Query psy14621
Match_columns 248
No_of_seqs 174 out of 1130
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:25:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 1.1E-50 2.3E-55 368.8 21.1 211 34-245 1-310 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 1.5E-50 3.3E-55 368.2 21.8 213 35-247 1-312 (312)
3 COG0039 Mdh Malate/lactate deh 100.0 2E-50 4.3E-55 365.2 18.9 205 34-246 1-312 (313)
4 PTZ00325 malate dehydrogenase; 100.0 4.7E-49 1E-53 359.6 23.7 213 30-247 5-319 (321)
5 PLN00106 malate dehydrogenase 100.0 4.6E-48 1E-52 353.3 22.1 208 32-239 17-322 (323)
6 cd05290 LDH_3 A subgroup of L- 100.0 3.4E-48 7.3E-53 352.4 18.3 195 35-238 1-306 (307)
7 PLN02602 lactate dehydrogenase 100.0 3.3E-47 7.1E-52 351.1 20.8 223 6-241 12-348 (350)
8 KOG1495|consensus 100.0 3E-47 6.5E-52 333.4 16.4 200 32-240 19-329 (332)
9 TIGR01771 L-LDH-NAD L-lactate 100.0 9.4E-47 2E-51 341.8 17.7 190 38-236 1-299 (299)
10 cd05293 LDH_1 A subgroup of L- 100.0 2.2E-46 4.8E-51 341.2 19.8 199 32-239 2-311 (312)
11 PRK05086 malate dehydrogenase; 100.0 8.3E-46 1.8E-50 337.5 23.1 212 34-247 1-312 (312)
12 PRK00066 ldh L-lactate dehydro 100.0 5E-46 1.1E-50 339.3 21.5 202 31-241 4-313 (315)
13 TIGR01759 MalateDH-SF1 malate 100.0 7.1E-46 1.5E-50 339.1 18.8 203 31-241 1-323 (323)
14 PTZ00117 malate dehydrogenase; 100.0 4.8E-45 1E-49 333.4 21.0 205 32-244 4-317 (319)
15 PLN00112 malate dehydrogenase 100.0 3.3E-45 7.1E-50 345.4 19.1 211 30-246 97-425 (444)
16 PRK05442 malate dehydrogenase; 100.0 4E-45 8.6E-50 334.6 18.7 204 32-244 3-325 (326)
17 PTZ00082 L-lactate dehydrogena 100.0 6.5E-45 1.4E-49 332.7 20.1 201 32-240 5-319 (321)
18 KOG1494|consensus 100.0 2.3E-44 5.1E-49 316.6 20.3 226 22-247 17-341 (345)
19 TIGR01763 MalateDH_bact malate 100.0 2.4E-44 5.2E-49 326.9 19.4 200 33-240 1-304 (305)
20 cd05292 LDH_2 A subgroup of L- 100.0 4.3E-44 9.4E-49 325.6 20.8 198 34-240 1-307 (308)
21 TIGR01757 Malate-DH_plant mala 100.0 2.5E-44 5.5E-49 334.8 19.5 211 29-245 40-368 (387)
22 cd01338 MDH_choloroplast_like 100.0 9.6E-44 2.1E-48 325.1 19.7 202 33-242 2-321 (322)
23 cd05291 HicDH_like L-2-hydroxy 100.0 2.5E-43 5.3E-48 320.1 20.3 197 34-239 1-305 (306)
24 cd00300 LDH_like L-lactate deh 100.0 2.1E-43 4.5E-48 320.0 18.5 194 36-238 1-299 (300)
25 cd00704 MDH Malate dehydrogena 100.0 2.7E-43 5.8E-48 322.3 18.2 200 35-242 2-323 (323)
26 cd01336 MDH_cytoplasmic_cytoso 100.0 5.3E-43 1.1E-47 320.6 17.7 203 33-242 2-325 (325)
27 TIGR01758 MDH_euk_cyt malate d 100.0 2.7E-42 5.8E-47 315.8 17.6 203 35-242 1-323 (324)
28 cd01339 LDH-like_MDH L-lactate 100.0 6.1E-41 1.3E-45 303.5 18.8 195 36-238 1-299 (300)
29 cd05294 LDH-like_MDH_nadp A la 100.0 1.6E-40 3.5E-45 302.3 18.9 199 34-240 1-308 (309)
30 PRK06223 malate dehydrogenase; 100.0 1E-39 2.2E-44 295.8 19.5 201 33-241 2-306 (307)
31 cd05295 MDH_like Malate dehydr 100.0 1.7E-38 3.6E-43 300.0 18.4 201 31-242 121-451 (452)
32 PLN00135 malate dehydrogenase 100.0 6.8E-37 1.5E-41 278.3 15.9 147 94-245 147-308 (309)
33 PF02866 Ldh_1_C: lactate/mala 100.0 7.9E-37 1.7E-41 256.5 12.4 145 94-245 14-174 (174)
34 TIGR01756 LDH_protist lactate 100.0 1.6E-35 3.4E-40 269.8 16.9 146 94-245 149-312 (313)
35 cd00650 LDH_MDH_like NAD-depen 100.0 8.3E-31 1.8E-35 233.1 18.6 161 36-238 1-262 (263)
36 KOG1496|consensus 100.0 6E-28 1.3E-32 209.3 13.5 209 32-246 3-331 (332)
37 PF00056 Ldh_1_N: lactate/mala 99.4 3.9E-13 8.4E-18 109.5 4.0 58 34-91 1-62 (141)
38 cd05298 GH4_GlvA_pagL_like Gly 98.9 2E-07 4.4E-12 89.0 19.0 65 162-230 315-383 (437)
39 PRK15076 alpha-galactosidase; 98.6 2.6E-06 5.5E-11 81.4 16.2 63 163-229 307-373 (431)
40 cd05297 GH4_alpha_glucosidase_ 98.5 9.7E-06 2.1E-10 77.2 18.3 63 164-230 311-377 (423)
41 cd05197 GH4_glycoside_hydrolas 98.5 8.3E-06 1.8E-10 77.8 17.2 62 163-228 313-378 (425)
42 cd05296 GH4_P_beta_glucosidase 98.0 0.0002 4.4E-09 68.2 14.2 62 163-228 302-367 (419)
43 KOG1494|consensus 97.2 0.00012 2.5E-09 66.0 1.2 29 2-30 33-61 (345)
44 PF02737 3HCDH_N: 3-hydroxyacy 96.2 0.005 1.1E-07 51.9 3.7 32 35-69 1-32 (180)
45 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.0061 1.3E-07 51.7 4.0 33 34-69 1-33 (185)
46 PF01118 Semialdhyde_dh: Semia 95.9 0.013 2.8E-07 45.9 4.6 45 35-79 1-45 (121)
47 PF00899 ThiF: ThiF family; I 95.8 0.0092 2E-07 47.5 3.3 35 33-69 2-36 (135)
48 PRK05808 3-hydroxybutyryl-CoA 95.6 0.014 2.9E-07 52.3 4.2 34 33-69 3-36 (282)
49 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.017 3.7E-07 47.4 4.1 32 35-69 1-32 (157)
50 PRK07819 3-hydroxybutyryl-CoA 95.5 0.022 4.7E-07 51.5 4.9 34 33-69 5-38 (286)
51 PRK08293 3-hydroxybutyryl-CoA 95.3 0.022 4.9E-07 51.1 4.5 33 34-69 4-36 (287)
52 COG0569 TrkA K+ transport syst 95.3 0.021 4.5E-07 49.9 4.1 71 34-110 1-76 (225)
53 PRK07530 3-hydroxybutyryl-CoA 95.3 0.023 4.9E-07 51.2 4.4 34 33-69 4-37 (292)
54 PRK12549 shikimate 5-dehydroge 95.2 0.026 5.6E-07 51.0 4.6 47 32-80 126-174 (284)
55 PRK12409 D-amino acid dehydrog 95.2 0.028 6E-07 52.6 4.7 33 34-69 2-34 (410)
56 KOG1429|consensus 95.1 0.032 7E-07 50.8 4.7 51 28-81 22-72 (350)
57 PRK06035 3-hydroxyacyl-CoA deh 95.0 0.03 6.5E-07 50.4 4.4 33 34-69 4-36 (291)
58 COG0665 DadA Glycine/D-amino a 95.0 0.034 7.4E-07 51.1 4.8 35 32-69 3-37 (387)
59 TIGR02354 thiF_fam2 thiamine b 95.0 0.032 7E-07 47.9 4.3 35 33-69 21-55 (200)
60 COG1748 LYS9 Saccharopine dehy 95.0 0.033 7.2E-07 52.6 4.7 35 33-69 1-35 (389)
61 PLN02572 UDP-sulfoquinovose sy 95.0 0.036 7.8E-07 53.1 5.0 36 30-67 44-79 (442)
62 PLN02166 dTDP-glucose 4,6-dehy 94.9 0.038 8.2E-07 52.9 5.0 35 32-68 119-153 (436)
63 PRK00711 D-amino acid dehydrog 94.9 0.035 7.6E-07 51.8 4.6 33 34-69 1-33 (416)
64 cd01483 E1_enzyme_family Super 94.8 0.039 8.4E-07 44.2 4.1 33 35-69 1-33 (143)
65 PF03446 NAD_binding_2: NAD bi 94.8 0.043 9.3E-07 45.2 4.5 34 33-69 1-34 (163)
66 PRK11064 wecC UDP-N-acetyl-D-m 94.8 0.038 8.2E-07 52.6 4.6 35 32-69 2-36 (415)
67 PF10727 Rossmann-like: Rossma 94.8 0.032 6.8E-07 44.7 3.5 32 31-65 8-39 (127)
68 PRK06129 3-hydroxyacyl-CoA deh 94.7 0.037 8E-07 50.3 4.3 33 34-69 3-35 (308)
69 TIGR01915 npdG NADPH-dependent 94.7 0.049 1.1E-06 47.1 4.7 34 34-69 1-34 (219)
70 PRK07236 hypothetical protein; 94.7 0.046 1E-06 50.8 4.9 37 30-69 3-39 (386)
71 PLN02545 3-hydroxybutyryl-CoA 94.7 0.043 9.3E-07 49.4 4.4 33 34-69 5-37 (295)
72 PF00070 Pyr_redox: Pyridine n 94.6 0.07 1.5E-06 38.4 4.7 32 35-69 1-32 (80)
73 PRK15181 Vi polysaccharide bio 94.6 0.052 1.1E-06 49.8 5.0 35 32-68 14-48 (348)
74 PRK14619 NAD(P)H-dependent gly 94.6 0.053 1.2E-06 49.3 5.0 35 32-69 3-37 (308)
75 PRK06522 2-dehydropantoate 2-r 94.6 0.045 9.7E-07 48.9 4.4 33 34-69 1-33 (304)
76 PRK06153 hypothetical protein; 94.6 0.04 8.7E-07 52.0 4.2 35 33-69 176-210 (393)
77 PRK06130 3-hydroxybutyryl-CoA 94.6 0.049 1.1E-06 49.3 4.6 33 34-69 5-37 (311)
78 PLN02353 probable UDP-glucose 94.6 0.047 1E-06 53.0 4.7 36 33-69 1-36 (473)
79 cd01487 E1_ThiF_like E1_ThiF_l 94.5 0.051 1.1E-06 45.6 4.2 33 35-69 1-33 (174)
80 PRK08644 thiamine biosynthesis 94.5 0.052 1.1E-06 47.0 4.4 35 33-69 28-62 (212)
81 PRK09260 3-hydroxybutyryl-CoA 94.4 0.043 9.3E-07 49.3 3.9 33 34-69 2-34 (288)
82 PLN02427 UDP-apiose/xylose syn 94.4 0.062 1.3E-06 49.9 4.9 36 32-68 13-48 (386)
83 PRK00094 gpsA NAD(P)H-dependen 94.3 0.053 1.2E-06 49.0 4.3 34 33-69 1-34 (325)
84 PRK06249 2-dehydropantoate 2-r 94.3 0.07 1.5E-06 48.5 5.0 36 31-69 3-38 (313)
85 PLN02206 UDP-glucuronate decar 94.3 0.056 1.2E-06 51.8 4.6 35 32-68 118-152 (442)
86 PF03807 F420_oxidored: NADP o 94.2 0.068 1.5E-06 39.6 4.0 34 35-69 1-36 (96)
87 PRK08507 prephenate dehydrogen 94.2 0.057 1.2E-06 48.2 4.2 35 34-69 1-35 (275)
88 TIGR01472 gmd GDP-mannose 4,6- 94.1 0.08 1.7E-06 48.2 5.0 34 34-69 1-34 (343)
89 PRK08229 2-dehydropantoate 2-r 94.1 0.05 1.1E-06 49.7 3.7 34 33-69 2-35 (341)
90 PLN02778 3,5-epimerase/4-reduc 94.1 0.1 2.2E-06 47.1 5.5 35 29-65 5-39 (298)
91 PRK07066 3-hydroxybutyryl-CoA 94.0 0.076 1.6E-06 49.0 4.7 33 34-69 8-40 (321)
92 PRK14618 NAD(P)H-dependent gly 94.0 0.071 1.5E-06 48.7 4.4 34 33-69 4-37 (328)
93 PRK14620 NAD(P)H-dependent gly 94.0 0.063 1.4E-06 49.0 4.0 33 34-69 1-33 (326)
94 PRK07688 thiamine/molybdopteri 94.0 0.073 1.6E-06 49.4 4.5 35 33-69 24-58 (339)
95 CHL00194 ycf39 Ycf39; Provisio 94.0 0.079 1.7E-06 47.9 4.7 34 34-69 1-34 (317)
96 PRK07494 2-octaprenyl-6-methox 94.0 0.079 1.7E-06 49.0 4.8 37 30-69 4-40 (388)
97 PRK07417 arogenate dehydrogena 93.9 0.064 1.4E-06 48.0 4.0 33 34-69 1-33 (279)
98 cd01075 NAD_bind_Leu_Phe_Val_D 93.9 0.096 2.1E-06 44.9 4.7 39 28-69 23-61 (200)
99 PRK08328 hypothetical protein; 93.8 0.082 1.8E-06 46.3 4.3 36 33-70 27-62 (231)
100 TIGR03026 NDP-sugDHase nucleot 93.8 0.08 1.7E-06 50.1 4.5 33 34-69 1-33 (411)
101 PF01266 DAO: FAD dependent ox 93.8 0.09 1.9E-06 47.0 4.6 32 35-69 1-32 (358)
102 cd00757 ThiF_MoeB_HesA_family 93.8 0.087 1.9E-06 45.9 4.3 35 33-69 21-55 (228)
103 TIGR02355 moeB molybdopterin s 93.7 0.09 2E-06 46.4 4.4 35 33-69 24-58 (240)
104 PRK11908 NAD-dependent epimera 93.7 0.089 1.9E-06 48.0 4.6 34 33-68 1-35 (347)
105 TIGR00036 dapB dihydrodipicoli 93.7 0.41 8.9E-06 42.8 8.7 36 33-68 1-36 (266)
106 cd00755 YgdL_like Family of ac 93.7 0.077 1.7E-06 46.7 3.9 35 33-69 11-45 (231)
107 TIGR02356 adenyl_thiF thiazole 93.7 0.09 2E-06 45.0 4.3 36 32-69 20-55 (202)
108 PRK05690 molybdopterin biosynt 93.7 0.097 2.1E-06 46.3 4.6 36 32-69 31-66 (245)
109 PRK12921 2-dehydropantoate 2-r 93.7 0.083 1.8E-06 47.3 4.2 31 34-67 1-31 (305)
110 COG2910 Putative NADH-flavin r 93.7 0.094 2E-06 45.0 4.2 34 34-69 1-34 (211)
111 PRK05868 hypothetical protein; 93.7 0.068 1.5E-06 49.7 3.7 34 33-69 1-34 (372)
112 PLN02653 GDP-mannose 4,6-dehyd 93.6 0.14 3E-06 46.6 5.6 35 32-68 5-39 (340)
113 COG1004 Ugd Predicted UDP-gluc 93.6 0.077 1.7E-06 50.2 4.0 33 34-69 1-33 (414)
114 COG0300 DltE Short-chain dehyd 93.6 0.13 2.7E-06 46.4 5.1 49 31-81 4-54 (265)
115 PRK06753 hypothetical protein; 93.6 0.094 2E-06 48.2 4.5 33 34-69 1-33 (373)
116 PTZ00431 pyrroline carboxylate 93.6 0.1 2.2E-06 46.3 4.5 37 32-69 2-40 (260)
117 PRK07502 cyclohexadienyl dehyd 93.5 0.093 2E-06 47.5 4.3 36 33-69 6-41 (307)
118 PF01494 FAD_binding_3: FAD bi 93.5 0.1 2.2E-06 46.6 4.5 33 34-69 2-34 (356)
119 PRK15057 UDP-glucose 6-dehydro 93.5 0.08 1.7E-06 50.0 3.9 32 34-69 1-32 (388)
120 PRK07531 bifunctional 3-hydrox 93.5 0.088 1.9E-06 51.2 4.3 33 34-69 5-37 (495)
121 PRK09987 dTDP-4-dehydrorhamnos 93.5 0.087 1.9E-06 47.3 4.0 32 34-68 1-32 (299)
122 PLN02695 GDP-D-mannose-3',5'-e 93.4 0.12 2.5E-06 48.2 4.8 35 32-68 20-54 (370)
123 PRK07231 fabG 3-ketoacyl-(acyl 93.4 0.28 6.1E-06 41.9 6.9 36 32-69 4-39 (251)
124 PRK07023 short chain dehydroge 93.4 0.14 3.1E-06 43.9 5.0 35 33-69 1-35 (243)
125 PRK15116 sulfur acceptor prote 93.4 0.11 2.4E-06 46.8 4.4 36 32-69 29-64 (268)
126 COG0654 UbiH 2-polyprenyl-6-me 93.4 0.094 2E-06 48.9 4.1 33 33-68 2-34 (387)
127 TIGR01377 soxA_mon sarcosine o 93.4 0.099 2.1E-06 48.0 4.2 32 35-69 2-33 (380)
128 PLN02662 cinnamyl-alcohol dehy 93.3 0.11 2.5E-06 46.4 4.5 35 33-69 4-38 (322)
129 COG0287 TyrA Prephenate dehydr 93.3 0.53 1.1E-05 42.6 8.8 37 32-69 2-38 (279)
130 PRK10675 UDP-galactose-4-epime 93.3 0.13 2.7E-06 46.5 4.7 33 34-68 1-33 (338)
131 PLN00198 anthocyanidin reducta 93.3 0.14 3.1E-06 46.4 5.1 36 32-69 8-43 (338)
132 PF01488 Shikimate_DH: Shikima 93.3 0.15 3.3E-06 40.7 4.7 36 32-69 11-46 (135)
133 PRK11259 solA N-methyltryptoph 93.2 0.12 2.6E-06 47.4 4.5 33 34-69 4-36 (376)
134 PRK12475 thiamine/molybdopteri 93.2 0.12 2.5E-06 48.0 4.4 35 33-69 24-58 (338)
135 PRK07877 hypothetical protein; 93.2 0.089 1.9E-06 53.6 3.8 35 33-69 107-141 (722)
136 PRK05335 tRNA (uracil-5-)-meth 93.2 0.11 2.4E-06 49.9 4.3 33 34-69 3-35 (436)
137 PRK08773 2-octaprenyl-3-methyl 93.2 0.12 2.7E-06 47.9 4.6 35 32-69 5-39 (392)
138 cd01065 NAD_bind_Shikimate_DH 93.1 0.18 3.8E-06 40.5 4.9 36 32-69 18-53 (155)
139 TIGR03736 PRTRC_ThiF PRTRC sys 93.1 0.14 3.1E-06 45.5 4.6 38 31-69 9-55 (244)
140 COG1250 FadB 3-hydroxyacyl-CoA 93.1 0.12 2.7E-06 47.3 4.3 34 33-69 3-36 (307)
141 cd01485 E1-1_like Ubiquitin ac 93.0 0.12 2.7E-06 44.1 4.1 35 33-69 19-53 (198)
142 PRK08013 oxidoreductase; Provi 93.0 0.13 2.8E-06 48.1 4.5 34 33-69 3-36 (400)
143 TIGR02622 CDP_4_6_dhtase CDP-g 93.0 0.17 3.8E-06 46.2 5.2 35 33-69 4-38 (349)
144 cd01492 Aos1_SUMO Ubiquitin ac 92.9 0.14 3.1E-06 43.8 4.3 35 33-69 21-55 (197)
145 PRK06847 hypothetical protein; 92.9 0.14 3E-06 47.0 4.5 35 32-69 3-37 (375)
146 PLN02896 cinnamyl-alcohol dehy 92.9 0.17 3.6E-06 46.4 5.1 37 31-69 8-44 (353)
147 PLN02240 UDP-glucose 4-epimera 92.9 0.17 3.7E-06 45.9 5.1 36 31-68 3-38 (352)
148 PLN02657 3,8-divinyl protochlo 92.9 0.17 3.8E-06 47.5 5.2 42 26-69 53-94 (390)
149 PRK08223 hypothetical protein; 92.9 0.14 3E-06 46.6 4.3 35 33-69 27-61 (287)
150 PRK05708 2-dehydropantoate 2-r 92.9 0.14 3E-06 46.6 4.3 33 33-68 2-34 (305)
151 TIGR03589 PseB UDP-N-acetylglu 92.8 0.16 3.5E-06 46.2 4.8 37 33-69 4-40 (324)
152 PRK08849 2-octaprenyl-3-methyl 92.8 0.14 3.1E-06 47.5 4.5 32 34-68 4-35 (384)
153 PRK10217 dTDP-glucose 4,6-dehy 92.8 0.17 3.7E-06 46.1 4.9 34 34-68 2-35 (355)
154 PRK07679 pyrroline-5-carboxyla 92.7 0.18 3.9E-06 45.1 4.8 37 32-69 2-40 (279)
155 PRK05866 short chain dehydroge 92.7 0.22 4.8E-06 44.6 5.4 37 31-69 38-74 (293)
156 COG1179 Dinucleotide-utilizing 92.7 0.15 3.2E-06 45.4 4.1 35 33-69 30-64 (263)
157 PRK08268 3-hydroxy-acyl-CoA de 92.7 0.15 3.3E-06 49.8 4.6 34 33-69 7-40 (507)
158 PRK08945 putative oxoacyl-(acy 92.7 0.24 5.2E-06 42.6 5.4 47 31-79 10-58 (247)
159 PF02056 Glyco_hydro_4: Family 92.6 0.3 6.5E-06 41.6 5.7 56 35-91 1-66 (183)
160 cd05191 NAD_bind_amino_acid_DH 92.5 0.28 6.1E-06 36.0 4.9 35 31-67 21-55 (86)
161 PRK12439 NAD(P)H-dependent gly 92.5 0.14 3.1E-06 47.3 4.0 35 31-69 5-39 (341)
162 PRK05732 2-octaprenyl-6-methox 92.5 0.15 3.2E-06 47.1 4.1 34 32-68 2-38 (395)
163 PLN02650 dihydroflavonol-4-red 92.5 0.19 4.2E-06 45.8 4.8 36 32-69 4-39 (351)
164 COG1087 GalE UDP-glucose 4-epi 92.5 0.18 3.9E-06 46.3 4.5 34 34-69 1-34 (329)
165 COG0451 WcaG Nucleoside-diphos 92.4 0.21 4.4E-06 44.2 4.8 33 35-69 2-34 (314)
166 PRK05653 fabG 3-ketoacyl-(acyl 92.4 0.24 5.3E-06 41.9 5.1 36 32-69 4-39 (246)
167 TIGR03466 HpnA hopanoid-associ 92.4 0.2 4.4E-06 44.6 4.8 34 34-69 1-34 (328)
168 PRK12491 pyrroline-5-carboxyla 92.3 0.16 3.5E-06 45.5 4.0 35 34-69 3-39 (272)
169 PRK06194 hypothetical protein; 92.3 0.26 5.6E-06 43.4 5.3 35 33-69 6-40 (287)
170 PRK08163 salicylate hydroxylas 92.3 0.18 4E-06 46.6 4.5 35 32-69 3-37 (396)
171 PRK13512 coenzyme A disulfide 92.3 0.18 3.9E-06 48.0 4.5 36 33-69 1-36 (438)
172 PRK07326 short chain dehydroge 92.3 0.26 5.6E-06 41.9 5.1 35 33-69 6-40 (237)
173 TIGR00872 gnd_rel 6-phosphoglu 92.3 0.16 3.5E-06 46.0 4.0 33 34-69 1-33 (298)
174 PRK08125 bifunctional UDP-gluc 92.3 0.2 4.3E-06 50.4 4.9 37 31-69 313-350 (660)
175 PLN02697 lycopene epsilon cycl 92.3 0.25 5.4E-06 48.7 5.5 55 11-68 78-140 (529)
176 PLN02688 pyrroline-5-carboxyla 92.2 0.18 4E-06 44.4 4.1 35 34-69 1-38 (266)
177 PRK14982 acyl-ACP reductase; P 92.2 0.23 4.9E-06 46.3 4.8 39 31-69 153-191 (340)
178 PRK06184 hypothetical protein; 92.1 0.2 4.4E-06 48.3 4.7 34 33-69 3-36 (502)
179 PRK11880 pyrroline-5-carboxyla 92.1 0.19 4E-06 44.4 4.1 36 33-69 2-38 (267)
180 TIGR03364 HpnW_proposed FAD de 92.1 0.2 4.3E-06 45.9 4.4 32 35-69 2-33 (365)
181 PRK07680 late competence prote 92.1 0.18 3.9E-06 44.9 4.0 35 34-69 1-37 (273)
182 TIGR02360 pbenz_hydroxyl 4-hyd 92.1 0.2 4.3E-06 46.8 4.4 33 34-69 3-35 (390)
183 PRK07364 2-octaprenyl-6-methox 92.0 0.23 4.9E-06 46.3 4.8 34 33-69 18-51 (415)
184 PRK08020 ubiF 2-octaprenyl-3-m 92.0 0.21 4.6E-06 46.2 4.5 35 32-69 4-38 (391)
185 PRK07634 pyrroline-5-carboxyla 92.0 0.27 5.8E-06 42.7 4.9 36 32-68 3-40 (245)
186 PRK07588 hypothetical protein; 92.0 0.19 4.2E-06 46.6 4.3 33 34-69 1-33 (391)
187 PRK06617 2-octaprenyl-6-methox 92.0 0.17 3.7E-06 46.9 3.9 32 34-68 2-33 (374)
188 PRK11728 hydroxyglutarate oxid 92.0 0.19 4.2E-06 46.8 4.3 33 34-69 3-37 (393)
189 cd01484 E1-2_like Ubiquitin ac 92.0 0.2 4.3E-06 44.2 4.0 33 35-69 1-33 (234)
190 PRK11730 fadB multifunctional 92.0 0.19 4.1E-06 51.2 4.4 34 33-69 313-346 (715)
191 PLN00141 Tic62-NAD(P)-related 92.0 0.25 5.5E-06 42.9 4.7 36 32-69 16-51 (251)
192 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.0 0.19 4.1E-06 49.1 4.3 34 33-69 5-38 (503)
193 PLN02989 cinnamyl-alcohol dehy 92.0 0.27 6E-06 44.2 5.1 36 32-69 4-39 (325)
194 PRK10538 malonic semialdehyde 91.9 0.24 5.3E-06 42.7 4.6 34 34-69 1-34 (248)
195 PRK07045 putative monooxygenas 91.9 0.23 4.9E-06 46.1 4.6 35 32-69 4-38 (388)
196 PRK07102 short chain dehydroge 91.9 0.24 5.2E-06 42.5 4.4 35 33-69 1-35 (243)
197 PRK05597 molybdopterin biosynt 91.9 0.23 5.1E-06 46.3 4.6 35 33-69 28-62 (355)
198 PRK07538 hypothetical protein; 91.9 0.21 4.5E-06 46.9 4.3 33 34-69 1-33 (413)
199 PRK08085 gluconate 5-dehydroge 91.8 0.34 7.4E-06 41.8 5.4 36 32-69 8-43 (254)
200 TIGR02437 FadB fatty oxidation 91.8 0.2 4.3E-06 51.0 4.4 35 32-69 312-346 (714)
201 TIGR03206 benzo_BadH 2-hydroxy 91.8 0.27 5.8E-06 42.0 4.7 36 32-69 2-37 (250)
202 KOG1430|consensus 91.8 0.27 5.8E-06 46.2 4.9 38 32-69 3-40 (361)
203 PRK09564 coenzyme A disulfide 91.8 0.22 4.8E-06 47.0 4.5 35 34-69 1-35 (444)
204 PRK09599 6-phosphogluconate de 91.8 0.21 4.5E-06 45.2 4.1 33 34-69 1-33 (301)
205 PRK15461 NADH-dependent gamma- 91.8 0.22 4.7E-06 45.1 4.2 33 34-69 2-34 (296)
206 PRK09242 tropinone reductase; 91.8 0.59 1.3E-05 40.4 6.8 56 32-89 8-65 (257)
207 PRK05717 oxidoreductase; Valid 91.7 0.32 6.9E-06 42.1 5.1 35 33-69 10-44 (255)
208 PRK06185 hypothetical protein; 91.6 0.23 5E-06 46.2 4.4 34 33-69 6-39 (407)
209 PRK06057 short chain dehydroge 91.6 0.32 6.9E-06 42.1 4.9 36 32-69 6-41 (255)
210 PRK12384 sorbitol-6-phosphate 91.6 0.5 1.1E-05 40.8 6.2 34 34-69 3-36 (259)
211 PRK12828 short chain dehydroge 91.5 0.38 8.3E-06 40.6 5.3 36 32-69 6-41 (239)
212 PRK12429 3-hydroxybutyrate deh 91.5 0.37 8E-06 41.3 5.2 35 33-69 4-38 (258)
213 PLN02253 xanthoxin dehydrogena 91.5 0.37 7.9E-06 42.3 5.3 41 27-69 12-52 (280)
214 COG1893 ApbA Ketopantoate redu 91.5 0.22 4.7E-06 45.6 3.9 32 34-68 1-32 (307)
215 PRK12480 D-lactate dehydrogena 91.5 0.3 6.5E-06 45.2 4.8 36 31-69 144-179 (330)
216 PRK07878 molybdopterin biosynt 91.5 0.21 4.6E-06 47.2 3.9 36 32-69 41-76 (392)
217 PRK08251 short chain dehydroge 91.4 0.57 1.2E-05 40.1 6.3 34 34-69 3-36 (248)
218 PTZ00345 glycerol-3-phosphate 91.4 0.33 7.1E-06 45.6 5.1 43 26-69 4-51 (365)
219 KOG1371|consensus 91.4 0.27 5.9E-06 45.5 4.4 34 34-69 3-36 (343)
220 PRK07411 hypothetical protein; 91.4 0.23 4.9E-06 47.0 4.0 35 33-69 38-72 (390)
221 cd01486 Apg7 Apg7 is an E1-lik 91.3 0.21 4.7E-06 45.7 3.7 33 35-69 1-33 (307)
222 PRK14851 hypothetical protein; 91.3 0.22 4.7E-06 50.5 4.1 36 32-69 42-77 (679)
223 PRK05875 short chain dehydroge 91.3 0.61 1.3E-05 40.7 6.5 36 32-69 6-41 (276)
224 PRK06914 short chain dehydroge 91.3 0.64 1.4E-05 40.7 6.6 35 33-69 3-37 (280)
225 TIGR03325 BphB_TodD cis-2,3-di 91.3 0.38 8.2E-06 41.9 5.1 36 32-69 4-39 (262)
226 TIGR02028 ChlP geranylgeranyl 91.2 0.27 5.7E-06 46.3 4.3 33 34-69 1-33 (398)
227 PRK11559 garR tartronate semia 91.2 0.26 5.7E-06 44.1 4.2 33 34-69 3-35 (296)
228 TIGR02440 FadJ fatty oxidation 91.2 0.28 6E-06 49.9 4.7 35 32-69 303-338 (699)
229 TIGR03649 ergot_EASG ergot alk 91.2 0.28 6E-06 43.3 4.2 33 35-69 1-33 (285)
230 PRK06126 hypothetical protein; 91.2 0.28 6.1E-06 47.8 4.6 34 33-69 7-40 (545)
231 PRK13394 3-hydroxybutyrate deh 91.2 0.38 8.2E-06 41.4 4.9 35 33-69 7-41 (262)
232 PRK06928 pyrroline-5-carboxyla 91.2 0.33 7.1E-06 43.5 4.6 36 33-69 1-38 (277)
233 PRK08243 4-hydroxybenzoate 3-m 91.2 0.28 6.1E-06 45.7 4.4 34 33-69 2-35 (392)
234 PRK11101 glpA sn-glycerol-3-ph 91.1 0.31 6.7E-06 47.9 4.8 34 33-69 6-39 (546)
235 PRK08177 short chain dehydroge 91.1 0.4 8.7E-06 40.7 5.0 34 34-69 2-35 (225)
236 PRK06124 gluconate 5-dehydroge 91.1 0.42 9E-06 41.2 5.2 37 31-69 9-45 (256)
237 PRK12827 short chain dehydroge 91.1 0.39 8.4E-06 40.9 4.9 35 32-68 5-39 (249)
238 TIGR01373 soxB sarcosine oxida 91.1 0.32 7E-06 45.3 4.7 36 32-69 29-65 (407)
239 PRK12829 short chain dehydroge 91.1 0.4 8.6E-06 41.4 5.0 36 32-69 10-45 (264)
240 PLN02214 cinnamoyl-CoA reducta 91.1 0.35 7.7E-06 44.3 4.9 36 32-69 9-44 (342)
241 PRK06924 short chain dehydroge 91.1 0.39 8.4E-06 41.2 4.9 34 34-69 2-35 (251)
242 PRK06996 hypothetical protein; 91.0 0.32 6.9E-06 45.4 4.7 40 29-69 7-48 (398)
243 COG0289 DapB Dihydrodipicolina 91.0 1.4 3E-05 39.7 8.4 37 33-69 2-38 (266)
244 PF02558 ApbA: Ketopantoate re 91.0 0.35 7.5E-06 38.7 4.3 31 36-69 1-31 (151)
245 TIGR01832 kduD 2-deoxy-D-gluco 91.0 0.42 9E-06 41.0 5.1 36 32-69 4-39 (248)
246 PLN02256 arogenate dehydrogena 91.0 0.35 7.5E-06 44.2 4.7 35 32-69 35-69 (304)
247 PRK15182 Vi polysaccharide bio 91.0 0.32 7E-06 46.5 4.7 34 32-69 5-38 (425)
248 PRK08267 short chain dehydroge 91.0 0.35 7.7E-06 41.9 4.6 34 34-69 2-35 (260)
249 PRK12320 hypothetical protein; 91.0 0.31 6.7E-06 49.5 4.8 33 34-68 1-33 (699)
250 PRK12490 6-phosphogluconate de 91.0 0.27 6E-06 44.4 4.0 33 34-69 1-33 (299)
251 KOG2304|consensus 90.9 0.28 6.1E-06 43.5 3.8 34 33-69 11-44 (298)
252 COG2085 Predicted dinucleotide 90.9 0.44 9.6E-06 41.4 5.0 34 33-69 1-34 (211)
253 PRK07523 gluconate 5-dehydroge 90.9 0.38 8.2E-06 41.5 4.7 36 32-69 9-44 (255)
254 PRK05600 thiamine biosynthesis 90.9 0.32 6.9E-06 45.8 4.4 35 33-69 41-75 (370)
255 cd01488 Uba3_RUB Ubiquitin act 90.9 0.28 6.1E-06 44.7 4.0 33 35-69 1-33 (291)
256 PRK12745 3-ketoacyl-(acyl-carr 90.9 0.41 8.8E-06 41.1 4.9 34 34-69 3-36 (256)
257 PRK12826 3-ketoacyl-(acyl-carr 90.9 0.47 1E-05 40.4 5.2 36 32-69 5-40 (251)
258 PF07992 Pyr_redox_2: Pyridine 90.9 0.37 8E-06 39.8 4.4 32 35-69 1-32 (201)
259 TIGR02441 fa_ox_alpha_mit fatt 90.9 0.26 5.7E-06 50.4 4.1 35 32-69 334-368 (737)
260 PRK07190 hypothetical protein; 90.9 0.33 7.2E-06 47.1 4.7 35 32-69 4-38 (487)
261 TIGR01505 tartro_sem_red 2-hyd 90.9 0.23 5E-06 44.5 3.4 32 35-69 1-32 (291)
262 PRK07890 short chain dehydroge 90.8 0.43 9.3E-06 41.1 5.0 36 32-69 4-39 (258)
263 PRK12823 benD 1,6-dihydroxycyc 90.8 0.43 9.2E-06 41.3 5.0 36 32-69 7-42 (260)
264 PRK09135 pteridine reductase; 90.8 0.46 1E-05 40.4 5.1 35 33-69 6-40 (249)
265 PRK01747 mnmC bifunctional tRN 90.8 0.28 6.1E-06 49.3 4.3 33 34-69 261-293 (662)
266 TIGR03329 Phn_aa_oxid putative 90.8 0.29 6.4E-06 46.8 4.2 36 33-69 24-59 (460)
267 PRK05714 2-octaprenyl-3-methyl 90.8 0.31 6.6E-06 45.5 4.2 33 34-69 3-35 (405)
268 PRK07774 short chain dehydroge 90.7 0.42 9.2E-06 40.9 4.8 35 33-69 6-40 (250)
269 PRK06728 aspartate-semialdehyd 90.7 0.37 8E-06 45.0 4.7 47 31-77 3-51 (347)
270 PRK10084 dTDP-glucose 4,6 dehy 90.7 0.31 6.7E-06 44.3 4.2 33 34-67 1-33 (352)
271 PF02826 2-Hacid_dh_C: D-isome 90.7 0.6 1.3E-05 39.0 5.6 41 26-69 29-69 (178)
