RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14621
(248 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 240 bits (614), Expect = 4e-79
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
++ GL+P DV+VPV+GGHAG+TI+PL+SQ P SF +++ LT RIQ GTEVV+AKA
Sbjct: 167 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKA 226
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
GAGSATLSMAYA +FA + ++GL+G++ VIECA+V S VTE +F++ V LG+NGIE+
Sbjct: 227 GAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEV 286
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
LG L+++E+ ++ A EL +I KG F+
Sbjct: 287 YSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 320
Score = 101 bits (253), Expect = 1e-25
Identities = 34/65 (52%), Positives = 48/65 (73%)
Query: 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG 91
KV + GA+GGIGQPL++L+K +PLV L LYD+V+ PGV AD+SH+++ A V+ F G
Sbjct: 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLG 66
Query: 92 ADQLK 96
QL+
Sbjct: 67 QQQLE 71
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 235 bits (603), Expect = 1e-77
Identities = 107/152 (70%), Positives = 126/152 (82%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
+LKGL+P V+VPVIGGHAG TIIPLISQ TP V FP DQL LTGRIQEAGTEVVKAKA
Sbjct: 159 ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
GAGSATLSMAYAGARF FSL+ + G+ V+EC++VKS T+ YFSTP+ LGK GIEKN
Sbjct: 219 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
LG+GK+S FE++++ A+PELK +I KGEEFV
Sbjct: 279 LGIGKISPFEEKMIAEAIPELKASIKKGEEFV 310
Score = 101 bits (254), Expect = 9e-26
Identities = 46/63 (73%), Positives = 52/63 (82%)
Query: 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGAD 93
AKV V GASGGIGQPLSLLLK SPLV L+LYDI HTPGVAADLSHIE++A V+ + G +
Sbjct: 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPE 60
Query: 94 QLK 96
QL
Sbjct: 61 QLP 63
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 228 bits (583), Expect = 1e-74
Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
+LKG P +V VPVIGGH+G+TI+PL+SQ P VSF + ++ LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
G GSATLSM A ARF SL++ L+GE V+ECAYV+ D A +FS P+ LGKNG+E+
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
+G LS FE+ ++ + LKK+IA GEEFV K
Sbjct: 279 KSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
Score = 90.0 bits (224), Expect = 2e-21
Identities = 39/71 (54%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 35 KVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGA 92
KV V GA+GGIGQ L+LLLK Q P LSLYDI TPGVA DLSHI + ++ F+G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 93 DQLKGLNPTDV 103
D L DV
Sbjct: 62 DATPALEGADV 72
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 67.3 bits (165), Expect = 3e-13
Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 18/155 (11%)
Query: 97 GLNPTDV-NVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAG 145
G+ + V N GGH G + S A + ++Q L R+ + G
Sbjct: 167 GIKQSLVTNTRTYGGH-GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGG 225
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVKSDVTEASYFSTPVH 204
++K + S+ S +Y + + GE+ YV E +
Sbjct: 226 ANIIKLRGR--SSFQSPSYVSIEMIRAA---MGGEAFRWPAGCYVNVPGFEHIMMAMETT 280
Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 239
+ K+G++ + ++ E+ +K + L K
Sbjct: 281 ITKDGVKHSDINQLGNEAERAALKESYSHLAKLRD 315
Score = 31.4 bits (72), Expect = 0.21
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTP--GVAADLSH 79
+ K+ + GA+G IG ++ L +L LYD GVA ++ H
Sbjct: 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH 56
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 66.8 bits (164), Expect = 3e-13
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT---PSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
+V ++G H G +P+ S+ + F D+ + L G +QE+ +V++ K
Sbjct: 161 DAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK- 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHLGK 207
G+ A A ++ L V+ + + D F PV LG
Sbjct: 219 --GATEWGPARGVAHMVEAI---LHDTGEVLPASVKLEGEFGHEDT----AFGVPVSLGS 269
Query: 208 NGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
NG+E+ + L D+E++L+ A +L K
Sbjct: 270 NGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301
Score = 32.5 bits (75), Expect = 0.090
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGV----AADLSH 79
KV V GA+G +G + + D + DI AAD +H
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH 50
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 65.2 bits (160), Expect = 1e-12
Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 32/167 (19%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
G++ VN V+G H G + P+ ++ P ++++ + AG ++ +
