BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14622
(788 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 292 bits (747), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 171/386 (44%), Positives = 228/386 (59%), Gaps = 51/386 (13%)
Query: 400 EYYIQTYIYLCL-KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVE 458
E +I I + +VG EGVITV++ K + E+EV+EGM+FDRGY+SPYF+ A E
Sbjct: 155 ESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAE 214
Query: 459 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVA 518
+DA +LL P LE +KPL+I+AEDV+GEAL+TLVVN+L+ GL++A
Sbjct: 215 LEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIA 274
Query: 519 AVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLIL 578
AVKAPGFGD RKA LQD+A+ TGG V ++ +KLE++ LG ++ I KD+T I+
Sbjct: 275 AVKAPGFGDRRKAMLQDIAILTGGQVISEDLG-MKLENVTIDMLGRAKKVSINKDNTTIV 333
Query: 579 KGKGKKEXXXXXXXXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKK 638
G G+K E TTSDY+REKLQER+A+LA GVAV++VGG +E+EV E+K
Sbjct: 334 DGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERK 393
Query: 639 DRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXX 698
DRV DALNATRAAV+EGIV GGG AL++ VL+ L AN+DQ G
Sbjct: 394 DRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAG-------------- 439
Query: 699 XXEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVV 758
+ I+++AL P IA NAGVD +VV
Sbjct: 440 ----------------------------------IAIIRRALEAPMRQIAENAGVDGAVV 465
Query: 759 VNKVLESSGE-MGYDAMNNEYVNMIQ 783
KV ESS + G++A EY +M +
Sbjct: 466 AGKVRESSDKAFGFNAQTEEYGDMFK 491
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 158/271 (58%), Gaps = 50/271 (18%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV++++S+G+P+ITKDGV+VAK IEL DKF+N+GA++V++VA+ TN+EAGDGTTTATV
Sbjct: 35 GRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ G NP++++RG+ +A + +K ++PV E+AQV TISANG
Sbjct: 95 LAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANG 154
Query: 140 DKAVGELISDAMKRVSAK----------------------------------------VE 159
+ +G+ I++AM+RV + E
Sbjct: 155 ESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAE 214
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLRSQ 219
+DA +LL P LE +KPL+I+AEDV+GEAL+TLV+ +
Sbjct: 215 LEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNK-------- 266
Query: 220 NLTPLLRRAYAKDVRFGPEVRGLMLQGVDIL 250
L L+ A K FG + R MLQ + IL
Sbjct: 267 -LRGGLKIAAVKAPGFG-DRRKAMLQDIAIL 295
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFIIELKLVLEYYIQTYIYLCLK 412
+VG EGVITV++ K + E+EV+EGM+FDRGY+SPYF+ ++ YI L K
Sbjct: 168 RVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEK 225
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 275 EFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
E +DA +LL P LE +KPL+I+AEDV+GEAL+TLVV K
Sbjct: 214 ELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNK 266
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AK+V+F + R ML+GV+ILADA+
Sbjct: 3 AKEVKFNSDARDRMLKGVNILADAV 27
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 278 bits (712), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 166/371 (44%), Positives = 208/371 (56%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L NADQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNADQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + ML+GV++LADA+
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAV 26
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 207/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + R ML+GV++LADA+
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAV 26
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 207/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + R ML+GV++LADA+
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAV 26
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 207/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNKDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + R ML+GV++LADA+
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAV 26
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 207/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + ML+GV++LADA+
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAV 26
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 207/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + ML+GV++LADA+
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAV 26
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 207/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + ML+GV++LADA+
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAV 26
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 207/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + R ML+GV++LADA+
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAV 26
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 162/375 (43%), Positives = 217/375 (57%), Gaps = 52/375 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEG+ITV++ K+L EL+ +EG +FD+GYISPYF+ + + +DA +L+
Sbjct: 166 KVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV 225
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN+L+ L VAAVKAPGFGD RK
Sbjct: 226 SNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKE 285
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
L+D+A TGG V +E KLE+ + LG + ITKD+T I+ GKGKKE
Sbjct: 286 MLKDIAAVTGGTVISEELG-FKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARI 344