272 PRK07063 short chain dehydroge 90.7 0.85 1.8E-05 39.5 6.7 45 32-78 6-52 (260)
273 PRK07060 short chain dehydroge 90.7 0.47 1E-05 40.4 5.0 36 32-69 8-43 (245)
274 PRK05854 short chain dehydroge 90.7 0.79 1.7E-05 41.5 6.7 39 29-69 10-48 (313)
275 PRK07814 short chain dehydroge 90.7 0.49 1.1E-05 41.2 5.2 36 32-69 9-44 (263)
276 TIGR01292 TRX_reduct thioredox 90.6 0.32 7E-06 42.7 4.1 32 35-69 2-33 (300)
277 cd01489 Uba2_SUMO Ubiquitin ac 90.6 0.29 6.4E-06 45.0 3.9 33 35-69 1-33 (312)
278 PRK08762 molybdopterin biosynt 90.6 0.32 7E-06 45.6 4.3 35 32-68 134-168 (376)
279 PRK07856 short chain dehydroge 90.6 0.49 1.1E-05 40.8 5.1 36 32-69 5-40 (252)
280 PLN00016 RNA-binding protein; 90.6 0.41 9E-06 44.4 4.9 36 32-69 51-90 (378)
281 PLN00093 geranylgeranyl diphos 90.6 0.41 8.9E-06 46.0 5.0 36 31-69 37-72 (450)
282 PRK08264 short chain dehydroge 90.6 0.49 1.1E-05 40.3 5.0 37 32-69 5-41 (238)
283 PRK11150 rfaD ADP-L-glycero-D- 90.5 0.35 7.7E-06 43.1 4.3 33 36-69 2-34 (308)
284 PRK06138 short chain dehydroge 90.5 0.47 1E-05 40.6 4.9 36 32-69 4-39 (252)
285 PRK08850 2-octaprenyl-6-methox 90.5 0.3 6.5E-06 45.6 3.9 32 34-68 5-36 (405)
286 PRK05884 short chain dehydroge 90.5 0.43 9.3E-06 40.8 4.6 34 34-69 1-34 (223)
287 PLN02260 probable rhamnose bio 90.5 0.39 8.6E-06 48.1 5.0 37 32-68 5-41 (668)
288 PF02629 CoA_binding: CoA bind 90.4 0.37 7.9E-06 36.2 3.7 37 32-69 2-38 (96)
289 PRK09754 phenylpropionate diox 90.4 0.34 7.4E-06 45.3 4.2 37 32-69 2-38 (396)
290 PRK06197 short chain dehydroge 90.4 0.72 1.6E-05 41.2 6.2 36 32-69 15-50 (306)
291 TIGR01381 E1_like_apg7 E1-like 90.4 0.32 7E-06 48.8 4.2 37 31-69 336-372 (664)
292 PF02719 Polysacc_synt_2: Poly 90.4 0.28 6.1E-06 44.7 3.5 33 36-69 1-33 (293)
293 PRK06500 short chain dehydroge 90.4 0.47 1E-05 40.5 4.8 35 33-69 6-40 (249)
294 PRK09009 C factor cell-cell si 90.3 0.48 1E-05 40.3 4.8 36 34-69 1-36 (235)
295 TIGR03219 salicylate_mono sali 90.3 0.3 6.6E-06 45.8 3.8 34 34-69 1-34 (414)
296 PLN02583 cinnamoyl-CoA reducta 90.3 0.52 1.1E-05 42.2 5.2 35 32-68 5-39 (297)
297 TIGR00137 gid_trmFO tRNA:m(5)U 90.3 0.32 7E-06 46.7 4.0 32 35-69 2-33 (433)
298 PRK08340 glucose-1-dehydrogena 90.3 0.45 9.8E-06 41.3 4.7 34 34-69 1-34 (259)
299 PRK11154 fadJ multifunctional 90.3 0.35 7.6E-06 49.2 4.5 35 32-69 308-343 (708)
300 PLN02968 Probable N-acetyl-gam 90.3 0.41 9E-06 45.2 4.7 37 32-69 37-73 (381)
301 PRK12939 short chain dehydroge 90.3 0.5 1.1E-05 40.3 4.9 45 32-78 6-52 (250)
302 PRK07608 ubiquinone biosynthes 90.3 0.39 8.5E-06 44.2 4.4 34 33-69 5-38 (388)
303 PRK06180 short chain dehydroge 90.3 0.48 1E-05 41.7 4.8 35 33-69 4-38 (277)
304 PRK15059 tartronate semialdehy 90.2 0.38 8.2E-06 43.6 4.2 33 34-69 1-33 (292)
305 TIGR01989 COQ6 Ubiquinone bios 90.2 0.33 7.2E-06 46.1 4.0 32 35-69 2-37 (437)
306 TIGR01988 Ubi-OHases Ubiquinon 90.2 0.37 8E-06 44.1 4.2 31 36-69 2-32 (385)
307 PRK09186 flagellin modificatio 90.2 0.6 1.3E-05 40.1 5.4 44 32-77 3-48 (256)
308 PF04321 RmlD_sub_bind: RmlD s 90.2 0.31 6.6E-06 43.8 3.6 33 34-68 1-33 (286)
309 PRK10157 putative oxidoreducta 90.2 0.43 9.3E-06 45.4 4.8 34 33-69 5-38 (428)
310 PRK12825 fabG 3-ketoacyl-(acyl 90.2 0.6 1.3E-05 39.5 5.2 36 32-69 5-40 (249)
311 PRK11445 putative oxidoreducta 90.1 0.38 8.2E-06 44.3 4.2 32 34-69 2-33 (351)
312 PRK06475 salicylate hydroxylas 90.1 0.36 7.8E-06 45.1 4.1 33 34-69 3-35 (400)
313 PLN02780 ketoreductase/ oxidor 90.0 0.67 1.5E-05 42.3 5.7 45 33-79 53-99 (320)
314 TIGR01214 rmlD dTDP-4-dehydror 90.0 0.38 8.2E-06 42.2 4.0 32 35-68 1-32 (287)
315 PF13460 NAD_binding_10: NADH( 90.0 0.46 1E-05 38.8 4.3 32 36-69 1-32 (183)
316 PRK06183 mhpA 3-(3-hydroxyphen 90.0 0.39 8.5E-06 46.9 4.4 36 31-69 8-43 (538)
317 PRK07024 short chain dehydroge 90.0 0.52 1.1E-05 40.9 4.8 34 34-69 3-36 (257)
318 COG1486 CelF Alpha-galactosida 90.0 2.4 5.3E-05 40.8 9.6 73 163-239 319-395 (442)
319 PRK00048 dihydrodipicolinate r 90.0 0.54 1.2E-05 41.8 4.9 37 33-69 1-37 (257)
320 PRK07577 short chain dehydroge 89.9 0.67 1.4E-05 39.2 5.3 35 33-69 3-37 (234)
321 TIGR01777 yfcH conserved hypot 89.9 0.38 8.1E-06 42.1 3.9 32 36-69 1-32 (292)
322 TIGR02023 BchP-ChlP geranylger 89.9 0.4 8.6E-06 44.7 4.2 31 35-68 2-32 (388)
323 PRK06523 short chain dehydroge 89.9 0.62 1.3E-05 40.2 5.2 36 32-69 8-43 (260)
324 PRK06171 sorbitol-6-phosphate 89.9 0.69 1.5E-05 40.2 5.5 36 32-69 8-43 (266)
325 TIGR01850 argC N-acetyl-gamma- 89.8 0.45 9.8E-06 44.2 4.5 39 34-73 1-40 (346)
326 PRK00436 argC N-acetyl-gamma-g 89.8 0.44 9.6E-06 44.2 4.4 34 33-66 2-35 (343)
327 PRK06172 short chain dehydroge 89.8 0.65 1.4E-05 40.0 5.2 36 32-69 6-41 (253)
328 PRK06841 short chain dehydroge 89.8 0.59 1.3E-05 40.2 4.9 36 32-69 14-49 (255)
329 PRK07806 short chain dehydroge 89.7 0.7 1.5E-05 39.5 5.4 35 33-69 6-40 (248)
330 PRK05786 fabG 3-ketoacyl-(acyl 89.7 0.62 1.3E-05 39.5 5.0 36 32-69 4-39 (238)
331 TIGR03376 glycerol3P_DH glycer 89.7 0.42 9.2E-06 44.5 4.2 33 35-68 1-39 (342)
332 PRK08278 short chain dehydroge 89.7 0.67 1.4E-05 40.8 5.3 36 32-69 5-40 (273)
333 PRK07478 short chain dehydroge 89.7 0.71 1.5E-05 39.8 5.4 45 32-78 5-51 (254)
334 PRK14852 hypothetical protein; 89.7 0.36 7.7E-06 50.7 3.9 36 32-69 331-366 (989)
335 PRK07825 short chain dehydroge 89.7 0.58 1.3E-05 40.9 4.8 36 32-69 4-39 (273)
336 PRK07035 short chain dehydroge 89.6 0.65 1.4E-05 39.9 5.1 36 32-69 7-42 (252)
337 PRK08017 oxidoreductase; Provi 89.6 0.57 1.2E-05 40.2 4.7 34 34-69 3-36 (256)
338 PRK07208 hypothetical protein; 89.5 0.46 1E-05 45.3 4.5 35 32-69 3-37 (479)
339 PRK08703 short chain dehydroge 89.5 0.69 1.5E-05 39.5 5.1 36 32-69 5-40 (239)
340 PRK08132 FAD-dependent oxidore 89.5 0.41 8.9E-06 46.8 4.2 34 33-69 23-56 (547)
341 PRK06834 hypothetical protein; 89.5 0.49 1.1E-05 45.9 4.6 34 33-69 3-36 (488)
342 PRK12266 glpD glycerol-3-phosp 89.5 0.48 1E-05 46.2 4.6 34 33-69 6-39 (508)
343 PRK04148 hypothetical protein; 89.5 0.71 1.5E-05 37.4 4.8 34 32-69 16-49 (134)
344 PRK06953 short chain dehydroge 89.5 0.63 1.4E-05 39.4 4.8 34 34-69 2-35 (222)
345 PRK08643 acetoin reductase; Va 89.4 0.62 1.3E-05 40.1 4.8 34 34-69 3-36 (256)
346 PLN02464 glycerol-3-phosphate 89.4 0.51 1.1E-05 47.4 4.8 35 32-69 70-104 (627)
347 PF13450 NAD_binding_8: NAD(P) 89.4 0.73 1.6E-05 32.4 4.3 29 38-69 1-29 (68)
348 smart00846 Gp_dh_N Glyceraldeh 89.4 1.7 3.7E-05 35.6 7.1 33 34-67 1-33 (149)
349 PRK10015 oxidoreductase; Provi 89.4 0.52 1.1E-05 44.9 4.7 34 33-69 5-38 (429)
350 PRK11749 dihydropyrimidine deh 89.4 0.56 1.2E-05 44.8 4.9 36 31-69 138-173 (457)
351 COG0644 FixC Dehydrogenases (f 89.4 0.49 1.1E-05 44.4 4.4 33 34-69 4-36 (396)
352 PRK05557 fabG 3-ketoacyl-(acyl 89.3 0.79 1.7E-05 38.8 5.3 36 32-69 4-39 (248)
353 PRK08277 D-mannonate oxidoredu 89.2 0.73 1.6E-05 40.4 5.2 36 32-69 9-44 (278)
354 PRK09126 hypothetical protein; 89.2 0.51 1.1E-05 43.6 4.4 34 33-69 3-36 (392)
355 PLN02985 squalene monooxygenas 89.2 0.61 1.3E-05 45.7 5.1 37 30-69 40-76 (514)
356 PF13738 Pyr_redox_3: Pyridine 89.2 0.53 1.2E-05 39.0 4.1 35 37-73 1-35 (203)
357 PRK08244 hypothetical protein; 89.2 0.47 1E-05 45.7 4.3 33 34-69 3-35 (493)
358 PRK06198 short chain dehydroge 89.2 0.63 1.4E-05 40.1 4.7 37 32-69 5-41 (260)
359 PLN02686 cinnamoyl-CoA reducta 89.1 0.65 1.4E-05 43.1 5.0 36 31-68 51-86 (367)
360 PRK08040 putative semialdehyde 89.1 0.57 1.2E-05 43.5 4.6 44 32-76 3-48 (336)
361 PRK06182 short chain dehydroge 89.1 0.71 1.5E-05 40.4 5.0 36 32-69 2-37 (273)
362 PRK07333 2-octaprenyl-6-methox 89.1 0.52 1.1E-05 43.6 4.3 35 34-69 2-36 (403)
363 PRK05257 malate:quinone oxidor 89.0 0.55 1.2E-05 45.7 4.6 37 32-69 4-40 (494)
364 PLN02927 antheraxanthin epoxid 89.0 0.5 1.1E-05 47.9 4.4 36 31-69 79-114 (668)
365 PRK08655 prephenate dehydrogen 89.0 0.57 1.2E-05 45.0 4.6 34 34-69 1-34 (437)
366 PRK13369 glycerol-3-phosphate 89.0 0.55 1.2E-05 45.6 4.5 34 33-69 6-39 (502)
367 PRK06545 prephenate dehydrogen 88.9 0.48 1E-05 44.1 4.0 33 34-69 1-33 (359)
368 PRK09072 short chain dehydroge 88.9 0.85 1.8E-05 39.6 5.4 36 32-69 4-39 (263)
369 PRK08226 short chain dehydroge 88.9 0.69 1.5E-05 40.0 4.8 36 32-69 5-40 (263)
370 PRK07454 short chain dehydroge 88.9 0.68 1.5E-05 39.5 4.7 35 33-69 6-40 (241)
371 PRK07666 fabG 3-ketoacyl-(acyl 88.9 0.79 1.7E-05 39.1 5.0 35 33-69 7-41 (239)
372 PRK07067 sorbitol dehydrogenas 88.8 0.7 1.5E-05 39.9 4.7 35 33-69 6-40 (257)
373 PRK06476 pyrroline-5-carboxyla 88.8 0.48 1E-05 41.7 3.7 35 34-69 1-36 (258)
374 PF01113 DapB_N: Dihydrodipico 88.8 0.75 1.6E-05 36.2 4.5 36 34-69 1-36 (124)
375 PRK08220 2,3-dihydroxybenzoate 88.8 0.82 1.8E-05 39.1 5.1 37 31-69 6-42 (252)
376 PF01073 3Beta_HSD: 3-beta hyd 88.8 0.45 9.8E-06 42.7 3.6 32 38-69 2-33 (280)
377 PRK05867 short chain dehydroge 88.8 0.76 1.6E-05 39.7 4.9 36 32-69 8-43 (253)
378 PRK05993 short chain dehydroge 88.8 0.65 1.4E-05 40.9 4.6 34 34-69 5-38 (277)
379 PRK08219 short chain dehydroge 88.8 0.62 1.3E-05 39.1 4.2 34 33-69 3-36 (227)
380 PRK06200 2,3-dihydroxy-2,3-dih 88.8 0.78 1.7E-05 39.8 5.0 36 32-69 5-40 (263)
381 PLN02986 cinnamyl-alcohol dehy 88.7 0.84 1.8E-05 41.0 5.3 34 33-68 5-38 (322)
382 PLN02172 flavin-containing mon 88.7 0.6 1.3E-05 45.1 4.6 35 32-69 9-43 (461)
383 PRK15438 erythronate-4-phospha 88.7 0.56 1.2E-05 44.3 4.3 36 31-69 114-149 (378)
384 PRK08213 gluconate 5-dehydroge 88.7 0.81 1.8E-05 39.6 5.0 35 33-69 12-46 (259)
385 PRK08664 aspartate-semialdehyd 88.7 0.67 1.5E-05 43.0 4.8 36 33-69 3-38 (349)
386 PRK08642 fabG 3-ketoacyl-(acyl 88.7 0.92 2E-05 38.8 5.3 34 33-68 5-38 (253)
387 PRK05693 short chain dehydroge 88.7 0.69 1.5E-05 40.5 4.7 34 34-69 2-35 (274)
388 PF01262 AlaDh_PNT_C: Alanine 88.7 0.75 1.6E-05 38.0 4.6 35 32-69 19-53 (168)
389 PRK12770 putative glutamate sy 88.7 0.75 1.6E-05 42.3 5.1 35 32-69 17-51 (352)
390 PRK14874 aspartate-semialdehyd 88.7 0.65 1.4E-05 42.9 4.6 45 33-77 1-46 (334)
391 KOG1502|consensus 88.7 0.4 8.8E-06 44.4 3.2 28 32-59 5-32 (327)
392 PRK08300 acetaldehyde dehydrog 88.7 0.78 1.7E-05 42.1 5.0 37 32-69 3-39 (302)
393 PRK06179 short chain dehydroge 88.7 0.76 1.7E-05 40.0 4.9 35 33-69 4-38 (270)
394 PTZ00318 NADH dehydrogenase-li 88.7 0.57 1.2E-05 44.4 4.4 35 32-69 9-43 (424)
395 PRK06398 aldose dehydrogenase; 88.6 0.61 1.3E-05 40.6 4.2 36 32-69 5-40 (258)
396 COG2072 TrkA Predicted flavopr 88.6 0.62 1.4E-05 44.7 4.6 44 32-77 7-50 (443)
397 PRK06181 short chain dehydroge 88.6 0.69 1.5E-05 40.0 4.6 34 34-69 2-35 (263)
398 TIGR02032 GG-red-SF geranylger 88.6 0.63 1.4E-05 40.5 4.3 32 35-69 2-33 (295)
399 PRK07453 protochlorophyllide o 88.5 0.87 1.9E-05 41.1 5.3 36 32-69 5-40 (322)
400 PRK06101 short chain dehydroge 88.5 0.78 1.7E-05 39.4 4.8 34 34-69 2-35 (240)
401 PRK12831 putative oxidoreducta 88.5 0.69 1.5E-05 44.6 4.9 36 31-69 138-173 (464)
402 COG0136 Asd Aspartate-semialde 88.5 0.62 1.3E-05 43.2 4.3 41 33-73 1-42 (334)
403 PLN02712 arogenate dehydrogena 88.5 0.71 1.5E-05 46.8 5.1 35 32-69 51-85 (667)
404 PRK12937 short chain dehydroge 88.4 0.96 2.1E-05 38.5 5.3 36 32-69 4-39 (245)
405 PLN02463 lycopene beta cyclase 88.4 0.74 1.6E-05 44.3 5.0 41 26-69 21-61 (447)
406 PTZ00367 squalene epoxidase; P 88.4 0.69 1.5E-05 45.9 4.9 35 32-69 32-66 (567)
407 PRK06949 short chain dehydroge 88.4 0.88 1.9E-05 39.1 5.1 36 32-69 8-43 (258)
408 PRK14027 quinate/shikimate deh 88.4 0.7 1.5E-05 41.8 4.5 43 33-77 127-171 (283)
409 TIGR01963 PHB_DH 3-hydroxybuty 88.3 0.72 1.6E-05 39.4 4.4 34 34-69 2-35 (255)
410 TIGR01316 gltA glutamate synth 88.3 0.71 1.5E-05 44.2 4.7 35 32-69 132-166 (449)
411 PTZ00383 malate:quinone oxidor 88.3 0.67 1.4E-05 45.3 4.6 37 32-69 44-80 (497)
412 PRK07578 short chain dehydroge 88.2 0.76 1.6E-05 38.2 4.4 33 34-69 1-33 (199)
413 TIGR01984 UbiH 2-polyprenyl-6- 88.2 0.62 1.3E-05 42.8 4.2 32 35-69 1-33 (382)
414 TIGR01179 galE UDP-glucose-4-e 88.2 0.68 1.5E-05 40.9 4.3 31 35-67 1-31 (328)
415 PRK07062 short chain dehydroge 88.2 1.5 3.3E-05 38.0 6.4 45 32-78 7-53 (265)
416 PRK06701 short chain dehydroge 88.2 0.98 2.1E-05 40.3 5.4 37 31-69 44-80 (290)
417 PRK07201 short chain dehydroge 88.2 0.69 1.5E-05 45.9 4.7 36 34-69 1-36 (657)
418 PRK05876 short chain dehydroge 88.2 0.98 2.1E-05 39.9 5.3 35 33-69 6-40 (275)
419 PRK07576 short chain dehydroge 88.2 1 2.2E-05 39.4 5.3 36 32-69 8-43 (264)
420 PRK08265 short chain dehydroge 88.2 0.93 2E-05 39.5 5.1 36 32-69 5-40 (261)
421 PRK05650 short chain dehydroge 88.1 0.86 1.9E-05 39.8 4.9 34 34-69 1-34 (270)
422 PRK05671 aspartate-semialdehyd 88.1 0.72 1.6E-05 42.8 4.5 44 32-76 3-48 (336)
423 TIGR01181 dTDP_gluc_dehyt dTDP 88.1 0.6 1.3E-05 41.2 3.9 33 35-67 1-33 (317)
424 PRK11199 tyrA bifunctional cho 88.1 0.81 1.8E-05 42.9 4.9 36 32-69 97-132 (374)
425 PRK12936 3-ketoacyl-(acyl-carr 88.1 0.95 2.1E-05 38.4 5.0 36 32-69 5-40 (245)
426 PLN02712 arogenate dehydrogena 88.0 0.76 1.6E-05 46.6 5.0 36 31-69 367-402 (667)
427 COG1252 Ndh NADH dehydrogenase 88.0 0.73 1.6E-05 43.9 4.6 37 32-69 2-38 (405)
428 PRK06550 fabG 3-ketoacyl-(acyl 88.0 1.1 2.3E-05 38.1 5.2 36 32-69 4-39 (235)
429 PRK08628 short chain dehydroge 87.9 0.98 2.1E-05 38.9 5.1 36 32-69 6-41 (258)
430 PRK06196 oxidoreductase; Provi 87.9 0.85 1.9E-05 41.0 4.8 36 32-69 25-60 (315)
431 PRK05565 fabG 3-ketoacyl-(acyl 87.9 0.92 2E-05 38.5 4.8 35 33-69 5-40 (247)
432 PRK07074 short chain dehydroge 87.9 0.92 2E-05 39.1 4.8 34 34-69 3-36 (257)
433 cd01078 NAD_bind_H4MPT_DH NADP 87.9 0.98 2.1E-05 37.9 4.9 36 32-69 27-62 (194)
434 PRK06935 2-deoxy-D-gluconate 3 87.8 0.99 2.1E-05 39.0 5.0 36 32-69 14-49 (258)
435 PRK00257 erythronate-4-phospha 87.8 0.78 1.7E-05 43.4 4.6 35 32-69 115-149 (381)
436 PRK13403 ketol-acid reductoiso 87.8 1.5 3.3E-05 40.7 6.4 36 31-69 14-49 (335)
437 PRK12367 short chain dehydroge 87.7 0.87 1.9E-05 39.8 4.6 36 32-69 13-48 (245)
438 KOG2336|consensus 87.7 0.53 1.1E-05 42.9 3.2 34 34-69 83-116 (422)
439 PRK06567 putative bifunctional 87.6 0.69 1.5E-05 48.8 4.4 35 31-68 381-415 (1028)
440 cd05311 NAD_bind_2_malic_enz N 87.6 0.86 1.9E-05 39.8 4.5 37 32-69 24-61 (226)
441 PRK08263 short chain dehydroge 87.6 0.98 2.1E-05 39.6 4.9 34 34-69 4-37 (275)
442 KOG2018|consensus 87.6 0.67 1.5E-05 42.9 3.8 34 34-69 75-108 (430)
443 PRK07233 hypothetical protein; 87.5 0.66 1.4E-05 43.1 4.0 32 35-69 1-32 (434)
444 PRK12810 gltD glutamate syntha 87.5 0.84 1.8E-05 43.9 4.8 35 32-69 142-176 (471)
445 PRK09897 hypothetical protein; 87.5 0.78 1.7E-05 45.3 4.6 36 33-69 1-36 (534)
446 PTZ00142 6-phosphogluconate de 87.5 0.61 1.3E-05 45.3 3.8 33 34-69 2-34 (470)
447 PRK12814 putative NADPH-depend 87.4 0.81 1.8E-05 46.1 4.8 35 32-69 192-226 (652)
448 PRK09496 trkA potassium transp 87.4 0.68 1.5E-05 43.8 4.0 33 34-69 1-33 (453)
449 PRK12824 acetoacetyl-CoA reduc 87.4 1.1 2.4E-05 38.1 5.0 34 34-69 3-36 (245)
450 PRK07831 short chain dehydroge 87.4 2.2 4.7E-05 37.0 6.9 36 32-69 16-52 (262)
451 PRK07069 short chain dehydroge 87.3 0.87 1.9E-05 38.9 4.4 32 35-68 1-32 (251)
452 TIGR01318 gltD_gamma_fam gluta 87.3 0.91 2E-05 43.7 4.9 35 32-69 140-174 (467)
453 PRK07109 short chain dehydroge 87.3 1.1 2.5E-05 40.9 5.3 36 32-69 7-42 (334)
454 TIGR02197 heptose_epim ADP-L-g 87.3 0.7 1.5E-05 41.0 3.8 33 36-69 1-33 (314)
455 PF03435 Saccharop_dh: Sacchar 87.2 0.72 1.6E-05 43.0 4.0 33 36-69 1-33 (386)
456 cd01491 Ube1_repeat1 Ubiquitin 87.2 0.86 1.9E-05 41.5 4.3 35 33-69 19-53 (286)
457 PRK08589 short chain dehydroge 87.1 1.2 2.5E-05 39.2 5.1 45 32-78 5-50 (272)
458 PRK06483 dihydromonapterin red 87.1 1.1 2.4E-05 38.1 4.9 34 34-69 3-36 (236)
459 PRK07832 short chain dehydroge 87.1 0.94 2E-05 39.6 4.5 34 34-69 1-34 (272)
460 COG0240 GpsA Glycerol-3-phosph 87.1 0.82 1.8E-05 42.4 4.2 34 33-69 1-34 (329)
461 PRK06912 acoL dihydrolipoamide 87.1 0.84 1.8E-05 43.6 4.5 33 34-69 1-33 (458)
462 TIGR01746 Thioester-redct thio 87.0 0.84 1.8E-05 41.0 4.2 35 35-69 1-35 (367)
463 PRK08294 phenol 2-monooxygenas 87.0 0.79 1.7E-05 46.0 4.4 34 33-69 32-66 (634)
464 PRK12742 oxidoreductase; Provi 87.0 1.3 2.8E-05 37.5 5.2 34 33-68 6-39 (237)
465 PRK06113 7-alpha-hydroxysteroi 87.0 1.2 2.6E-05 38.5 5.0 46 32-79 10-57 (255)
466 PRK05872 short chain dehydroge 87.0 1.4 3.1E-05 39.3 5.7 36 32-69 8-43 (296)
467 PRK08339 short chain dehydroge 87.0 1.4 3E-05 38.6 5.5 36 32-69 7-42 (263)
468 TIGR01790 carotene-cycl lycope 86.9 0.79 1.7E-05 42.3 4.1 31 36-69 2-32 (388)
469 PRK00258 aroE shikimate 5-dehy 86.9 1 2.2E-05 40.3 4.7 37 31-69 121-157 (278)
470 PRK13304 L-aspartate dehydroge 86.8 0.81 1.8E-05 40.8 4.0 36 33-69 1-37 (265)
471 PRK06598 aspartate-semialdehyd 86.8 0.83 1.8E-05 43.0 4.1 37 33-69 1-39 (369)
472 PRK02318 mannitol-1-phosphate 86.8 0.81 1.7E-05 43.0 4.1 33 34-69 1-34 (381)
473 COG3349 Uncharacterized conser 86.7 1.1 2.4E-05 43.7 5.0 57 34-93 1-61 (485)
474 PRK12771 putative glutamate sy 86.7 1 2.2E-05 44.4 4.9 35 32-69 136-170 (564)
475 TIGR01809 Shik-DH-AROM shikima 86.6 1 2.2E-05 40.5 4.6 36 32-69 124-159 (282)
476 PRK06482 short chain dehydroge 86.5 1.2 2.6E-05 38.9 4.9 34 34-69 3-36 (276)
477 TIGR00465 ilvC ketol-acid redu 86.4 1 2.2E-05 41.5 4.4 34 32-68 2-35 (314)
478 PRK06077 fabG 3-ketoacyl-(acyl 86.4 1.6 3.4E-05 37.3 5.4 34 32-67 5-38 (252)
479 PRK06114 short chain dehydroge 86.3 1.6 3.5E-05 37.7 5.5 36 32-69 7-42 (254)
480 PRK12769 putative oxidoreducta 86.3 1.1 2.3E-05 45.2 4.9 35 32-69 326-360 (654)
481 PRK09291 short chain dehydroge 86.3 1.3 2.8E-05 38.0 4.9 34 34-69 3-36 (257)
482 PRK11883 protoporphyrinogen ox 86.2 1 2.2E-05 42.3 4.5 35 34-69 1-35 (451)
483 PRK06947 glucose-1-dehydrogena 86.2 1.4 3.1E-05 37.6 5.1 32 34-67 3-34 (248)
484 PRK05479 ketol-acid reductoiso 86.1 1 2.3E-05 41.7 4.4 35 32-69 16-50 (330)
485 PRK07424 bifunctional sterol d 86.1 1.3 2.8E-05 42.2 5.1 36 32-69 177-212 (406)
486 PRK05865 hypothetical protein; 86.1 1 2.2E-05 46.8 4.8 33 34-68 1-33 (854)
487 PRK07792 fabG 3-ketoacyl-(acyl 86.0 1.6 3.6E-05 39.2 5.6 37 31-69 10-46 (306)
488 PRK08605 D-lactate dehydrogena 85.9 1.2 2.6E-05 41.2 4.7 36 31-69 144-180 (332)
489 PRK07904 short chain dehydroge 85.9 1.4 3E-05 38.4 4.9 37 32-69 7-43 (253)
490 PRK06139 short chain dehydroge 85.9 1.3 2.9E-05 40.6 5.0 36 32-69 6-41 (330)
491 PTZ00188 adrenodoxin reductase 85.9 1.4 3.1E-05 43.1 5.3 37 30-69 36-73 (506)
492 PRK08217 fabG 3-ketoacyl-(acyl 85.8 1.5 3.2E-05 37.3 5.0 36 32-69 4-39 (253)
493 PRK12744 short chain dehydroge 85.8 1.7 3.6E-05 37.6 5.3 35 32-68 7-41 (257)
494 PLN02268 probable polyamine ox 85.8 1 2.3E-05 42.4 4.3 33 34-69 1-33 (435)
495 PRK12746 short chain dehydroge 85.8 1.5 3.3E-05 37.6 5.0 32 33-66 6-37 (254)
496 PRK09134 short chain dehydroge 85.8 1.7 3.7E-05 37.5 5.4 35 32-68 8-42 (258)
497 PRK08255 salicylyl-CoA 5-hydro 85.8 0.97 2.1E-05 46.4 4.4 35 34-69 1-35 (765)
498 COG1233 Phytoene dehydrogenase 85.7 1.3 2.7E-05 43.0 5.0 35 32-69 2-36 (487)
499 cd01490 Ube1_repeat2 Ubiquitin 85.7 0.99 2.2E-05 43.4 4.1 34 35-69 1-38 (435)
500 PRK09853 putative selenate red 85.7 1.1 2.3E-05 47.6 4.6 35 32-69 538-572 (1019)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.1e-50 Score=368.78 Aligned_cols=211 Identities=70% Similarity=1.090 Sum_probs=190.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEE-cC---------ch----------
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAF-NG---------AD---------- 93 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~-~~---------~d---------- 93 (248)
|||+||||+|+||+++||+|+.+++++||+|+|++.++|++|||+|+.++++++.+ .+ +|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999999899999999999999999999999999889999999999866666653 21 11
Q ss_pred ------------------------------------------------------------------------------hh
Q psy14621 94 ------------------------------------------------------------------------------QL 95 (248)
Q Consensus 94 ------------------------------------------------------------------------------~~ 95 (248)
++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 88
Q ss_pred cCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhc
Q psy14621 96 KGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQ 175 (248)
Q Consensus 96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~ 175 (248)
++++|++|++|||||||||||||+||+++|..+++++++++|.++|+++||+|+++|.|||+|+||+|.++++|+++|++
T Consensus 161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~ 240 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240 (310)
T ss_pred hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHH
Confidence 89999999999999998899999999999876777767999999999999999997546899999999999999999997
Q ss_pred ccCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14621 176 GLKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245 (248)
Q Consensus 176 ~l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~ 245 (248)
++++++.++|+++++++ | +++|||+||++|++||++++++++|+++|+++|++|++.|++.++.+++|+
T Consensus 241 ~~~~~~~~~~~s~~~~~-g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 241 GLKGEKGVIECAYVESD-VTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred hcCCCcceEEEEEEecc-CCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 54467788888888877 7 899999999999999999999923999999999999999999999999884
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.5e-50 Score=368.20 Aligned_cols=213 Identities=69% Similarity=1.048 Sum_probs=190.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcC-c---------h-----------
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG-A---------D----------- 93 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~-~---------d----------- 93 (248)
||+||||+|+||+++||+|+.+++++||+|+|+++++|++|||+|+.++++++.+++ + |
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 899999999999999999999999999999999999999999999986667775321 1 1
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy14621 94 -----------------------------------------------------------------------------QLK 96 (248)
Q Consensus 94 -----------------------------------------------------------------------------~~l 96 (248)
+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 888
Q ss_pred CCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhcc
Q psy14621 97 GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQG 176 (248)
Q Consensus 97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~ 176 (248)
+++|++|++||||||+++||||+||+++....++++++++|.++|+++||+|+++|.|||+|+||+|.|+++|+++|+..
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~ 240 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence 99999999999999933499999999984323566668999999999999999975478999999999999999999975
Q ss_pred cCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621 177 LKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247 (248)
Q Consensus 177 l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~ 247 (248)
++|++.++|++|++++|| +++|||+||++|++||++++++++||++|+++|++|++.|++.++.+++|++.