Sbjct: 158 GVSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITEL 216
Query: 152 KAGA-----GSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
+ + + + A I + + + Y +D+
Sbjct: 217 RGYSSNYGPAAGLVLTVEA--------I--KRDSKRIYPYSLYLQGEYGYNDI----VAE 262
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
P +GK+GIE+ + L L++ EK AV +KK + + +
Sbjct: 263 VPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETLPPQLRE 308
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 64.4 bits (158), Expect = 2e-12
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
G++ D+N V+GGH G ++P++ T P P + + L R + G E+V+
Sbjct: 160 GVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH 218
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
GSA + A + S+ + V+ CA Y + PV L
Sbjct: 219 -LKQGSAFYAPASSVVEMVESI---VLDRKRVLPCAVGLEGQYGIDKT----FVGVPVKL 270
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 246
G+NG+E+ + L + +L++ + + +N E +
Sbjct: 271 GRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKMLESTIG 310
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 63.7 bits (156), Expect = 5e-12
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
+ P DVN ++G H G ++ L T + D +L+A+ R
Sbjct: 168 NVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTAL 226
Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
E+V S ++ A A A S LK V+ C+ Y SD+ +
Sbjct: 227 EIVNLH---ASPYVAPAAAIIEMAESY---LKDLKKVLICSTLLEGQYGHSDI----FGG 276
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
TPV LG NG+E+ + L +L+ EK A+ E K+ A
Sbjct: 277 TPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL 315
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 63.3 bits (155), Expect = 6e-12
Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 26/158 (16%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQATPS-------VSFPDDQLKALTGRIQEAGTEVV 149
G++ +V +IG H G +++PL+S + F + + + ++ G +++
Sbjct: 164 GVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQII 222
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK------SDVTEASYFSTP 202
+ K G + A A + + E ++ AYV DV P
Sbjct: 223 RLK---GGSEFGPAAAILNVVRCI---VNNEKRLLTLSAYVDGEFDGIRDV----CIGVP 272
Query: 203 VHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
V +G++GIE+ + + +L E + + +KK +
Sbjct: 273 VKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 309
Score = 33.7 bits (78), Expect = 0.040
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH----TPGVAADLSH 79
KV + GASG +G +LLL + P + L L H G+ D+
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD 50
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 63.3 bits (155), Expect = 6e-12
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 22/155 (14%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
++ DV ++GGH G T++PL T P D +++ + R + AG E+V
Sbjct: 160 DVSVRDVQALLMGGH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDL 218
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
SA + A A ++ LK ++ CA Y D+ + PV L
Sbjct: 219 MGT--SAWYAPGAAAAEMTEAI---LKDNKRILPCAAYCDGEYGLDDL----FIGVPVKL 269
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
G G+E+ + + L EK +K + + N+
Sbjct: 270 GAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDD 303
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 62.1 bits (152), Expect = 1e-11
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 21/155 (13%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
G++ DV ++GGH G ++PL + P F D+L + R ++ G E+V
Sbjct: 161 GVSVEDVQAMLMGGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL 219
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
GSA + A A A+ ++ LK + V+ A Y +D+ YF PV L
Sbjct: 220 L-KTGSAYYAPAAATAQMVEAV---LKDKKRVMPVAAYLTGQYGLNDI----YFGVPVIL 271
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
G G+EK L L L++ E L+ A+ ++ +
Sbjct: 272 GAGGVEKILEL-PLNEEEMALLNASAKAVRATLDT 305
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 61.4 bits (150), Expect = 2e-11
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
G+ P+DV+ V+GGH G +IPL S T Q+ + + G
Sbjct: 173 GVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGG 231
Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
E+V+ GSA + A + A + LK +V+ C+ Y +++ +
Sbjct: 232 EIVELL-KTGSAFYAPAASAVAMAQAY---LKDSKSVLVCSTYLTGQYNVNNL----FVG 283
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
PV +GKNGIE + + LSD EK L +V ++ +
Sbjct: 284 VPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQNLVQD 322
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 61.4 bits (150), Expect = 3e-11
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 26/160 (16%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