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E T S+Y REKLQERLA+LA GVAV++VG ++E E+ EKK R DALNATRAA
Sbjct: 345 NGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAA 404
Query: 652 VEEGIVPGGGTALLRCIAVLDKL-ETANADQATGKKEXXXXXXXXXXXXXEATTSDYERE 710
VEEGIVPGGG LLR I+ +++L + D+ATG K
Sbjct: 405 VEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAK------------------------ 440
Query: 711 KLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSG--E 768
IV++AL +P IA NAG + SV+V ++L +
Sbjct: 441 ------------------------IVRRALEEPARQIAENAGYEGSVIVQQILAETKNPR 476
Query: 769 MGYDAMNNEYVNMIQ 783
G++A E+V+M++
Sbjct: 477 YGFNAATGEFVDMVE 491
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 140/233 (60%), Gaps = 41/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+ +GSP ITKDGVTVAK +EL+D +NIGA+L+++VA+ TN+ AGDGTTTATV
Sbjct: 34 GRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ GANP+ ++RG+ AVE +K L+ PV + I +VATISAN
Sbjct: 94 LAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN- 152
Query: 140 DKAVGELISDAMKRV----------SAKVE------------------------------ 159
D VG+LI+DAM++V S +E
Sbjct: 153 DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAV 212
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+DA +L+ P LE KPL+I+AEDV+GEAL+TLV+ +L
Sbjct: 213 LEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKL 265
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 16/97 (16%)
Query: 297 ALELANSKRKPLVILAEDVDG-EALSTLVVGKEGVITVKDGKTLTDELEVIEAYIYLCLK 355
A+E A K K L I ED E ++T+ V GK + D +E K
Sbjct: 122 AVEAAVEKIKALAIPVEDRKAIEEVATISANDPEV-----GKLIADAME----------K 166
Query: 356 VGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
VGKEG+ITV++ K+L EL+ +EG +FD+GYISPYF+
Sbjct: 167 VGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFV 203
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 276 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+DA +L+ P LE KPL+I+AEDV+GEAL+TLVV K
Sbjct: 213 LEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNK 264
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 206/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 168 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 227
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 228 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 287
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 288 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 346
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 347 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 406
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 407 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 439
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G SVV N V G GY
Sbjct: 440 ---------------------IKVALRAMEAPLRQIVLNCGEKPSVVANTVKGGDGNYGY 478
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 479 NAATEEYGNMI 489
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 35 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 95 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANS 154
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 155 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 214
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 215 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 272
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 168 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 205
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 213 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 264
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + R ML+GV++LADA+
Sbjct: 3 AKDVKFGNDARVKMLRGVNVLADAV 27
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 276 bits (705), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 207/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV AL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L NADQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNADQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 263
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + R ML+GV++LADA+
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAV 26
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 274 bits (701), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 164/371 (44%), Positives = 206/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 168 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 227
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+T VVN ++ ++VAAVKAPGFGD RKA
Sbjct: 228 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTMRGIVKVAAVKAPGFGDRRKA 287
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 288 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 346
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 347 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 406
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 407 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 439
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 440 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 478
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 479 NAATEEYGNMI 489
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 35 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 95 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANS 154
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 155 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 214