T Consensus 241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~~ 312 (312)
T TIGR01772 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVAS 312 (312)
T ss_pred hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 558999999889999998 89999999999999999999993499999999999999999999999999863
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2e-50 Score=365.17 Aligned_cols=205 Identities=42% Similarity=0.607 Sum_probs=184.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEc-C-------ch--------
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFN-G-------AD-------- 93 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~-~-------~d-------- 93 (248)
+||+|||| |+||+++||+|..+++.+||+|||+++ ++|++|||+|+.++ ..++++. + +|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~ 79 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV 79 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence 59999999 999999999999999988999999997 99999999999864 2344333 1 12
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy14621 94 -----------------------------------------------------------------------------QLK 96 (248)
Q Consensus 94 -----------------------------------------------------------------------------~~l 96 (248)
+++
T Consensus 80 prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~ 159 (313)
T COG0039 80 PRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKL 159 (313)
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHh
Confidence 899
Q ss_pred CCCCCCeeEeEEeccCCCcccccccCcc----cCCCCC----hHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHH
Q psy14621 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFP----DDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 168 (248)
Q Consensus 97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~~----~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~ 168 (248)
+++|++|++|||||| ||||||+||+++ |+.++. ++++++|.++||++|++|+++| |.| |+||+|.|+++
T Consensus 160 ~v~~~~V~~~ViGeH-Gdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~A~a~a~ 236 (313)
T COG0039 160 GVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAALAR 236 (313)
T ss_pred CCChhHceeeEeccC-CCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhHHHHHHH
Confidence 999999999999999 999999999998 765532 3578899999999999999975 444 99999999999
Q ss_pred HHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14621 169 FAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 246 (248)
Q Consensus 169 iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~ 246 (248)
|+++|++ |+++++|+| |++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.||+.++.+.++..
T Consensus 237 ~~~ail~---d~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~~~~~~~ 312 (313)
T COG0039 237 MVEAILR---DEKRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIELVKELVL 312 (313)
T ss_pred HHHHHHc---CCCceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999 999999998 9999998 8999999999999999999999 69999999999999999999999987754
No 4
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-49 Score=359.58 Aligned_cols=213 Identities=57% Similarity=0.922 Sum_probs=191.7
Q ss_pred cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcC----------ch------
Q psy14621 30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG----------AD------ 93 (248)
Q Consensus 30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~----------~d------ 93 (248)
..+++||+||||||+||+++||.|+.+++++||+|+|++.++|++|||+|+....++..+++ .|
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 34677999999999999999999999999999999999559999999999887655654322 11
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~ 164 (321)
T PTZ00325 85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF 164 (321)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence
Q ss_pred --hhcCCCCCCeeEeEEeccCCC-cccccccCcc-cCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHH
Q psy14621 94 --QLKGLNPTDVNVPVIGGHAGI-TIIPLISQAT-PSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARF 169 (248)
Q Consensus 94 --~~l~v~p~~V~~~ViGeHsGd-s~vp~wS~a~-p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~i 169 (248)
++++++|++|++|||||| || ||||+||++- | ++++++++|.++|+++||+|+++|.|||+|+||||.++++|
T Consensus 165 la~~l~v~~~~V~~~VlGeH-Gd~s~v~~~S~~g~~---l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i 240 (321)
T PTZ00325 165 VAEALGMNPYDVNVPVVGGH-SGVTIVPLLSQTGLS---LPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEW 240 (321)
T ss_pred HHHHhCcChhheEEEEEeec-CCcccccchhccCCC---CCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHH
Confidence 889999999999999999 89 8999999993 4 45667999999999999999997645699999999999999
Q ss_pred HHHHhcccCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621 170 AFSLIQGLKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247 (248)
Q Consensus 170 v~aIl~~l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~ 247 (248)
+++|+++++|+++++|++|++++|| +++|||+||++|++|++++++ + +|+++|+++|++|++.|++.+++++.|+++
T Consensus 241 ~~ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~ 319 (321)
T PTZ00325 241 STSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKKNIEKGLEFARK 319 (321)
T ss_pred HHHHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999986557999999999999999 899999999999999999999 8 799999999999999999999999999876
No 5
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=4.6e-48 Score=353.33 Aligned_cols=208 Identities=63% Similarity=1.002 Sum_probs=185.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcCc----------h--------
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGA----------D-------- 93 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~~----------d-------- 93 (248)
.+.||+||||+|+||+++||+|+.+++++||+|+|+++++|++|||+|+.++.++..++++ |
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 3469999999999999999999999999999999999999999999999887666653221 1
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA 176 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVA 176 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHH
Confidence
Q ss_pred hhcCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHH
Q psy14621 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSL 173 (248)
Q Consensus 94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aI 173 (248)
+++|++|.+|++||+|||+||||||+||+++|..+++++++++|.++|+++|++|+++|.|||+|+||+|.++++|+++|
T Consensus 177 ~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ai 256 (323)
T PLN00106 177 EKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADAC 256 (323)
T ss_pred HHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHH
Confidence 88999999999999999955699999999998766777779999999999999999975468999999999999999999
Q ss_pred hcccCCCCeEEEeeEecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621 174 IQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 239 (248)
Q Consensus 174 l~~l~~~~~il~~s~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~ 239 (248)
+.+++|++.++|||+++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus 257 l~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 257 LRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred HhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 996656889999998887763349999999999999999999834999999999999999998765
No 6
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.4e-48 Score=352.38 Aligned_cols=195 Identities=22% Similarity=0.374 Sum_probs=175.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC---CCeEEEEcCc-------h---------
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES---KAHVQAFNGA-------D--------- 93 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~---~~~v~~~~~~-------d--------- 93 (248)
||+|||| |+||+++||+|+.+++++||+|+|+++ ++|++|||+|+.+ +.++++++++ |
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence 8999999 999999999999999999999999988 9999999999764 2245554332 1
Q ss_pred ------------------------------------------------------------------------------hh
Q psy14621 94 ------------------------------------------------------------------------------QL 95 (248)
Q Consensus 94 ------------------------------------------------------------------------------~~ 95 (248)
++
T Consensus 80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~ 159 (307)
T cd05290 80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADK 159 (307)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHHHHHHHHHHH
Confidence 88
Q ss_pred cCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHH
Q psy14621 96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYA 165 (248)
Q Consensus 96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a 165 (248)
++++|++|++|||||| ||||||+||+++ |+.++ ++.++++|.++++++||+|++ +||+|+|++|.+
T Consensus 160 l~v~~~~V~~~ViGeH-Gds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t~~~ia~a 235 (307)
T cd05290 160 YGVDPKNVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWTNAGIAKS 235 (307)
T ss_pred hCCCcccEEEEEEecC-CCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCeehHHHHHH
Confidence 9999999999999999 999999999997 54332 233588999999999999999 589999999999
Q ss_pred HHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621 166 GARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238 (248)
Q Consensus 166 ~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i 238 (248)
+++|+++|+. |+++++|++ +++|+|| +++|||+||++|++|+++++++ +||++|+++|++|++.|++.+
T Consensus 236 ~~~ii~ail~---d~~~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 236 ASRLIKAILL---DERSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred HHHHHHHHHh---CCCeEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 9999999998 999999998 9999998 8999999999999999999999 799999999999999999865
No 7
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=3.3e-47 Score=351.10 Aligned_cols=223 Identities=23% Similarity=0.363 Sum_probs=188.2
Q ss_pred CCCCChhhhhhhccCcccccccc-ccCCC-cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCcc
Q psy14621 6 SGGIGQPLSLLLKQSPLVDHLSL-YDINN-AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIE 81 (248)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~ 81 (248)
.|+.+ -|-+..+|.+ +-++ +..++ +||+|||| |+||+++||+|+.+++++||+|+|+++ ++|++|||+|++
T Consensus 12 ~~~~~-~~~~~~~~~~---~~~~~m~~~~~~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~ 86 (350)
T PLN02602 12 PGGLD-LSQAFFKPIH---NSSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA 86 (350)
T ss_pred cchhh-hhhhhhhccc---ccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh
Confidence 34444 4555555544 2222 43233 79999998 999999999999999999999999988 899999999997
Q ss_pred CC---CeEEEEcC------ch-----------------------------------------------------------
Q psy14621 82 SK---AHVQAFNG------AD----------------------------------------------------------- 93 (248)
Q Consensus 82 ~~---~~v~~~~~------~d----------------------------------------------------------- 93 (248)
+. .+|+...+ +|
T Consensus 87 ~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k 166 (350)
T PLN02602 87 AFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWK 166 (350)
T ss_pred hcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHH
Confidence 42 34433211 11
Q ss_pred --------------------------hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHH
Q psy14621 94 --------------------------QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLK 135 (248)
Q Consensus 94 --------------------------~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~ 135 (248)
+++++++++|+++||||| ||+|||+||+++ |+.+ +++++++
T Consensus 167 ~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~ 245 (350)
T PLN02602 167 LSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLE 245 (350)
T ss_pred HhCCCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecC-CCceEeeeeeeeECCEEHHHHhhccCCccCHHHHH
Confidence 888999999999999999 999999999996 4422 3445688
Q ss_pred HHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC---CceEEEeeEEEcCCcEE
Q psy14621 136 ALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT---EASYFSTPVHLGKNGIE 211 (248)
Q Consensus 136 ~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg---~~v~~s~Pv~lg~~Gv~ 211 (248)
++.++++++|++|++ +||+|+||+|.++++++++|++ |+++++||| +++|+|| +++|||+||++|++||+
T Consensus 246 ~i~~~v~~~g~eIi~---~KG~t~~gia~a~a~ii~ail~---d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~ 319 (350)
T PLN02602 246 EIHRAVVDSAYEVIK---LKGYTSWAIGYSVASLVRSLLR---DQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVL 319 (350)
T ss_pred HHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHh---cCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeE
Confidence 999999999999999 5899999999999999999999 999999999 9999997 58999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621 212 KNLGLGKLSDFEKELVKAAVPELKKNIAKG 241 (248)
Q Consensus 212 ~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~ 241 (248)
+++++ +||++|+++|++|++.|++.++.+
T Consensus 320 ~i~~l-~L~~~E~~~l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 320 GVVNV-HLTDEEAERLRKSAKTLWEVQSQL 348 (350)
T ss_pred EEecC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 799999999999999999988765
No 8
>KOG1495|consensus
Probab=100.00 E-value=3e-47 Score=333.44 Aligned_cols=200 Identities=25% Similarity=0.363 Sum_probs=179.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC---CeEEEE---------------cC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK---AHVQAF---------------NG 91 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~---~~v~~~---------------~~ 91 (248)
+..||+|+|+ |+||+++|+.+..+++++||+|+|+++ ++|++|||+|+.++ ++|... .|
T Consensus 19 ~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAG 97 (332)
T KOG1495|consen 19 KHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAG 97 (332)
T ss_pred cCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEecC
Confidence 3679999999 999999999999999999999999999 99999999999742 344332 11
Q ss_pred c---------h-------------------------------------------------------------------hh
Q psy14621 92 A---------D-------------------------------------------------------------------QL 95 (248)
Q Consensus 92 ~---------d-------------------------------------------------------------------~~ 95 (248)
. + ++
T Consensus 98 arq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~ 177 (332)
T KOG1495|consen 98 ARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNR 177 (332)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHHH
Confidence 1 0 89
Q ss_pred cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621 96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA 163 (248)
Q Consensus 96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA 163 (248)
|+++|+++|++||||| |||.||+||.+. ++.+ .+++.|+++.++|.+++||||++ ||+|+|++|
T Consensus 178 Lg~~pss~hgwIiGEH-GdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---KGyTswaIg 253 (332)
T KOG1495|consen 178 LGVHPSSCHGWIIGEH-GDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---KGYTSWAIG 253 (332)
T ss_pred hCCCcccceEEEeecc-CCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---cCchHHHHH
Confidence 9999999999999999 999999999996 3322 45677999999999999999996 899999999
Q ss_pred HHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621 164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240 (248)
Q Consensus 164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~ 240 (248)
.++++++++|++ |.+++.|++ .++|.|| +++|||+||++|++|+.++++. +|+++|.++|++|++.|.+..+.
T Consensus 254 lsva~l~~ail~---n~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~tl~~~q~~ 329 (332)
T KOG1495|consen 254 LSVADLAQAILR---NLRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKTLLEAQKS 329 (332)
T ss_pred HHHHHHHHHHHh---CcCceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999 9999998 6999999999999999999999 69999999999999999986543
No 9
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=9.4e-47 Score=341.84 Aligned_cols=190 Identities=30% Similarity=0.516 Sum_probs=170.6
Q ss_pred EEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcCc-------h-------------
Q psy14621 38 VAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNGA-------D------------- 93 (248)
Q Consensus 38 IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~~-------d------------- 93 (248)
|||| |+||+++||+|+.+++++||+|+|+++ ++|++|||+|+.+. .+++++.++ |
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g 79 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPG 79 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCC
Confidence 6898 999999999999999999999999988 89999999999853 234444332 1
Q ss_pred ------------------------------------------------------------------------hhcCCCCC
Q psy14621 94 ------------------------------------------------------------------------QLKGLNPT 101 (248)
Q Consensus 94 ------------------------------------------------------------------------~~l~v~p~ 101 (248)
++++++|+
T Consensus 80 ~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~ 159 (299)
T TIGR01771 80 ETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQ 159 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcC
Confidence 88899999
Q ss_pred CeeEeEEeccCCCcccccccCcc----cCCCC-------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHH
Q psy14621 102 DVNVPVIGGHAGITIIPLISQAT----PSVSF-------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFA 170 (248)
Q Consensus 102 ~V~~~ViGeHsGds~vp~wS~a~----p~~~~-------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv 170 (248)
+|++|||||| |+||||+||+++ |+.++ ++.++++|.++++++|++|++ +||+|+|++|+++++|+
T Consensus 160 ~V~~~v~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a~a~~~~i 235 (299)
T TIGR01771 160 SVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIGMAVARIV 235 (299)
T ss_pred eEEEEEEecC-CCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHHHHHHHHH
Confidence 9999999999 999999999997 55433 233578999999999999999 58999999999999999
Q ss_pred HHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy14621 171 FSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKK 236 (248)
Q Consensus 171 ~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~ 236 (248)
++|+. |+++++||| |++++|| +++|||+||+||++|+++++++ +||++|+++|++|++.||+
T Consensus 236 ~ail~---d~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 236 EAILH---DENRVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHc---CCCcEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence 99999 999999998 9999999 8999999999999999999999 7999999999999999974
No 10
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.2e-46 Score=341.20 Aligned_cols=199 Identities=24% Similarity=0.349 Sum_probs=177.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC---CeEEEEcC------ch-------
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK---AHVQAFNG------AD------- 93 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~---~~v~~~~~------~d------- 93 (248)
+.+||+|||| |+||+++||+|+.+++++||+|||+++ ++|++|||+|+.+. .+|+.+.+ +|
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG 80 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAG 80 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCC
Confidence 4579999998 999999999999999999999999988 89999999999842 24544222 11
Q ss_pred ------------------------------------------------------------------------------hh
Q psy14621 94 ------------------------------------------------------------------------------QL 95 (248)
Q Consensus 94 ------------------------------------------------------------------------------~~ 95 (248)
++
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~ 160 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAER 160 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHH
Confidence 88
Q ss_pred cCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC--------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621 96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF--------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA 163 (248)
Q Consensus 96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~--------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA 163 (248)
++++|++|+++||||| ||||||+||+++ |+.++ +++++++|.++|+++|++|++ +||+|+||+|
T Consensus 161 l~v~~~~v~~~v~GeH-G~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~a 236 (312)
T cd05293 161 LGVAPSSVHGWIIGEH-GDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGYTSWAIG 236 (312)
T ss_pred hCCChhhEEEEEeecC-CCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCCchHHHH
Confidence 8999999999999999 999999999997 54332 234588999999999999999 5899999999
Q ss_pred HHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621 164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 239 (248)
Q Consensus 164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~ 239 (248)
+++++|+++|+. |++.++|++ +++++|| +++|||+||++|++|+++++++ +||++|+++|++|++.|++.++
T Consensus 237 ~a~~~ii~ail~---d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~~~~~ 311 (312)
T cd05293 237 LSVADLVDAILR---NTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLWEVQK 311 (312)
T ss_pred HHHHHHHHHHHc---CCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 899999998 9999998 6999999999999999999999 7999999999999999998765
No 11
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-46 Score=337.46 Aligned_cols=212 Identities=58% Similarity=0.922 Sum_probs=184.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCC-chhhHhhhcCccCCCeEEEE--cC-------ch---------
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAF--NG-------AD--------- 93 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~-a~g~a~DL~~~~~~~~v~~~--~~-------~d--------- 93 (248)
|||+||||+|+||+++|+.|.. .++..||+|+|+++ ++|++|||+|......++.+ .+ .|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 6999999999999999999966 78889999999988 88999999996422333321 11 01
Q ss_pred -------------------------------------------------------------------------------h
Q psy14621 94 -------------------------------------------------------------------------------Q 94 (248)
Q Consensus 94 -------------------------------------------------------------------------------~ 94 (248)
+
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia~ 160 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAE 160 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHHH
Confidence 8
Q ss_pred hcCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHh
Q psy14621 95 LKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLI 174 (248)
Q Consensus 95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl 174 (248)
+++++|++|++||||||++|||||+||++ +-..++++++++|.++|+++||+|+++|.|||+|+||+|.++++|+++|+
T Consensus 161 ~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~ 239 (312)
T PRK05086 161 LKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239 (312)
T ss_pred HhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHH
Confidence 88999999999999999555999999999 32235666799999999999999999765679999999999999999999
Q ss_pred cccCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621 175 QGLKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247 (248)
Q Consensus 175 ~~l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~ 247 (248)
++++|+++++|++|++++ | +++|||+||++|++|+++++++++|+++|+++|++|++.|++.++.+++|+++
T Consensus 240 ~~~~~~~~v~~~~~~~~~-g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~ 312 (312)
T PRK05086 240 RALQGEQGVVECAYVEGD-GKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312 (312)
T ss_pred hcCCCCCcEEEEEEEecc-CCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 877689999998888887 7 79999999999999999999984599999999999999999999999999874
No 12
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=5e-46 Score=339.31 Aligned_cols=202 Identities=26% Similarity=0.454 Sum_probs=181.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcCc-------h-------
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNGA-------D------- 93 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~~-------d------- 93 (248)
+..+||+|||| |+||+++||+|+.+++++||+|+|+++ ++|++|||+|+.+. .++++++++ |
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 45579999999 999999999999999999999999988 89999999999742 244444332 1
Q ss_pred ------------------------------------------------------------------------------hh
Q psy14621 94 ------------------------------------------------------------------------------QL 95 (248)
Q Consensus 94 ------------------------------------------------------------------------------~~ 95 (248)
++
T Consensus 83 ~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la~~ 162 (315)
T PRK00066 83 APQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEK 162 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHHhCCCHHHEeecCchHHHHHHHHHHHHH
Confidence 78
Q ss_pred cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHH
Q psy14621 96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAY 164 (248)
Q Consensus 96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~ 164 (248)
++++|++|+++||||| |+||||+||+++ |+.+ +++++++++.++++++|++|++ +||+|+|++|+
T Consensus 163 l~v~~~~V~~~viGeH-G~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t~~~~a~ 238 (315)
T PRK00066 163 LDVDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGATYYGIAM 238 (315)
T ss_pred hCCCcccEEEEEEecC-CCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCeehHHHHH
Confidence 8999999999999999 999999999997 4422 4556788999999999999999 58999999999
Q ss_pred HHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621 165 AGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241 (248)
Q Consensus 165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~ 241 (248)
++++++++|+. |++.++|+| +++++|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.++..
T Consensus 239 ~~~~i~~ail~---~~~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 239 ALARITKAILN---NENAVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred HHHHHHHHHHc---CCCeEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 899999999 9999999 8999999999999999999999 799999999999999999988764
No 13
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=7.1e-46 Score=339.13 Aligned_cols=203 Identities=28% Similarity=0.364 Sum_probs=176.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcCc-------
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNGA------- 92 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~~------- 92 (248)
+++.||+||||+|+||+++||.|+.+++++ ||+|+|+++ ++|++|||+|++++ .++.++.++
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 356899999988999999999999999999 999999964 89999999999842 123333321
Q ss_pred h-------------------------------------------------------------------------------
Q psy14621 93 D------------------------------------------------------------------------------- 93 (248)
Q Consensus 93 d------------------------------------------------------------------------------- 93 (248)
|
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~ 160 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHN 160 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEeeHHHHH
Confidence 1
Q ss_pred -------hhcCCCCCCee-EeEEeccCCCcccccccCcc----cCCC-CChHH--HHHHHHHHhhccceeeeccCCCCch
Q psy14621 94 -------QLKGLNPTDVN-VPVIGGHAGITIIPLISQAT----PSVS-FPDDQ--LKALTGRIQEAGTEVVKAKAGAGSA 158 (248)
Q Consensus 94 -------~~l~v~p~~V~-~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~--~~~i~~~v~~~g~eIi~~k~gkgst 158 (248)
++++++|++|+ .+||||| ||||||+||+++ |+.+ ++++. +++|.++++++|++|++ +||+|
T Consensus 161 R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t 236 (323)
T TIGR01759 161 RAKYQLAAKAGVPVSDVKNVIIWGNH-SNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE---ARGAS 236 (323)
T ss_pred HHHHHHHHHhCcChHHeEEeEEEecC-CCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh---ccCCc
Confidence 88999999995 5699999 999999999997 5555 33332 78999999999999999 57899
Q ss_pred hH-HHHHHHHHHHHHHhcccCCC--CeEEEee-EecC-CCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHH
Q psy14621 159 TL-SMAYAGARFAFSLIQGLKGE--SNVIECA-YVKS-DVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAA 230 (248)
Q Consensus 159 ~~-siA~a~~~iv~aIl~~l~~~--~~il~~s-~~~g-~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~S 230 (248)
+| ++|+++++|+++|++ |+ ++++||| |++| +|| +++|||+||++|++|++++++ + +|+++|+++|++|
T Consensus 237 ~~~~~a~a~~~iv~ail~---~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~~l~~s 312 (323)
T TIGR01759 237 SAASAANAAIDHVRDWVT---GTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRGKLDAT 312 (323)
T ss_pred chHHHHHHHHHHHHHHHc---CCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHH
Confidence 99 477999999999999 87 8899999 9999 897 699999999999999999999 9 6999999999999
Q ss_pred HHHHHHHHHHH
Q psy14621 231 VPELKKNIAKG 241 (248)
Q Consensus 231 a~~I~~~i~~~ 241 (248)
++.|+++++++
T Consensus 313 a~~lk~~~~~~ 323 (323)
T TIGR01759 313 EDELLEEKEEA 323 (323)
T ss_pred HHHHHHHHhcC
Confidence 99999998753
No 14
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-45 Score=333.38 Aligned_cols=205 Identities=30% Similarity=0.518 Sum_probs=182.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC----CeEEEEcC------ch------
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK----AHVQAFNG------AD------ 93 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~----~~v~~~~~------~d------ 93 (248)
+.+||+|||| |+||+++|++++..++ .+|+|+|+++ ++|+++|++|+... .+++.+.+ +|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECC
Confidence 5679999998 9999999999999998 6799999998 78999999999642 24443222 11
Q ss_pred -------------------------------------------------------------------------------h
Q psy14621 94 -------------------------------------------------------------------------------Q 94 (248)
Q Consensus 94 -------------------------------------------------------------------------------~ 94 (248)
+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~lds~R~~~~la~ 161 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAE 161 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHHHHHHHHHHHH
Confidence 7
Q ss_pred hcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHH
Q psy14621 95 LKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAY 164 (248)
Q Consensus 95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~ 164 (248)
+++++|++|+++|+||| |++|||+||+++ |+.+ +++++++++.++++++|++|++++ |||+|+||+|+
T Consensus 162 ~l~v~~~~v~~~viGeH-g~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~~~~a~ 239 (319)
T PTZ00117 162 KLGVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAFFAPAA 239 (319)
T ss_pred HhCCCcccceEEEeecC-CCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHH
Confidence 88999999999999999 999999999996 5432 456678999999999999999976 79999999999
Q ss_pred HHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621 165 AGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE 242 (248)
Q Consensus 165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l 242 (248)
++++|+++|+. |+++++|+| |++|+|| +++|||+||++|++||++++++ +|+++|+++|++|++.|++.++++.
T Consensus 240 a~~~~~~ail~---~~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~~~~~~~ 315 (319)
T PTZ00117 240 AIVAMIEAYLK---DEKRVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQELTQKAK 315 (319)
T ss_pred HHHHHHHHHhc---CCCeEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999 9999999 8999999999999999999999 7999999999999999999998876
Q ss_pred hh
Q psy14621 243 EF 244 (248)
Q Consensus 243 ~~ 244 (248)
.+
T Consensus 316 ~~ 317 (319)
T PTZ00117 316 AL 317 (319)
T ss_pred Hh
Confidence 54
No 15
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=3.3e-45 Score=345.45 Aligned_cols=211 Identities=23% Similarity=0.236 Sum_probs=183.9
Q ss_pred cCCCcEEEEEcCCCccHHHHHHHHHhC-------CCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcCch-----
Q psy14621 30 DINNAKVMVAGASGGIGQPLSLLLKQS-------PLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNGAD----- 93 (248)
Q Consensus 30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~-------~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~~d----- 93 (248)
.++..||+||||+|+||+++||.|+++ ++++||+|+|+++ ++|++|||+|+.++ .+|.+.++++
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd 176 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD 176 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc
Confidence 455689999999999999999999999 8888999999999 99999999999843 3555444321
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtgT~LDs 256 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDE 256 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcceEEeeccHHH
Confidence
Q ss_pred --------hhcCCCCCCe-eEeEEeccCCCcccccccCcc----cCCCC-ChHH--HHHHHHHHhhccceeeeccCCCCc
Q psy14621 94 --------QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT----PSVSF-PDDQ--LKALTGRIQEAGTEVVKAKAGAGS 157 (248)
Q Consensus 94 --------~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~----p~~~~-~~~~--~~~i~~~v~~~g~eIi~~k~gkgs 157 (248)
++++|+|++| ++|||||| ||||||+||+++ |+.++ ++.+ +++|.++++++|++|++ +||+
T Consensus 257 aR~r~~LA~~l~V~~~~V~~~~V~GeH-Gdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~---~kG~ 332 (444)
T PLN00112 257 NRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK---KWGR 332 (444)
T ss_pred HHHHHHHHHHhCcCHHHcccceEEecC-CCceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh---ccCc
Confidence 8899999999 56999999 999999999997 55443 2222 78999999999999999 5787
Q ss_pred hhH-HHHHHHHHHHHHHhcccCCCCeEEEee-EecCC-CC--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHHHHHHHH
Q psy14621 158 ATL-SMAYAGARFAFSLIQGLKGESNVIECA-YVKSD-VT--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKELVKAAV 231 (248)
Q Consensus 158 t~~-siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~-yg--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~~L~~Sa 231 (248)
|+| ++|.++++++++|+.+. |+++++||| |++|+ || +++|||+||++|++|+++++ ++ +|+++|+++|++|+
T Consensus 333 t~~~s~a~ai~~~I~ail~~~-d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~~~l~~Sa 410 (444)
T PLN00112 333 SSAASTAVSIADAIKSLVTPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLRERIKKSE 410 (444)
T ss_pred hhHHHHHHHHHHHHHHHHcCC-CCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHHHHHHHHH
Confidence 777 99999999999999321 899999999 99994 98 79999999999999999999 69 69999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy14621 232 PELKKNIAKGEEFVA 246 (248)
Q Consensus 232 ~~I~~~i~~~l~~~~ 246 (248)
++|+++.+.+..++.
T Consensus 411 ~~L~~e~~~~~~~~~ 425 (444)
T PLN00112 411 AELLAEKRCVAHLTG 425 (444)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877664
No 16
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=4e-45 Score=334.57 Aligned_cols=204 Identities=23% Similarity=0.336 Sum_probs=178.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcCc-------h
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNGA-------D 93 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~~-------d 93 (248)
+++||+||||+|+||+++||.|..+++++ ||+|+|+++ ++|++|||+|++++ .++++++++ |
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 56799999988999999999999999999 999999954 79999999999832 234444332 1
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 83 iVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~R 162 (326)
T PRK05442 83 VALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNR 162 (326)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEeeeHHHHHH
Confidence
Q ss_pred ------hhcCCCCCCeeEeE-EeccCCCcccccccCcc----cCCCC-ChH--HHHHHHHHHhhccceeeeccCCCCchh
Q psy14621 94 ------QLKGLNPTDVNVPV-IGGHAGITIIPLISQAT----PSVSF-PDD--QLKALTGRIQEAGTEVVKAKAGAGSAT 159 (248)
Q Consensus 94 ------~~l~v~p~~V~~~V-iGeHsGds~vp~wS~a~----p~~~~-~~~--~~~~i~~~v~~~g~eIi~~k~gkgst~ 159 (248)
++++++|++|++|+ |||| ||||||+||+++ |+.++ +++ .+++|.++++++|++|++ +||+|+
T Consensus 163 ~r~~la~~l~v~~~~V~~~vV~GeH-G~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~ 238 (326)
T PRK05442 163 ALSQLAAKAGVPVADIKKMTVWGNH-SATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE---ARGASS 238 (326)
T ss_pred HHHHHHHHhCcChHHeEEeEEEECC-cCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh---CcCCcc
Confidence 88999999999965 8999 999999999997 66553 333 377899999999999999 589999
Q ss_pred HHHHHH-HHHHHHHHhcccCC--CCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHH
Q psy14621 160 LSMAYA-GARFAFSLIQGLKG--ESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVP 232 (248)
Q Consensus 160 ~siA~a-~~~iv~aIl~~l~~--~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~ 232 (248)
|++|.+ +++|+++|+. | +++++||| +++|+|| +++|||+||++| +|+++++. + +|+++|+++|++|++
T Consensus 239 ~~~a~~~~~~iv~ail~---~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~~s~~ 313 (326)
T PRK05442 239 AASAANAAIDHVRDWVL---GTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKIDATLA 313 (326)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHHHHHH
Confidence 999999 5999999999 7 78999999 9999998 699999999999 99999965 8 799999999999999
Q ss_pred HHHHHHHHHhhh
Q psy14621 233 ELKKNIAKGEEF 244 (248)
Q Consensus 233 ~I~~~i~~~l~~ 244 (248)
.|+++.+.+...
T Consensus 314 ~l~~~~~~~~~~ 325 (326)
T PRK05442 314 ELEEERDAVKHL 325 (326)
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
No 17
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-45 Score=332.73 Aligned_cols=201 Identities=30% Similarity=0.523 Sum_probs=178.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch------
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD------ 93 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d------ 93 (248)
+.+||+|||| |+||+++|+.++.+++. +|+|+|+++ ++|+++|+.|+.. +.+|+.+.+ +|
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTA 82 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECC
Confidence 4579999998 99999999999999984 599999998 8899999999853 234443221 01
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~lds~R~~ 162 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLR 162 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCcccHHHHH
Confidence
Q ss_pred ----hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchh
Q psy14621 94 ----QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSAT 159 (248)
Q Consensus 94 ----~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~ 159 (248)
++++++|++|+++|+||| |+||||+||+++ |+.+ ++++++++|.++++++|++|++++ |||+|+
T Consensus 163 ~~la~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-gkg~t~ 240 (321)
T PTZ00082 163 TYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-GTGSAY 240 (321)
T ss_pred HHHHHHhCCCcccceeeEEecC-CCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-CCCccH
Confidence 788999999999999999 999999999997 5432 456668999999999999999986 789999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy14621 160 LSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKN 237 (248)
Q Consensus 160 ~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~ 237 (248)
||||.++++|+++|+. |+++++||| +++++|| +++|||+||+||++||++++++ +||++|+++|++|++.|++.
T Consensus 241 ~~ia~a~~~i~~ail~---d~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa~~i~~~ 316 (321)
T PTZ00082 241 FAPAAAAIEMAEAYLK---DKKRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESIKEVKRL 316 (321)
T ss_pred HHHHHHHHHHHHHHHc---CCCcEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999 9999999 8999999999999999999999 79999999999999999987
Q ss_pred HHH
Q psy14621 238 IAK 240 (248)
Q Consensus 238 i~~ 240 (248)
++.
T Consensus 317 ~~~ 319 (321)
T PTZ00082 317 EAL 319 (321)
T ss_pred Hhh
Confidence 653
No 18
>KOG1494|consensus
Probab=100.00 E-value=2.3e-44 Score=316.61 Aligned_cols=226 Identities=63% Similarity=0.964 Sum_probs=213.3
Q ss_pred cccccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcCch--------
Q psy14621 22 LVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGAD-------- 93 (248)
Q Consensus 22 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~~d-------- 93 (248)
.+|.|+....+..||+|.||+|.||+.++++|+++++++||.|||+..+.|.+.||+|+.++..|+.|.+++
T Consensus 17 ~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~ 96 (345)
T KOG1494|consen 17 PKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKG 96 (345)
T ss_pred CcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcC
Confidence 466799999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 97 advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtL 176 (345)
T KOG1494|consen 97 ADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 176 (345)
T ss_pred CCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehh
Confidence
Q ss_pred ----------hhcCCCC-CCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621 94 ----------QLKGLNP-TDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM 162 (248)
Q Consensus 94 ----------~~l~v~p-~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si 162 (248)
+.++++| ++++++|||+|+|.|.+|++|+..|...+++++++.+++|++++|.||+++|+|+||+++|+
T Consensus 177 DvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSM 256 (345)
T KOG1494|consen 177 DVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSM 256 (345)
T ss_pred hhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhH
Confidence 7779999 55999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEeeEecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621 163 AYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE 242 (248)
Q Consensus 163 A~a~~~iv~aIl~~l~~~~~il~~s~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l 242 (248)
|+|.++++.+.+++|+++..++.|+|+.....+--||+.|+++|++||+++.++++||++|++.|+.+..+||+.++++.
T Consensus 257 AyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KGv 336 (345)
T KOG1494|consen 257 AYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKGV 336 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999887744678999999999999999999989999999999999999999999999
Q ss_pred hhhhc
Q psy14621 243 EFVAK 247 (248)
Q Consensus 243 ~~~~~ 247 (248)
+|.+.
T Consensus 337 ~F~~~ 341 (345)
T KOG1494|consen 337 TFVKS 341 (345)
T ss_pred HHHhh
Confidence 99874
No 19
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=2.4e-44 Score=326.94 Aligned_cols=200 Identities=29% Similarity=0.472 Sum_probs=178.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch-------
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD------- 93 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d------- 93 (248)
.+||+|||+ |+||+.+|+.++.++++ +++|+|+++ ++|+++|+.|... ..+++.+.+ +|
T Consensus 1 ~~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag 78 (305)
T TIGR01763 1 RKKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAG 78 (305)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCC
Confidence 369999999 99999999999999988 799999988 7899999999753 234543222 11
Q ss_pred ------------------------------------------------------------------------------hh
Q psy14621 94 ------------------------------------------------------------------------------QL 95 (248)
Q Consensus 94 ------------------------------------------------------------------------------~~ 95 (248)
++
T Consensus 79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~lds~R~~~~la~~ 158 (305)
T TIGR01763 79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAME 158 (305)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchHHHHHHHHHHHH
Confidence 88
Q ss_pred cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHH
Q psy14621 96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFA 170 (248)
Q Consensus 96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv 170 (248)
++++|++|++|||||| ||||||+||+++ |+.+ ++++.+++|.++++++|++|+++| |||+|+||+|+++++|+
T Consensus 159 l~v~~~~v~~~v~GeH-g~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~~~~i~ 236 (305)
T TIGR01763 159 LGVSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAASVVEMV 236 (305)
T ss_pred hCcCHHHeeeeEEecC-CCcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHH
Confidence 8999999999999999 999999999997 6544 345558999999999999999986 78999999999999999
Q ss_pred HHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621 171 FSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240 (248)
Q Consensus 171 ~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~ 240 (248)
++|+. |+++++|+| +++++|| +++|||+||++|++||++++++ +|+++|+++|++|++.|++.++.