++P DV VIG H G ++PL+ T + QL+ + + +G
Sbjct: 174 SVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGG 232
Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
E+V+ G GSA + A + A S L E VI C+ Y D+ +
Sbjct: 233 EIVRFL-GQGSAYYAPAASAVAMATSF---LNDEKRVIPCSVYCNGEYGLKDM----FIG 284
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
P +G GIE+ + L +L++ EK+ + +V ++
Sbjct: 285 LPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKA 323
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 61.0 bits (149), Expect = 3e-11
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 26/160 (16%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
G+N +DV+ VIGGH G ++P S + +Q+ + + A
Sbjct: 163 GVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWK 221
Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
EV G+A + A A + A + LK + V+ C+ Y + Y
Sbjct: 222 EVADNL-KTGTAYFAPAAAAVKMAEAY---LKDKKAVVPCSAFCSNHYGVKGI----YMG 273
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
P +GKNG+E L L L+ E++L+ ++ E+
Sbjct: 274 VPTIIGKNGVEDILEL-DLTPLEQKLLGESINEVNTISKV 312
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 61.0 bits (149), Expect = 3e-11
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 31/170 (18%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
++ V V+GGH G T++PL + ++L A+ R + G
Sbjct: 164 NVSVQQVQAYVMGGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGG 222
Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA-------Y-VKSDVTEASY 198
E+V GSA + A AG + A S LK + ++ CA Y + D+ +
Sbjct: 223 EIVALL-KTGSAYYAPAAAGIQMAESF---LKDKKMILPCAAKVKAGMYGLDEDL----F 274
Query: 199 FSTPVHLGKNGIEK-NLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
P + NG+ + ++SD E+E ++ ++ +K E +AK
Sbjct: 275 VGVPTEISANGVRPIEV---EISDKEREQLQVSINAIKDLNKAAAEILAK 321
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 61.0 bits (149), Expect = 4e-11
Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 28/161 (17%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
++P V+ ++G H G + S AT DD L L ++
Sbjct: 163 NVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAY 221
Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYFS 200
+++ K G+ + A R + ++ L+ E+ V+ AY+ +D+ Y
Sbjct: 222 DIINLK---GATFYGIGTALMRISKAI---LRDENAVLPVGAYMDGQYGLNDI----YIG 271
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241
TP +G G+++ + LS E + ++ + LKK + G
Sbjct: 272 TPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDG 311
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 61.0 bits (149), Expect = 4e-11
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
L+ D+ V+GGH G ++PL+ + P + P ++L+A+ R ++ G E+V
Sbjct: 169 NLSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG- 226
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
G GSA + A + ++ LK + V+ Y SD+ Y PV L
Sbjct: 227 LLGNGSAYYAPAASLVEMTEAI---LKDQRRVLPAIAYLEGEYGYSDL----YLGVPVIL 279
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
G NGIEK + L +L EKE + +V ++ +
Sbjct: 280 GGNGIEKIIEL-ELLADEKEALDRSVESVRNVMKV 313
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 59.8 bits (146), Expect = 9e-11
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 26/160 (16%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
++ DV V V+GGH G +++PL +T D+L + R ++ G
Sbjct: 166 NVSVEDVTVFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGA 224
Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
E+V GSA + A + + A S LK + V+ A Y D+ Y
Sbjct: 225 EIVGLL-KTGSAFYAPAASAIQMAESY---LKDKKRVLPVAAQLSGQYGVKDM----YVG 276
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
P +G NG+E+ + + L EK +V +
Sbjct: 277 VPTVIGANGVERIIEI-DLDKDEKAQFDKSVASVAGLCEA 315
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 59.0 bits (144), Expect = 2e-10
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 28/163 (17%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
+ P V+ +IG H G T +P+ S A Q++ + + ++A
Sbjct: 165 DVAPRSVDAQIIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAY 223
Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYFS 200
++++AK G+ +A AR ++ + E V+ A ++ DV Y
Sbjct: 224 DIIQAK---GATYYGVAMGLARITEAI---FRNEDAVLTVSALLEGEYEEEDV----YIG 273
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE 243
P + +NGI + + L+D E+ + LK +A+ EE
Sbjct: 274 VPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAEAEE 315
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 59.0 bits (144), Expect = 2e-10
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT-----------PSVSFPDDQLKALTGRIQEAG 145
+ P +V+ +IG H G T +P+ SQA L+ + +++A
Sbjct: 165 SVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAA 223