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+T V+ + +++
Sbjct: 215 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTMRGIVK 272
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 168 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 205
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+T VV
Sbjct: 213 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVV 264
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + ML+GV++LADA+
Sbjct: 3 AKDVKFGNDAGVKMLRGVNVLADAV 27
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 164/371 (44%), Positives = 206/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+T VVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+T V+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTIRGIVK 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+T VV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVV 263
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + ML+GV++LADA+
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAV 26
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 164/371 (44%), Positives = 206/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+T VVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 478 NAATEEYGNMI 488
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+T V+ + +++
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTIRGIVK 271
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 204
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+T VV
Sbjct: 212 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVV 263
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + ML+GV++LADA+
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAV 26
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/371 (44%), Positives = 206/371 (55%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL
Sbjct: 168 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 227
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 228 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 287
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++
Sbjct: 288 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 346
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV AL+ATRAA
Sbjct: 347 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAA 406
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEG+V GGG AL+R + L L N DQ G
Sbjct: 407 VEEGVVAGGGVALIRVASKLADLRGQNEDQNVG--------------------------- 439
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 440 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 478
Query: 772 DAMNNEYVNMI 782
+A EY NMI
Sbjct: 479 NAATEEYGNMI 489
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 35 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 95 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANS 154
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ VG+LI++AM +V + VE
Sbjct: 155 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 214
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+ +LL P LE KPL+I+AEDV+GEAL+TLV+ + +++
Sbjct: 215 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 272
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFI
Sbjct: 168 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFI 205
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 213 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 264
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+FG + R ML+GV++LADA+
Sbjct: 3 AKDVKFGNDARVKMLRGVNVLADAV 27
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 233 bits (593), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 199/371 (53%), Gaps = 50/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVG EGVITV++ T +LE+ EGM+FD+GYIS YF+ + + +D +LL
Sbjct: 124 KVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKV 183
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEALSTLVVN+++ + AVKAPGFGD RKA
Sbjct: 184 STVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKA 243
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A+ TGG V +E + LE+ + LG ++V+TKD+T I++G G +
Sbjct: 244 MLQDMAILTGGQVISEEVG-LTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRV 302
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E + SDY+REKLQERLA+LA GVAV+K G ++EVE+ E+K R+ DA+ +AA
Sbjct: 303 AQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAA 362
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEGIV GGG LL+ LD+L+ D+ATG
Sbjct: 363 VEEGIVAGGGVTLLQAAPTLDELKL-EGDEATG--------------------------- 394
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
IVK AL P IA N+G++ VV KV G
Sbjct: 395 ---------------------ANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGL 433
Query: 772 DAMNNEYVNMI 782
+A Y +++
Sbjct: 434 NAQTGVYEDLL 444
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 131/230 (56%), Gaps = 41/230 (17%)
Query: 29 WGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEG 88
WG+P IT DGV++AK IEL+D ++ IGA+LV++VA T++ AGDGTTTATVLA+A+ +EG
Sbjct: 1 WGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREG 60
Query: 89 FEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELIS 148
++ GANP+ ++RG+ AVE + L + +K V T E+IA A ISA GD+++G+LI+
Sbjct: 61 LRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISA-GDQSIGDLIA 119
Query: 149 DAMKRVSAK----VE------------------------------------FQDALVLLX 168
+AM +V + VE +D +LL
Sbjct: 120 EAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLV 179