T Consensus 237 ~ai~~---~~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~~ 304 (305)
T TIGR01763 237 EAILK---DRKRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCKM 304 (305)
T ss_pred HHHhC---CCCeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999 999999999 9999999 8999999999999999999999 79999999999999999988753
No 20
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.3e-44 Score=325.56 Aligned_cols=198 Identities=26% Similarity=0.418 Sum_probs=175.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcCc-------h----------
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNGA-------D---------- 93 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~~-------d---------- 93 (248)
|||+|||+ |.||+++|+.|+.+++++|++|+|+++ ++|+++||+|+.+. .+..+++++ |
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCC
Confidence 69999999 999999999999999999999999988 88999999998632 111222111 1
Q ss_pred ---------------------------------------------------------------------------hhcCC
Q psy14621 94 ---------------------------------------------------------------------------QLKGL 98 (248)
Q Consensus 94 ---------------------------------------------------------------------------~~l~v 98 (248)
+++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~~~v 159 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGV 159 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchhhHHHHHHHHHHHhCC
Confidence 88899
Q ss_pred CCCCeeEeEEeccCCCcccccccCcc----cCC--------CCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621 99 NPTDVNVPVIGGHAGITIIPLISQAT----PSV--------SFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG 166 (248)
Q Consensus 99 ~p~~V~~~ViGeHsGds~vp~wS~a~----p~~--------~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~ 166 (248)
+|++|++|||||| ||||||+||+++ |+. .++++++++|.++++++|++|++ +||+|+|++|+++
T Consensus 160 ~~~~v~~~viGeH-g~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~~~~a~a~ 235 (308)
T cd05292 160 DPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATYYAIGLAL 235 (308)
T ss_pred CccceeceeeccC-CCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHHHH
Confidence 9999999999999 999999999997 442 23445688999999999999999 5799999999999
Q ss_pred HHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621 167 ARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240 (248)
Q Consensus 167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~ 240 (248)
++|+++|+. |+++++||| +++++|| +++|||+||+||++||++++++ +||++|+++|++|++.|++.++.
T Consensus 236 ~~i~~ail~---~~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~~~~ 307 (308)
T cd05292 236 ARIVEAILR---DENSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEAIES 307 (308)
T ss_pred HHHHHHHHc---CCCcEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999998 9999999 8999999999999999999999 79999999999999999988763
No 21
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=2.5e-44 Score=334.80 Aligned_cols=211 Identities=24% Similarity=0.266 Sum_probs=181.4
Q ss_pred ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEE--ecCC--chhhHhhhcCccCC--CeEEEEcCc-----
Q psy14621 29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLY--DIVH--TPGVAADLSHIESK--AHVQAFNGA----- 92 (248)
Q Consensus 29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLi--Di~~--a~g~a~DL~~~~~~--~~v~~~~~~----- 92 (248)
.++++.||+||||+|+||+++||.|+.+++++ +|+|+ |+++ ++|++|||+|++++ .++.+++++
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k 119 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE 119 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 44456899999999999999999999999999 56666 7777 99999999999832 355544432
Q ss_pred --h-----------------------------------------------------------------------------
Q psy14621 93 --D----------------------------------------------------------------------------- 93 (248)
Q Consensus 93 --d----------------------------------------------------------------------------- 93 (248)
|
T Consensus 120 daDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LD 199 (387)
T TIGR01757 120 DADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLD 199 (387)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhH
Confidence 1
Q ss_pred ---------hhcCCCCCCe-eEeEEeccCCCcccccccCcc----cCCCC-ChH--HHHHHHHHHhhccceeeeccCCCC
Q psy14621 94 ---------QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT----PSVSF-PDD--QLKALTGRIQEAGTEVVKAKAGAG 156 (248)
Q Consensus 94 ---------~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~----p~~~~-~~~--~~~~i~~~v~~~g~eIi~~k~gkg 156 (248)
++++++|++| ++|||||| ||||||+||+++ |+.++ ++. .+++|.++++++|++|++ +||
T Consensus 200 saR~r~~LA~~l~v~~~~V~~~~V~GeH-Gds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~---~KG 275 (387)
T TIGR01757 200 ENRAKCQLALKSGKFYTSVSNVTIWGNH-STTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK---KWG 275 (387)
T ss_pred HHHHHHHHHHHHCcChhHcceeEEEecC-CCcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh---ccC
Confidence 8899999999 59999999 999999999997 66553 222 378999999999999999 577
Q ss_pred chhH-HHHHHHHHHHHHHhcccCCCCeEEEee-EecCC-CC--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHHHHHHH
Q psy14621 157 SATL-SMAYAGARFAFSLIQGLKGESNVIECA-YVKSD-VT--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKELVKAA 230 (248)
Q Consensus 157 st~~-siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~-yg--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~~L~~S 230 (248)
+|+| ++|.++++++++|+.|. |+++++|+| +++|+ || +++|||+||++|++|+++++ ++ +|+++|+++|++|
T Consensus 276 ~t~~~s~a~ai~~~i~ai~~g~-d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~~l~~S 353 (387)
T TIGR01757 276 RSSAASTAVSIADAIKSLVVPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRERIRKS 353 (387)
T ss_pred chhHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHHHHHHH
Confidence 7777 99999999999999321 889999999 99996 98 79999999999999999996 99 6999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy14621 231 VPELKKNIAKGEEFV 245 (248)
Q Consensus 231 a~~I~~~i~~~l~~~ 245 (248)
++.|+++.+.+++.+
T Consensus 354 a~~L~~e~~~~~~~~ 368 (387)
T TIGR01757 354 EDELLKEKECVAHLI 368 (387)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
No 22
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.6e-44 Score=325.10 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=177.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcCc-------h-
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNGA-------D- 93 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~~-------d- 93 (248)
++||+||||+|+||+++||.|+++++++ ||+|+|+++ ++|++|||+|++++ .++.+++++ |
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 5799999988999999999999999999 999999954 79999999999842 234444332 1
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~t~LDs~Rl 161 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRA 161 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEehHHHHHHH
Confidence
Q ss_pred -----hhcCCCCCCeeEe-EEeccCCCcccccccCcc----cCCC-CChH--HHHHHHHHHhhccceeeeccCCCCchhH
Q psy14621 94 -----QLKGLNPTDVNVP-VIGGHAGITIIPLISQAT----PSVS-FPDD--QLKALTGRIQEAGTEVVKAKAGAGSATL 160 (248)
Q Consensus 94 -----~~l~v~p~~V~~~-ViGeHsGds~vp~wS~a~----p~~~-~~~~--~~~~i~~~v~~~g~eIi~~k~gkgst~~ 160 (248)
+++++++++|++| ||||| |++|||+||+++ |+.+ +.+. .+++|.++++++|++|++ +||+|+|
T Consensus 162 ~~~la~~lgv~~~~v~~~~V~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~~ 237 (322)
T cd01338 162 KSQLAKKAGVPVTDVKNMVIWGNH-SPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK---ARGASSA 237 (322)
T ss_pred HHHHHHHhCcChhHeEEEEEEeCC-cccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---CcCCccH
Confidence 8889999999985 58999 899999999997 5544 3443 378999999999999999 5899999
Q ss_pred HHH-HHHHHHHHHHhcccCCC--CeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q psy14621 161 SMA-YAGARFAFSLIQGLKGE--SNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPEL 234 (248)
Q Consensus 161 siA-~a~~~iv~aIl~~l~~~--~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I 234 (248)
++| +++++|+++|+. |+ ++++||| +++|+|| +++|||+||++|++||++++++ +||++|+++|++|++.|
T Consensus 238 ~~~a~a~~~iv~ail~---~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~l 313 (322)
T cd01338 238 ASAANAAIDHMRDWVL---GTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDATLAEL 313 (322)
T ss_pred HHHHHHHHHHHHHHhc---CCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHHHHHHH
Confidence 999 599999999999 77 5999999 9999998 6999999999999999999999 69999999999999999
Q ss_pred HHHHHHHh
Q psy14621 235 KKNIAKGE 242 (248)
Q Consensus 235 ~~~i~~~l 242 (248)
+++.+++.
T Consensus 314 ~~~~~~~~ 321 (322)
T cd01338 314 LEEREAVK 321 (322)
T ss_pred HHHHHHhh
Confidence 99987753
No 23
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=2.5e-43 Score=320.13 Aligned_cols=197 Identities=27% Similarity=0.463 Sum_probs=175.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcCc-------h---------
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNGA-------D--------- 93 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~~-------d--------- 93 (248)
+||+|||+ |+||+++|+.|+.+++++||+|+|+++ ++|+++||+|+.+. ..+.++.++ |
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 49999998 999999999999999999999999988 89999999998642 222222211 1
Q ss_pred ----------------------------------------------------------------------------hhcC
Q psy14621 94 ----------------------------------------------------------------------------QLKG 97 (248)
Q Consensus 94 ----------------------------------------------------------------------------~~l~ 97 (248)
++++
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~ 159 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLN 159 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHC
Confidence 8889
Q ss_pred CCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHH
Q psy14621 98 LNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGA 167 (248)
Q Consensus 98 v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~ 167 (248)
++|++|++|||||| |+||||+||+++ |+.+ +.+++++++.++++++|++|++ +||+|+|++|.|++
T Consensus 160 v~~~~v~~~V~G~H-g~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~~~a~a~~ 235 (306)
T cd05291 160 VDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYYGIATALA 235 (306)
T ss_pred CCcccceEEEEecC-CCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHHHHHHHHH
Confidence 99999999999999 999999999997 5432 3355689999999999999999 58999999999999
Q ss_pred HHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621 168 RFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 239 (248)
Q Consensus 168 ~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~ 239 (248)
+++++|+. |+++++|+| +++++|| +++|||+||++|++||++++++ +|+++|+++|++|+++|++.++
T Consensus 236 ~~~~ail~---~~~~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 236 RIVKAILN---DENAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred HHHHHHHc---CCCEEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999 999999999 9999999 8999999999999999999999 7999999999999999998765
No 24
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2.1e-43 Score=320.05 Aligned_cols=194 Identities=25% Similarity=0.381 Sum_probs=173.9
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC---CeEEEEcC------ch-----------
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK---AHVQAFNG------AD----------- 93 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~---~~v~~~~~------~d----------- 93 (248)
|+|||+ |+||+++|++|+.+++++||+|+|+++ ++|+++||+|+.++ .++....+ +|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCC
Confidence 689999 999999999999999999999999988 89999999999864 23332111 11
Q ss_pred --------------------------------------------------------------------------hhcCCC
Q psy14621 94 --------------------------------------------------------------------------QLKGLN 99 (248)
Q Consensus 94 --------------------------------------------------------------------------~~l~v~ 99 (248)
++++++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~ 159 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVD 159 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCC
Confidence 788999
Q ss_pred CCCeeEeEEeccCCCcccccccCcc----cCCCC---ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHH
Q psy14621 100 PTDVNVPVIGGHAGITIIPLISQAT----PSVSF---PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFS 172 (248)
Q Consensus 100 p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~---~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~a 172 (248)
|++|+++|+||| |++|||+||+++ |+.++ +++.+++|.+++++++++|++ +||+|+|++|.++++++++
T Consensus 160 ~~~v~~~viGeH-g~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~~~~~~a 235 (300)
T cd00300 160 PQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAIADIVKS 235 (300)
T ss_pred cccEEEEEEecc-CCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHHHHHHHH
Confidence 999999999999 999999999997 65442 345688999999999999999 5899999999999999999
Q ss_pred HhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621 173 LIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238 (248)
Q Consensus 173 Il~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i 238 (248)
|+. |+++++|+| +++++|| +++|||+||++|++|+++++++ +||++|+++|++|++.|++.+
T Consensus 236 i~~---~~~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 236 ILL---DERRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHc---CCCeEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999 899999999 9999999 8999999999999999999999 799999999999999999765
No 25
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.7e-43 Score=322.27 Aligned_cols=200 Identities=26% Similarity=0.346 Sum_probs=174.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcce-----EEEEecCC----chhhHhhhcCccCC--CeEEEEcCc-------h---
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDH-----LSLYDIVH----TPGVAADLSHIESK--AHVQAFNGA-------D--- 93 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~e-----lvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~~-------d--- 93 (248)
||+||||+|+||+++|+.|+++++++| |+|+|+++ ++|+++||+|++++ ..+.++.+. |
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 899999999999999999999999995 99999985 89999999999632 112222111 1
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~t~LDs~R~r~ 161 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKA 161 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEeeHHHHHHHHH
Confidence
Q ss_pred ---hhcCCCCCCe-eEeEEeccCCCcccccccCcc----cCCC-----CChH-HHHHHHHHHhhccceeeeccCCCCchh
Q psy14621 94 ---QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT----PSVS-----FPDD-QLKALTGRIQEAGTEVVKAKAGAGSAT 159 (248)
Q Consensus 94 ---~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~----p~~~-----~~~~-~~~~i~~~v~~~g~eIi~~k~gkgst~ 159 (248)
++++++|++| +++||||| |++|||+||+++ |+.+ ++++ ..++|.+++++++++|++ +||+|+
T Consensus 162 ~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~---~kg~t~ 237 (323)
T cd00704 162 QVARKLGVRVSDVKNVIIWGNH-SNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK---KRGASS 237 (323)
T ss_pred HHHHHhCcCHHHceeeeEEecc-cCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh---ccCcch
Confidence 8899999999 56999999 999999999997 5433 3333 377899999999999999 578999
Q ss_pred HH-HHHHHHHHHHHHhcccCCCC--eEEEee-EecCCC-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHH
Q psy14621 160 LS-MAYAGARFAFSLIQGLKGES--NVIECA-YVKSDV-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVP 232 (248)
Q Consensus 160 ~s-iA~a~~~iv~aIl~~l~~~~--~il~~s-~~~g~y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~ 232 (248)
|+ +|+++++|+++|++ |++ +++||| |++|+| | +++|||+||++|++||++++++ +|+++|+++|++|++
T Consensus 238 ~~~~a~a~~~iv~ail~---~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~ 313 (323)
T cd00704 238 AASAAKAIADHVKDWLF---GTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREKLKATEE 313 (323)
T ss_pred hHHHHHHHHHHHHHHHh---CCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHHHHHHHH
Confidence 97 69999999999999 888 999998 999999 8 6899999999999999999999 699999999999999
Q ss_pred HHHHHHHHHh
Q psy14621 233 ELKKNIAKGE 242 (248)
Q Consensus 233 ~I~~~i~~~l 242 (248)
.|+++.+.++
T Consensus 314 ~l~~~~~~~~ 323 (323)
T cd00704 314 ELIEEKEIAL 323 (323)
T ss_pred HHHHHHHhhC
Confidence 9999998774
No 26
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.3e-43 Score=320.64 Aligned_cols=203 Identities=26% Similarity=0.315 Sum_probs=174.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcC-------ch-
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNG-------AD- 93 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~-------~d- 93 (248)
+.||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||.|++++ .++....+ .|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 4699999999999999999999999986 999999965 78999999998631 12221111 11
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R~ 161 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRA 161 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHHH
Confidence
Q ss_pred -----hhcCCCCCCeeE-eEEeccCCCcccccccCccc--------CCCC-ChH--HHHHHHHHHhhccceeeeccCCCC
Q psy14621 94 -----QLKGLNPTDVNV-PVIGGHAGITIIPLISQATP--------SVSF-PDD--QLKALTGRIQEAGTEVVKAKAGAG 156 (248)
Q Consensus 94 -----~~l~v~p~~V~~-~ViGeHsGds~vp~wS~a~p--------~~~~-~~~--~~~~i~~~v~~~g~eIi~~k~gkg 156 (248)
++++++|++|+. +||||| |+||||+||+++. +.++ +++ .+++|.++++++|++|++++ ||
T Consensus 162 r~~la~~l~v~~~~v~~~~V~GeH-G~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~--~g 238 (325)
T cd01336 162 KSQIALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKAR--KL 238 (325)
T ss_pred HHHHHHHhCcChhhceEeEEEEcC-CCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHcc--cc
Confidence 889999999975 599999 9999999999863 3332 222 26899999999999999963 78
Q ss_pred chhHHHHHHHHHHHHHHhcccCCC--CeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHH
Q psy14621 157 SATLSMAYAGARFAFSLIQGLKGE--SNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAV 231 (248)
Q Consensus 157 st~~siA~a~~~iv~aIl~~l~~~--~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa 231 (248)
+|+||+|.++++++++|+. |+ ++++||| +++|+|| +++|||+||++|++||++++++ +||++|+++|++|+
T Consensus 239 ~t~~~~a~~~~~i~~ail~---~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~ 314 (325)
T cd01336 239 SSAMSAAKAICDHVHDWWF---GTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSREKIDATA 314 (325)
T ss_pred chHHHHHHHHHHHHHHHHc---CCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHH
Confidence 9999999999999999999 74 8999999 9999998 6999999999999999999999 69999999999999
Q ss_pred HHHHHHHHHHh
Q psy14621 232 PELKKNIAKGE 242 (248)
Q Consensus 232 ~~I~~~i~~~l 242 (248)
+.|+++++.++
T Consensus 315 ~~l~~e~~~~~ 325 (325)
T cd01336 315 KELVEEKETAL 325 (325)
T ss_pred HHHHHHHHhhC
Confidence 99999998764
No 27
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=2.7e-42 Score=315.83 Aligned_cols=203 Identities=24% Similarity=0.320 Sum_probs=172.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcC-------ch---
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNG-------AD--- 93 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~-------~d--- 93 (248)
||+||||+|+||+++|+.|+.+++++ ||+|+|+++ ++|++|||+|++++ .++...++ .|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999999999999999999999996 799999954 78999999999832 22221111 01
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence
Q ss_pred ---hhcCCCCCCee-EeEEeccCCCcccccccCcccC--------CC-CChH--HHHHHHHHHhhccceeeeccCCCCch
Q psy14621 94 ---QLKGLNPTDVN-VPVIGGHAGITIIPLISQATPS--------VS-FPDD--QLKALTGRIQEAGTEVVKAKAGAGSA 158 (248)
Q Consensus 94 ---~~l~v~p~~V~-~~ViGeHsGds~vp~wS~a~p~--------~~-~~~~--~~~~i~~~v~~~g~eIi~~k~gkgst 158 (248)
++++++|++|+ +|||||| |+||||+||+++.- .+ ++++ ++++|.++++++|++|+++| +|+|
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k--~~~t 237 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNH-SSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR--KLSS 237 (324)
T ss_pred HHHHHhCCChhhceEeEEEECC-CCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc--CCCH
Confidence 89999999996 6999999 99999999999633 22 2222 26889999999999999963 5699
Q ss_pred hHHHHHHHHHHHHHHhcccCCCCeEEEee-EecCC-CC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q psy14621 159 TLSMAYAGARFAFSLIQGLKGESNVIECA-YVKSD-VT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPEL 234 (248)
Q Consensus 159 ~~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~-yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I 234 (248)
+|++|.++++++++|+.+. |+++++||| +++|+ || +++|||+||++|++|++.+.++ +|+++|+++|++|++.|
T Consensus 238 ~~~ia~~~~~i~~ai~~~~-~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~s~~~l 315 (324)
T TIGR01758 238 ALSAAKAAVDQMHDWVLGT-PEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLALTAKEL 315 (324)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHHHHHHH
Confidence 9999999999999999321 889999999 99999 98 6999999999998888888789 69999999999999999
Q ss_pred HHHHHHHh
Q psy14621 235 KKNIAKGE 242 (248)
Q Consensus 235 ~~~i~~~l 242 (248)
++.++.++
T Consensus 316 k~~~~~~~ 323 (324)
T TIGR01758 316 EEERDEAL 323 (324)
T ss_pred HHHHHHhh
Confidence 99998874
No 28
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=6.1e-41 Score=303.46 Aligned_cols=195 Identities=32% Similarity=0.527 Sum_probs=174.4
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch----------
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD---------- 93 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d---------- 93 (248)
|+|||| |+||+.+|+.|+.++++ |++|+|+++ ++|+++|+.|... ..+++.+.+ +|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~p~ 78 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPR 78 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCCCC
Confidence 689999 99999999999999998 999999998 7899999999753 224443222 11
Q ss_pred ---------------------------------------------------------------------------hhcCC
Q psy14621 94 ---------------------------------------------------------------------------QLKGL 98 (248)
Q Consensus 94 ---------------------------------------------------------------------------~~l~v 98 (248)
+++++
T Consensus 79 ~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la~~l~v 158 (300)
T cd01339 79 KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGV 158 (300)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHHHHhCC
Confidence 78899
Q ss_pred CCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHH
Q psy14621 99 NPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSL 173 (248)
Q Consensus 99 ~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aI 173 (248)
+|++|+++|+||| |++|||+||+++ |+.+ ++++.++++.+++++++++|++.| |||+|+|++|.++++|+++|
T Consensus 159 ~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~~i~~ai 236 (300)
T cd01339 159 SVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIAEMVEAI 236 (300)
T ss_pred CccceEEEEEeCC-CCcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHH
Confidence 9999999999999 999999999997 5544 445568999999999999999986 67999999999999999999
Q ss_pred hcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621 174 IQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238 (248)
Q Consensus 174 l~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i 238 (248)
+. |++.++|+| +++++|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.+
T Consensus 237 l~---~~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 237 LK---DKKRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred Hc---CCCcEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 99 999999999 9999999 8999999999999999999999 799999999999999999865
No 29
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.6e-40 Score=302.33 Aligned_cols=199 Identities=25% Similarity=0.439 Sum_probs=174.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC----chhhHhhhcCccC--C--CeEEEEcC------ch------
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH----TPGVAADLSHIES--K--AHVQAFNG------AD------ 93 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~----a~g~a~DL~~~~~--~--~~v~~~~~------~d------ 93 (248)
|||+||||+|+||+++|+.|+.+++++||+|+|+++ ++|+++||+|+.. + .++...++ .|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViita 80 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA 80 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEec
Confidence 699999988999999999999999999999999954 7999999999743 2 23332211 11
Q ss_pred -------------------------------------------------------------------------------h
Q psy14621 94 -------------------------------------------------------------------------------Q 94 (248)
Q Consensus 94 -------------------------------------------------------------------------------~ 94 (248)
+
T Consensus 81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~LDs~R~~~~la~ 160 (309)
T cd05294 81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAK 160 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchHHHHHHHHHHHH
Confidence 8
Q ss_pred hcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC---ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHH
Q psy14621 95 LKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF---PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGA 167 (248)
Q Consensus 95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~---~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~ 167 (248)
+++++|++|+++|+||| ||||||+||+++ |+.++ .++.+++|.++++++|++|++ +||+|+||+|.+++
T Consensus 161 ~l~v~~~~v~~~viGeH-g~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~---~kg~t~~~~a~~~~ 236 (309)
T cd05294 161 HFNVHISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIIS---LKGGSEYGPASAIS 236 (309)
T ss_pred HHCcChHHeEEEEEecC-CCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---hcCCchhhHHHHHH
Confidence 88999999999999999 999999999997 55332 245688999999999999999 47889999999999
Q ss_pred HHHHHHhcccCCCCeEEEee-EecCCC-C-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621 168 RFAFSLIQGLKGESNVIECA-YVKSDV-T-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240 (248)
Q Consensus 168 ~iv~aIl~~l~~~~~il~~s-~~~g~y-g-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~ 240 (248)
+++++|+. |++.++|++ +.+|+| + +++|+|+||++|++||++++++ +||++|+++|++|++.|++.++.
T Consensus 237 ~ii~ail~---~~~~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~~~ 308 (309)
T cd05294 237 NLVRTIAN---DERRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYTRE 308 (309)
T ss_pred HHHHHHHC---CCCeEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 999999998 899998 6 7999999999999999999999 69999999999999999987653
No 30
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=1e-39 Score=295.76 Aligned_cols=201 Identities=30% Similarity=0.507 Sum_probs=178.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC----CeEEEEcC------ch-------
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK----AHVQAFNG------AD------- 93 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~----~~v~~~~~------~d------- 93 (248)
++||+|||| |+||+++|+.++..++. |++|+|+++ ++|+++|++|.... .+++.+.+ +|
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCC
Confidence 479999999 99999999999999988 999999988 88999999998531 24432221 11
Q ss_pred ------------------------------------------------------------------------------hh
Q psy14621 94 ------------------------------------------------------------------------------QL 95 (248)
Q Consensus 94 ------------------------------------------------------------------------------~~ 95 (248)
++
T Consensus 80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~la~~ 159 (307)
T PRK06223 80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEE 159 (307)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHHHHH
Confidence 88
Q ss_pred cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHH
Q psy14621 96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFA 170 (248)
Q Consensus 96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv 170 (248)
++++|++|+++|+||| |++++|+||+++ |+.+ ++++.+++|.+++++++++|++.+ +||+++|++|.++++++
T Consensus 160 l~v~~~~v~~~viGeh-g~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~~~~~ii 237 (307)
T PRK06223 160 LNVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAASIAEMV 237 (307)
T ss_pred hCcChhhCcccEEcCC-CCcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHHHHHHH
Confidence 8999999999999999 999999999996 5544 555668999999999999999974 58999999999999999
Q ss_pred HHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621 171 FSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241 (248)
Q Consensus 171 ~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~ 241 (248)
++|+. |++.++|++ +++|+|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.++..
T Consensus 238 ~ail~---~~~~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~ 306 (307)
T PRK06223 238 EAILK---DKKRVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEAL 306 (307)
T ss_pred HHHHc---CCCcEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999 899999998 9999999 8999999999999999999999 799999999999999999988753
No 31
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.7e-38 Score=300.03 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=172.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecC--C--chhhHhhhcCccCC--CeEEEEcCc-------
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIV--H--TPGVAADLSHIESK--AHVQAFNGA------- 92 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~--~--a~g~a~DL~~~~~~--~~v~~~~~~------- 92 (248)
.++.+|+|.||||++|+++.|.++...++. .|+|+|++ + ++|++|||+|++++ .++.+++++
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~da 200 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDA 200 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCC
Confidence 346799999999999999999999987775 59999994 4 89999999999853 235554432
Q ss_pred h-------------------------------------------------------------------------------
Q psy14621 93 D------------------------------------------------------------------------------- 93 (248)
Q Consensus 93 d------------------------------------------------------------------------------- 93 (248)
|
T Consensus 201 DvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gtlds 280 (452)
T cd05295 201 HVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQE 280 (452)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecchHH
Confidence 1
Q ss_pred --------hhcCCCCCCe-eEeEEeccCCCcccccccCcc----------------cCCC-CChHH--HHHHHHHHhhcc
Q psy14621 94 --------QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT----------------PSVS-FPDDQ--LKALTGRIQEAG 145 (248)
Q Consensus 94 --------~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~----------------p~~~-~~~~~--~~~i~~~v~~~g 145 (248)
++++|+|++| +++||||| |+||||+||+++ |+.+ +.++. .+++.+.+++++
T Consensus 281 ~R~r~~LA~kl~V~~~~V~~~~VwGeH-G~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg 359 (452)
T cd05295 281 NRAKALLARKLNVNSAGIKDVIVWGNI-GGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLS 359 (452)
T ss_pred HHHHHHHHHHhCcCHHHceeeEEEEcc-CCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHH
Confidence 8999999999 67999999 999999999995 2222 22222 567899999999
Q ss_pred ceeeeccCCCCchhHHHHHHHHHHHHHHhcccCCC--CeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCC
Q psy14621 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGE--SNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLS 220 (248)
Q Consensus 146 ~eIi~~k~gkgst~~siA~a~~~iv~aIl~~l~~~--~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls 220 (248)
+ + +||+|+||+|.|+++++++|+. |+ ++++||| +++|+|| +++|||+||++|++||+.+++| +|+
T Consensus 360 ~---~---rkgsT~~siA~A~~~iv~ail~---~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L-~L~ 429 (452)
T cd05295 360 S---S---LNHEAAISPAHAIATTLSYWYH---GSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL-ELS 429 (452)
T ss_pred H---h---ccCChHHHHHHHHHHHHHHHHh---CCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC-CCC
Confidence 8 3 5899999999999999999999 76 5899999 9999998 7999999999999999999999 699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy14621 221 DFEKELVKAAVPELKKNIAKGE 242 (248)
Q Consensus 221 ~~E~~~L~~Sa~~I~~~i~~~l 242 (248)
++|+++|++|+++|.++.+.++
T Consensus 430 e~E~~kL~~S~~eL~~E~~~~~ 451 (452)
T cd05295 430 EILREVLKRITSDLIQEKLVAL 451 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999987763
No 32
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=6.8e-37 Score=278.29 Aligned_cols=147 Identities=24% Similarity=0.306 Sum_probs=131.4
Q ss_pred hhcCCCCCCe-eEeEEeccCCCcccccccCccc--------CCCC-ChHH--HHHHHHHHhhccceeeeccCCCCchhHH
Q psy14621 94 QLKGLNPTDV-NVPVIGGHAGITIIPLISQATP--------SVSF-PDDQ--LKALTGRIQEAGTEVVKAKAGAGSATLS 161 (248)
Q Consensus 94 ~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~p--------~~~~-~~~~--~~~i~~~v~~~g~eIi~~k~gkgst~~s 161 (248)
++++++|++| ++|||||| |+||||+||+++. +.++ .+++ +++|.++++++|++|+++ +||+|+||
T Consensus 147 ~~l~v~~~~V~~~~VlGeH-G~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~--~kg~t~~~ 223 (309)
T PLN00135 147 ERLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKA--RKLSSALS 223 (309)
T ss_pred HHhCcChhhceeeEEEEcC-CCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHc--cCccHHHH
Confidence 8999999999 79999999 9999999999964 3332 3333 788999999999999996 37899999
Q ss_pred HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621 162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238 (248)
Q Consensus 162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i 238 (248)
+|.++++++++|+.+. |+++++|+| +++|+|| +++|||+||++|++||++++++ +|+++|+++|++|++.|++++
T Consensus 224 ia~a~~~iv~ai~~~~-~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~ 301 (309)
T PLN00135 224 AASSACDHIRDWVLGT-PEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEK 301 (309)
T ss_pred HHHHHHHHHHHHHhCC-cCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999832 358999999 9999998 6999999999999999999999 699999999999999999999
Q ss_pred HHHhhhh
Q psy14621 239 AKGEEFV 245 (248)
Q Consensus 239 ~~~l~~~ 245 (248)
+.+++.+
T Consensus 302 ~~~~~~~ 308 (309)
T PLN00135 302 ELAYSCL 308 (309)
T ss_pred HHHHHHh
Confidence 9998765
No 33
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=7.9e-37 Score=256.52 Aligned_cols=145 Identities=41% Similarity=0.652 Sum_probs=134.7
Q ss_pred hhcCCCCCCeeEeEEeccCCCcccccccCcc----cC-------CCCChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PS-------VSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM 162 (248)
Q Consensus 94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~-------~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si 162 (248)
++++++|++|++|||||| |+||||+||+++ |+ ..++++++++|.++++++|++|+++| +|+|+||+
T Consensus 14 ~~l~v~~~~v~~~ViGeH-g~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k--~g~t~~s~ 90 (174)
T PF02866_consen 14 EKLGVNPSSVNAYVIGEH-GDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEIIKAK--GGSTSYSI 90 (174)
T ss_dssp HHHTSGGGGEEEEEEBSS-STTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHH--SSSCHHHH
T ss_pred HHHCcCccceEEEEEecC-CcceeeeeecccccccccccccccccchhHHhhhccccccEeccceeeeec--cccCcCCH
Confidence 578999999999999999 999999999998 44 23777889999999999999999964 29999999
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-Cc--eEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q psy14621 163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EA--SYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVPELKKN 237 (248)
Q Consensus 163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~--v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~~I~~~ 237 (248)
|.|+++|+++|+. |++.++|++ +++++|| .+ +|||+||++|++|++++++ + +||++|+++|++|++.|++.
T Consensus 91 A~a~~~~v~ail~---~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~sa~~l~~~ 166 (174)
T PF02866_consen 91 AAAAARIVEAILK---DERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDL-PLSEEEQEKLKESAKELKKE 166 (174)
T ss_dssp HHHHHHHHHHHHT---THTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSB-SSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---cccccccceeccccccCcccccceecceEEEcCCeeEEEeCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 889999999 9999999 55 9999999999999999999 7 79999999999999999999
Q ss_pred HHHHhhhh
Q psy14621 238 IAKGEEFV 245 (248)
Q Consensus 238 i~~~l~~~ 245 (248)
++.+++|.
T Consensus 167 i~~~~~f~ 174 (174)
T PF02866_consen 167 IEKGLEFV 174 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999984
No 34
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=1.6e-35 Score=269.85 Aligned_cols=146 Identities=12% Similarity=0.119 Sum_probs=127.4
Q ss_pred hhcCCCCCCeeEe-EEeccCCCcccccccCccc------CCC---CChH-HHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621 94 QLKGLNPTDVNVP-VIGGHAGITIIPLISQATP------SVS---FPDD-QLKALTGRIQEAGTEVVKAKAGAGSATLSM 162 (248)
Q Consensus 94 ~~l~v~p~~V~~~-ViGeHsGds~vp~wS~a~p------~~~---~~~~-~~~~i~~~v~~~g~eIi~~k~gkgst~~si 162 (248)
++++++|++|+.+ ||||| |+||||+||+++. +.. ++++ .+++|.++++++|++|++ +||+|+|++
T Consensus 149 ~~l~v~~~~V~~~~V~GeH-G~s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~ 224 (313)
T TIGR01756 149 SKLKVPVDHIYHVVVWGNH-AESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAAS 224 (313)
T ss_pred HHhCcChhheeeeEEEECC-CCceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHH
Confidence 8899999999665 99999 9999999999963 322 2332 478999999999999999 588999998
Q ss_pred H-HHHHHHHHHHhcccCCCCeEEEee-EecC--CCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHH
Q psy14621 163 A-YAGARFAFSLIQGLKGESNVIECA-YVKS--DVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVPELK 235 (248)
Q Consensus 163 A-~a~~~iv~aIl~~l~~~~~il~~s-~~~g--~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~~I~ 235 (248)
+ .++++++++|+.+. ++++++||| |+++ +|| +++|||+||++|++|++++++ + +|+++|+++|++|++.|+
T Consensus 225 ~a~ai~~iv~ail~~~-~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~ 302 (313)
T TIGR01756 225 PVKASLQHMKAWLFGT-RPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLF 302 (313)
T ss_pred HHHHHHHHHHHHhcCC-CCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHH
Confidence 8 69999999999932 245999999 8863 898 599999999999999999999 9 699999999999999999
Q ss_pred HHHHHHhhhh
Q psy14621 236 KNIAKGEEFV 245 (248)
Q Consensus 236 ~~i~~~l~~~ 245 (248)
++.+.+++.+
T Consensus 303 ~e~~~~~~~~ 312 (313)
T TIGR01756 303 EERETALKAL 312 (313)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 35
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=99.97 E-value=8.3e-31 Score=233.08 Aligned_cols=161 Identities=32% Similarity=0.489 Sum_probs=145.6
Q ss_pred EEEEcCCCccHHHHHHHHHhCC--CcceEEEEecCC--chhhHhhhcCccCC---CeEEEEcC-------ch--------
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSP--LVDHLSLYDIVH--TPGVAADLSHIESK---AHVQAFNG-------AD-------- 93 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~--l~~elvLiDi~~--a~g~a~DL~~~~~~---~~v~~~~~-------~d-------- 93 (248)
|+||||+|++|+++|+.|++++ ..+||+|+|+++ +++.++||+|+... .++..+++ +|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 6899998999999999999999 889999999988 89999999999753 35554332 11
Q ss_pred ----------------------------------------------------------------------------hhcC
Q psy14621 94 ----------------------------------------------------------------------------QLKG 97 (248)
Q Consensus 94 ----------------------------------------------------------------------------~~l~ 97 (248)
++++
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la~~l~ 160 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLG 160 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHHHHHHHHHHhC
Confidence 8889
Q ss_pred CCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhccc
Q psy14621 98 LNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGL 177 (248)
Q Consensus 98 v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~l 177 (248)
++|++|+++|||+| |++|+|+||+++ +|.++++++++|+.