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYF 199
++++ K G+ +A AR ++ L E+ ++ AY+ DV Y
Sbjct: 224 YQIIEKK---GATYYGIAMGLARVTRAI---LHNENAILTVSAYLDGLYGERDV----YI 273
Query: 200 STPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241
P + +NGI + + + +L+D EK + LK +A+
Sbjct: 274 GVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARA 314
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 58.7 bits (143), Expect = 3e-10
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT-----------PSVSFPDDQLKALTGRIQEAG 145
++ V+ ++G H G T P+ S A +D+L + +++A
Sbjct: 167 NVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAA 225
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYF 199
E++K K G+ +A A AR + ++ L E+ V+ Y+ +D+ Y
Sbjct: 226 YEIIKLK---GATFYGIATALARISKAI---LNDENAVLPLSVYMDGQYGLNDI----YI 275
Query: 200 STPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
TP + +NGI+ L + L+D E+E ++ + +LKK +
Sbjct: 276 GTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTD 315
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 58.7 bits (143), Expect = 3e-10
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 31/163 (19%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT------------PSVSFPDDQLKALTGRIQEA 144
G++P + V+G H G + +P+ S +Q K + ++ ++
Sbjct: 178 GVHPLSCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDS 236
Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------Y-VKSDVTEAS 197
EV+K K G + ++ + A A S+ +K V + Y +K DV
Sbjct: 237 AYEVIKLK---GYTSWAIGLSVADLAESI---MKNLRRVHPISTMIKGLYGIKEDV---- 286
Query: 198 YFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
+ S P LG+NGI + + L+ E+ +K + L +
Sbjct: 287 FLSVPCILGQNGISDVVKV-TLTPDEEARLKKSADTLWGIQKE 328
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 58.3 bits (142), Expect = 3e-10
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 31/163 (19%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT-------------PSVSFPDDQLKALTGRIQE 143
G+N +V+ + G H G + +PL AT D+ + + ++
Sbjct: 166 GVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKN 224
Query: 144 AGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEAS 197
A +++ K G+ ++ +G ++ L + ++ + +K SD+
Sbjct: 225 AAYKIINGK---GATNYAIGMSGVDIIEAV---LHDTNRILPVSSMLKDFHGISDI---- 274
Query: 198 YFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
S P L + G+ + +SD E +K + LK+ A+
Sbjct: 275 CMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 316
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 58.3 bits (142), Expect = 3e-10
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT-----------PSVSFPDDQLKALTGRIQEAG 145
G +P V+V VIG H G + +P+ S A L+ + + A
Sbjct: 158 GFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAA 216
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYF 199
E+++ K G+ ++A A A S+ E V+ Y++ D+
Sbjct: 217 YEIIERK---GATHYAIALAVADIVESI---FFDEKRVLTLSVYLEDYLGVKDL----CI 266
Query: 200 STPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
S PV LGK+G+E+ L L L++ E E + + LK I +
Sbjct: 267 SVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINE 306
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 57.5 bits (140), Expect = 5e-10
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 30/162 (18%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT------------PSVSFPDDQLKALTGRIQEA 144
+ P V+ V+G H G + + + S A + + + ++ A
Sbjct: 158 RVAPQSVHAYVLGEH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRA 216
Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASY 198
+++ K G+ + AR ++ L E V A+ +V
Sbjct: 217 AYRIIEGK---GATYYGIGAGLARLVRAI---LTDEKGVYTVSAFTPEVAGVLEV----S 266
Query: 199 FSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
S P LG G+ + LS E+ ++ + LK+
Sbjct: 267 LSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEAAFA 307
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 57.5 bits (140), Expect = 5e-10
Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 29/164 (17%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT-----------PSVSFPDDQLKALTGRIQEAG 145
G P +V +IG H G T +P+ S A + ++ ++L + ++ A
Sbjct: 164 GAAPQNVCAHIIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAA 222
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYF 199
+++ K G+ +A + AR ++ L E++++ Y+ DV Y
Sbjct: 223 YHIIEKK---GATYYGVAMSLARITKAI---LHNENSILTVSTYLDGQYGADDV----YI 272
Query: 200 STPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE 243
P + + GI L L++ EKE + LK +
Sbjct: 273 GVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVLKNILKPHFA 315
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 57.0 bits (138), Expect = 8e-10