Query: 169 XXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLRS 218
P LE KPL+I+AEDV+GEALSTLV+ ++ +S
Sbjct: 180 SSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKS 229
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFIIELKLVLEYYIQTYIYLCLKVG 414
KVG EGVITV++ T +LE+ EGM+FD+GYIS YF+ + + YI L
Sbjct: 124 KVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLV---- 179
Query: 415 KEGVITVKD 423
V TVKD
Sbjct: 180 SSKVSTVKD 188
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 271 RAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
R + +D +LL P LE KPL+I+AEDV+GEALSTLVV K
Sbjct: 166 RQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNK 222
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 232 bits (592), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 199/371 (53%), Gaps = 50/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXX 471
KVG EGVITV++ T +LE+ EGM+FD+GYIS YF+ + + +D +LL
Sbjct: 166 KVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKV 225
Query: 472 XXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
P LE KPL+I+AEDV+GEALSTLVVN+++ + AVKAPGFGD RKA
Sbjct: 226 STVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKA 285
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXX 591
LQD+A+ TGG V +E + LE+ + LG ++V+TKD+T I++G G +
Sbjct: 286 MLQDMAILTGGQVISEEVG-LTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRV 344
Query: 592 XXXXXXXEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
E + SDY+REKLQERLA+LA GVAV+K G ++EVE+ E+K R+ DA+ +AA
Sbjct: 345 AQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAA 404
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEXXXXXXXXXXXXXEATTSDYEREK 711
VEEGIV GGG LL+ LD+L+ D+ATG
Sbjct: 405 VEEGIVAGGGVTLLQAAPTLDELKL-EGDEATG--------------------------- 436
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
IVK AL P IA N+G++ VV KV G
Sbjct: 437 ---------------------ANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGL 475
Query: 772 DAMNNEYVNMI 782
+A Y +++
Sbjct: 476 NAQTGVYEDLL 486
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 139/239 (58%), Gaps = 41/239 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+ WG+P IT DGV++AK IEL+D ++ IGA+LV++VA T++ AGDGTTTATV
Sbjct: 34 GRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+A+ +EG ++ GANP+ ++RG+ AVE + L + +K V T E+IA A ISA G
Sbjct: 94 LAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISA-G 152
Query: 140 DKAVGELISDAMKRVSAK----VE------------------------------------ 159
D+++G+LI++AM +V + VE
Sbjct: 153 DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAV 212
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLRS 218
+D +LL P LE KPL+I+AEDV+GEALSTLV+ ++ +S
Sbjct: 213 LEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKS 271
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFIIELKLVLEYYIQTYIYLCLKVG 414
KVG EGVITV++ T +LE+ EGM+FD+GYIS YF+ + + YI L
Sbjct: 166 KVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLV---- 221
Query: 415 KEGVITVKD 423
V TVKD
Sbjct: 222 SSKVSTVKD 230
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 271 RAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
R + +D +LL P LE KPL+I+AEDV+GEALSTLVV K
Sbjct: 208 RQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNK 264
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues
188-379
Length = 192
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 121/193 (62%), Gaps = 1/193 (0%)
Query: 432 EVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPL 491
+V+EGM+FDRGY+SPYFIN + VE + +LL P LE KPL
Sbjct: 1 DVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPL 60
Query: 492 VILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASP 551
+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V +E
Sbjct: 61 LIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG- 119
Query: 552 VKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXXXXXXXXXEATTSDYEREKLQ 611
++LE DLG +VI KD T I+ G G++ E TSDY+REKLQ
Sbjct: 120 MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 179
Query: 612 ERLARLASGVAVL 624
ER+A+LA GVAV+
Sbjct: 180 ERVAKLAGGVAVI 192
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 26 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 77
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 701 EATTSDYEREKLQERLARLASGVAVL 726
E TSDY+REKLQER+A+LA GVAV+
Sbjct: 167 EEATSDYDREKLQERVAKLAGGVAVI 192
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 375 EVIEGMKFDRGYISPYFI 392
+V+EGM+FDRGY+SPYFI
Sbjct: 1 DVVEGMQFDRGYLSPYFI 18
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 155 SAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVM 209
+ VE + +LL P LE KPL+I+AEDV+GEAL+TLV+
Sbjct: 23 TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 77
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 117/187 (62%), Gaps = 1/187 (0%)
Query: 435 EGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVIL 494
EGM+FDRGY+SPYFIN + +VE + +LL P LE KPL+I+
Sbjct: 8 EGMQFDRGYLSPYFINKPETGEVELESPFILLTDKKISNIRELLPVLEAVAKAGKPLLII 67
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V +E +KL
Sbjct: 68 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELG-MKL 126
Query: 555 EDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXXXXXXXXXEATTSDYEREKLQERL 614
E DLG +VITKD T I+ G G++ E TSDY+REKLQER+
Sbjct: 127 EKATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERV 186
Query: 615 ARLASGV 621
A+LA GV