T Consensus 161 v~~~~v~~~v~G~h-g~~~~~~~s~~~-------------------------------------~a~~~~~ii~ai~~-- 200 (263)
T cd00650 161 VDPDDVKVYILGEH-GGSQVPDWSTVR-------------------------------------IATSIADLIRSLLN-- 200 (263)
T ss_pred CCccceEEEEEEcC-CCceEeccccch-------------------------------------HHHHHHHHHHHHHc--
Confidence 99999999999999 899999999964 89999999999999
Q ss_pred CCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621 178 KGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238 (248)
Q Consensus 178 ~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i 238 (248)
|++.++|++ +++|.|| +++|||+||++|++|+++++++ +|+++|+++|++|++.++..+
T Consensus 201 -~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 201 -DEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred -CCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 899999999 9999998 7999999999999999999999 799999999999999999765
No 36
>KOG1496|consensus
Probab=99.95 E-value=6e-28 Score=209.34 Aligned_cols=209 Identities=28% Similarity=0.367 Sum_probs=173.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCCC--eEEEEcCc-------h
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESKA--HVQAFNGA-------D 93 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~~--~v~~~~~~-------d 93 (248)
...+|.|.||+|+||++++|.++...++. .|+|+|+.+ .+|++|+|+||++|. .|..+++. +
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~ 82 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVD 82 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccCc
Confidence 35689999999999999999999854442 799999998 799999999998653 22222211 0
Q ss_pred --------------------------------------------------------------------------------
Q psy14621 94 -------------------------------------------------------------------------------- 93 (248)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (248)
T Consensus 83 ~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhNR 162 (332)
T KOG1496|consen 83 VAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHNR 162 (332)
T ss_pred EEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchhh
Confidence
Q ss_pred ------hhcCCCCCCe-eEeEEeccCCCcccccccCcc--------cCCC-CChHH--HHHHHHHHhhccceeeeccCCC
Q psy14621 94 ------QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT--------PSVS-FPDDQ--LKALTGRIQEAGTEVVKAKAGA 155 (248)
Q Consensus 94 ------~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~--------p~~~-~~~~~--~~~i~~~v~~~g~eIi~~k~gk 155 (248)
.++||..++| +..|||+| ..||+|+..+++ |+.+ +.++. ..++++.|+++|..||++| |
T Consensus 163 A~~QlA~klgv~~~~VkNviIWGNH-SsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ar--k 239 (332)
T KOG1496|consen 163 ALAQLALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKAR--K 239 (332)
T ss_pred HHHHHHHhhCCchhhcceeEEeccc-ccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhh--h
Confidence 7789999999 89999999 579999999997 3333 33332 5689999999999999985 7
Q ss_pred CchhHHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHHHHHHHH
Q psy14621 156 GSATLSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKELVKAAV 231 (248)
Q Consensus 156 gst~~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~~L~~Sa 231 (248)
-|+.+|.|.++++.++.+..|. .+..+++++ |.+|.|| +++.||+||++- +|-++++ +| +++|+-++++..++
T Consensus 240 ~SSA~SaA~aacDhi~dw~~gT-peG~fvSmgV~sDGsYgip~gli~SfPv~~k-~g~wkiVqgl-~iddf~r~km~~t~ 316 (332)
T KOG1496|consen 240 LSSAMSAAKAACDHIRDWWFGT-PEGTFVSMGVYSDGSYGIPDGLIFSFPVTIK-NGDWKIVQGL-PIDDFSREKMDLTA 316 (332)
T ss_pred hhhhhhHHHhHhhhhhheecCC-CCccEEEEeeecCCCCCCCCCeEEEcceEec-CCceEEEcCc-chhHHHHHhhhhhH
Confidence 8999999999999999999854 356899999 9999998 799999999995 5655555 79 59999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy14621 232 PELKKNIAKGEEFVA 246 (248)
Q Consensus 232 ~~I~~~i~~~l~~~~ 246 (248)
++|+++.+.++.++.
T Consensus 317 ~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 317 KELKEEKDLAYSCLS 331 (332)
T ss_pred HHHHHhHHHHHHhhc
Confidence 999999999987764
No 37
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.36 E-value=3.9e-13 Score=109.45 Aligned_cols=58 Identities=41% Similarity=0.596 Sum_probs=52.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCC--eEEEEcC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKA--HVQAFNG 91 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~--~v~~~~~ 91 (248)
|||+||||+|+||+++|++|+++++++||+|+|+++ ++|+++||+|+.+++ ++.++.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccc
Confidence 699999999999999999999999999999999997 999999999998654 4555544
No 38
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=98.87 E-value=2e-07 Score=88.96 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC---CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q psy14621 162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAA 230 (248)
Q Consensus 162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg---~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~S 230 (248)
-|.++++|++||+. |++.+++++ +.+|.|+ .++++++||+||++|++.+ .+.+|.+.-...++.-
T Consensus 315 ya~~a~~ii~aI~~---d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi-~vg~lP~~~~~l~~~~ 383 (437)
T cd05298 315 HGEYIVDLAASIAY---NTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPL-VVGKIPTFYKGLMEQQ 383 (437)
T ss_pred hHHHHHHHHHHHHc---CCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceec-ccCCCCHHHHHHHHHH
Confidence 37889999999999 999999998 8788886 6999999999999999997 4445777766655443
No 39
>PRK15076 alpha-galactosidase; Provisional
Probab=98.57 E-value=2.6e-06 Score=81.37 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEeeEecCC-C-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q psy14621 163 AYAGARFAFSLIQGLKGESNVIECAYVKSD-V-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKA 229 (248)
Q Consensus 163 A~a~~~iv~aIl~~l~~~~~il~~s~~~g~-y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~ 229 (248)
+..++++++||.. |++.++.+...+.. . + .|.+.=+||+++++|++.+- +.+|.+..+..++.
T Consensus 307 ~e~a~~ii~ai~~---~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-~g~lP~~~~~l~~~ 373 (431)
T PRK15076 307 REYASTIIEAIET---GEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTK-VGDLPPQLAALNRT 373 (431)
T ss_pred hHHHHHHHHHHhc---CCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeee-cCCCCHHHHHHHHH
Confidence 4568899999998 88877776544433 2 2 69999999999999999974 33577776665444
No 40
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.51 E-value=9.7e-06 Score=77.18 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcccCCCCeEEEeeEecCC-C-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q psy14621 164 YAGARFAFSLIQGLKGESNVIECAYVKSD-V-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAA 230 (248)
Q Consensus 164 ~a~~~iv~aIl~~l~~~~~il~~s~~~g~-y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~S 230 (248)
..++++++||.. |++.++.+..-+.. - + .+.+.=+||.++++|++.+ ...+|.+.....++.-
T Consensus 311 e~a~~ii~ai~~---~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~-~~g~lp~~~~~l~~~~ 377 (423)
T cd05297 311 EYASPIIEALVT---GKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPE-KIGPLPPQLAALIRPR 377 (423)
T ss_pred HHHHHHHHHHhc---CCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceec-ccCCCCHHHHHHHHHH
Confidence 457899999998 88888777633332 2 2 7999999999999999997 4446766655554443
No 41
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=98.48 E-value=8.3e-06 Score=77.76 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEeeEecCCC--C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHH
Q psy14621 163 AYAGARFAFSLIQGLKGESNVIECAYVKSDV--T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVK 228 (248)
Q Consensus 163 A~a~~~iv~aIl~~l~~~~~il~~s~~~g~y--g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~ 228 (248)
+-.++.+++||.+ |++.++.+...+... + .+.+.=+||+++++|++.+ .+.+|.+.-..+++
T Consensus 313 ~e~a~~ii~ai~~---~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~-~vg~lp~~~~~Li~ 378 (425)
T cd05197 313 SEAAIPLIRALLN---DNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPI-KVGPLDRFVKGLLR 378 (425)
T ss_pred HHHHHHHHHHHHc---CCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-ccCCCCHHHHHHHH
Confidence 4567789999999 888877665333222 2 6999999999999999986 44457654444333
No 42
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.96 E-value=0.0002 Score=68.19 Aligned_cols=62 Identities=10% Similarity=0.160 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEeeEec-CCC-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHH
Q psy14621 163 AYAGARFAFSLIQGLKGESNVIECAYVK-SDV-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVK 228 (248)
Q Consensus 163 A~a~~~iv~aIl~~l~~~~~il~~s~~~-g~y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~ 228 (248)
+-.++++++||.. |++..+.+...+ |.- + .+.+.=+||.++++|+..+ ...+|.+.....++
T Consensus 302 ~e~a~~ii~ai~~---~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~-~vg~lP~~~~~l~~ 367 (419)
T cd05296 302 SEAALALISAIYN---DKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPL-PVGPLPPAILGLIQ 367 (419)
T ss_pred HHHHHHHHHHHhc---CCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-cCCCCCHHHHHHHH
Confidence 3567899999998 888777665333 322 2 6999999999999999996 44457777665443
No 43
>KOG1494|consensus
Probab=97.22 E-value=0.00012 Score=65.99 Aligned_cols=29 Identities=76% Similarity=1.201 Sum_probs=24.4
Q ss_pred cccCCCCCChhhhhhhccCcccccccccc
Q psy14621 2 VAGASGGIGQPLSLLLKQSPLVDHLSLYD 30 (248)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (248)
|-||+||||||+|+|||+.|+++.+..++
T Consensus 33 vlGAaGGIGQPLSLLlK~np~Vs~LaLYD 61 (345)
T KOG1494|consen 33 VLGAAGGIGQPLSLLLKLNPLVSELALYD 61 (345)
T ss_pred EEecCCccCccHHHHHhcCcccceeeeee
Confidence 56999999999999999999887754443
No 44
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.20 E-value=0.005 Score=51.91 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=28.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||+|||| |..|..+|+.++..|. +++|+|.++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSP 32 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECCh
Confidence 7999999 9999999999999997 999999987
No 45
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.14 E-value=0.0061 Score=51.72 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=26.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||. |+||..+|..++..|. +++-+|+++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDE 33 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-H
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCCh
Confidence 79999999 9999999999999996 899999986
No 46
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.91 E-value=0.013 Score=45.91 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=35.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSH 79 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~ 79 (248)
||+||||+|.+|..++.+|...+-++-+.+++..+..|..+.-.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~ 45 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVF 45 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhc
Confidence 899999999999999999999998887788877654455444433
No 47
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.78 E-value=0.0092 Score=47.54 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 459999999 9999999999999996 7999999865
No 48
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.63 E-value=0.014 Score=52.31 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||+|||+ |.+|.++|..++..+. +++++|+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~ 36 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISD 36 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCH
Confidence 358999999 9999999999999986 899999987
No 49
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.53 E-value=0.017 Score=47.42 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=30.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||+|+|| |+-|.++|..|+.++ .++.|++.++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g--~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNG--HEVTLWGRDE 32 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCT--EEEEEETSCH
T ss_pred CEEEECc-CHHHHHHHHHHHHcC--CEEEEEeccH
Confidence 8999999 999999999999999 5999999876
No 50
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.47 E-value=0.022 Score=51.47 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||+|||+ |..|..+|.+++..+. +++|+|+++
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTE 38 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCH
Confidence 359999999 9999999999999997 899999987
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.022 Score=51.14 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=30.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||+|||+ |.+|..+|..++..+. +++|+|+++
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISD 36 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCH
Confidence 59999999 9999999999999886 899999986
No 52
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.021 Score=49.90 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=46.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcCccCCCeEEEEcCch----hhcCCCCCCeeEeEE
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGAD----QLKGLNPTDVNVPVI 108 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~~~~~~~v~~~~~~d----~~l~v~p~~V~~~Vi 108 (248)
||++|||+ |.+|+++|-.|..++- +++++|.++ ..-+.+.- ...+++..-.+.| +.+|++-.++-..+.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEFLAD---ELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHhhh---hcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 68999999 9999999999999986 899999987 22221110 1123333322222 566666666655566
Q ss_pred ec
Q psy14621 109 GG 110 (248)
Q Consensus 109 Ge 110 (248)
|+
T Consensus 75 ~~ 76 (225)
T COG0569 75 GN 76 (225)
T ss_pred CC
Confidence 54
No 53
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.29 E-value=0.023 Score=51.16 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+||+|||+ |.+|..+|..|+..+. +++|+|+++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSA 37 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 469999999 9999999999999986 899999986
No 54
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.24 E-value=0.026 Score=51.04 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCc
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHI 80 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~ 80 (248)
+..||.|+|| |.+|.++++.|...+ +.+|.++|++. +++.+.++.+.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G-~~~I~I~nR~~~ka~~la~~l~~~ 174 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLG-VERLTIFDVDPARAAALADELNAR 174 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhh
Confidence 3469999999 999999999999988 46799999987 77777777654
No 55
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.16 E-value=0.028 Score=52.57 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.||+|||| |.+|.++|+.|+..+. +++++|...
T Consensus 2 ~~vvIIGa-G~~G~~~A~~La~~g~--~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGA-GITGVTTAYALAQRGY--QVTVFDRHR 34 (410)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 49999999 9999999999999885 899999864
No 56
>KOG1429|consensus
Probab=95.10 E-value=0.032 Score=50.75 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=37.2
Q ss_pred cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCcc
Q psy14621 28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIE 81 (248)
Q Consensus 28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~ 81 (248)
.....+.||+|+||+||||++++-.|+..+ .++..+|-.. .|....+.|..
T Consensus 22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~eg--h~VIa~Dn~f-tg~k~n~~~~~ 72 (350)
T KOG1429|consen 22 VKPSQNLRILITGGAGFIGSHLVDKLMTEG--HEVIALDNYF-TGRKENLEHWI 72 (350)
T ss_pred ccCCCCcEEEEecCcchHHHHHHHHHHhcC--CeEEEEeccc-ccchhhcchhc
Confidence 334456899999999999999999999998 5777777643 23333444443
No 57
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.03 E-value=0.03 Score=50.38 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=31.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.||+|||+ |.+|..+|..++..+. +++++|+++
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSE 36 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCH
Confidence 58999999 9999999999999986 899999987
No 58
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.00 E-value=0.034 Score=51.06 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+++|+|||+ |-+|.++||.|+..+. +++++|..+
T Consensus 3 ~~~~vvVIGg-Gi~Gls~A~~La~~G~--~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGG-GIVGLSAAYYLAERGA--DVTVLEAGE 37 (387)
T ss_pred CcceEEEECC-cHHHHHHHHHHHHcCC--EEEEEecCc
Confidence 4579999998 9999999999999998 899999877
No 59
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.00 E-value=0.032 Score=47.91 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|+|+ |.+|+.+|..|+..|+ .+++|+|.+.
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFDV 55 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 469999999 9999999999999995 6899999874
No 60
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.98 E-value=0.033 Score=52.64 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||.|||| |+||+++|..|++++- .||.+.|...
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSK 35 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCH
Confidence 579999999 9999999999999987 7999999985
No 61
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.96 E-value=0.036 Score=53.05 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=31.2
Q ss_pred cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
..+++||.|+||+|+||++++..|+.++. +++++|.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEec
Confidence 34567999999999999999999999885 7888873
No 62
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=94.92 E-value=0.038 Score=52.91 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+.|||.|+||+|+||++++-.|..++. +++.+|..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 458999999999999999999999885 88999864
No 63
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.90 E-value=0.035 Score=51.77 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||| |.+|.++|+.|+.++. +++|+|...
T Consensus 1 ~~v~IVG~-Gi~Gls~A~~l~~~g~--~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGS-GVIGVTSAWYLAQAGH--EVTVIDRQP 33 (416)
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence 58999999 9999999999999886 799999863
No 64
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.83 E-value=0.039 Score=44.23 Aligned_cols=33 Identities=30% Similarity=0.624 Sum_probs=30.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||.|||+ |.+|+.+|..|+..++ .++.|+|-+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6999999 9999999999999996 7899999875
No 65
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.83 E-value=0.043 Score=45.19 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||++||. |..|+.+|..|...+. ++..+|+++
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP 34 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch
Confidence 579999999 9999999999999987 899999876
No 66
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.80 E-value=0.038 Score=52.58 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+||+|||. |.+|.++|..|+..+. ++..+|+++
T Consensus 2 ~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~ 36 (415)
T PRK11064 2 SFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQ 36 (415)
T ss_pred CccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCH
Confidence 3579999999 9999999999999985 899999987
No 67
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.79 E-value=0.032 Score=44.73 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEE
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY 65 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi 65 (248)
..++||+|||| |+||.+++..|...+. +++-+
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v 39 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGH--EVVGV 39 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTS--EEEEE
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCC--eEEEE
Confidence 35689999999 9999999999999985 45444
No 68
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.75 E-value=0.037 Score=50.29 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=30.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||+|||+ |.+|+++|..|+..+. +++++|.++
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADP 35 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCH
Confidence 58999998 9999999999999986 899999986
No 69
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.71 E-value=0.049 Score=47.05 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||++|++|.+++..|...+ .++.++|.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCH
Confidence 689999833999999999999987 4899999876
No 70
>PRK07236 hypothetical protein; Provisional
Probab=94.71 E-value=0.046 Score=50.77 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=32.7
Q ss_pred cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++.++||.|||| |-.|.++|+.|...++ +++++|..+
T Consensus 3 ~~~~~~ViIVGa-G~aGl~~A~~L~~~G~--~v~v~E~~~ 39 (386)
T PRK07236 3 HMSGPRAVVIGG-SLGGLFAALLLRRAGW--DVDVFERSP 39 (386)
T ss_pred CCCCCeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence 355689999999 9999999999999997 799999764
No 71
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.67 E-value=0.043 Score=49.41 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.||+|||+ |.+|..+|..++..+. +++++|.++
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDP 37 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCH
Confidence 58999999 9999999999999985 899999986
No 72
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.64 E-value=0.07 Score=38.42 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=29.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||+|||+ |.+|.-+|..|...+. ++.|++..+
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~--~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGK--EVTLIERSD 32 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTS--EEEEEESSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhCc--EEEEEeccc
Confidence 7999999 9999999999999884 999999987
No 73
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.63 E-value=0.052 Score=49.80 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+++||.|+||+|++|++++..|..++. +++.+|..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~ 48 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNF 48 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 457999999999999999999999874 78888863
No 74
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.62 E-value=0.053 Score=49.26 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..|||+|||+ |++|.++|..|...+. ++.++|.++
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRS 37 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence 4579999999 9999999999999985 899999875
No 75
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.61 E-value=0.045 Score=48.89 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+ |.+|..+|..|...+. ++.++|.++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~ 33 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRG 33 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCh
Confidence 58999999 9999999999998874 899999854
No 76
>PRK06153 hypothetical protein; Provisional
Probab=94.60 E-value=0.04 Score=52.04 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||+|||+ |.+|+.++..|+..|+ .+|+|+|-+.
T Consensus 176 ~~~VaIVG~-GG~GS~Va~~LAR~GV-geI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGL-GGTGSYILDLVAKTPV-REIHLFDGDD 210 (393)
T ss_pred hCcEEEEcC-CccHHHHHHHHHHcCC-CEEEEECCCE
Confidence 459999999 9999999999999996 7999999865
No 77
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.56 E-value=0.049 Score=49.32 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||+|||+ |.+|.++|..|+..+. +++++|.++
T Consensus 5 ~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVME 37 (311)
T ss_pred cEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence 58999999 9999999999999886 899999977
No 78
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.55 E-value=0.047 Score=52.97 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|||+|||+ |.||..+|..|+..+.--+++.+|+++
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 589999999 999999999999986444899999987
No 79
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.48 E-value=0.051 Score=45.58 Aligned_cols=33 Identities=42% Similarity=0.665 Sum_probs=30.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||.|||+ |.+|+.+|..|+..++ .++.|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6999999 9999999999999986 6899999875
No 80
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.48 E-value=0.052 Score=46.99 Aligned_cols=35 Identities=40% Similarity=0.608 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|||+ |.+|+.+|..|+..++ .+|.|+|.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 469999999 9999999999999996 6899999874
No 81
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.43 E-value=0.043 Score=49.29 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.||+|||+ |.+|..+|..|+..+. ++.++|+++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQ 34 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCH
Confidence 48999999 9999999999999886 899999987
No 82
>PLN02427 UDP-apiose/xylose synthase
Probab=94.39 E-value=0.062 Score=49.93 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
++|||.|+|++|+||++++-.|..++- .+++.+|.+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g-~~V~~l~r~ 48 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETP-HKVLALDVY 48 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCC-CEEEEEecC
Confidence 357999999999999999999998742 278888864
No 83
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.33 E-value=0.053 Score=48.96 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|||+|||+ |.+|.++|..|...+. ++.++|.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~ 34 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDP 34 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCH
Confidence 479999999 9999999999999875 789999975
No 84
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.31 E-value=0.07 Score=48.52 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...|||+|||+ |.||..+|..|...+. ++.+++.++
T Consensus 3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC
Confidence 35689999999 9999999999999874 888998765
No 85
>PLN02206 UDP-glucuronate decarboxylase
Probab=94.30 E-value=0.056 Score=51.83 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+.+||.|+|++|+||++++..|..++. +++.+|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~ 152 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNF 152 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCC
Confidence 458999999999999999999999885 78888753
No 86
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.23 E-value=0.068 Score=39.56 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCC-cceEEEE-ecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPL-VDHLSLY-DIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLi-Di~~ 69 (248)
||+|||+ |++|++++..|...++ -.++.++ +.++
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 8999999 9999999999999884 3477756 8776
No 87
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.23 E-value=0.057 Score=48.18 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+ |.+|.++|..|...+...++..+|.++
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~ 35 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNE 35 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 58999998 999999999999988766788999876
No 88
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=94.12 E-value=0.08 Score=48.22 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||.|+||+|+||++++..|..++. +++++|.+.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRS 34 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCC
Confidence 4899999999999999999999885 788888653
No 89
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.11 E-value=0.05 Score=49.73 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||+|||+ |.+|.++|..|...+. ++.++|.++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRAR 35 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHH
Confidence 379999999 9999999999999985 799999754
No 90
>PLN02778 3,5-epimerase/4-reductase
Probab=94.08 E-value=0.1 Score=47.12 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=28.7
Q ss_pred ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEE
Q psy14621 29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY 65 (248)
Q Consensus 29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi 65 (248)
.+...|||.|+|++|++|++++..|..++. ++++.
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~ 39 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYG 39 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEe
Confidence 344568999999999999999999999885 56544
No 91
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.04 E-value=0.076 Score=49.02 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=31.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.||+|||+ |.+|..+|..++..|+ +++|+|+++
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAP 40 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence 58999999 9999999999999997 899999986
No 92
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.02 E-value=0.071 Score=48.74 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|||+|||+ |.+|.++|..|...+. ++.++|.++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRP 37 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 579999999 9999999999998875 799999975
No 93
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.99 E-value=0.063 Score=48.99 Aligned_cols=33 Identities=24% Similarity=0.548 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||| |.+|.++|..|...+. ++.|++.++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~ 33 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNH 33 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCH
Confidence 58999999 9999999999999874 789999865
No 94
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.99 E-value=0.073 Score=49.42 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 469999999 9999999999999995 7999999863
No 95
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.98 E-value=0.079 Score=47.90 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||.|+||+|+||+.++..|..++. +++.++.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~ 34 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNL 34 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcCh
Confidence 5899999999999999999999885 788887764
No 96
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.98 E-value=0.079 Score=49.00 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=32.1
Q ss_pred cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++..+|.|||| |-+|.++|+.|...++ +++|+|..+
T Consensus 4 ~~~~~dViIVGa-G~~Gl~~A~~L~~~G~--~v~liE~~~ 40 (388)
T PRK07494 4 EKEHTDIAVIGG-GPAGLAAAIALARAGA--SVALVAPEP 40 (388)
T ss_pred CCCCCCEEEECc-CHHHHHHHHHHhcCCC--eEEEEeCCC
Confidence 344568999999 9999999999999986 799999865
No 97
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.95 E-value=0.064 Score=48.02 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+ |.+|.++|..|...+. ++.++|.++
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~ 33 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRE 33 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 58999998 9999999999999875 899999876
No 98
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.88 E-value=0.096 Score=44.88 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=33.7
Q ss_pred cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
....+.++|+|+|. |++|+++|..|...+. +++.+|.++
T Consensus 23 ~~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~--~Vvv~D~~~ 61 (200)
T cd01075 23 TDSLEGKTVAVQGL-GKVGYKLAEHLLEEGA--KLIVADINE 61 (200)
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 34456689999999 9999999999999986 899999876
No 99
>PRK08328 hypothetical protein; Provisional
Probab=93.83 E-value=0.082 Score=46.33 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCc
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHT 70 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a 70 (248)
..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+..
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gv-g~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGV-GRILLIDEQTP 62 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence 469999999 9999999999999995 78999997663
No 100
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.82 E-value=0.08 Score=50.10 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=30.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+ |.+|..+|..|+..+. ++..+|+++
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~ 33 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQ 33 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCH
Confidence 58999999 9999999999999886 799999976
No 101
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.78 E-value=0.09 Score=46.97 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=29.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|+|||+ |-+|.++|+.|+.++. +++|+|.+.
T Consensus 1 DvvIIGa-Gi~G~~~A~~La~~G~--~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGA-GIAGLSTAYELARRGH--SVTLLERGD 32 (358)
T ss_dssp EEEEECT-SHHHHHHHHHHHHTTS--EEEEEESSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeecc
Confidence 5899999 9999999999999998 999999875
No 102
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.75 E-value=0.087 Score=45.87 Aligned_cols=35 Identities=40% Similarity=0.608 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 459999999 9999999999999995 7999999765
No 103
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.75 E-value=0.09 Score=46.43 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 469999999 9999999999999985 7999999865
No 104
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.74 E-value=0.089 Score=48.03 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIV 68 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~ 68 (248)
+|||.|+||+|+||++++..|... +. +++.+|..
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~ 35 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQ 35 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCc
Confidence 469999999999999999999875 43 78888864
No 105
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.72 E-value=0.41 Score=42.82 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
++||+|+|++|.+|..++-.+...+-+.=+.++|.+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 369999996699999999999887655556678843
No 106
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.72 E-value=0.077 Score=46.70 Aligned_cols=35 Identities=37% Similarity=0.479 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|+|+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 459999999 9999999999999995 7999999765
No 107
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.70 E-value=0.09 Score=45.04 Aligned_cols=36 Identities=33% Similarity=0.607 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|+|+ |.+|+.+|..|+..++ .+|.|+|-+.
T Consensus 20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 3469999999 9999999999999995 7899999865
No 108
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.69 E-value=0.097 Score=46.29 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 3469999999 9999999999999995 7999999764
No 109
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.68 E-value=0.083 Score=47.32 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
|||+|||+ |.+|..+|..|...+. ++.+++.
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR 31 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec
Confidence 68999999 9999999999999874 7999997
No 110
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.66 E-value=0.094 Score=44.96 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=29.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+||||+|++|+.++--+..++. |+.-+=.|+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNA 34 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeCh
Confidence 7999999999999999999999987 566555554
No 111
>PRK05868 hypothetical protein; Validated
Probab=93.65 E-value=0.068 Score=49.70 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++|.|||+ |-+|.++|..|...++ ++.+||..+
T Consensus 1 ~~~V~IvGg-G~aGl~~A~~L~~~G~--~v~viE~~~ 34 (372)
T PRK05868 1 MKTVVVSGA-SVAGTAAAYWLGRHGY--SVTMVERHP 34 (372)
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCC
Confidence 468999999 9999999999999997 799999876
No 112
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=93.64 E-value=0.14 Score=46.55 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+.+||.|+||+|+||++++..|..++. +++++|..
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~ 39 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRR 39 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecc
Confidence 457999999999999999999999885 78887764
No 113
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.64 E-value=0.077 Score=50.21 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+ |.||...+-.|++.| .|++.+|+++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~G--HeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELG--HEVVCVDIDE 33 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcC--CeEEEEeCCH
Confidence 79999998 999999999999998 4999999986
No 114
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.58 E-value=0.13 Score=46.38 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=43.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCcc
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIE 81 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~ 81 (248)
+++..+.|+||++.||..+|..|+.++. +|+|+..++ ++..+-+|++-.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~ 54 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT 54 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh
Confidence 4567999999999999999999999997 899999988 778888888744
No 115
>PRK06753 hypothetical protein; Provisional
Probab=93.57 E-value=0.094 Score=48.15 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||.|||| |-.|.++|..|.++++ +++++|..+
T Consensus 1 ~~V~IvGg-G~aGl~~A~~L~~~g~--~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGA-GIGGLTAAALLQEQGH--EVKVFEKNE 33 (373)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence 58999999 9999999999999997 799999876
No 116
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=93.55 E-value=0.1 Score=46.30 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcc--eEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVD--HLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~--elvLiDi~~ 69 (248)
..|||+|||+ |++|.+++..|...+... ++..+|.++
T Consensus 2 ~~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~ 40 (260)
T PTZ00431 2 ENIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSK 40 (260)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCCh
Confidence 3579999999 999999999999887543 488888765
No 117
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.55 E-value=0.093 Score=47.53 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+||+|||+ |.+|.++|..|...+...++.++|.++
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999998 999999999999988766899999976
No 118
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.53 E-value=0.1 Score=46.60 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=28.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|+|||| |-.|.++|+.|+.+++ ++.++|...
T Consensus 2 ~dV~IvGa-G~aGl~~A~~L~~~G~--~v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGA-GPAGLAAALALARAGI--DVTIIERRP 34 (356)
T ss_dssp EEEEEE---SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred ceEEEECC-CHHHHHHHHHHHhccc--ccccchhcc
Confidence 48999999 9999999999999997 799999876
No 119
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.51 E-value=0.08 Score=50.04 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+ |.||..+|..++. + -+++.+|+++
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G--~~VigvD~d~ 32 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-N--HEVVALDILP 32 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-C--CcEEEEECCH
Confidence 59999999 9999999987775 6 3899999987
No 120
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.50 E-value=0.088 Score=51.23 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=31.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||+|||+ |.+|..+|..++..+. ++.++|+++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHP 37 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence 58999999 9999999999999997 899999987
No 121
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=93.49 E-value=0.087 Score=47.35 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
|||.|+|++|+||++++..|..++ +++.+|..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~ 32 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVH 32 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccc
Confidence 589999999999999999998887 46666654
No 122
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.44 E-value=0.12 Score=48.19 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
..+||.|+|++|+||++++-.|..++. ++..+|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEec
Confidence 457999999999999999999999875 78888764
No 123
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.41 E-value=0.28 Score=41.87 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.+|..++..|+.++. ++++++.++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~ 39 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE 39 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346999999999999999999999985 699999886
No 124
>PRK07023 short chain dehydrogenase; Provisional
Probab=93.37 E-value=0.14 Score=43.92 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||.|+|++|.+|.++|..|+.++. ++++++.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 46999999999999999999999885 788888765
No 125
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.36 E-value=0.11 Score=46.78 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|+|+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD 64 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 3469999999 9999999999999995 6899999875
No 126
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.36 E-value=0.094 Score=48.95 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.++|+|||| |-+|.++|.+|...|+ +++|+|..
T Consensus 2 ~~dV~IvGa-G~aGl~lA~~L~~~G~--~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGA-GPAGLALALALARAGL--DVTLLERA 34 (387)
T ss_pred CCCEEEECC-CHHHHHHHHHHHhCCC--cEEEEccC
Confidence 468999999 9999999999999996 89999996
No 127
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.35 E-value=0.099 Score=48.01 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=28.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.|+|||| |-+|.++||.|+.++. +++|+|...
T Consensus 2 dvvIIGa-Gi~G~s~A~~La~~g~--~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGA-GIMGCFAAYHLAKHGK--KTLLLEQFD 33 (380)
T ss_pred cEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence 5899999 9999999999999985 799999864
No 128
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.33 E-value=0.11 Score=46.36 Aligned_cols=35 Identities=31% Similarity=0.147 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+||.|+||+|+||++++..|..++. +++.++.+.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~ 38 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDP 38 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCC
Confidence 46999999999999999999999886 677776654
No 129
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=93.33 E-value=0.53 Score=42.62 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+||+|+|. |.+|.++|..|...+....+.=+|.+.
T Consensus 2 ~~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~ 38 (279)
T COG0287 2 ASMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSA 38 (279)
T ss_pred CCcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcH
Confidence 3579999998 999999999999999966665555554
No 130
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=93.28 E-value=0.13 Score=46.49 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=28.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
|||.|+||+|+||++++..|..++. +++++|..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~ 33 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNL 33 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecC
Confidence 6899999999999999999998874 78888753
No 131
>PLN00198 anthocyanidin reductase; Provisional
Probab=93.27 E-value=0.14 Score=46.42 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++||.|+||+|+||++++..|..++. +++.++.+.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~ 43 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDP 43 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCC
Confidence 457999999999999999999999885 676666554
No 132
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.27 E-value=0.15 Score=40.74 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|||| |..|..+++.|...+ +++|.+++.+.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g-~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALG-AKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTT-SSEEEEEESSH
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcC-CCEEEEEECCH
Confidence 5679999999 999999999999997 56899999875
No 133
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.23 E-value=0.12 Score=47.41 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..|+|||| |-+|.++|+.|++++. +++|+|...
T Consensus 4 ~dv~IIGg-Gi~G~s~A~~L~~~g~--~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGL-GSMGSAAGYYLARRGL--RVLGLDRFM 36 (376)
T ss_pred ccEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccc
Confidence 46999999 9999999999999985 899999764
No 134
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.17 E-value=0.12 Score=48.03 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|||+ |.+|+.+|..|+..|+ .+|.|+|.+.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 469999999 9999999999999995 7899999874
No 135
>PRK07877 hypothetical protein; Provisional
Probab=93.17 E-value=0.089 Score=53.59 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|+|+ | +|+++|..|+..|++.+|.|+|-+.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 469999999 9 9999999999999989999999865
No 136
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.16 E-value=0.11 Score=49.87 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|||| |.+|..+|+.|+.+++ ++.|+|..+
T Consensus 3 ~dVvVIGG-GlAGleAAlaLAr~Gl--~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGA-GLAGSEAAWQLAKRGV--PVELYEMRP 35 (436)
T ss_pred CcEEEECC-CHHHHHHHHHHHhCCC--cEEEEEccC
Confidence 58999999 9999999999999997 799999765
No 137
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.16 E-value=0.12 Score=47.87 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+.+|.|||| |-+|.++|+.|..+++ +++|+|..+
T Consensus 5 ~~~dV~IvGa-G~aGl~~A~~La~~G~--~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGG-GVVGAACALALADAGL--SVALVEGRE 39 (392)
T ss_pred CCCCEEEECc-CHHHHHHHHHHhcCCC--EEEEEeCCC
Confidence 4468999999 9999999999999997 799999865
No 138
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.14 E-value=0.18 Score=40.45 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|||+ |.+|.+++..|...+ ..++.++|.+.
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH
Confidence 4579999999 999999999999887 56899999986
No 139
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.10 E-value=0.14 Score=45.45 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCc----c-----eEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLV----D-----HLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~----~-----elvLiDi~~ 69 (248)
.+..||.|||+ |.+|+.++..|+..+++ . +|.|+|-+.
T Consensus 9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 36679999999 99999999999987531 1 899999765
No 140
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.05 E-value=0.12 Score=47.35 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
-+||+|||| |..|.-+|+.++..++ +++|+|+++
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~ 36 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISP 36 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCH
Confidence 369999999 9999999999999666 899999996
No 141
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.03 E-value=0.12 Score=44.11 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 469999999 8899999999999996 7899999865
No 142
>PRK08013 oxidoreductase; Provisional
Probab=93.00 E-value=0.13 Score=48.14 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|||| |-+|.++|+.|...++ +++|+|..+
T Consensus 3 ~~dV~IvGa-GpaGl~~A~~La~~G~--~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGG-GMVGLAVACGLQGSGL--RVAVLEQRV 36 (400)
T ss_pred cCCEEEECc-CHHHHHHHHHHhhCCC--EEEEEeCCC
Confidence 358999999 9999999999999997 899999865
No 143
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.96 E-value=0.17 Score=46.19 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||.|+|++|++|++++..|..++. +++.+|.++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~ 38 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDP 38 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCC
Confidence 47999999999999999999999874 788888765
No 144
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.94 E-value=0.14 Score=43.77 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 469999999 8899999999999995 7899999865
No 145
>PRK06847 hypothetical protein; Provisional
Probab=92.94 E-value=0.14 Score=46.99 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++.+|+|||| |-.|.++|..|...++ +++++|...