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 17/161 (10%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFPDDQ---LKALTGRIQEAGTEVV 149
G + + + G+ T+ A +D + + G ++
Sbjct: 175 GKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAII 234
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD----VTEASYFSTPVHL 205
A+ G SA S A A + G G+ + SD + E F PV
Sbjct: 235 DAR-GVSSA-ASAANAAIDHIHDWVLGTAGK--WTTMG-IPSDGSYGIPEGVIFGFPVTT 289
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 246
+ GL + F +E + + EL + + +
Sbjct: 290 ENGEYKIVQGL-SIDAFSQERINVTLNELLEEQNGVQHLLG 329
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 56.3 bits (137), Expect = 1e-09
Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 30/162 (18%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT------------PSVSFPDDQLKALTGRIQEA 144
G++ +V+ +IG H G + +PL S P +F ++ K + ++ A
Sbjct: 165 GVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTA 223
Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASY 198
G ++K K G+ +A + +L LK ++ + + DV
Sbjct: 224 GATIIKNK---GATYYGIAVSINTIVETL---LKNQNTIRTVGTVINGMYGIEDV----A 273
Query: 199 FSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
S P + G+++ L L+ E+E ++ + ++KK + +
Sbjct: 274 ISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 314
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 56.3 bits (136), Expect = 1e-09
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 21/168 (12%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT--------PSVSFPDDQ---LKALTGRIQEAG 145
G+ DV +I G+ T P ++ A D +Q+ G
Sbjct: 171 GVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRG 230
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD-----VTEASYFS 200
V+KA+ SA +S A A + G + SD V + +S
Sbjct: 231 AAVIKAR-KLSSA-MSAAKAICDHVRDIWFGTP--EGEFVSMGIISDGNSYGVPDDLLYS 286
Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS 248
PV + + GL ++DF +E + EL + EF++ +
Sbjct: 287 FPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLSSA 333
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 54.8 bits (133), Expect = 4e-09
Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 22/161 (13%)
Query: 92 ADQLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFPDD---QLKALTGRIQEA 144
+ L+P V+ +G H G + S P V+ D L A+ ++
Sbjct: 160 GEAF-DLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKG 217
Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA--YVKSDVTEASYFSTP 202
G V+ K G + +A + R A ++ + + + + Y S P
Sbjct: 218 GFTVLNGK---GYTSYGVATSAIRIAKAV---MADAHAELVVSNRRDDMGM----YLSYP 267
Query: 203 VHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE 243
+G++G+ L L+ E+E + + +++ + +
Sbjct: 268 AIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVD 307
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 54.4 bits (132), Expect = 6e-09
Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 26/158 (16%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT------------PSVSFPDDQLKALTGRIQEA 144
G++ T + V+G H G + + S A ++ + + + + A
Sbjct: 156 GVDGTHAHGYVLGEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNA 214
Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVKS-DVTEASYFSTP 202
+++ K + + A AR ++ L+ V+ A V S P
Sbjct: 215 AASIIEGK---RATYYGIGAALARITEAV---LRDRRAVLTVSAPTPEYGV----SLSLP 264
Query: 203 VHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
+G+ G+ L KL+ E++ ++ + L+ +
Sbjct: 265 RVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFKQQ 301
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 52.5 bits (126), Expect = 3e-08
Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 16/152 (10%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFPDDQ---LKALTGRIQEAGTEVV 149
G+ V+ I G+ T +P A P + T +Q+ G ++
Sbjct: 200 GVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALI 259
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD-----VTEASYFSTPVH 204
+ G SA S A + A SL+ E + V + + E FS P
Sbjct: 260 QKW-GRSSA-ASTAVSIADAIKSLVTP-TPEGDWFSTG-VYTTGNPYGIAEDIVFSMPCR 315
Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
+G + DF E +K + EL
Sbjct: 316 SKGDGDYELATDVSNDDFLWERIKKSEAELLA 347
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 51.4 bits (124), Expect = 5e-08
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 26/152 (17%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAG 156
+ V VIG G + S ++ E+++ K G
Sbjct: 167 KAQTSGKEVWVIGEQ-GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK---G 216
Query: 157 SATLSMAYAGARFAFSLIQGLKGESNVIECA------Y-VKSDVTEASYFSTPVHLGKNG 209
+ S+ + A S+ + + V + Y + S+V + S P LG NG
Sbjct: 217 QRSWSVGLSVADMVDSI---VNNKKKVHSVSALAKGYYDINSEV----FLSLPCILGTNG 269
Query: 210 IEKNLGLGKLSDFE-KELVKAAVPELKKNIAK 240
