q K + ++ ++ EV+K K G
Sbjct: 194 DSSVPVWSGMNVAGVSLKTL----HPELGTDADKEQWKQVHKQVVDSAYEVIKLK---GY 246
Query: 158 ATLSMAYAGARFAFSLIQGLKGE---SNVIECAY-VKSDVTEASYFSTPVHLGKNGIEKN 213
T ++ + A A S+++ L+ S +++ Y +K DV + S P LG+NGI
Sbjct: 247 TTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDV----FLSVPCVLGQNGISDV 302
Query: 214 LGLGKLSDFEKELVKAA 230
+ + S+ E L K+A
Sbjct: 303 VKVTLTSEEEAHLKKSA 319
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 102 DVNVPVIGGH--AGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSAT 159
D +VPV G AG+++ L Q +Q K + ++ ++ EV+K K G +
Sbjct: 195 DSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKLK---GYTS 249
Query: 160 LSMAYAGARFAFSLIQGLKGE---SNVIECAY-VKSDVTEASYFSTPVHLGKNGIEKNLG 215
++ + A A S+++ L+ S +I+ Y +K DV + S P LG+NGI +
Sbjct: 250 WAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDV----FLSVPCILGQNGISDVVK 305
Query: 216 LGKLSDFEKELVKAA 230
+ D E L K+A
Sbjct: 306 VTLTPDEEARLKKSA 320
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 102 DVNVPVIGGH--AGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSAT 159
D +VPV G AG+++ L Q +Q K + ++ ++ EV+K K G +
Sbjct: 194 DSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKLK---GYTS 248
Query: 160 LSMAYAGARFAFSLIQGLKGE---SNVIECAY-VKSDVTEASYFSTPVHLGKNGIEKNLG 215
++ + A A S+++ L+ S +I+ Y +K DV + S P LG+NGI +
Sbjct: 249 WAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDV----FLSVPCILGQNGISDVVK 304
Query: 216 LGKLSDFEKELVKAA 230
+ D E L K+A
Sbjct: 305 VTLTPDEEARLKKSA 319
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 24/144 (16%)
Query: 102 DVNVPVIGGHA---GITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSA 158
D PV HA G+TI + +A P + +D+L + ++ E++K K G+
Sbjct: 183 DTEFPV-WSHANIGGVTIAEWV-KAHPEIK--EDKLVKMFEDVRNKAYEIIKLK---GAT 235
Query: 159 TLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHLGKNGIEK 212
+A A AR + ++ L E+ V+ + Y +D+ Y TP + +NGI+
Sbjct: 236 FYGIATALARISKAI---LNDENAVLPLSVYMDGQYGLNDI----YIGTPAVINRNGIQN 288
Query: 213 NLGLGKLSDFEKELVKAAVPELKK 236
L + L+D E+E ++ + +LKK
Sbjct: 289 ILEI-PLTDHEEESMQKSASQLKK 311
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF------PDDQLKALTGRIQE 143
Q G+N +DV+ VIGGH G ++P S + P SF +Q+ + +
Sbjct: 160 QHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRI 218
Query: 144 AGTEVV-KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDV--TEASYFS 200
A EV K G + A A+ LK + V+ C+ S+ + Y
Sbjct: 219 AWKEVADNLKTGTAYFAPAAAAVKMAEAY-----LKDKKAVVPCSAFCSNHYGVKGIYMG 273
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPEL 234
P +GKNG+E L L L+ E++L+ ++ E+
Sbjct: 274 VPTIIGKNGVEDILEL-DLTPLEQKLLGESINEV 306
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF------PDDQLKALTGRIQE 143
Q G+N +DV+ VIGGH G ++P S + P SF +Q+ + +
Sbjct: 160 QHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRI 218
Query: 144 AGTEVV-KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDV--TEASYFS 200
A EV K G + A A+ LK + V+ C+ S+ + Y
Sbjct: 219 AWKEVADNLKTGTAYFAPAAAAVKMAEAY-----LKDKKAVVPCSAFCSNHYGVKGIYMG 273
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPEL 234
P +GKNG+E L L L+ E++L+ ++ E+
Sbjct: 274 VPTIIGKNGVEDILEL-DLTPLEQKLLGESINEV 306
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
G++ DV ++GGH G ++PL +T P F D+L + R ++ G E+V
Sbjct: 161 GVSVQDVQAMLMGGH-GDEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL 219