Sbjct: 187 AKLAGGV 193
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 272 AKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
+VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 28 GEVELESPFILLTDKKISNIRELLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 81
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 155 SAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVM 209
+ +VE + +LL P LE KPL+I+AEDV+GEAL+TLV+
Sbjct: 27 TGEVELESPFILLTDKKISNIRELLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 81
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 701 EATTSDYEREKLQERLARLASGV 723
E TSDY+REKLQER+A+LA GV
Sbjct: 171 EEATSDYDREKLQERVAKLAGGV 193
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 378 EGMKFDRGYISPYFI 392
EGM+FDRGY+SPYFI
Sbjct: 8 EGMQFDRGYLSPYFI 22
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 117/187 (62%), Gaps = 1/187 (0%)
Query: 435 EGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVIL 494
EGM+FDRGY+SPYFIN + +VE + +LL P LE KPL+I+
Sbjct: 8 EGMQFDRGYLSPYFINKPETGEVELESPFILLVDKKISNIRELLPVLEAVAKAGKPLLII 67
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V +E +KL
Sbjct: 68 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELG-MKL 126
Query: 555 EDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXXXXXXXXXEATTSDYEREKLQERL 614
E DLG +VITKD T I+ G G++ E TSDY+REKLQER+
Sbjct: 127 EKATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERV 186
Query: 615 ARLASGV 621
A+LA GV
Sbjct: 187 AKLAGGV 193
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 272 AKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
+VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 28 GEVELESPFILLVDKKISNIRELLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 81
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 155 SAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVM 209
+ +VE + +LL P LE KPL+I+AEDV+GEAL+TLV+
Sbjct: 27 TGEVELESPFILLVDKKISNIRELLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 81
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 701 EATTSDYEREKLQERLARLASGV 723
E TSDY+REKLQER+A+LA GV
Sbjct: 171 EEATSDYDREKLQERVAKLAGGV 193
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 378 EGMKFDRGYISPYFI 392
EGM+FDRGY+SPYFI
Sbjct: 8 EGMQFDRGYLSPYFI 22
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising
Residues 191-376, Mutant With Ala 262 Replaced With Leu
And Ile 267 Replaced With Met
Length = 203
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 115/187 (61%), Gaps = 1/187 (0%)
Query: 435 EGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVIL 494
EGM+FDRGY+SPYFIN + VE + +LL P LE KPL+I+
Sbjct: 18 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 77
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V +E ++L
Sbjct: 78 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG-MEL 136
Query: 555 EDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXXXXXXXXXEATTSDYEREKLQERL 614
E DLG +VI KD T I+ G G++ E TSDY+REKLQER+
Sbjct: 137 EKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERV 196
Query: 615 ARLASGV 621
A+LA GV
Sbjct: 197 AKLAGGV 203
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 40 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 91
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 155 SAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVM 209
+ VE + +LL P LE KPL+I+AEDV+GEAL+TLV+
Sbjct: 37 TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 91
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 701 EATTSDYEREKLQERLARLASGV 723
E TSDY+REKLQER+A+LA GV
Sbjct: 181 EEATSDYDREKLQERVAKLAGGV 203
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 378 EGMKFDRGYISPYFI 392
EGM+FDRGY+SPYFI
Sbjct: 18 EGMQFDRGYLSPYFI 32
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel
From Xenorhapdus Nematophila
Length = 201
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 116/187 (62%), Gaps = 1/187 (0%)
Query: 435 EGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVIL 494
EGM+FDRGY+SPYFIN + VE ++ +LL P LE KPLVI+
Sbjct: 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVII 72
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
AEDV+GEAL+TLVVN ++ ++VA+VKAPGFGD RKA LQD+A T G V +E ++L
Sbjct: 73 AEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIG-LEL 131
Query: 555 EDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXXXXXXXXXEATTSDYEREKLQERL 614
E DLG +VI KD T I+ G G++ E +TSDY+REKLQER+
Sbjct: 132 EKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYDREKLQERV 191
Query: 615 ARLASGV 621
A+LA GV
Sbjct: 192 AKLAGGV 198
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 155 SAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPR 214
S VE ++ +LL P LE KPLVI+AEDV+GEAL+TLV+
Sbjct: 32 SGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVV----- 86
Query: 215 VLRSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADA 253
N+ +++ A K FG + R MLQ + L +
Sbjct: 87 ----NNMRGIVKVASVKAPGFG-DRRKAMLQDIATLTNG 120
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVGK-EGVIT 332
VE ++ +LL P LE KPLVI+AEDV+GEAL+TLVV G++
Sbjct: 35 VELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRGIVK 94
Query: 333 V 333
V
Sbjct: 95 V 95
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 701 EATTSDYEREKLQERLARLASGV 723
E +TSDY+REKLQER+A+LA GV
Sbjct: 176 EESTSDYDREKLQERVAKLAGGV 198
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 378 EGMKFDRGYISPYFI 392