T Consensus 3 ~~~~V~IVGa-G~aGl~~A~~L~~~g~--~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGG-GIGGLSAAIALRRAGI--AVDLVEIDP 37 (375)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence 3569999999 9999999999999987 789999765
No 146
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.93 E-value=0.17 Score=46.38 Aligned_cols=37 Identities=27% Similarity=0.141 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...+||.|+|++|+||++++..|..++. ++++++.+.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~ 44 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDP 44 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 3568999999999999999999999885 677776543
No 147
>PLN02240 UDP-glucose 4-epimerase
Probab=92.92 E-value=0.17 Score=45.91 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
..++||.|+|++|+||++++..|..++. +++++|..
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~ 38 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNL 38 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCC
Confidence 3457999999999999999999998884 78888853
No 148
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.92 E-value=0.17 Score=47.49 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=34.9
Q ss_pred cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.....+.+||.|+||+|+||..++..|..++. ++++++.+.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~ 94 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREK 94 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEech
Confidence 444445678999999999999999999999885 788888765
No 149
>PRK08223 hypothetical protein; Validated
Probab=92.89 E-value=0.14 Score=46.61 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 469999999 9999999999999996 6899999875
No 150
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.87 E-value=0.14 Score=46.61 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.|||+|+|+ |.||..+|..|...+. ++.|++..
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRD 34 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEec
Confidence 479999999 9999999999998874 79999874
No 151
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.84 E-value=0.16 Score=46.15 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++|.|+||+|+||++++..|+.++-..+++++|.+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~ 40 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE 40 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh
Confidence 4689999999999999999999886334788898765
No 152
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.80 E-value=0.14 Score=47.47 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=29.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.+|.|||| |-+|.++|..|.++++ +++|+|..
T Consensus 4 ~dv~IvGg-G~aGl~~A~~L~~~G~--~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGG-GMVGAATALGFAKQGR--SVAVIEGG 35 (384)
T ss_pred ccEEEECc-CHHHHHHHHHHHhCCC--cEEEEcCC
Confidence 58999999 9999999999999997 89999964
No 153
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=92.78 E-value=0.17 Score=46.11 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=28.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+||.|+|++|+||++++..|..++. .+++++|..
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~ 35 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKL 35 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecC
Confidence 5899999999999999999999873 456677753
No 154
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.70 E-value=0.18 Score=45.08 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCC--cceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPL--VDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l--~~elvLiDi~~ 69 (248)
+.|||++||+ |++|.+++..|...+. ..++..+|.++
T Consensus 2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~ 40 (279)
T PRK07679 2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSN 40 (279)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCC
Confidence 4579999998 9999999999998873 25788898754
No 155
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.22 Score=44.62 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...++|.|+||+|.+|.++|..|+.++. +++++|.+.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~ 74 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE 74 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 3457899999999999999999999885 899999876
No 156
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=92.68 E-value=0.15 Score=45.37 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.-+|+|+|. |.||+-++-+|+..|+ .+|.|+|-+.
T Consensus 30 ~~~V~VvGi-GGVGSw~veALaRsGi-g~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGI-GGVGSWAVEALARSGI-GRITLIDMDD 64 (263)
T ss_pred hCcEEEEec-CchhHHHHHHHHHcCC-CeEEEEeccc
Confidence 359999999 9999999999999995 7899999865
No 157
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.68 E-value=0.15 Score=49.79 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
-.||+|||+ |..|..+|..++..++ +++|+|+++
T Consensus 7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~ 40 (507)
T PRK08268 7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARA 40 (507)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence 358999999 9999999999999997 899999987
No 158
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=92.66 E-value=0.24 Score=42.58 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=37.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH 79 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~ 79 (248)
.+.++|.|+|++|++|.+++..|+.++. +++++|.+. ......++.+
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHh
Confidence 3567999999999999999999999875 899999876 3334445544
No 159
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=92.58 E-value=0.3 Score=41.59 Aligned_cols=56 Identities=25% Similarity=0.298 Sum_probs=32.9
Q ss_pred EEEEEcCCCccHHHHHH--HHHhCCCc--ceEEEEecCC-----chhhHhhhcCc-cCCCeEEEEcC
Q psy14621 35 KVMVAGASGGIGQPLSL--LLKQSPLV--DHLSLYDIVH-----TPGVAADLSHI-ESKAHVQAFNG 91 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~--~l~~~~l~--~elvLiDi~~-----a~g~a~DL~~~-~~~~~v~~~~~ 91 (248)
||+|||| |.+-.+... .+...+-. +||+|+|+++ ....+.-+... ..+.+|..+++
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd 66 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTD 66 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESS
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 8999999 877555332 34443333 4999999998 22233333222 23567777765
No 160
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.54 E-value=0.28 Score=35.97 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
....|++|+|+ |.+|..++..|.+.+ ..++.++|.
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 34569999999 999999999999985 568999987
No 161
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.53 E-value=0.14 Score=47.26 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++||+|||+ |..|.++|..|...+ +++++..++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~ 39 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSA 39 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCH
Confidence 45689999999 999999999999887 366777654
No 162
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.52 E-value=0.15 Score=47.11 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhC---CCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQS---PLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~---~l~~elvLiDi~ 68 (248)
++.+|.|||| |-.|.++|+.|..+ ++ .++|+|..
T Consensus 2 ~~~dv~IvGa-G~aGl~~A~~L~~~~~~G~--~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGG-GMAGATLALALSRLSHGGL--PVALIEAF 38 (395)
T ss_pred CcCCEEEECc-CHHHHHHHHHhhhcccCCC--EEEEEeCC
Confidence 4568999999 99999999999988 87 89999984
No 163
>PLN02650 dihydroflavonol-4-reductase
Probab=92.48 E-value=0.19 Score=45.84 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+||+|+||++++-.|+.++. ++++++.+.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~ 39 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDP 39 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCc
Confidence 446999999999999999999999875 777776654
No 164
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.48 E-value=0.18 Score=46.26 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||.|.|+||.||++++..|...+. +++.+|-..
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~ 34 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLS 34 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC
Confidence 6899999999999999999999987 899999754
No 165
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.44 E-value=0.21 Score=44.18 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=29.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|.|+|++|+||.+++..|.+++. +++.+|...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~ 34 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLR 34 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCC
Confidence 499999999999999999999865 888888754
No 166
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.40 E-value=0.24 Score=41.88 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+++|.|+||+|.+|..++..|..++. ++++++.++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~ 39 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE 39 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 346899999999999999999999986 699999876
No 167
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.39 E-value=0.2 Score=44.57 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||.|+|++|++|.+++..|..++. +++.+|.++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~ 34 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPT 34 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecC
Confidence 5899999999999999999999884 788888764
No 168
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.35 E-value=0.16 Score=45.53 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=30.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCC--cceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPL--VDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l--~~elvLiDi~~ 69 (248)
+||++||+ |++|.+++..|...+. ..+|..+|.++
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~ 39 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNV 39 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCH
Confidence 58999999 9999999999998885 35799999866
No 169
>PRK06194 hypothetical protein; Provisional
Probab=92.34 E-value=0.26 Score=43.38 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++|.|+||+|+||.++|..|..++. +++++|.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~ 40 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQ 40 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 46899999999999999999999985 799999875
No 170
>PRK08163 salicylate hydroxylase; Provisional
Probab=92.34 E-value=0.18 Score=46.60 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+.+|.|||| |-.|.++|..|...++ ++.++|..+
T Consensus 3 ~~~~V~IvGa-GiaGl~~A~~L~~~g~--~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGG-GIGGLAAALALARQGI--KVKLLEQAA 37 (396)
T ss_pred CCCeEEEECC-cHHHHHHHHHHHhCCC--cEEEEeeCc
Confidence 3469999999 9999999999999997 799999865
No 171
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.33 E-value=0.18 Score=47.98 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||+|||+ |+-|.++|..|...+--.+|.|+|..+
T Consensus 1 m~~VVIIGg-G~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGA-VAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECC-cHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 469999999 999999999998764445899999874
No 172
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.26 Score=41.86 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++|.|+||+|.+|..++..|+.++. ++++++.++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~ 40 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQ 40 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCH
Confidence 46899999999999999999998875 799999876
No 173
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=92.27 E-value=0.16 Score=45.96 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||. |..|.++|..|...+. ++.++|.++
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~ 33 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQ 33 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 58999999 9999999999999885 889999986
No 174
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=92.26 E-value=0.2 Score=50.36 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~ 69 (248)
.+++||.|+||+|+||++++..|... +. +++.+|.+.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~ 350 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGS 350 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCc
Confidence 56789999999999999999988874 44 777777644
No 175
>PLN02697 lycopene epsilon cyclase
Probab=92.26 E-value=0.25 Score=48.66 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=44.0
Q ss_pred hhhhhhh------ccCccccccccccC--CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 11 QPLSLLL------KQSPLVDHLSLYDI--NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 11 ~~~~~~~------~~~~~~~~~~~~~~--~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
-+|.+++ +|.+|....+..+. ...-|.|||| |-.|.++|..|+..++ +++|+|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGa-GPAGLalA~~Lak~Gl--~V~LIe~~ 140 (529)
T PLN02697 78 LLFVQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGC-GPAGLALAAESAKLGL--NVGLIGPD 140 (529)
T ss_pred hhHHHHHhcCCccccccccccCCCCCcccCcccEEEECc-CHHHHHHHHHHHhCCC--cEEEecCc
Confidence 4567766 67778877766642 3468999999 9999999999999987 78899864
No 176
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.16 E-value=0.18 Score=44.38 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCC--cceEEEE-ecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPL--VDHLSLY-DIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l--~~elvLi-Di~~ 69 (248)
|||++||+ |++|.+++..|...+. ..+++.+ |.++
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~ 38 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNP 38 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCH
Confidence 68999998 9999999999998875 3478888 7765
No 177
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.15 E-value=0.23 Score=46.29 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+..+|.|+||+|++|+.++-.|..+.-+.+|++++.++
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~ 191 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ 191 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence 455799999999999999999998653356899999875
No 178
>PRK06184 hypothetical protein; Provisional
Probab=92.10 E-value=0.2 Score=48.33 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|||| |-+|.++|..|..+++ +++|+|..+
T Consensus 3 ~~dVlIVGa-GpaGl~~A~~La~~Gi--~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGA-GPTGLTLAIELARRGV--SFRLIEKAP 36 (502)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence 468999999 9999999999999998 799999865
No 179
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.09 E-value=0.19 Score=44.39 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCc-ceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLV-DHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~-~elvLiDi~~ 69 (248)
++||+|||+ |++|.+++..|...+.. .++.++|.++
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 479999999 99999999999887632 4788999876
No 180
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.08 E-value=0.2 Score=45.90 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=28.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.|+|||+ |-+|.++|+.|++.+. +++|+|...
T Consensus 2 dv~IIG~-Gi~G~s~A~~L~~~G~--~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGA-GILGLAHAYAAARRGL--SVTVIERSS 33 (365)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 5899999 9999999999999875 799999764
No 181
>PRK07680 late competence protein ComER; Validated
Probab=92.08 E-value=0.18 Score=44.90 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~ 69 (248)
|||+|||+ |++|.+++..|...+.+ .++.++|.++
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~ 37 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP 37 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH
Confidence 58999998 99999999999988743 4799999876
No 182
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=92.07 E-value=0.2 Score=46.84 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|.|||| |-+|.++|..|.++++ ++.|+|..+
T Consensus 3 ~dV~IVGa-G~aGl~~A~~L~~~G~--~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQS 35 (390)
T ss_pred ceEEEECc-cHHHHHHHHHHHHCCC--CEEEEECCC
Confidence 58999999 9999999999999997 789999765
No 183
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.04 E-value=0.23 Score=46.29 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|||| |-.|.++|..|...++ ++.|+|..+
T Consensus 18 ~~dV~IvGa-G~aGl~~A~~L~~~G~--~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGG-GIVGLTLAAALKDSGL--RIALIEAQP 51 (415)
T ss_pred ccCEEEECc-CHHHHHHHHHHhcCCC--EEEEEecCC
Confidence 468999999 9999999999999997 899999765
No 184
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.03 E-value=0.21 Score=46.19 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|||+ |-+|.++|..|...++ +++|+|..+
T Consensus 4 ~~~dViIvGg-G~aGl~~A~~La~~G~--~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGG-GMVGAALALGLAQHGF--SVAVLEHAA 38 (391)
T ss_pred ccccEEEECc-CHHHHHHHHHHhcCCC--EEEEEcCCC
Confidence 4569999999 9999999999999987 799999754
No 185
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.03 E-value=0.27 Score=42.69 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCC--cceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPL--VDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l--~~elvLiDi~ 68 (248)
+.+||+|||+ |++|.+++..+...+. ..+++.++.+
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 4579999998 9999999999887753 3457777764
No 186
>PRK07588 hypothetical protein; Provisional
Probab=92.03 E-value=0.19 Score=46.58 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||.|||+ |-.|.++|..|+++++ ++.|+|..+
T Consensus 1 ~~V~IVGg-G~aGl~~A~~L~~~G~--~v~v~E~~~ 33 (391)
T PRK07588 1 MKVAISGA-GIAGPTLAYWLRRYGH--EPTLIERAP 33 (391)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCC--ceEEEeCCC
Confidence 48999999 9999999999999987 799999765
No 187
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.02 E-value=0.17 Score=46.85 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=29.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.+|.|||| |-+|.++|..|...++ ++.|+|..
T Consensus 2 ~dV~IvGg-G~~Gl~~A~~L~~~G~--~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGC-GLSGMLTALSFAQKGI--KTTIFESK 33 (374)
T ss_pred ccEEEECC-CHHHHHHHHHHHcCCC--eEEEecCC
Confidence 57999999 9999999999999997 89999964
No 188
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.01 E-value=0.19 Score=46.77 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=29.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~ 69 (248)
..|+|||| |-+|.++|+.|+.+ +. +++|+|..+
T Consensus 3 ~dVvIIGg-Gi~G~s~A~~La~~~~g~--~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGG-GIVGLSTAMQLQERYPGA--RIAVLEKES 37 (393)
T ss_pred ccEEEECC-cHHHHHHHHHHHHhCCCC--eEEEEeCCC
Confidence 48999999 99999999999988 64 899999864
No 189
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.99 E-value=0.2 Score=44.24 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=30.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||.|||+ |.+|..++..|+..|+ .+|.++|-+.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gv-g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGF-GQIHVIDMDT 33 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899999 9999999999999995 7999999865
No 190
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.98 E-value=0.19 Score=51.21 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
-.||+|||| |..|..+|+.++..|+ +++|+|+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQ 346 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCH
Confidence 368999999 9999999999999997 899999987
No 191
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.97 E-value=0.25 Score=42.93 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++||.|+||+|++|..++-.|..++. +++++..+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~ 51 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDV 51 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCH
Confidence 467999999999999999999998874 666665543
No 192
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.97 E-value=0.19 Score=49.13 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
-.||+|||+ |..|..+|..++..+. +++|+|+++
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRA 38 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence 358999999 9999999999999997 899999987
No 193
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.95 E-value=0.27 Score=44.16 Aligned_cols=36 Identities=25% Similarity=0.103 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|+||++++..|..++. ++++++.+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~ 39 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDP 39 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCC
Confidence 457999999999999999999999885 676666554
No 194
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=91.93 E-value=0.24 Score=42.70 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|+|.|+||+|.+|.++|..|..++. +++++|.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5899999999999999999999885 799999875
No 195
>PRK07045 putative monooxygenase; Reviewed
Probab=91.92 E-value=0.23 Score=46.06 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|||| |-.|.++|..|.++++ +++|+|..+
T Consensus 4 ~~~~V~IiGg-GpaGl~~A~~L~~~G~--~v~v~E~~~ 38 (388)
T PRK07045 4 NPVDVLINGS-GIAGVALAHLLGARGH--SVTVVERAA 38 (388)
T ss_pred ceeEEEEECC-cHHHHHHHHHHHhcCC--cEEEEeCCC
Confidence 4569999999 9999999999999998 799999766
No 196
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.89 E-value=0.24 Score=42.49 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++|.|+||+|.+|..++..|+.++. +++++|.++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDV 35 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCH
Confidence 35899999999999999999999985 789999876
No 197
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.87 E-value=0.23 Score=46.28 Aligned_cols=35 Identities=40% Similarity=0.641 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gv-g~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGV-GHITIIDDDT 62 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 469999999 9999999999999996 6899999875
No 198
>PRK07538 hypothetical protein; Provisional
Probab=91.85 E-value=0.21 Score=46.91 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|+|.|||| |-.|.++|..|.++++ +++++|..+
T Consensus 1 ~dV~IVGa-G~aGl~~A~~L~~~G~--~v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGG-GIGGLTLALTLHQRGI--EVVVFEAAP 33 (413)
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC--cEEEEEcCC
Confidence 58999999 9999999999999997 799999865
No 199
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.84 E-value=0.34 Score=41.81 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+++.|+||+|.+|.++|..|+.++. ++++.|.++
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~ 43 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA 43 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence 456899999999999999999999885 899999876
No 200
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.84 E-value=0.2 Score=51.05 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.-.||+|||| |..|..+|+.++..++ +++|+|+++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQ 346 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCH
Confidence 4469999999 9999999999999998 899999987
No 201
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.80 E-value=0.27 Score=42.05 Aligned_cols=36 Identities=19% Similarity=0.476 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++++|.|+||+|+||..++..|+.++. +++++|.+.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~ 37 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNR 37 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence 356899999999999999999999886 799999876
No 202
>KOG1430|consensus
Probab=91.79 E-value=0.27 Score=46.19 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++.+|.|+|++|++|.++...|..++..-||.++|..+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~ 40 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTP 40 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCc
Confidence 45699999999999999999999999888999999976
No 203
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.77 E-value=0.22 Score=47.04 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+ |+.|.++|..|...+.--++.|+|.++
T Consensus 1 ~~vvIIGg-G~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 1 MKIIIIGG-TAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred CeEEEECC-cHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 58999999 999999999998765444899999875
No 204
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.77 E-value=0.21 Score=45.24 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||. |.+|+++|..|...+. ++.++|.++
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~ 33 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNP 33 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCH
Confidence 58999999 9999999999999885 799999976
No 205
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.76 E-value=0.22 Score=45.06 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||+|||. |++|.++|..|...+. ++.++|+++
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNP 34 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence 49999999 9999999999999885 899999986
No 206
>PRK09242 tropinone reductase; Provisional
Probab=91.75 E-value=0.59 Score=40.37 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=40.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCCeEEEE
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAF 89 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~ 89 (248)
+.+++.|+|++|.||..++..|+.++. ++++++.+. .+....++....+..++..+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence 456899999999999999999999985 799999876 33444455443223344433
No 207
>PRK05717 oxidoreductase; Validated
Probab=91.70 E-value=0.32 Score=42.07 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++|.|+|++|.||.++|..|..++. +++++|.++
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~ 44 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDR 44 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCH
Confidence 45899999999999999999999884 899999765
No 208
>PRK06185 hypothetical protein; Provisional
Probab=91.64 E-value=0.23 Score=46.17 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...|+|||+ |-+|.++|+.|+..++ +++|+|.++
T Consensus 6 ~~dV~IvGg-G~~Gl~~A~~La~~G~--~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGG-GPAGMMLGLLLARAGV--DVTVLEKHA 39 (407)
T ss_pred cccEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence 358999999 9999999999999987 799999764
No 209
>PRK06057 short chain dehydrogenase; Provisional
Probab=91.60 E-value=0.32 Score=42.08 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.+|.+++..++.++. +++++|.+.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 346899999999999999999999885 799999876
No 210
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.60 E-value=0.5 Score=40.82 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|.|+|++|.||.++|..|+.++. +++++|.+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~ 36 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINS 36 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 4799999999999999999999985 899999876
No 211
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.53 E-value=0.38 Score=40.56 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.||..++..|++++. +++++|.++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~ 41 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA 41 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence 356899999999999999999999985 699999876
No 212
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.52 E-value=0.37 Score=41.33 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|+|++|.+|.+++..|..++. +++++|.++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~ 38 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLND 38 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 46899999999999999999999886 899999876
No 213
>PLN02253 xanthoxin dehydrogenase
Probab=91.50 E-value=0.37 Score=42.32 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=33.9
Q ss_pred ccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 27 SLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 27 ~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+....+.+++.|+|++|.||.++|..|+.++. +++++|.++
T Consensus 12 ~~~~l~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~ 52 (280)
T PLN02253 12 PSQRLLGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQD 52 (280)
T ss_pred cccccCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 33334456899999999999999999999885 799999865
No 214
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.49 E-value=0.22 Score=45.65 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
|||+|+|| |.||+.+++.|.+.+ .++.++-..
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g--~~V~~~~R~ 32 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG--HDVTLLVRS 32 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC--CeEEEEecH
Confidence 69999999 999999999999999 345555443
No 215
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=91.46 E-value=0.3 Score=45.16 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...+||+|||. |.+|.++|..|...+. +++.+|.++
T Consensus 144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~ 179 (330)
T PRK12480 144 VKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYP 179 (330)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCh
Confidence 35679999999 9999999999998775 899999875
No 216
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.45 E-value=0.21 Score=47.18 Aligned_cols=36 Identities=36% Similarity=0.629 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gv-g~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGV-GTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence 3469999999 9999999999999995 6899999764
No 217
>PRK08251 short chain dehydrogenase; Provisional
Probab=91.45 E-value=0.57 Score=40.12 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|.|+|++|.+|.++|..|..++. ++++++.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~ 36 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRT 36 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 5799999999999999999999884 799999876
No 218
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.42 E-value=0.33 Score=45.62 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=35.1
Q ss_pred cccccCCCcEEEEEcCCCccHHHHHHHHHhCCC-----cceEEEEecCC
Q psy14621 26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPL-----VDHLSLYDIVH 69 (248)
Q Consensus 26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l-----~~elvLiDi~~ 69 (248)
|+......+||+|||+ |.=|+++|..|..++. -.++.|+..++
T Consensus 4 ~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 4 FQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred hhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 5555556789999999 9999999999998862 24888988876
No 219
>KOG1371|consensus
Probab=91.40 E-value=0.27 Score=45.46 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..|-|+|+||+||+++++.|..++. +++.+|-..
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~ 36 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLN 36 (343)
T ss_pred cEEEEecCCcceehHHHHHHHhCCC--cEEEEeccc
Confidence 5799999999999999999999986 788888543
No 220
>PRK07411 hypothetical protein; Validated
Probab=91.39 E-value=0.23 Score=47.01 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDV 72 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 469999999 9999999999999996 7999999864
No 221
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=91.35 E-value=0.21 Score=45.75 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=30.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||.|+|+ |.+|+.+|..|+.-|+ .+|.|+|-+.
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aGV-g~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWGV-RHITFVDSGK 33 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence 7999999 9999999999999995 6899999764
No 222
>PRK14851 hypothetical protein; Provisional
Probab=91.34 E-value=0.22 Score=50.48 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|+|+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus 42 ~~~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~ 77 (679)
T PRK14851 42 AEAKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQ 77 (679)
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCE
Confidence 3569999999 9999999999999997 8999999654
No 223
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.33 E-value=0.61 Score=40.72 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.||.+++..|+.++. ++++++.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~ 41 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNP 41 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 457999999999999999999999986 799999865
No 224
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.30 E-value=0.64 Score=40.68 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..|.|+||+|.+|.+++..|+.++. ++++++.+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 37 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP 37 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 34689999999999999999999985 788888765
No 225
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.29 E-value=0.38 Score=41.86 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+||+|.+|.++|..|+..+. +++++|.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 456999999999999999999999985 799999865
No 226
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=91.24 E-value=0.27 Score=46.28 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||.|||| |-.|+++|..|+..++ +++|+|...
T Consensus 1 ~~VvIVGa-GPAG~~aA~~la~~G~--~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGG-GPAGASAAETLASAGI--QTFLLERKP 33 (398)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--cEEEEecCC
Confidence 48999999 9999999999999997 799999754
No 227
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.23 E-value=0.26 Score=44.14 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||+|||+ |.+|..+|..|...+. ++.++|.++
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNP 35 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence 58999999 9999999999998875 788999876
No 228
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.23 E-value=0.28 Score=49.87 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~ 69 (248)
+..||+|||| |..|..+|+.++. .++ +++|+|+++
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINP 338 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCH
Confidence 3469999999 9999999999884 787 899999987
No 229
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=91.23 E-value=0.28 Score=43.35 Aligned_cols=33 Identities=12% Similarity=0.318 Sum_probs=28.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||.|+||+|+||..++..|..++. ++..+..++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence 589999999999999999998875 677777665
No 230
>PRK06126 hypothetical protein; Provisional
Probab=91.19 E-value=0.28 Score=47.83 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|||| |-+|.++|+.|..+++ +++|+|...
T Consensus 7 ~~~VlIVGa-GpaGL~~Al~La~~G~--~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGG-GPVGLALALDLGRRGV--DSILVERKD 40 (545)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence 468999999 9999999999999997 799999765
No 231
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.16 E-value=0.38 Score=41.43 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++|.|+|++|.+|.+++..|+.++. ++++++.++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~ 41 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQ 41 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCh
Confidence 46899999999999999999999986 799999877
No 232
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.15 E-value=0.33 Score=43.53 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~ 69 (248)
++||+|||+ |++|.+++..|...+.. .+++++|.++
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~ 38 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSK 38 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCc
Confidence 368999998 99999999999988743 5789998764
No 233
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=91.15 E-value=0.28 Score=45.65 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+|.|||| |-+|.++|+.|.+.++ +++++|..+
T Consensus 2 ~~dV~IvGa-GpaGl~~A~~L~~~G~--~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGA-GPAGLLLGQLLHLAGI--DSVVLERRS 35 (392)
T ss_pred cceEEEECC-CHHHHHHHHHHHhcCC--CEEEEEcCC
Confidence 358999999 9999999999999997 789999764
No 234
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=91.13 E-value=0.31 Score=47.94 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...|.|||+ |-+|.++|+.|+.+++ +++|+|.+.
T Consensus 6 ~~DVvIIGG-Gi~G~~iA~~La~rG~--~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGG-GATGAGIARDCALRGL--RCILVERHD 39 (546)
T ss_pred cccEEEECc-CHHHHHHHHHHHHcCC--eEEEEECCC
Confidence 357999999 9999999999999997 899999865
No 235
>PRK08177 short chain dehydrogenase; Provisional
Probab=91.13 E-value=0.4 Score=40.70 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=30.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+|++|.+|.++|..|+.++. +++++|.++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 4799999999999999999999985 899999876
No 236
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.11 E-value=0.42 Score=41.23 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...++|.|+|++|.||.+++..|+.++. +++++|.++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~ 45 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNA 45 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCH
Confidence 3467999999999999999999999886 899999876
No 237
>PRK12827 short chain dehydrogenase; Provisional
Probab=91.10 E-value=0.39 Score=40.89 Aligned_cols=35 Identities=26% Similarity=0.594 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.+++|.|+||+|.+|..+|..|+.++. ++++++..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~ 39 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIH 39 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCc
Confidence 357999999999999999999999885 78888764
No 238
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=91.09 E-value=0.32 Score=45.33 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~ 69 (248)
+...|+|||| |-+|.++|+.|+.+ +.. +++|+|...
T Consensus 29 ~~~dvvIIGg-Gi~G~s~A~~L~~~~g~~-~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGG-GGHGLATAYYLAKEHGIT-NVAVLEKGW 65 (407)
T ss_pred ccCCEEEECC-cHHHHHHHHHHHHhcCCC-eEEEEEccc
Confidence 4458999999 99999999999985 643 699999864
No 239
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.08 E-value=0.4 Score=41.36 Aligned_cols=36 Identities=19% Similarity=0.502 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.+|..++..|..++. ++++++.++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 457999999999999999999999986 699999865
No 240
>PLN02214 cinnamoyl-CoA reductase
Probab=91.07 E-value=0.35 Score=44.28 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++++|.|+|++|+||++++..|..++. +++.++.+.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~ 44 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNP 44 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCc
Confidence 456899999999999999999999885 677776543
No 241
>PRK06924 short chain dehydrogenase; Provisional
Probab=91.06 E-value=0.39 Score=41.25 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=30.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+|++|.+|.++|..|+.++. ++++++.++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999986 789998765
No 242
>PRK06996 hypothetical protein; Provisional
Probab=91.05 E-value=0.32 Score=45.44 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=32.5
Q ss_pred ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcc--eEEEEecCC
Q psy14621 29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVD--HLSLYDIVH 69 (248)
Q Consensus 29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~--elvLiDi~~ 69 (248)
+.....+|.|||+ |-+|.++|+.|++.++.+ .++|+|...
T Consensus 7 ~~~~~~dv~IvGg-GpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGA-GPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECc-CHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 3444569999999 999999999999987533 699999754
No 243
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=91.04 E-value=1.4 Score=39.67 Aligned_cols=37 Identities=32% Similarity=0.448 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||+|.||+|..|+.+.-++.+.+-..=..-+|.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~ 38 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPG 38 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCC
Confidence 6899999999999999999999888443344556554
No 244
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.03 E-value=0.35 Score=38.67 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=27.6
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|+|+|+ |.+|..+|+.|.+.+. ++.|++..+
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP 31 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc
Confidence 789999 9999999999999775 799998765
No 245
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=91.02 E-value=0.42 Score=40.96 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+||+|.||.++|..|+.++. ++++++.++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~ 39 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE 39 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch
Confidence 457999999999999999999999986 799998765
No 246
>PLN02256 arogenate dehydrogenase
Probab=91.02 E-value=0.35 Score=44.24 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+||+|||+ |.+|.++|..|...+. ++..+|.++
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSD 69 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECcc
Confidence 4579999998 9999999999998774 788999876
No 247
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=91.00 E-value=0.32 Score=46.51 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..|||+|||. |.||..+|..|+. + -+++.+|+++
T Consensus 5 ~~mkI~vIGl-GyvGlpmA~~la~-~--~~V~g~D~~~ 38 (425)
T PRK15182 5 DEVKIAIIGL-GYVGLPLAVEFGK-S--RQVVGFDVNK 38 (425)
T ss_pred CCCeEEEECc-CcchHHHHHHHhc-C--CEEEEEeCCH
Confidence 3589999999 9999999999887 4 4899999987
No 248
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.00 E-value=0.35 Score=41.86 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|.|+||+|.+|..++..|+.++. +++++|.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINE 35 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 4799999999999999999999985 799999765
No 249
>PRK12320 hypothetical protein; Provisional
Probab=90.98 E-value=0.31 Score=49.54 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
|||.|+||+|+||++++..|..++. +++.+|..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~ 33 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQH 33 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCC
Confidence 5899999999999999999998885 78888854
No 250
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.97 E-value=0.27 Score=44.43 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||. |++|.++|..|...+. +++.+|.++
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~ 33 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQ 33 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCH
Confidence 58999999 9999999999999875 789999876
No 251
>KOG2304|consensus
Probab=90.93 E-value=0.28 Score=43.45 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+.|+|||| |..|+-+|...++.++ .+.|+|.++
T Consensus 11 ~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~ 44 (298)
T KOG2304|consen 11 IKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANE 44 (298)
T ss_pred ccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCH
Confidence 458999999 9999999999999998 899999998
No 252
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=90.92 E-value=0.44 Score=41.44 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|+++|+|+ |++|+++|..+...+. |+..--.+.
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRG 34 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCC
Confidence 579999998 9999999999999985 777765544
No 253
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.91 E-value=0.38 Score=41.54 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+|++|.+|.++|..|+.++. +++++|.++
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~ 44 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDP 44 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 456999999999999999999999986 799999876
No 254
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.89 E-value=0.32 Score=45.76 Aligned_cols=35 Identities=37% Similarity=0.557 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|||+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 469999999 9999999999999985 6899999874
No 255
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.89 E-value=0.28 Score=44.69 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=30.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||.|||+ |.+|..++..|+..|+ .+|.|+|-+.
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv-g~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF-RNIHVIDMDT 33 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence 6999999 9999999999999995 7999999764
No 256
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.89 E-value=0.41 Score=41.15 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+|++|.||.+++..|+.++. +++++|.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4688999999999999999999985 899999754
No 257
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=90.88 E-value=0.47 Score=40.39 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..++|.|+||+|++|.+++..|..++. ++++++.+.
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~ 40 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICG 40 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999885 799999875
No 258
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=90.88 E-value=0.37 Score=39.82 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=28.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||+|||+ |.-|.++|..|...+. ++.|+|...
T Consensus 1 ~vvIIGg-G~aGl~aA~~l~~~~~--~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGG-GPAGLSAALELARPGA--KVLIIEKSP 32 (201)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTS--EEEEESSSS
T ss_pred CEEEEec-HHHHHHHHHHHhcCCC--eEEEEeccc
Confidence 7999999 9999999999997776 899997643
No 259
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.87 E-value=0.26 Score=50.39 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.-.||+|||| |..|..+|+.++..++ +++|+|+++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATP 368 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCH
Confidence 3468999999 9999999999999997 899999987
No 260
>PRK07190 hypothetical protein; Provisional
Probab=90.87 E-value=0.33 Score=47.07 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
....|.|||| |-+|.++|..|...++ .++|+|..+
T Consensus 4 ~~~dVlIVGA-GPaGL~lA~~Lar~Gi--~V~llEr~~ 38 (487)
T PRK07190 4 QVTDVVIIGA-GPVGLMCAYLGQLCGL--NTVIVDKSD 38 (487)
T ss_pred ccceEEEECC-CHHHHHHHHHHHHcCC--CEEEEeCCC
Confidence 3468999999 9999999999999997 699999875
No 261
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.86 E-value=0.23 Score=44.50 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||+|||+ |.+|.++|..|+..+. ++.++|.++
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGP 32 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence 6999999 9999999999999885 899999886
No 262
>PRK07890 short chain dehydrogenase; Provisional
Probab=90.84 E-value=0.43 Score=41.06 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..++|.|+|++|.||.++|..|+.++. +++++|.++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~ 39 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTA 39 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 346899999999999999999999996 899999876
No 263
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.84 E-value=0.43 Score=41.27 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+++.|+|++|.+|.++|..|+.++. +++++|.++
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 346899999999999999999999985 799999875
No 264
>PRK09135 pteridine reductase; Provisional
Probab=90.82 E-value=0.46 Score=40.40 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|+||+|++|.+++..|+.++. +++++|...
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~ 40 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRS 40 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCC
Confidence 46899999999999999999999885 788888753
No 265
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.79 E-value=0.28 Score=49.26 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|+|||| |-+|.++|+.|+.++. +++|+|...
T Consensus 261 ~dVvIIGa-GIaG~s~A~~La~~G~--~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGG-GIAGAALALALARRGW--QVTLYEADE 293 (662)
T ss_pred CCEEEECc-cHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 58999999 9999999999999986 799999763
No 266
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=90.77 E-value=0.29 Score=46.79 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...|+|||+ |.+|.++||.|+.+.--.+++|+|...