+ + + L + E ++++ + +
Sbjct: 270 VSEVIKT-TLKEDTVTEKLQSSASSIHSLQQQ 300
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 51.0 bits (123), Expect = 7e-08
Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 24/150 (16%)
Query: 98 LNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGS 157
+IG H G ++ S A + +A+ ++ EV+K K G+
Sbjct: 159 GARNIRRAWIIGEH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKRK---GA 211
Query: 158 ATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHLGKNGIE 211
A A R ++ ++ +I + Y +V P LGKNG E
Sbjct: 212 TIFGPAVAIYRMVKAV---VEDTGEIIPTSMILQGEYGIENV----AVGVPAKLGKNGAE 264
Query: 212 K-NLGLGKLSDFEKELVKAAVPELKKNIAK 240
++ KLSD E E ++ + L++ + +
Sbjct: 265 VADI---KLSDEEIEKLRNSAKILRERLEE 291
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 48.5 bits (116), Expect = 6e-07
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 97 GLNPTDV-NVPVIGGHAGITIIPLISQAT----PSVSFPDDQ--LKALTGRIQEAGTEVV 149
G + + V G H T+ P + A P++ D + K + + G ++
Sbjct: 172 GTGVDRIRRMTVWGNH-SSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAII 230
Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD----VTEASYFSTPVHL 205
+A+ GA SA S A A G E + + A V S + E +S PV
Sbjct: 231 QAR-GASSA-ASAANAAIEHIRDWALG-TPEGDWVSMA-VPSQGEYGIPEGIVYSFPV-T 285
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
K+G + + ++++F ++ ++ EL
Sbjct: 286 AKDGAYRVVEGLEINEFARKRMEITAQELLD 316
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 43.1 bits (102), Expect = 4e-05
Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 14/153 (9%)
Query: 97 GLNPTDVNVPVIGGHAGITIIPLISQATPS-----VSFPDDQLKALTGRIQEAGTEVVKA 151
G++ V VIG H G ++ + S + V ++ L G A VV
Sbjct: 180 GVHSCLVIGWVIGQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSN 238
Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVKS--DVTEASYFSTPVHLGKN 208
+ + A A ++ +K V VK + + + S P L N
Sbjct: 239 PVDVLTYVAWKGCSVADLAQTI---MKDLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN-N 294
Query: 209 GIEKNLGLG-KLSDFEKELVKAAVPELKKNIAK 240
GI + KL E++ ++ + L
Sbjct: 295 GISHCNIVKMKLKPDEEQQLQKSATTLWDIQKD 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 35/214 (16%), Positives = 58/214 (27%), Gaps = 71/214 (33%)
Query: 5 ASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHL-S 63
A +P S L + NA+++ GG G + L
Sbjct: 129 ARIMAKRPFDKK-SNSALFRAVG---EGNAQLVAI--FGGQGNTDDYF-------EELRD 175
Query: 64 LYDIVHTPGVAADLSHIESKAHVQAF--NGADQLKGLNPTDVNVPVIGGHAGITIIPLIS 121
LY V A+ L L T ++ + G+ I+ +
Sbjct: 176 LYQT--------------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNILEWLE 220
Query: 122 QA--TPS--------VSFP------------------------DDQLKALTGRIQEAGTE 147
TP +S P LK TG Q
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ----G 276
Query: 148 VVKAKAGAGSATLSMAYAGARFAFSLI--QGLKG 179
+V A A A + + + R A +++ G++
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Score = 40.4 bits (94), Expect = 4e-04
Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 86/216 (39%)
Query: 7 GGIGQP---LS---LLLKQ-----------SPLVDHLSLYDINNAKVMV-AG-------- 40
G P LS L +Q P + + +N AK +V +G
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 41 --------ASGGIGQ---PLSLLLKQSPLVDHLSL-----YDIVHTP--GVAADLSHIES 82
A G+ Q P S ++ + L + H+ A+DL + +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFS---ERKLKFSNRFLPVASPF---HSHLLVPASDLINKDL 443
Query: 83 KAHVQAFNGADQLKGLNPTDVNVPVIGGHAG---------IT--IIPLI----------- 120
+ +FN D ++ +PV G I+ I+ I
Sbjct: 444 VKNNVSFNAKD-IQ--------IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 121 -SQATPSVSF-PDD--QLKALTGRIQEA-GTEVVKA 151
+AT + F P L LT R ++ G V+ A
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 38.9 bits (90), Expect = 0.001
Identities = 35/217 (16%), Positives = 65/217 (29%), Gaps = 70/217 (32%)
Query: 34 AKVMVAGASGGIGQPLSLL----LKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAF 89
++ G P +L L Q + D+++ + H P + +
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPA--------GKQVEISLV 371
Query: 90 NGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVV 149
NGA L V+ G P L L +++
Sbjct: 372 NGAKNL-----------VVSGP------------------PQS-LYGLNLTLRK-----A 396
Query: 150 KAKAGAGSA---------TLSMAY--AGARFAFSLIQGLKGESNVIECAYVKSDVT-EAS 197
KA +G + S + + F S + L S++I VK++V+ A
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPF-HSHL--LVPASDLINKDLVKNNVSFNAK 453
Query: 198 YFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPEL 234
PV+ +G + L + + V +
Sbjct: 454 DIQIPVYDTFDG--SD-----LRVLSGSISERIVDCI 483
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 9e-04
Identities = 42/246 (17%), Positives = 75/246 (30%), Gaps = 55/246 (22%)