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
GSA + A A A+ ++ LK + V+ A Y +D+ YF PV L
Sbjct: 220 -LKTGSAYYAPAAATAQMVEAV---LKDKKRVMPVAAYLTGQYGLNDI----YFGVPVIL 271
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238
G G+EK L L L++ E L+ A+ ++ +
Sbjct: 272 GAGGVEKILEL-PLNEEEMALLNASAKAVRATL 303
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
G++ DV ++GGH G ++PL +T P F D+L + R ++ G E+V
Sbjct: 161 GVSVKDVQAMLMGGH-GDEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL 219
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
GSA + A A A+ ++ LK + V+ A Y +D+ YF PV L
Sbjct: 220 -LKTGSAYYAPAAATAQMVEAV---LKDKKRVMPVAAYLTGQYGLNDI----YFGVPVIL 271
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238
G G+EK L L L++ E L+ A+ ++ +
Sbjct: 272 GAGGVEKILEL-PLNEEEMALLNASAKAVRATL 303
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 21/145 (14%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
G++ DV ++GGH G ++PL +T P F D+L + R ++ G E+V
Sbjct: 161 GVSVEDVQAMLMGGH-GDEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL 219
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
GSA + A A A+ ++ LK + V+ A Y +D+ YF PV L
Sbjct: 220 -LKTGSAYYAPAAATAQMVEAV---LKDKKRVMPVAAYLTGQYGLNDI----YFGVPVIL 271
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAA 230
G G+EK L L L++ E L+ A+
Sbjct: 272 GAGGVEKILEL-PLNEEEMALLNAS 295
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 21/153 (13%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPL-----ISQATPSVSFPDDQLKALTGRIQEAGTEVVKA 151
G++ DV ++GGH G ++PL IS S D+L + R ++ G E+V
Sbjct: 161 GVSVEDVQAMLMGGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL 219
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
GSA + A A A+ ++ LK + V+ A Y +D+ YF PV L
Sbjct: 220 -LKTGSAYYAPAAATAQMVEAV---LKDKKRVMPVAAYLTGQYGLNDI----YFGVPVIL 271
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238
G G+EK L L L++ E L+ A+ ++ +
Sbjct: 272 GAGGVEKILEL-PLNEEEMALLNASAKAVRATL 303
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 67 IVHTPGVAAD-LSHIESKAHVQAFNGADQLKGLNPTDVNVPVI 108
++ P D + HIE + FNG ++ + PT++N P+I
Sbjct: 107 VIKEPDNPLDKIIHIEESGFIHKFNGEIIIRLIAPTEINEPLI 149
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 132 DQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAY 188
+ KA+ + ++ EV+K K G + ++ + A A S+++ L+ S +I+ Y
Sbjct: 225 EHWKAVHKEVVDSAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLY 281
Query: 189 VKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAA 230
+ E + S P LG+NGI + + + E L K+A
Sbjct: 282 ---GIKENVFLSVPCILGQNGISDVVKVTLTPEEEAHLKKSA 320
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 94 QLKGLNPTDVNVPVIGGH----------AGITIIPLISQATPSVSFPDDQLKALTGRIQE 143
Q G +P V+V VIG H A I IPL + L+ + +
Sbjct: 155 QHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKR 214
Query: 144 AGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDV--TEASYFST 201
A E+++ K G+ ++A A A S+ E V+ + D + S
Sbjct: 215 AAYEIIERK---GATHYAIALAVADIVESI---FFDEKRVLTLSVYLEDYLGVKDLCISV 268
Query: 202 PVHLGKNGIEK 212
PV LGK+G+E+
Sbjct: 269 PVTLGKHGVER 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,416,378
Number of Sequences: 62578
Number of extensions: 249163
Number of successful extensions: 565
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 64
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)