T Consensus 24 ~~DVvIIGg-Gi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGG-GFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECC-CHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 358999999 999999999999872223899999765
No 267
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.76 E-value=0.31 Score=45.47 Aligned_cols=33 Identities=36% Similarity=0.505 Sum_probs=29.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..|+|||| |-+|.++|+.|...++ +++|+|..+
T Consensus 3 ~dV~IVGa-G~aGl~~A~~L~~~G~--~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGA-GMVGSALALALQGSGL--EVLLLDGGP 35 (405)
T ss_pred ccEEEECc-cHHHHHHHHHHhcCCC--EEEEEcCCC
Confidence 37999999 9999999999999986 899999754
No 268
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.74 E-value=0.42 Score=40.90 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++|.|+|++|.+|.+++..|..++. +++++|.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~ 40 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINA 40 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999999884 799999875
No 269
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.74 E-value=0.37 Score=45.02 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=35.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCCchhhHhhh
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVHTPGVAADL 77 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~a~g~a~DL 77 (248)
.+.+||+||||+|.||..+.-+|...+-+ .+|.++.-.+..|+.+.+
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~ 51 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF 51 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee
Confidence 35579999999999999999999965544 368888766544555533
No 270
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=90.74 E-value=0.31 Score=44.34 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=26.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
|||.|+|++|+||+.++..|..++. ..++.+|.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~ 33 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDK 33 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecC
Confidence 5899999999999999999998774 23555554
No 271
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.69 E-value=0.6 Score=38.96 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=34.0
Q ss_pred cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+........+|+|||. |+||..+|-.|...+. ++.-+|...
T Consensus 29 ~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~ 69 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSP 69 (178)
T ss_dssp TTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSC
T ss_pred CCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccC
Confidence 4444456789999999 9999999999998887 999999977
No 272
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.68 E-value=0.85 Score=39.46 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS 78 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~ 78 (248)
+.++|.|+|++|.+|.++|..|+.++. +++++|.++ .+..+-++.
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIA 52 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 345899999999999999999999985 799999876 333344444
No 273
>PRK07060 short chain dehydrogenase; Provisional
Probab=90.67 E-value=0.47 Score=40.43 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+++.|+|++|.+|..++..|+.++. ++++++.+.
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~ 43 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNA 43 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 456999999999999999999999985 799999865
No 274
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.65 E-value=0.79 Score=41.46 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=33.6
Q ss_pred ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...+.+++.|+||++.||.++|..|+.++. ++++.+.+.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~ 48 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNR 48 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 344567999999999999999999999985 789998876
No 275
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.65 E-value=0.49 Score=41.22 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.||.+++..|..++. +++++|.+.
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~ 44 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTE 44 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 457999999999999999999999986 899999876
No 276
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.64 E-value=0.32 Score=42.70 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=28.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|+|||| |..|.++|..|...+. ++.|+|.+.
T Consensus 2 dvvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGA-GPAGLTAAIYAARANL--KTLIIEGME 33 (300)
T ss_pred cEEEECC-CHHHHHHHHHHHHCCC--CEEEEeccC
Confidence 7999999 9999999999998876 799999654
No 277
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.63 E-value=0.29 Score=45.00 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=30.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||.|||+ |.+|..++..|+..|+ .+|.|+|-+.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv-g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF-GEIHIIDLDT 33 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC-CeEEEEcCCC
Confidence 7999999 9999999999999995 8999999765
No 278
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.62 E-value=0.32 Score=45.58 Aligned_cols=35 Identities=34% Similarity=0.607 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 4569999999 9999999999999995 789999987
No 279
>PRK07856 short chain dehydrogenase; Provisional
Probab=90.59 E-value=0.49 Score=40.83 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+++.|+|++|.||.+++..|+.++. +++++|.+.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~ 40 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRA 40 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 456899999999999999999999886 799999865
No 280
>PLN00016 RNA-binding protein; Provisional
Probab=90.57 E-value=0.41 Score=44.42 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCcEEEEE----cCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVA----GASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~Ii----GaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++||.|+ ||+|+||+.++..|..++. ++..++.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence 34689999 9999999999999999885 788888754
No 281
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=90.57 E-value=0.41 Score=46.01 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+..|.|||| |-.|+++|..|+..++ +++|+|...
T Consensus 37 ~~~~DViIVGa-GPAG~~aA~~LA~~G~--~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGG-GPAGACAAETLAKGGI--ETFLIERKL 72 (450)
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence 34469999999 9999999999999997 799999764
No 282
>PRK08264 short chain dehydrogenase; Validated
Probab=90.56 E-value=0.49 Score=40.26 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...+|.|+|++|.+|..+|..|+.++. .++++++.+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~ 41 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDP 41 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecCh
Confidence 456899999999999999999998884 4688898765
No 283
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=90.55 E-value=0.35 Score=43.10 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=27.7
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.|+||+|+||++++..|...+. ..++++|...
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~ 34 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLK 34 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCC
Confidence 78999999999999999998884 4677788653
No 284
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.54 E-value=0.47 Score=40.60 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+|++|.||..++..|+.++. ++++++.+.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~ 39 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA 39 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence 456899999999999999999999884 789998775
No 285
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=90.51 E-value=0.3 Score=45.64 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.+|.|||| |-+|.++|..|...++ ++.|+|..
T Consensus 5 ~dV~IvGa-G~~Gl~~A~~L~~~G~--~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGG-GMVGLALAAALKESDL--RIAVIEGQ 36 (405)
T ss_pred CCEEEECc-cHHHHHHHHHHHhCCC--EEEEEcCC
Confidence 48999999 9999999999999987 78999974
No 286
>PRK05884 short chain dehydrogenase; Provisional
Probab=90.50 E-value=0.43 Score=40.84 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||+.|+||+|.+|.+++..|..++. +++++|.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999999885 789998865
No 287
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=90.49 E-value=0.39 Score=48.10 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+.+||.|+||+|+||++++..|..++.--+++.+|..
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~ 41 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKL 41 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 4579999999999999999999987433478878753
No 288
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=90.44 E-value=0.37 Score=36.20 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|+|+ |+.|.+++|......=+.-..++|+++
T Consensus 2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~ 38 (96)
T PF02629_consen 2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP 38 (96)
T ss_dssp TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence 4569999999 999999998766654455678899887
No 289
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=90.42 E-value=0.34 Score=45.34 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++.||+|||+ |.-|.++|..|...+.-.+|.|+|...
T Consensus 2 ~~~~vvIIGg-G~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGG-GQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcCcEEEECC-hHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 4568999999 999999999999988766899998753
No 290
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.39 E-value=0.72 Score=41.23 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.||.++|..|+.++. ++++++.+.
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~ 50 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNL 50 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 456899999999999999999999985 788998875
No 291
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=90.39 E-value=0.32 Score=48.85 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+..||.|+|| |.+|..+|..|+.-|+ .+|.|+|-..
T Consensus 336 L~~~kVLIvGa-GGLGs~VA~~La~~GV-g~ItlVD~D~ 372 (664)
T TIGR01381 336 YSQLKVLLLGA-GTLGCNVARCLIGWGV-RHITFVDNGK 372 (664)
T ss_pred HhcCeEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence 34679999999 9999999999999996 7899999754
No 292
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=90.38 E-value=0.28 Score=44.73 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=28.8
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.|+||+|.||+.++..|+..+. .+|+|+|.++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E 33 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDE 33 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-H
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCCh
Confidence 67999999999999999999875 6899999987
No 293
>PRK06500 short chain dehydrogenase; Provisional
Probab=90.35 E-value=0.47 Score=40.49 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|+||+|.+|.+++..|..++. ++++++.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~ 40 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDP 40 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCH
Confidence 46999999999999999999999985 789998875
No 294
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=90.35 E-value=0.48 Score=40.32 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=28.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||.|+|++|.||.++|..|+.++.-..+++.+.+.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~ 36 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHH 36 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCC
Confidence 589999999999999999999885433566666544
No 295
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=90.33 E-value=0.3 Score=45.75 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=29.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||.|||+ |-.|.++|+.|...+.+ +++++|..+
T Consensus 1 ~~V~IiGg-GiaGla~A~~L~~~g~~-~v~v~Er~~ 34 (414)
T TIGR03219 1 LRVAIIGG-GIAGVALALNLCKHSHL-NVQLFEAAP 34 (414)
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCC-CEEEEecCC
Confidence 58999999 99999999999998743 688999865
No 296
>PLN02583 cinnamoyl-CoA reductase
Probab=90.32 E-value=0.52 Score=42.21 Aligned_cols=35 Identities=23% Similarity=0.064 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
..++|.|+||+|+||++++..|..++. ++++++.+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~ 39 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQK 39 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcC
Confidence 346899999999999999999999986 77777764
No 297
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=90.32 E-value=0.32 Score=46.72 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=29.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|+|||| |.+|..+|+.|+..++ ++.|++..+
T Consensus 2 ~VvVIGg-GlAGleaA~~LAr~G~--~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGG-GLAGSEAAWQLAQAGV--PVILYEMRP 33 (433)
T ss_pred CEEEECC-CHHHHHHHHHHHhCCC--cEEEEeccc
Confidence 7999999 9999999999999997 899998655
No 298
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.31 E-value=0.45 Score=41.30 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|+|.|+|++|.+|.++|..|+.++. ++++.|.++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~ 34 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE 34 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 5899999999999999999999985 799999876
No 299
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.30 E-value=0.35 Score=49.22 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH-hCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~-~~~l~~elvLiDi~~ 69 (248)
.-.||+|||| |..|..+|+.++ ..++ +++|+|+++
T Consensus 308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINP 343 (708)
T ss_pred cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCH
Confidence 3469999999 999999999998 7787 899999986
No 300
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=90.27 E-value=0.41 Score=45.18 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++||+|+||+|.+|..+.-+|..++.+ ||.++..++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~ 73 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADR 73 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChh
Confidence 5579999999999999999999999754 788886654
No 301
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.27 E-value=0.5 Score=40.27 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS 78 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~ 78 (248)
+.++|.|+|++|.+|..+|..|..++. ++++++.++ ..-...++.
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~ 52 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALE 52 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence 457999999999999999999999885 788888765 333334443
No 302
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=90.25 E-value=0.39 Score=44.23 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|||| |-.|.++|+.|.+.++ +++++|...
T Consensus 5 ~~dv~IvGg-G~aGl~~A~~L~~~G~--~v~v~E~~~ 38 (388)
T PRK07608 5 KFDVVVVGG-GLVGASLALALAQSGL--RVALLAPRA 38 (388)
T ss_pred cCCEEEECc-CHHHHHHHHHHHhCCC--eEEEEecCC
Confidence 358999999 9999999999999986 799999876
No 303
>PRK06180 short chain dehydrogenase; Provisional
Probab=90.25 E-value=0.48 Score=41.70 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++|.|+|++|.||.+++..|+.++. ++++++.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~ 38 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSE 38 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCH
Confidence 35799999999999999999999885 799999865
No 304
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=90.24 E-value=0.38 Score=43.57 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=29.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||++||. |++|.++|..|...+. ++..+|+++
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~ 33 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGP 33 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 48999999 9999999999999985 788899865
No 305
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=90.24 E-value=0.33 Score=46.08 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=28.3
Q ss_pred EEEEEcCCCccHHHHHHHHHh----CCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQ----SPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~----~~l~~elvLiDi~~ 69 (248)
.|.|||| |-+|.++|+.|++ +++ +++|+|..+
T Consensus 2 DV~IVGa-Gp~Gl~~A~~La~~~~~~G~--~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGG-GPVGLALAAALGNNPLTKDL--KVLLLDAVD 37 (437)
T ss_pred cEEEECC-cHHHHHHHHHHhcCcccCCC--eEEEEeCCC
Confidence 5999999 9999999999998 676 799999843
No 306
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=90.24 E-value=0.37 Score=44.08 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=28.9
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.|||| |-.|.++|+.|++.++ +++++|...
T Consensus 2 ViIvGa-G~aGl~~A~~L~~~G~--~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGG-GMVGLALALALARSGL--KIALIEATP 32 (385)
T ss_pred EEEECC-CHHHHHHHHHHhcCCC--EEEEEeCCC
Confidence 899999 9999999999999997 899999876
No 307
>PRK09186 flagellin modification protein A; Provisional
Probab=90.24 E-value=0.6 Score=40.10 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhh
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADL 77 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL 77 (248)
+.++|.|+||+|.+|.++|..|..++. ++++++.++ ++..+-++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKEALNELLESL 48 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHH
Confidence 346899999999999999999999885 789998765 33334444
No 308
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=90.23 E-value=0.31 Score=43.80 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
|||.|+|++|++|+++...|..++. +++.++..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRS 33 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTT
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCch
Confidence 7999999999999999999998875 67766544
No 309
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=90.22 E-value=0.43 Score=45.36 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...|.|||| |-.|+++|+.|+.+++ +++|+|..+
T Consensus 5 ~~DViIVGa-GpAG~~aA~~La~~G~--~V~llEr~~ 38 (428)
T PRK10157 5 IFDAIIVGA-GLAGSVAALVLAREGA--QVLVIERGN 38 (428)
T ss_pred cCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEEcCC
Confidence 468999999 9999999999999998 899999865
No 310
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.19 E-value=0.6 Score=39.46 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++++|.|+||+|.+|..++-.|.+++. +++++....
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~ 40 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD 40 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 456999999999999999999999886 555544433
No 311
>PRK11445 putative oxidoreductase; Provisional
Probab=90.11 E-value=0.38 Score=44.27 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..|+|||| |-.|+++|..|+.. + +++|+|..+
T Consensus 2 ~dV~IvGa-GpaGl~~A~~La~~-~--~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGL-GPAGSALARLLAGK-M--KVIAIDKKH 33 (351)
T ss_pred ceEEEECC-CHHHHHHHHHHhcc-C--CEEEEECCC
Confidence 57999999 99999999999887 4 799999765
No 312
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.09 E-value=0.36 Score=45.09 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.||.|||| |-.|.++|.+|.+.++ ++.++|..+
T Consensus 3 ~~V~IvGg-GiaGl~~A~~L~~~G~--~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGA-GVAGLSAALELAARGW--AVTIIEKAQ 35 (400)
T ss_pred CcEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence 58999999 9999999999999997 789999765
No 313
>PLN02780 ketoreductase/ oxidoreductase
Probab=90.05 E-value=0.67 Score=42.27 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=36.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH 79 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~ 79 (248)
...+.|+||+|.+|.++|..|+.++. +++|+|.++ .+..+.++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHH
Confidence 46899999999999999999999986 799999987 4444555543
No 314
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=90.03 E-value=0.38 Score=42.24 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=27.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
||.|+|++|+||++++-.|..++. ++++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~ 32 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSS 32 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCc
Confidence 689999999999999999998874 78877664
No 315
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.01 E-value=0.46 Score=38.81 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=28.2
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.|+||+|++|..++-.|..++ -++.++-.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCc
Confidence 7899999999999999999999 4788877654
No 316
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=90.01 E-value=0.39 Score=46.89 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
....+|.|||| |-+|.++|..|..+++ +++++|...
T Consensus 8 ~~~~dV~IVGa-Gp~Gl~lA~~L~~~G~--~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGA-GPVGLTLANLLGQYGV--RVLVLERWP 43 (538)
T ss_pred cCCCCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence 34579999999 9999999999999997 899999875
No 317
>PRK07024 short chain dehydrogenase; Provisional
Probab=90.01 E-value=0.52 Score=40.86 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=30.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+|++|.+|..++..|+.++. +++++|.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA--TLGLVARRT 36 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999999985 799999876
No 318
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=89.99 E-value=2.4 Score=40.80 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEee-EecCCC---CCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621 163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDV---TEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238 (248)
Q Consensus 163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~y---g~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i 238 (248)
+..+++|++||.+ |++.++.+- --+|.- ..|...=+||+++++|++.+..- +|.+.-...++.....=+-.+
T Consensus 319 ~e~a~~ii~Ai~~---~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g-~lP~~~~~l~~~~i~~e~l~v 394 (442)
T COG1486 319 SEYASNIINAIEN---NKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVG-DLPEFVKGLMHTNINVEELTV 394 (442)
T ss_pred HHHHHHHHHHHhc---CCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccC-CCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999 888888775 333332 27999999999999999997655 688888877766554433333
Q ss_pred H
Q psy14621 239 A 239 (248)
Q Consensus 239 ~ 239 (248)
+
T Consensus 395 e 395 (442)
T COG1486 395 E 395 (442)
T ss_pred H
Confidence 3
No 319
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=89.96 E-value=0.54 Score=41.76 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||+|+|++|++|..++..+...+-+.-..++|.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 4799999988999999998887765454455688765
No 320
>PRK07577 short chain dehydrogenase; Provisional
Probab=89.95 E-value=0.67 Score=39.24 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++|.|+|++|.+|..++..|+.++. ++++++.+.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 46899999999999999999999985 799998865
No 321
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=89.94 E-value=0.38 Score=42.09 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=28.1
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.|+||+|+||++++..|..++. +++.++.++
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~ 32 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSP 32 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCC
Confidence 57999999999999999998874 888888866
No 322
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=89.93 E-value=0.4 Score=44.65 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=28.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.|.|||| |-.|+++|+.|++.++ +++|+|..
T Consensus 2 DVvIVGa-GpAG~~aA~~La~~G~--~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGG-GPSGATAAETLARAGI--ETILLERA 32 (388)
T ss_pred eEEEECC-CHHHHHHHHHHHhCCC--cEEEEECC
Confidence 6999999 9999999999999987 79999986
No 323
>PRK06523 short chain dehydrogenase; Provisional
Probab=89.91 E-value=0.62 Score=40.24 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.||.+++..|+.++. ++++++.++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~ 43 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR 43 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence 456899999999999999999999886 799998865
No 324
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=89.88 E-value=0.69 Score=40.17 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..++|.|+|++|.+|.+++..|+.++. +++++|.++
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 446899999999999999999999986 889999876
No 325
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=89.84 E-value=0.45 Score=44.19 Aligned_cols=39 Identities=36% Similarity=0.448 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEE-EEecCCchhh
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLS-LYDIVHTPGV 73 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elv-LiDi~~a~g~ 73 (248)
+||+|+||+|.+|..++..|...+.+ +++ |++..+..|.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk 40 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGK 40 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCC
Confidence 58999999999999999999988766 455 7776553343
No 326
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=89.79 E-value=0.44 Score=44.18 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD 66 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD 66 (248)
++||+|+||+|.+|..++..|...+-++-+.+.|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 4799999999999999999999887665456677
No 327
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.79 E-value=0.65 Score=39.95 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.+|.++|..|..++. ++++++.++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~ 41 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA 41 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 346999999999999999999999884 799999876
No 328
>PRK06841 short chain dehydrogenase; Provisional
Probab=89.79 E-value=0.59 Score=40.20 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.+|.++|..|+.++. ++++++.++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~ 49 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSE 49 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 456899999999999999999999985 799999876
No 329
>PRK07806 short chain dehydrogenase; Provisional
Probab=89.74 E-value=0.7 Score=39.52 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++|.|+||+|++|.+++..|..++. ++++++.+.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~ 40 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQK 40 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 46899999999999999999999885 788887754
No 330
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.72 E-value=0.62 Score=39.54 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+|++|.||+.++..|...+. ++++++.++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346999999999999999999999886 899998876
No 331
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=89.69 E-value=0.42 Score=44.47 Aligned_cols=33 Identities=15% Similarity=0.455 Sum_probs=28.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhCC------CcceEEEEecC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSP------LVDHLSLYDIV 68 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~------l~~elvLiDi~ 68 (248)
||+|||+ |+.|.++|..|+.++ ...++.|+..+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence 7999999 999999999999877 33589999874
No 332
>PRK08278 short chain dehydrogenase; Provisional
Probab=89.67 E-value=0.67 Score=40.80 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+||+|.+|..+|..|+.++. +++++|.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTA 40 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeccc
Confidence 346899999999999999999999985 899999865
No 333
>PRK07478 short chain dehydrogenase; Provisional
Probab=89.66 E-value=0.71 Score=39.80 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS 78 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~ 78 (248)
+..++.|+|++|.+|.++|..|+..+. ++++++.++ .+...-++.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~ 51 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIR 51 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 345899999999999999999999986 799999876 333334444
No 334
>PRK14852 hypothetical protein; Provisional
Probab=89.66 E-value=0.36 Score=50.69 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||.|||+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus 331 ~~srVlVvGl-GGlGs~ia~~LAraGV-G~I~L~D~D~ 366 (989)
T PRK14852 331 LRSRVAIAGL-GGVGGIHLMTLARTGI-GNFNLADFDA 366 (989)
T ss_pred hcCcEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence 3569999999 9999999999999997 8999999765
No 335
>PRK07825 short chain dehydrogenase; Provisional
Probab=89.65 E-value=0.58 Score=40.89 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+||+|.+|..++..|..++. .+++.+.++
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~ 39 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA--RVAIGDLDE 39 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 346899999999999999999999885 688898876
No 336
>PRK07035 short chain dehydrogenase; Provisional
Probab=89.65 E-value=0.65 Score=39.93 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+|++|.+|.+++..|..++. .++++|.+.
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~ 42 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL 42 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 446899999999999999999999985 899999875
No 337
>PRK08017 oxidoreductase; Provisional
Probab=89.59 E-value=0.57 Score=40.22 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|.|+||+|.||.+++..|+.++. ++++++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3799999999999999999999885 788888765
No 338
>PRK07208 hypothetical protein; Provisional
Probab=89.54 E-value=0.46 Score=45.34 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++.+|+|||| |.-|.++|+.|..++. ++++++...
T Consensus 3 ~~~~vvIiGa-GisGL~aA~~L~~~g~--~v~v~E~~~ 37 (479)
T PRK07208 3 NKKSVVIIGA-GPAGLTAAYELLKRGY--PVTVLEADP 37 (479)
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence 4568999999 9999999999999886 799999876
No 339
>PRK08703 short chain dehydrogenase; Provisional
Probab=89.54 E-value=0.69 Score=39.50 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.+|.+++..|+.++. ++++++.++
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 346899999999999999999999886 799999877
No 340
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=89.53 E-value=0.41 Score=46.79 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+|.|||| |-+|.++|+.|...++ +++++|..+
T Consensus 23 ~~dVlIVGa-GpaGl~lA~~L~~~G~--~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGA-GPVGLALAIDLAQQGV--PVVLLDDDD 56 (547)
T ss_pred cCCEEEECC-CHHHHHHHHHHHhCCC--cEEEEeCCC
Confidence 358999999 9999999999999997 799999875
No 341
>PRK06834 hypothetical protein; Provisional
Probab=89.52 E-value=0.49 Score=45.89 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...|.|||| |-+|.++|+.|.+.++ +++++|..+
T Consensus 3 ~~dVlIVGa-Gp~Gl~lA~~La~~G~--~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGG-GPTGLMLAGELALAGV--DVAIVERRP 36 (488)
T ss_pred cceEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence 358999999 9999999999999997 799999764
No 342
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=89.50 E-value=0.48 Score=46.18 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...|.|||+ |-+|.++|+.|+.+++ .++|+|.+.
T Consensus 6 ~~DVvIIGG-Gi~G~~~A~~la~rGl--~V~LvEk~d 39 (508)
T PRK12266 6 TYDLLVIGG-GINGAGIARDAAGRGL--SVLLCEQDD 39 (508)
T ss_pred cCCEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 358999999 9999999999999998 799999865
No 343
>PRK04148 hypothetical protein; Provisional
Probab=89.50 E-value=0.71 Score=37.36 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+||.+||+ | -|.++|-.|+..+. +++.+|+++
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~--~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGF--DVIVIDINE 49 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCC--EEEEEECCH
Confidence 4479999999 9 89889999998875 999999998
No 344
>PRK06953 short chain dehydrogenase; Provisional
Probab=89.47 E-value=0.63 Score=39.38 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++.|+|++|.+|..++-.|+.++. +++++|.+.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~ 35 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDA 35 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCH
Confidence 4789999999999999999998875 799999875
No 345
>PRK08643 acetoin reductase; Validated
Probab=89.44 E-value=0.62 Score=40.15 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++.|+|++|.+|.+++..|+.++. +++++|.+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~ 36 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNE 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4789999999999999999999985 799999876
No 346
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=89.44 E-value=0.51 Score=47.36 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
....|+|||+ |-+|.++|+.|+.+++ +++|+|...
T Consensus 70 ~~~DVvVIGG-Gi~Ga~~A~~lA~rGl--~V~LvE~~d 104 (627)
T PLN02464 70 EPLDVLVVGG-GATGAGVALDAATRGL--RVGLVERED 104 (627)
T ss_pred CccCEEEECC-CHHHHHHHHHHHhCCC--EEEEEeccc
Confidence 3468999999 9999999999999998 799999875
No 347
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=89.44 E-value=0.73 Score=32.45 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 38 VAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 38 IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||| |--|.++|+.|...+. ++.|+|.++
T Consensus 1 IiGa-G~sGl~aA~~L~~~g~--~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGA-GISGLAAAYYLAKAGY--RVTVFEKND 29 (68)
T ss_dssp EES--SHHHHHHHHHHHHTTS--EEEEEESSS
T ss_pred CEee-CHHHHHHHHHHHHCCC--cEEEEecCc
Confidence 8998 9999999999999987 999999887
No 348
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=89.42 E-value=1.7 Score=35.58 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=26.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
+||+|+|+ |.+|..++..+...+-+.-+...|.
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence 58999999 9999999988887665555556664
No 349
>PRK10015 oxidoreductase; Provisional
Probab=89.41 E-value=0.52 Score=44.89 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...|.|||| |..|+++|+.|+..++ +++|+|..+
T Consensus 5 ~~DViIVGg-GpAG~~aA~~LA~~G~--~VlliEr~~ 38 (429)
T PRK10015 5 KFDAIVVGA-GVAGSVAALVMARAGL--DVLVIERGD 38 (429)
T ss_pred ccCEEEECc-CHHHHHHHHHHHhCCC--eEEEEecCC
Confidence 358999999 9999999999999997 799999865
No 350
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.38 E-value=0.56 Score=44.84 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
....||+|||+ |..|.++|+.|...+. ++.|+|..+
T Consensus 138 ~~~~~VvIIGg-GpaGl~aA~~l~~~g~--~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGA-GPAGLTAAHRLARKGY--DVTIFEARD 173 (457)
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEccCC
Confidence 34579999999 9999999999999886 899999765
No 351
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=89.38 E-value=0.49 Score=44.35 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.-|+|||| |-.|+++|+.|++.++ +++|+|...
T Consensus 4 ~DVvIVGa-GPAGs~aA~~la~~G~--~VlvlEk~~ 36 (396)
T COG0644 4 YDVVIVGA-GPAGSSAARRLAKAGL--DVLVLEKGS 36 (396)
T ss_pred eeEEEECC-chHHHHHHHHHHHcCC--eEEEEecCC
Confidence 57999999 9999999999999994 789999865
No 352
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=89.31 E-value=0.79 Score=38.77 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|++|.+++..|..++. +++++..+.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~ 39 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASS 39 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 456999999999999999999999885 566666544
No 353
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.24 E-value=0.73 Score=40.36 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+|++|.+|.+++..|+.++. +++++|.+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~ 44 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ 44 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 446899999999999999999999986 799999875
No 354
>PRK09126 hypothetical protein; Provisional
Probab=89.21 E-value=0.51 Score=43.58 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+|.|||| |-.|.++|..|++.++ +++|+|..+
T Consensus 3 ~~dviIvGg-G~aGl~~A~~L~~~G~--~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGA-GPAGLSFARSLAGSGL--KVTLIERQP 36 (392)
T ss_pred cccEEEECc-CHHHHHHHHHHHhCCC--cEEEEeCCC
Confidence 358999999 9999999999999997 799999764
No 355
>PLN02985 squalene monooxygenase
Probab=89.21 E-value=0.61 Score=45.65 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=32.0
Q ss_pred cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.....+|.|||| |-+|.++|+.|++++. ++.|+|...
T Consensus 40 ~~~~~DViIVGA-G~aGlalA~aLa~~G~--~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGA-GVGGSALAYALAKDGR--RVHVIERDL 76 (514)
T ss_pred cCCCceEEEECC-CHHHHHHHHHHHHcCC--eEEEEECcC
Confidence 345569999999 9999999999999986 899999753
No 356
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.20 E-value=0.53 Score=39.04 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=25.9
Q ss_pred EEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhh
Q psy14621 37 MVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGV 73 (248)
Q Consensus 37 ~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~ 73 (248)
+|||| |.-|.++|+.|...++ +.++++|.+...|.
T Consensus 1 ~IIGa-G~aGl~~a~~l~~~g~-~~v~v~e~~~~~Gg 35 (203)
T PF13738_consen 1 VIIGA-GPAGLAAAAHLLERGI-DPVVVLERNDRPGG 35 (203)
T ss_dssp EEE---SHHHHHHHHHHHHTT----EEEEESSSSSTT
T ss_pred CEECc-CHHHHHHHHHHHhCCC-CcEEEEeCCCCCCC
Confidence 59999 9999999999999997 44999998863333
No 357
>PRK08244 hypothetical protein; Provisional
Probab=89.19 E-value=0.47 Score=45.66 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..|.|||| |-+|.++|..|.+.++ +++|+|..+
T Consensus 3 ~dVlIVGa-GpaGl~lA~~L~~~G~--~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGG-GPVGLMLASELALAGV--KTCVIERLK 35 (493)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence 47999999 9999999999999997 899999865
No 358
>PRK06198 short chain dehydrogenase; Provisional
Probab=89.17 E-value=0.63 Score=40.14 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.||..++..|..++. ..++++|.+.
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r~~ 41 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA-AGLVICGRNA 41 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcCCH
Confidence 456899999999999999999998874 3499999865
No 359
>PLN02686 cinnamoyl-CoA reductase
Probab=89.13 E-value=0.65 Score=43.12 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.+++||.|+|++|+||++++..|..++. +++++..+
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~ 86 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDT 86 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 4567999999999999999999999985 67665444
No 360
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=89.12 E-value=0.57 Score=43.53 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHh--CCCcceEEEEecCCchhhHhh
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQ--SPLVDHLSLYDIVHTPGVAAD 76 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~--~~l~~elvLiDi~~a~g~a~D 76 (248)
+.+||+||||+|.||..+.-+|.. .+.+ ||.++--....|.-+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~-~l~~laS~~saG~~~~ 48 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVG-ELYALASEESAGETLR 48 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCce-EEEEEEccCcCCceEE
Confidence 567999999999999999999998 4644 7888855443344333
No 361
>PRK06182 short chain dehydrogenase; Validated
Probab=89.07 E-value=0.71 Score=40.40 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.+|.++|..|..++. ++++++.+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 37 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY--TVYGAARRV 37 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999885 788888765
No 362
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.07 E-value=0.52 Score=43.63 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=29.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|.|||| |-+|.++|..|...+.--+++|+|..+
T Consensus 2 ~dv~IvGa-G~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGG-GYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECc-cHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 47999999 999999999999985212799999864
No 363
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=89.03 E-value=0.55 Score=45.75 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+...|+|||+ |=+|.++||.|+...--.+|+|+|...
T Consensus 4 ~~~DVvIIGg-GIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 4 SKTDVVLIGG-GIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred ccceEEEECc-HHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 4468999999 999999999999864334899999754
No 364
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=89.00 E-value=0.5 Score=47.85 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++.||.|||| |-.|.++|..|.++++ ++.+||...
T Consensus 79 ~~~~~VlIVGg-GIaGLalAlaL~r~Gi--~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGG-GIGGLVFALAAKKKGF--DVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECC-CHHHHHHHHHHHhcCC--eEEEEeccc
Confidence 35579999999 9999999999999997 799999753
No 365
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.98 E-value=0.57 Score=44.95 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+.|.+|.++|..|...+. ++.++|.++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence 5899998559999999999999885 789999876
No 366
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.95 E-value=0.55 Score=45.59 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..|.|||+ |-+|.++|+.|+.+++ +++|+|...
T Consensus 6 ~~DVvIIGG-Gi~G~~~A~~la~rG~--~V~LlEk~d 39 (502)
T PRK13369 6 TYDLFVIGG-GINGAGIARDAAGRGL--KVLLCEKDD 39 (502)
T ss_pred ccCEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCC
Confidence 358999999 9999999999999997 799999875
No 367
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.94 E-value=0.48 Score=44.09 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.||+|||+ |.+|.++|..|...+. ++.++|.++
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~ 33 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDP 33 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCC
Confidence 47999999 9999999999999986 677788776
No 368
>PRK09072 short chain dehydrogenase; Provisional
Probab=88.92 E-value=0.85 Score=39.58 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+|++|.+|..++..|+.++. +++++|.++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~ 39 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNA 39 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 346899999999999999999999985 799999876
No 369
>PRK08226 short chain dehydrogenase; Provisional
Probab=88.92 E-value=0.69 Score=40.02 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+|++|.+|.+++..|..++. ++++++.+.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~ 40 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA--NLILLDISP 40 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence 346899999999999999999999985 799999875
No 370
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.92 E-value=0.68 Score=39.51 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++++.|+|++|.+|..++..|..++. +++++|.++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 40 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ 40 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999986 799999875
No 371
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.88 E-value=0.79 Score=39.05 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|+|++|.+|.+++..|+.++. ++++++.+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~ 41 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTE 41 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999999986 899999876
No 372
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=88.83 E-value=0.7 Score=39.90 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|+|++|.+|.++|..|+.++. +++++|.+.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~ 40 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKP 40 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCH
Confidence 35899999999999999999999986 799999876
No 373
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.81 E-value=0.48 Score=41.72 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=28.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCC-cceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPL-VDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLiDi~~ 69 (248)
|||+|||+ |++|.+++..|...+. ..++.++|.++
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~ 36 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNA 36 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCH
Confidence 58999998 9999999999998774 34567787765
No 374
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.81 E-value=0.75 Score=36.21 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=29.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|+|++|+.|..++..+...+-..=...+|.++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 699999999999999999999966554455677765
No 375
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=88.81 E-value=0.82 Score=39.14 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+.+++.|+|++|.+|+.++..|+.++. +++++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 3456899999999999999999999885 889998764
No 376
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=88.80 E-value=0.45 Score=42.72 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=29.2
Q ss_pred EEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 38 VAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 38 IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|+|++|++|++++..|..++-..++..+|+.+
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~ 33 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSP 33 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccccc
Confidence 78999999999999999999777899999876
No 377
>PRK05867 short chain dehydrogenase; Provisional
Probab=88.80 E-value=0.76 Score=39.66 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+++.|+|++|.+|.++|..|+.++. ++++.|.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 43 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHL 43 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 456899999999999999999999986 799999876
No 378
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.77 E-value=0.65 Score=40.89 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+||+|.+|.++|..|+.++. ++++++.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~ 38 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKE 38 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 4799999999999999999999885 799999875
No 379
>PRK08219 short chain dehydrogenase; Provisional
Probab=88.77 E-value=0.62 Score=39.10 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++|.|+|++|.+|..++..|+.+ .+++++|.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~r~~ 36 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT---HTLLLGGRPA 36 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh---CCEEEEeCCH
Confidence 358999999999999999999887 4689999765
No 380
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=88.77 E-value=0.78 Score=39.81 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+++.|+|++|.||.++|..|+.++. +++++|.++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999986 799999876
No 381
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=88.74 E-value=0.84 Score=41.01 Aligned_cols=34 Identities=26% Similarity=0.104 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.++|.|+||+|+||++++..|..++. +++++..+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~ 38 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRD 38 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECC
Confidence 46999999999999999999999885 56654433
No 382
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.74 E-value=0.6 Score=45.11 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|+|||| |..|.++|..|...++ ++++++.+.
T Consensus 9 ~~~~VaIIGA-G~aGL~aA~~l~~~G~--~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGA-GAAGLVAARELRREGH--TVVVFEREK 43 (461)
T ss_pred CCCCEEEECC-cHHHHHHHHHHHhcCC--eEEEEecCC
Confidence 3469999999 9999999999999987 899999876
No 383
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.73 E-value=0.56 Score=44.30 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
....+|+|||. |+||+.+|..|...|. ++..+|...