Query: 11 QPLSLLLKQS--PLVDHLSLY--DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD 66
Q L + + DH S I++ + L LLK P + L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-----------AELRRLLKSKPYENCL---- 247
Query: 67 IVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPT-DVNVPVIGGHAGITIIPLISQATP 125
+V L ++++ AFN K L T V A T I L
Sbjct: 248 LV--------LLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDH---H 294
Query: 126 SVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGA-------RFAFSLIQGLK 178
S++ D++K+L + + + + + + ++ +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 179 GESNVIECAY--VKSDVTEASY-----FSTPVHLGKNGIEKNLGLGKL-SDFEKELVKAA 230
+ +IE + ++ + F H I L L + D K V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTIL-LSLIWFDVIKSDVMVV 407
Query: 231 VPELKK 236
V +L K
Sbjct: 408 VNKLHK 413
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 32.0 bits (73), Expect = 0.18
Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 31 INNAKVMVAGASGGIGQPLSL-LLKQSP----LVDH--LSLYDIV 68
++ ++ +V G +G IGQ ++ + K++P +VD ++ ++V
Sbjct: 33 VSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNMVELV 77
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome
biogenesis, metal BIN protein; NMR {Pyrococcus
horikoshii}
Length = 165
Score = 28.4 bits (63), Expect = 1.6
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 66 DIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQAT- 124
+ TP V ++ ESK +++ A ++K P+ I I +++ T
Sbjct: 27 EGYTTPSVVEEIKDRESKIFLESLISAGKVKIAEPS---------KESIDRIIQVAKETG 77
Query: 125 --PSVSFPDDQLKALT 138
+S D ++ AL
Sbjct: 78 EVNELSKADIEVLALA 93
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 28.0 bits (63), Expect = 3.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV 68
N K+++ GA G IG L+ L++ +++ DI
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIR 37
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 28.0 bits (63), Expect = 3.3
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 60 DHLSLYDIVHTPGVAADLSHI---ESKAHVQAFNGADQLKGLNPTDVNV 105
++ LYDI + HI E+ A N G + DV+V
Sbjct: 332 QYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHV 380
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 27.6 bits (62), Expect = 3.5
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPG------------VAADLSHIES 82
+M+ GA+G +G ++ + + V D + ES
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHIG---VRNVEKVPDDWRGKVSVRQLDYFNQES 58
Query: 83 KAHVQAFNGADQL 95
V+AF G D +
Sbjct: 59 --MVEAFKGMDTV 69
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44,
X-RAY, PSI, protein structure initiative; 2.50A
{Bacillus subtilis}
Length = 187
Score = 27.5 bits (62), Expect = 3.6
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 25 HLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLS 78
+ + G+ +P+ ++++ V+ + D++ PGV D++
Sbjct: 81 KMQFRTYQTDDQLETVY-AGLLEPV---IEKTKEVNPSQI-DLMIVPGVCFDVN 129
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGAD 93
V + G+ G +G+ L+ L+ H + +V +GAD
Sbjct: 149 TVAITGSRGLVGRALTAQLQTG---GH-EVIQLVRKEPKPGKRFWDPLNPASDLLDGAD 203
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 27.4 bits (60), Expect = 4.7
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 2 VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDH 61
+ G +G IG + L + L L D V G + + + +P +++
Sbjct: 6 IVGVTGIIG---------NSLAEILPLADTPGGPWKVYGVA---RRTRPAWHEDNP-INY 52
Query: 62 LSLYDIVHTPGVAADLSHIESKAHV 86
+ DI A LS + HV
Sbjct: 53 VQC-DISDPDDSQAKLSPLTDVTHV 76
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 27.2 bits (61), Expect = 5.0
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 18/73 (24%)
Query: 36 VMVAGASGGIGQPL-SLLLKQSPLVDHLSLYDIVHTPG------------VAADLSHIES 82
+ V GA+G +G + LLK+ P +++ V D + ES
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAI---VRNVEKASTLADQGVEVRHGDYNQPES 59
Query: 83 KAHVQAFNGADQL 95
+AF G +L
Sbjct: 60 --LQKAFAGVSKL 70
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 26.9 bits (59), Expect = 5.0
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 35 KVMVAGASGGIGQPL-SLLLKQS 56
+ + GA+G I Q L + LL +
Sbjct: 7 YITILGAAGQIAQXLTATLLTYT 29
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 5.5
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 18 KQS--PLVDHLSLYDINNAKVMVAGAS 42
KQ+ L L LY ++A + A+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 27.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD---IVHTP 71
IN A+ +AG GI L L S V L+L D I
Sbjct: 118 INKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVA 161
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 26.7 bits (59), Expect = 6.1