T Consensus 114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~ 149 (378)
T PRK15438 114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPR 149 (378)
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcc
Confidence 35679999999 9999999999998887 899999644
No 384
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=88.71 E-value=0.81 Score=39.56 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++|.|+|++|.||+++|..|..++. +++++|.+.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~ 46 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKA 46 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 46999999999999999999999886 789998865
No 385
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.71 E-value=0.67 Score=43.01 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||+|+||+|.+|..++-.|...+.+ ||++++..+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWF-EVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcCh
Confidence 479999999999999999999988765 788884444
No 386
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.69 E-value=0.92 Score=38.78 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.++|.|+||+|.+|.++|..|+.++. ++++.+.+
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~ 38 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ 38 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence 35899999999999999999999885 67666543
No 387
>PRK05693 short chain dehydrogenase; Provisional
Probab=88.69 E-value=0.69 Score=40.47 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+||+|.+|.+++..|..++. +++++|.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999998885 788998765
No 388
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.69 E-value=0.75 Score=38.02 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++.||+|+|+ |+||...+..+...|. +++.+|.+.
T Consensus 19 ~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP 53 (168)
T ss_dssp -T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred CCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence 4579999998 9999999999999887 788899876
No 389
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=88.69 E-value=0.75 Score=42.29 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+||+|||+ |..|.++|..|...+. ++.++|..+
T Consensus 17 ~~~~VvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~ 51 (352)
T PRK12770 17 TGKKVAIIGA-GPAGLAAAGYLACLGY--EVHVYDKLP 51 (352)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence 3469999999 9999999999999886 899999865
No 390
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.69 E-value=0.65 Score=42.88 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCC-cceEEEEecCCchhhHhhh
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPL-VDHLSLYDIVHTPGVAADL 77 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLiDi~~a~g~a~DL 77 (248)
++||+|+||+|.+|..++-+|..++. ..||+.+-..+..|+.+++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~ 46 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF 46 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee
Confidence 46999999999999999999988532 2367777544434444443
No 391
>KOG1502|consensus
Probab=88.67 E-value=0.4 Score=44.36 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCc
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLV 59 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~ 59 (248)
.+++|+|.||+|+||+.+.-.|.++|.-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~ 32 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT 32 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE
Confidence 5689999999999999999999999973
No 392
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=88.67 E-value=0.78 Score=42.08 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++.||+|||+ |++|...+..+...+-+.=..++|+++
T Consensus 3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~ 39 (302)
T PRK08300 3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDP 39 (302)
T ss_pred CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCCh
Confidence 4679999997 999999888887766555566888876
No 393
>PRK06179 short chain dehydrogenase; Provisional
Probab=88.67 E-value=0.76 Score=39.98 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+|.|+|++|.+|.+++..|..++. ++++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 35899999999999999999999885 789998865
No 394
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=88.66 E-value=0.57 Score=44.36 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++.||+|||+ |+-|.++|..|.... -+|.|||.++
T Consensus 9 ~~~~vVIvGg-G~aGl~~a~~L~~~~--~~ItlI~~~~ 43 (424)
T PTZ00318 9 KKPNVVVLGT-GWAGAYFVRNLDPKK--YNITVISPRN 43 (424)
T ss_pred CCCeEEEECC-CHHHHHHHHHhCcCC--CeEEEEcCCC
Confidence 4569999999 999999988875333 3799999876
No 395
>PRK06398 aldose dehydrogenase; Validated
Probab=88.64 E-value=0.61 Score=40.63 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+|++|.||.++|..|+..+. +++++|.++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~ 40 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKE 40 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 346899999999999999999999985 788888765
No 396
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=88.61 E-value=0.62 Score=44.71 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhh
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADL 77 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL 77 (248)
...+|+|||| |+-|.++|+.|.+.++-+ ++++|.+...|...+.
T Consensus 7 ~~~~v~IIGa-G~sGlaaa~~L~~~g~~~-~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 7 THTDVAIIGA-GQSGLAAAYALKQAGVPD-FVIFEKRDDVGGTWRY 50 (443)
T ss_pred CcccEEEECC-CHHHHHHHHHHHHcCCCc-EEEEEccCCcCCcchh
Confidence 4569999999 999999999999999866 9999988755666555
No 397
>PRK06181 short chain dehydrogenase; Provisional
Probab=88.60 E-value=0.69 Score=40.01 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+|++|.+|..++..|+.++. +++++|.++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~ 35 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNE 35 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999998885 799999876
No 398
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=88.59 E-value=0.63 Score=40.55 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=29.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.|.|||| |..|.++|+.|...++ +++++|...
T Consensus 2 dv~IiGa-G~aGl~~A~~l~~~g~--~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGA-GPAGASAAYRLADKGL--RVLLLEKKS 33 (295)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence 5899999 9999999999999987 799999875
No 399
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=88.54 E-value=0.87 Score=41.09 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+|++|.||.+++..|+.++. ++++++.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~ 40 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNL 40 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence 356899999999999999999999884 789998765
No 400
>PRK06101 short chain dehydrogenase; Provisional
Probab=88.53 E-value=0.78 Score=39.38 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|.|+|++|.+|..++..|+.++. +++++|.++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~ 35 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQ 35 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCH
Confidence 4799999999999999999999885 799999875
No 401
>PRK12831 putative oxidoreductase; Provisional
Probab=88.52 E-value=0.69 Score=44.56 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+.+||+|||+ |..|.++|+.|...+. +++++|..+
T Consensus 138 ~~~~~V~IIG~-GpAGl~aA~~l~~~G~--~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGS-GPAGLTCAGDLAKMGY--DVTIFEALH 173 (464)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEecCC
Confidence 35679999999 9999999999999986 789998654
No 402
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=88.51 E-value=0.62 Score=43.25 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCCchhh
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVHTPGV 73 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~a~g~ 73 (248)
++||+|+||+|.||+.+.-+|.. ...++++.++-..+..|+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~ 42 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGK 42 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCC
Confidence 36999999999999999999999 666788888877663333
No 403
>PLN02712 arogenate dehydrogenase
Probab=88.49 E-value=0.71 Score=46.76 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++||+|||. |.+|.++|..|...+. +|+.+|.+.
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~ 85 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSD 85 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4579999998 9999999999998884 788999875
No 404
>PRK12937 short chain dehydrogenase; Provisional
Probab=88.42 E-value=0.96 Score=38.46 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+|++|.+|+.+|..|+.++. ++++++.+.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~ 39 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGS 39 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCC
Confidence 456899999999999999999999986 677776543
No 405
>PLN02463 lycopene beta cyclase
Probab=88.41 E-value=0.74 Score=44.33 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=33.2
Q ss_pred cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.+.......|+|||| |-.|.++|..|++.++ +++|+|..+
T Consensus 21 ~~~~~~~~~DVvIVGa-GpAGLalA~~La~~Gl--~V~liE~~~ 61 (447)
T PLN02463 21 FDPSKSRVVDLVVVGG-GPAGLAVAQQVSEAGL--SVCCIDPSP 61 (447)
T ss_pred CCCccccCceEEEECC-CHHHHHHHHHHHHCCC--eEEEeccCc
Confidence 3333334569999999 9999999999999887 899999854
No 406
>PTZ00367 squalene epoxidase; Provisional
Probab=88.39 E-value=0.69 Score=45.92 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...+|.|||| |-+|.++|..|.++++ ++.++|...
T Consensus 32 ~~~dViIVGa-GiaGlalA~aLar~G~--~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGG-SIAGPVLAKALSKQGR--KVLMLERDL 66 (567)
T ss_pred cCccEEEECC-CHHHHHHHHHHHhcCC--EEEEEcccc
Confidence 4579999999 9999999999999987 899999753
No 407
>PRK06949 short chain dehydrogenase; Provisional
Probab=88.39 E-value=0.88 Score=39.08 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..++|.|+|++|.||.+++..|+.++. ++++++.++
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 357999999999999999999999886 788998875
No 408
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=88.37 E-value=0.7 Score=41.81 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhh
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADL 77 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL 77 (248)
..+|.|+|| |..+.++++.|+..+. .+|.++|.+. ++..+-++
T Consensus 127 ~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~ 171 (283)
T PRK14027 127 LDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVI 171 (283)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHH
Confidence 468999999 9999999999998884 6899999876 44444444
No 409
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.34 E-value=0.72 Score=39.43 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+|++|.+|..++..|..++. ++++++.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999886 799999876
No 410
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.27 E-value=0.71 Score=44.19 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||+|||+ |..|.++|+.|...+. ++.++|..+
T Consensus 132 ~~~~V~IIG~-G~aGl~aA~~l~~~G~--~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGA-GPAGLACASELAKAGH--SVTVFEALH 166 (449)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence 4579999999 9999999999999886 899999764
No 411
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=88.25 E-value=0.67 Score=45.29 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
....|+|||+ |-+|.++|+.|+...-..+++|+|...
T Consensus 44 ~~~DVvIIGG-GI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 44 DVYDVVIVGG-GVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred CcccEEEECc-cHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 3469999999 999999999999864334899999853
No 412
>PRK07578 short chain dehydrogenase; Provisional
Probab=88.25 E-value=0.76 Score=38.20 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=28.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|++.|+|++|.+|..+|..|..+ .++++++.++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~---~~vi~~~r~~ 33 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR---HEVITAGRSS 33 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc---CcEEEEecCC
Confidence 47999999999999999999887 4788888754
No 413
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=88.23 E-value=0.62 Score=42.82 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=29.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCC-CcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSP-LVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~-l~~elvLiDi~~ 69 (248)
.|.|||| |-.|.++|..|..++ + +++++|...
T Consensus 1 dv~IvGa-G~aGl~~A~~L~~~G~~--~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGG-GLVGLSLALALSRLGKI--KIALIEANS 33 (382)
T ss_pred CEEEECc-cHHHHHHHHHHhcCCCc--eEEEEeCCC
Confidence 3899999 999999999999999 8 899999865
No 414
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=88.20 E-value=0.68 Score=40.93 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=26.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
||.|+||+|+||..++..|..++. +++++|.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~ 31 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDN 31 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeC
Confidence 689999999999999999988875 6777764
No 415
>PRK07062 short chain dehydrogenase; Provisional
Probab=88.19 E-value=1.5 Score=37.97 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS 78 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~ 78 (248)
+...+.|+|+++.+|.++|..|+.++. ++++++.++ .+....++.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLR 53 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 346899999999999999999999986 789999876 333344444
No 416
>PRK06701 short chain dehydrogenase; Provisional
Probab=88.18 E-value=0.98 Score=40.31 Aligned_cols=37 Identities=14% Similarity=0.435 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+.++|.|+||+|.||.++|..|+.++. ++++++.+.
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~ 80 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDE 80 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 3456899999999999999999999885 789998875
No 417
>PRK07201 short chain dehydrogenase; Provisional
Probab=88.18 E-value=0.69 Score=45.86 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=29.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||.|+||+|+||++++..|....-..++..++.+.
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~ 36 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQ 36 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 589999999999999999998533334888888754
No 418
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.17 E-value=0.98 Score=39.95 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...+.|+|++|.||.++|..|+.++. ++++.|.++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~ 40 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDK 40 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45799999999999999999999986 799999876
No 419
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.16 E-value=1 Score=39.40 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.||..++..|+.++. +++++|.+.
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~ 43 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQ 43 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999998885 699999875
No 420
>PRK08265 short chain dehydrogenase; Provisional
Probab=88.16 E-value=0.93 Score=39.47 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+|++|.+|.++|..|+.++. ++++.|.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA 40 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346999999999999999999999986 899999876
No 421
>PRK05650 short chain dehydrogenase; Provisional
Probab=88.14 E-value=0.86 Score=39.78 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+|++|.+|..++..|..++. ++++.|.+.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~ 34 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNE 34 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3789999999999999999999986 788998765
No 422
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.13 E-value=0.72 Score=42.83 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCCchhhHhh
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVHTPGVAAD 76 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~a~g~a~D 76 (248)
+++||+|+||+|.+|..+.-+|..+ +. .+|+++--.+-.|+-+.
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~-~~l~~v~s~~~aG~~l~ 48 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPV-GTLHLLASSESAGHSVP 48 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCc-eEEEEEECcccCCCeec
Confidence 3479999999999999999999953 44 46777755442344333
No 423
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=88.12 E-value=0.6 Score=41.16 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=26.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
||.|+||+|++|.+++-.|...+--.+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 588999999999999998887663346777775
No 424
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.08 E-value=0.81 Score=42.93 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..+||+|||+.|.+|.++|..|...+. ++.++|.+.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCc
Confidence 447999999449999999999999885 789998764
No 425
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=88.07 E-value=0.95 Score=38.41 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.+|..++..|+.++. .+++.+.+.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~ 40 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRV 40 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 456999999999999999999999885 677777654
No 426
>PLN02712 arogenate dehydrogenase
Probab=88.02 E-value=0.76 Score=46.55 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..++||+|||+ |.+|.++|..|...+. +++.+|.+.
T Consensus 367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~ 402 (667)
T PLN02712 367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSD 402 (667)
T ss_pred CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECCh
Confidence 35689999998 9999999999998874 799999875
No 427
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=88.01 E-value=0.73 Score=43.94 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++||+|+|+ |+-|..++..|..+.---+|.|||.+.
T Consensus 2 ~~~~iVIlGg-GfgGl~~a~~l~~~~~~~~itLVd~~~ 38 (405)
T COG1252 2 MKKRIVILGG-GFGGLSAAKRLARKLPDVEITLVDRRD 38 (405)
T ss_pred CCceEEEECC-cHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence 3569999999 999999999999884123899999987
No 428
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.95 E-value=1.1 Score=38.10 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+++.|+|++|.+|.+++..|++++. +++++|.+.
T Consensus 4 ~~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~ 39 (235)
T PRK06550 4 MTKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQD 39 (235)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 346899999999999999999999885 788898865
No 429
>PRK08628 short chain dehydrogenase; Provisional
Probab=87.94 E-value=0.98 Score=38.94 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.+|..+|..|+.++. ++++++.++
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~ 41 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSA 41 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCCh
Confidence 456899999999999999999999985 688888776
No 430
>PRK06196 oxidoreductase; Provisional
Probab=87.92 E-value=0.85 Score=41.05 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+||+|.+|.++|..|+.++. ++++++.+.
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~ 60 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRP 60 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999985 789999875
No 431
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.89 E-value=0.92 Score=38.47 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEE-ecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY-DIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi-Di~~ 69 (248)
+.+|.|+|++|.+|..++..|+.++. +++++ +.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~ 40 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE 40 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence 45899999999999999999998875 56666 8765
No 432
>PRK07074 short chain dehydrogenase; Provisional
Probab=87.88 E-value=0.92 Score=39.09 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.++.|+|++|.+|..++..|+.++. +++++|.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999998884 799999875
No 433
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.85 E-value=0.98 Score=37.93 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+||.|+|++|.+|..++..|...+. ++.+++.+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~ 62 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDL 62 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 457999999889999999999998873 899998765
No 434
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=87.84 E-value=0.99 Score=39.04 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.||.++|..|+..+. .+++++.++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~ 49 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT 49 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 456899999999999999999999886 788888764
No 435
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.77 E-value=0.78 Score=43.36 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...+|+|||. |+||..+|..|...+. +++.+|...
T Consensus 115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~ 149 (381)
T PRK00257 115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPR 149 (381)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcc
Confidence 4579999999 9999999999998887 899999754
No 436
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=87.76 E-value=1.5 Score=40.70 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+..+|+|||- |.+|..+|..|...+. +++.+|...
T Consensus 14 LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~ 49 (335)
T PRK13403 14 LQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPG 49 (335)
T ss_pred hCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcc
Confidence 34579999999 9999999999999987 787777543
No 437
>PRK12367 short chain dehydrogenase; Provisional
Probab=87.73 E-value=0.87 Score=39.85 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+||+|.+|.++|..|+.++. +++++|.++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~ 48 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSK 48 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCc
Confidence 346899999999999999999999985 788888865
No 438
>KOG2336|consensus
Probab=87.69 E-value=0.53 Score=42.92 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.-|+|+|. |.||+-+|-.|..+|+ ..|.|+|-++
T Consensus 83 ~aVAiVGv-GGVGSV~AeMLTRCGI-GkLlLfDYDk 116 (422)
T KOG2336|consen 83 FAVAIVGV-GGVGSVTAEMLTRCGI-GKLLLFDYDK 116 (422)
T ss_pred heeEEEec-CchhHHHHHHHHhcCc-ceEEEeecch
Confidence 47999999 9999999999999996 6899999875
No 439
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=87.61 E-value=0.69 Score=48.77 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.+..||+|||+ |.-|.++|+.|+..|. +++++|-.
T Consensus 381 ~tgKKVaVVGa-GPAGLsAA~~La~~Gh--~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGL-GPAGFSLSYYLLRSGH--NVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhCCC--eEEEEccc
Confidence 35679999999 9999999999999987 89999953
No 440
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.58 E-value=0.86 Score=39.81 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCc-ceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLV-DHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~-~elvLiDi~~ 69 (248)
+..||.|+|| |..|..+|+.|...++- +++.++|.+.
T Consensus 24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4469999999 99999999999988852 3899999984
No 441
>PRK08263 short chain dehydrogenase; Provisional
Probab=87.58 E-value=0.98 Score=39.59 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+||+|.+|.+++..|+.++. +++++|.++
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 37 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT 37 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence 4799999999999999999999884 789999875
No 442
>KOG2018|consensus
Probab=87.57 E-value=0.67 Score=42.86 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.=|+|||| |.||+.++..|+..|. ..|.++|-+.
T Consensus 75 syVVVVG~-GgVGSwv~nmL~RSG~-qKi~iVDfdq 108 (430)
T KOG2018|consen 75 SYVVVVGA-GGVGSWVANMLLRSGV-QKIRIVDFDQ 108 (430)
T ss_pred cEEEEEec-CchhHHHHHHHHHhcC-ceEEEechhh
Confidence 46899999 9999999999999984 6899999876
No 443
>PRK07233 hypothetical protein; Provisional
Probab=87.52 E-value=0.66 Score=43.12 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=29.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
||+|||| |--|.++|+.|..++. ++.|+|.+.
T Consensus 1 ~vvVIGa-GiaGL~aA~~L~~~G~--~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGG-GIAGLAAAYRLAKRGH--EVTVFEADD 32 (434)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEeCC
Confidence 6999999 9999999999999986 799999887
No 444
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.51 E-value=0.84 Score=43.92 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...||+|||+ |..|.++|..|...+. +++++|..+
T Consensus 142 ~~~~VvIIGa-GpAGl~aA~~l~~~G~--~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGS-GPAGLAAADQLARAGH--KVTVFERAD 176 (471)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence 4569999999 9999999999999886 799999765
No 445
>PRK09897 hypothetical protein; Provisional
Probab=87.48 E-value=0.78 Score=45.26 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.||+|||+ |.-|.++|..|.....--+|.|+|.+.
T Consensus 1 m~~IAIIGg-Gp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 1 MKKIAIVGA-GPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CCeEEEECC-cHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 358999999 999999999998754323799999865
No 446
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=87.46 E-value=0.61 Score=45.28 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|+|||. |..|.++|..|+.++. ++.++|+++
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTY 34 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 48999999 9999999999999997 899999987
No 447
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.44 E-value=0.81 Score=46.06 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...||+|||+ |..|.++|+.|...+. +++++|..+
T Consensus 192 ~~k~VaIIGa-GpAGl~aA~~La~~G~--~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGA-GPAGLTAAYYLLRKGH--DVTIFDANE 226 (652)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence 3469999999 9999999999999986 799999765
No 448
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.40 E-value=0.68 Score=43.80 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||.|+|+ |.+|.+++..|..++. +++++|.++
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDE 33 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCH
Confidence 68999999 9999999999998876 899999876
No 449
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=87.39 E-value=1.1 Score=38.06 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+|.|+|++|.+|.++|..|..++. .++++|.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence 3789999999999999999999884 788888874
No 450
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.36 E-value=2.2 Score=36.99 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCC-ccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASG-GIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG-~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+++.|+|++| .||.+++..|+.++. ++++.|.+.
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~ 52 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE 52 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 457899999977 699999999999985 588999876
No 451
>PRK07069 short chain dehydrogenase; Validated
Probab=87.35 E-value=0.87 Score=38.87 Aligned_cols=32 Identities=25% Similarity=0.540 Sum_probs=29.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
||.|+|++|.+|.+++..|+.++. +++++|.+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~ 32 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDIN 32 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCC
Confidence 589999999999999999999885 89999987
No 452
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=87.34 E-value=0.91 Score=43.73 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||+|||+ |..|.++|+.|...+. +++++|..+
T Consensus 140 ~~~~V~IIG~-GpaGl~aA~~l~~~G~--~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGA-GPAGLACADILARAGV--QVVVFDRHP 174 (467)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCC--eEEEEecCC
Confidence 4579999999 9999999999999986 689998765
No 453
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.31 E-value=1.1 Score=40.92 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.||.++|..|+.++. ++++++.++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~ 42 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGE 42 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 346899999999999999999999985 799999876
No 454
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=87.26 E-value=0.7 Score=40.97 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=26.5
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.|+||+|+||++++..|..++. .+++++|...
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~ 33 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLR 33 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCC
Confidence 57899999999999999998883 3677777543
No 455
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=87.16 E-value=0.72 Score=42.98 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=28.2
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.|+|+ |+||+.++..|+.+.-..++++.|.+.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~ 33 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP 33 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence 789999 999999999999998777999999987
No 456
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=87.15 E-value=0.86 Score=41.45 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
..||.|+|+ |.+|..+|..|+..|+ .+|.|+|-+.
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCc
Confidence 459999999 9999999999999996 7899999865
No 457
>PRK08589 short chain dehydrogenase; Validated
Probab=87.12 E-value=1.2 Score=39.20 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhc
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLS 78 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~ 78 (248)
+.+++.|+|+++.+|.++|..|+.++. +++++|.++ .+..+.++.
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~ 50 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIK 50 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHH
Confidence 345899999999999999999999985 899999875 333344444
No 458
>PRK06483 dihydromonapterin reductase; Provisional
Probab=87.12 E-value=1.1 Score=38.08 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=30.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++.|+|++|.+|.++|..|+.++. +++++|.++
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 4789999999999999999999886 889999876
No 459
>PRK07832 short chain dehydrogenase; Provisional
Probab=87.08 E-value=0.94 Score=39.64 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+++.|+|++|.+|..++..|+.++. ++++++.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~ 34 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDA 34 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3799999999999999999999885 689999876
No 460
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=87.08 E-value=0.82 Score=42.40 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++||+|||+ |.=|+++|..|+.++ .+++|...++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng--~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNG--HEVRLWGRDE 34 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcC--CeeEEEecCH
Confidence 469999999 999999999999998 5899998876
No 461
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=87.05 E-value=0.84 Score=43.62 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||+ |.-|.+.|..+++.+. +++|+|.+.
T Consensus 1 ~~vvVIG~-G~aG~~aA~~~~~~g~--~V~lie~~~ 33 (458)
T PRK06912 1 SKLVVIGG-GPAGYVAAITAAQNGK--NVTLIDEAD 33 (458)
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCc
Confidence 59999999 9999999999999886 899999754
No 462
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=87.02 E-value=0.84 Score=40.97 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=28.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+|.|+||+|++|.+++..|..++-..+++++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~ 35 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAA 35 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccC
Confidence 58899999999999999999887444677777654
No 463
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=87.00 E-value=0.79 Score=46.03 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~ 69 (248)
..+|.|||| |-+|.++|..|++. ++ ++++||..+
T Consensus 32 ~~dVlIVGA-GPaGL~lA~~Lar~~Gi--~v~IiE~~~ 66 (634)
T PRK08294 32 EVDVLIVGC-GPAGLTLAAQLSAFPDI--TTRIVERKP 66 (634)
T ss_pred CCCEEEECC-CHHHHHHHHHHhcCCCC--cEEEEEcCC
Confidence 569999999 99999999999995 87 799999865
No 464
>PRK12742 oxidoreductase; Provisional
Probab=87.00 E-value=1.3 Score=37.52 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
.++|.|+|++|.||..+|..|+.++. ++++.+..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~ 39 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG 39 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence 46899999999999999999999886 67777653
No 465
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=86.99 E-value=1.2 Score=38.50 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH 79 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~ 79 (248)
..++|.|+|++|.||.+++..|..++. +++++|.+. .+..+.++.+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~ 57 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQ 57 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 357999999999999999999999985 788898765 3333444443
No 466
>PRK05872 short chain dehydrogenase; Provisional
Probab=86.95 E-value=1.4 Score=39.26 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+|++|.||..+|..|+..+. ++++++.++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 43 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEE 43 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 456899999999999999999999985 799999876
No 467
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.95 E-value=1.4 Score=38.61 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+...+.|+|++|.||.++|..|+..+. +++++|.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~ 42 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNE 42 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345789999999999999999999985 799999876
No 468
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=86.94 E-value=0.79 Score=42.31 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=28.2
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|.|||| |-.|.++|+.|...++ +++|+|..+
T Consensus 2 viIiGa-G~AGl~~A~~la~~g~--~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGG-GPAGLAIALELARPGL--RVQLIEPHP 32 (388)
T ss_pred EEEECC-CHHHHHHHHHHHhCCC--eEEEEccCC
Confidence 799999 9999999999998887 899999765
No 469
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=86.94 E-value=1 Score=40.33 Aligned_cols=37 Identities=16% Similarity=0.400 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+..||.|+|+ |.+|.++++.|...+. .++.+++.+.
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~-~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGV-AEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEEeCCH
Confidence 34568999998 9999999999998884 5899999876
No 470
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=86.82 E-value=0.81 Score=40.81 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCC-CcceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSP-LVDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~-l~~elvLiDi~~ 69 (248)
++||+|||+ |++|..++..+...+ -+.-+.++|.++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~ 37 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL 37 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH
Confidence 479999999 999999999888764 233356788876
No 471
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=86.76 E-value=0.83 Score=43.05 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCccHHHHHH-HHHhCCC-cceEEEEecCC
Q psy14621 33 NAKVMVAGASGGIGQPLSL-LLKQSPL-VDHLSLYDIVH 69 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~-~l~~~~l-~~elvLiDi~~ 69 (248)
++||+|+||+|.||..+.- +|....+ ..+++++....
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~ 39 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ 39 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh
Confidence 3699999999999999997 5556665 45788876644
No 472
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=86.76 E-value=0.81 Score=42.98 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=27.8
Q ss_pred cEEEEEcCCCccHH-HHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQ-PLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~-~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+++|| |++|. .+..+|...+ -+|+++|+++
T Consensus 1 mki~~~Ga-Ga~gr~~~~~~l~~~g--~~V~~vd~~~ 34 (381)
T PRK02318 1 MKAVHFGA-GNIGRGFIGKLLADNG--FEVTFVDVNQ 34 (381)
T ss_pred CceEEECC-chhhHHHHHHHHHhCC--CeEEEEECCH
Confidence 69999999 99997 6677887777 3899999865
No 473
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=1.1 Score=43.66 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=46.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcCccCC---CeEEEEcCch
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSHIESK---AHVQAFNGAD 93 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~~~~~---~~v~~~~~~d 93 (248)
+||+|.|| |--|.++|+-|+.+|+ ++.|+.... +=|.+.-..+.+.+ +...+|.+.|
T Consensus 1 ~rVai~Ga-G~AgL~~a~~La~~g~--~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y 61 (485)
T COG3349 1 MRVAIAGA-GLAGLAAAYELADAGY--DVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCY 61 (485)
T ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--ceEEEeccCccCceeeeeecCCCCeeeeeeEEechhH
Confidence 58999999 9999999999999997 899999888 77777767666542 4666777765
No 474
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=86.68 E-value=1 Score=44.41 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
...||+|||+ |.+|.++|+.|...+. +++++|..+
T Consensus 136 ~g~~V~VIGa-GpaGL~aA~~l~~~G~--~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGG-GPAGLSAAYHLRRMGH--AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 4579999999 9999999999999986 689999654
No 475
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=86.62 E-value=1 Score=40.55 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|||| |..+.++++.|...+ +.+|.+++.+.
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL~~~G-~~~i~I~nRt~ 159 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYALASLG-VTDITVINRNP 159 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHHHHcC-CCeEEEEeCCH
Confidence 3468999999 999999999999988 46899999875
No 476
>PRK06482 short chain dehydrogenase; Provisional
Probab=86.54 E-value=1.2 Score=38.91 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=29.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+|++|+||..++..|+.++. .+++++.++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~ 36 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRP 36 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999885 688888764
No 477
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.44 E-value=1 Score=41.45 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+.+||+|||+ |++|.++|..|...++ +++..+..
T Consensus 2 ~~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~ 35 (314)
T TIGR00465 2 KGKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRK 35 (314)
T ss_pred CcCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECc
Confidence 3579999999 9999999999999886 55554443
No 478
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.42 E-value=1.6 Score=37.31 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
+..+|.|+|++|+||++++..|+.++. ++++...
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK 38 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 356999999999999999999998885 5655443
No 479
>PRK06114 short chain dehydrogenase; Provisional
Probab=86.31 E-value=1.6 Score=37.68 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+|++|.||.++|..|+.++. +++++|.+.
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~ 42 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT 42 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 345899999999999999999999985 888999864
No 480
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.29 E-value=1.1 Score=45.16 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||+|||+ |..|.++|+.|...+. ++.++|..+
T Consensus 326 ~~~~VaIIGa-GpAGLsaA~~L~~~G~--~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGA-GPAGLACADVLARNGV--AVTVYDRHP 360 (654)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 4579999999 9999999999999986 689999765
No 481
>PRK09291 short chain dehydrogenase; Provisional
Probab=86.26 E-value=1.3 Score=37.99 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=29.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++|.|+||+|.+|..++..|+.++. ++++++.+.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIA 36 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999884 677777654
No 482
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=86.23 E-value=1 Score=42.26 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+||+|||| |--|.++|+.|...+.--++.|++-.+
T Consensus 1 ~~v~IVGa-GiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGG-GITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECC-CHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 58999999 999999999999987333789998876
No 483
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=86.18 E-value=1.4 Score=37.60 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI 67 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi 67 (248)
++|.|+|++|.+|+.+|..|+.++. ++++.+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 4899999999999999999999885 5666553
No 484
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=86.12 E-value=1 Score=41.74 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.+||+|||. |++|.++|..|...++ +++..+.+.
T Consensus 16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~ 50 (330)
T PRK05479 16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREG 50 (330)
T ss_pred CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCc
Confidence 4579999999 9999999999999987 777777653
No 485
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=86.11 E-value=1.3 Score=42.22 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
++++|.|+||+|.+|.++|..|..++. +++++|.++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~ 212 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNS 212 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 457899999999999999999999885 788888765
No 486
>PRK05865 hypothetical protein; Provisional
Probab=86.09 E-value=1 Score=46.85 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=29.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
|||.|+||+|+||++++..|..++. +++++|.+
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~ 33 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARH 33 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECC
Confidence 5899999999999999999998885 78888865
No 487
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.99 E-value=1.6 Score=39.17 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.+.+++.|+|++|.||.++|..|+.++. ++++.|...
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~ 46 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVAS 46 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCc
Confidence 3457899999999999999999999985 788998754
No 488
>PRK08605 D-lactate dehydrogenase; Validated
Probab=85.91 E-value=1.2 Score=41.16 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHH-hCCCcceEEEEecCC
Q psy14621 31 INNAKVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH 69 (248)
Q Consensus 31 ~~~~KV~IiGaaG~VG~~~a~~l~-~~~l~~elvLiDi~~ 69 (248)
...+||+|||+ |++|.++|..|+ ..+. ++..+|...
T Consensus 144 l~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~ 180 (332)
T PRK08605 144 IKDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFP 180 (332)
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCc
Confidence 45679999999 999999999984 3343 788898765
No 489
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.91 E-value=1.4 Score=38.40 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|.|+||+|.+|.++|..|+.++-. .+++++.++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~ 43 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPD 43 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCc
Confidence 4568999999999999999999887522 788888875
No 490
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.90 E-value=1.3 Score=40.58 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..+|.|+||+|.||.++|..|+.++. +++|++.++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~ 41 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDE 41 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 346899999999999999999999985 799999876
No 491
>PTZ00188 adrenodoxin reductase; Provisional
Probab=85.88 E-value=1.4 Score=43.13 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=29.6
Q ss_pred cCCCcEEEEEcCCCccHHHHHHHH-HhCCCcceEEEEecCC
Q psy14621 30 DINNAKVMVAGASGGIGQPLSLLL-KQSPLVDHLSLYDIVH 69 (248)
Q Consensus 30 ~~~~~KV~IiGaaG~VG~~~a~~l-~~~~l~~elvLiDi~~ 69 (248)
+.+..||+|||+ |.-|.++|..| ++.+. ++.|+|..+
T Consensus 36 ~~~~krVAIVGa-GPAGlyaA~~Ll~~~g~--~VtlfEk~p 73 (506)
T PTZ00188 36 EAKPFKVGIIGA-GPSALYCCKHLLKHERV--KVDIFEKLP 73 (506)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHhcCC--eEEEEecCC
Confidence 345679999999 99999998854 45554 799999876
No 492
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.84 E-value=1.5 Score=37.33 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..++.|+|++|.+|..++..|..++. .++++|.++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 356899999999999999999999885 789999876
No 493
>PRK12744 short chain dehydrogenase; Provisional
Probab=85.82 E-value=1.7 Score=37.60 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
+.++|.|+|++|.||.++|..|+.++. ++++++.+
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~ 41 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYN 41 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecC
Confidence 346899999999999999999998885 55666543
No 494
>PLN02268 probable polyamine oxidase
Probab=85.79 E-value=1 Score=42.36 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
.||+|||| |.-|.++|+.|...+. ++++++-..
T Consensus 1 ~~VvVIGa-GisGL~aA~~L~~~g~--~v~vlEa~~ 33 (435)
T PLN02268 1 PSVIVIGG-GIAGIAAARALHDASF--KVTLLESRD 33 (435)
T ss_pred CCEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCC
Confidence 38999999 9999999999999886 799998876
No 495
>PRK12746 short chain dehydrogenase; Provisional
Probab=85.79 E-value=1.5 Score=37.60 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD 66 (248)
Q Consensus 33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD 66 (248)
.++|.|+|++|.+|+++|..|+.++. ++++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~ 37 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHY 37 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEc
Confidence 46899999999999999999999874 565543
No 496
>PRK09134 short chain dehydrogenase; Provisional
Probab=85.78 E-value=1.7 Score=37.52 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~ 68 (248)
..++|.|+||+|.||.+++..|..++. ++++++..
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~ 42 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNR 42 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 346899999999999999999998885 66666654
No 497
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=85.77 E-value=0.97 Score=46.37 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
|||+|||| |--|.++|.+|...+---+++|++.++
T Consensus 1 m~V~IIGa-GpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 1 MRIVCIGG-GPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred CeEEEECC-CHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 69999999 999999999999873222899999876
No 498
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.74 E-value=1.3 Score=43.04 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+.++|+|||| |+=|.++|..|++.|+ ++.+++.+.
T Consensus 2 ~~~dvvVIGa-G~~GL~aAa~LA~~G~--~V~VlE~~~ 36 (487)
T COG1233 2 PMYDVVVIGA-GLNGLAAAALLARAGL--KVTVLEKND 36 (487)
T ss_pred CCccEEEECC-ChhHHHHHHHHHhCCC--EEEEEEecC
Confidence 4579999999 9999999999999998 899999776
No 499
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=85.72 E-value=0.99 Score=43.43 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=30.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCc----ceEEEEecCC
Q psy14621 35 KVMVAGASGGIGQPLSLLLKQSPLV----DHLSLYDIVH 69 (248)
Q Consensus 35 KV~IiGaaG~VG~~~a~~l~~~~l~----~elvLiDi~~ 69 (248)
||.|||| |.+|..++..|+..|+. .+|.++|-+.
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 6899999 99999999999999973 6899999765
No 500
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=85.72 E-value=1.1 Score=47.59 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69 (248)
Q Consensus 32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~ 69 (248)
+..||+|||+ |.-|.++|+.|...+. ++.|+|..+
T Consensus 538 tgKkVaIIGg-GPAGLsAA~~Lar~G~--~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGA-GPAGLAAAYFLARAGH--PVTVFEREE 572 (1019)
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCC--eEEEEeccc
Confidence 4569999999 9999999999999986 899999765
Done!