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 35 KVMVAGASGGIGQPLSLLLKQSP------LVDHLSLYDIVHTPG---VAADLSHIESKAH 85
V++ GA G I + + L + + + D+ + +
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALK- 83
Query: 86 VQAFNGAD 93
QA G D
Sbjct: 84 -QAMQGQD 90
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery
vehicle, blood substitute, oxygen storage/transport
complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2
a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A*
1o1l_A* 1o1n_A* 1o1m_A*
Length = 283
Score = 26.8 bits (58), Expect = 6.3
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 219 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 247
LS +K VKAA ++ + + G E + +
Sbjct: 2 LSPADKTNVKAAWGKVGAHAGEYGAEALER 31
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant
tortoise, geochelone gigantea, oxygen storage/transport
complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP:
a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Length = 141
Score = 26.2 bits (57), Expect = 7.2
Identities = 5/30 (16%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 219 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 247
L++ +K+L++ ++ ++ G E + +
Sbjct: 2 LTEDDKQLIQHVWEKVLEHQEDFGAEALER 31
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation,
phosphoprotein, packing defects, disease mutation,
distal site point mutation; HET: HEM SO4; 1.07A {Homo
sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A*
1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A*
3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A*
1b86_A* ...
Length = 141
Score = 26.2 bits (57), Expect = 8.3
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 219 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 247
LS +K VKAA ++ + + G E +
Sbjct: 2 LSPADKTNVKAAWGKVGAHAGEYGAEAYER 31
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation,
structural genomics, protein structure initiative, PSI,
CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2
PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Length = 143
Score = 25.9 bits (56), Expect = 8.5
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 219 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 247
LS +K+ VKA ++ + G + +++
Sbjct: 3 LSSKDKDTVKALWGKIADKAEEIGSDALSR 32
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport
complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Length = 142
Score = 25.8 bits (56), Expect = 8.8
Identities = 4/30 (13%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 219 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 247
L+ E+ ++ + ++ G E + +
Sbjct: 3 LTKTERTIIVSMWAKISTQADTIGTETLER 32
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 26.5 bits (58), Expect = 9.0
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 24/104 (23%)
Query: 35 KVMVAGASGGIGQPL------------SLLLKQSPLVDHLSLYDIVHTPGV---AADLSH 79
+V++AGA+G IGQ + L ++ + G ++
Sbjct: 12 RVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE 71
Query: 80 IESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQA 123
E+ + + D+ V +GG + + I L+
Sbjct: 72 QEA--MEKILKEHE-------IDIVVSTVGGESILDQIALVKAM 106
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 26.0 bits (58), Expect = 9.3
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 25 HLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAAD 76
+S I+N + + +P+ + V+ + D+ PGVA
Sbjct: 92 TMSFRQISNFDQLETV-YMNLREPIP---ALTEEVNADEI-DLQIVPGVAYT 138
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron,
metal-binding, oxygen transport, transport, oxygen
binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A*
3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A*
3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Length = 141
Score = 25.9 bits (56), Expect = 9.4
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 219 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 247
LS +K VKA ++ G E + +
Sbjct: 2 LSANDKSNVKAVFAKIGGQAGDLGGEALER 31
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET:
HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Length = 150
Score = 26.0 bits (57), Expect = 9.8
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 219 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 247
S+ K ++ + L +I G ++
Sbjct: 11 GSEAIKANLRRSWGVLSADIEATGLMLMSN 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.367
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,685,029
Number of extensions: 225651
Number of successful extensions: 974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 109
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)