EGM+FDRGY+SPYFI
Sbjct: 13 EGMQFDRGYLSPYFI 27
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1
Apical Domain
Length = 194
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 117/195 (60%), Gaps = 1/195 (0%)
Query: 430 ELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRK 489
ELE EG+ FD+G++S YF+ + +DAL+LL P LE K
Sbjct: 1 ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGK 60
Query: 490 PLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEA 549
PL+I+AEDV+GEAL+TLVVN ++ L+ AVK P FGD RKA L+DLAV TGG V +A
Sbjct: 61 PLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDA 120
Query: 550 SPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEXXXXXXXXXXXXXEATTSDYEREK 609
V L ++ LGS +V++KDDT+I+ G G E + + SD++REK
Sbjct: 121 GMV-LREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREK 179
Query: 610 LQERLARLASGVAVL 624
L ERLA+LA GVAV+
Sbjct: 180 LGERLAKLAGGVAVI 194
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLRSQ 219
+DAL+LL P LE KPL+I+AEDV+GEAL+TLV+ + + L++
Sbjct: 30 LEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLKAV 89
Query: 220 NLT-PLL---RRAYAKDV 233
+ P R+A+ +D+
Sbjct: 90 AVKGPYFGDRRKAFLEDL 107
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 276 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
+DAL+LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 30 LEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVV 79
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 373 ELEVIEGMKFDRGYISPYFIIEL 395
ELE EG+ FD+G++S YF+ +
Sbjct: 1 ELEFTEGIGFDKGFLSAYFVTDF 23
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345
Length = 155
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 435 EGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVIL 494
EGM+FDRGY+SPYFIN + VE + +LL P LE KPL+I+
Sbjct: 1 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 60
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V +E ++L
Sbjct: 61 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG-MEL 119
Query: 555 EDLQATDLGSVGEIVITKDDTLILKGKGKK 584
E DLG +VI KD T I+ G G++
Sbjct: 120 EKATLEDLGQAKRVVINKDTTTIIDGVGEE 149
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 23 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 74
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 155 SAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRLPR 214
+ VE + +LL P LE KPL+I+AEDV+GEAL+TLV+ +
Sbjct: 20 TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRG 79
Query: 215 VLR 217
+++
Sbjct: 80 IVK 82
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 378 EGMKFDRGYISPYFI 392
EGM+FDRGY+SPYFI
Sbjct: 1 EGMQFDRGYLSPYFI 15
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DK7|B Chain B, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DKD|A Chain A, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|B Chain B, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|C Chain C, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|D Chain D, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
Length = 146
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 435 EGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVIL 494
EGM+FDRGY+SPYFIN + VE + +LL P LE KPL+I+
Sbjct: 1 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 60
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V +E ++L
Sbjct: 61 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG-MEL 119
Query: 555 EDLQATDLGSVGEIVITKDDTLILKG 580
E DLG +VI KD T I+ G
Sbjct: 120 EKATLEDLGQAKRVVINKDTTTIIDG 145
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 274 VEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVV 325
VE + +LL P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 23 VELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 74
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 155 SAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVM 209
+ VE + +LL P LE KPL+I+AEDV+GEAL+TLV+
Sbjct: 20 TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVV 74
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 378 EGMKFDRGYISPYFI 392
EGM+FDRGY+SPYFI
Sbjct: 1 EGMQFDRGYLSPYFI 15
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical
Domain) Comprising Residues 192-336
Length = 145
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 436 GMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILA 495
G +FD+GYISPYF+ + + +DA +L+ P LE KPL+I+A
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 496 EDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 555
EDV+GEAL+TLVVN+L+ L VAAVKAPGFGD RK L+D+A TGG V +E KLE
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELG-FKLE 119
Query: 556 DLQATDLGSVGEIVITKDDTLILKGK 581
+ + LG + ITKD+T I+ GK
Sbjct: 120 NATLSMLGRAERVRITKDETTIVGGK 145
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 276 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+DA +L+ P LE KPL+I+AEDV+GEAL+TLVV K
Sbjct: 24 LEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNK 75
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 160 FQDALVLLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+DA +L+ P LE KPL+I+AEDV+GEAL+TLV+ +L
Sbjct: 24 LEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKL 76
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 379 GMKFDRGYISPYFI 392
G +FD+GYISPYF+
Sbjct: 1 GYQFDKGYISPYFV 14
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G +T DG T+ I+L Q+ AK++ +VA ++EAGDGTTTA V
Sbjct: 47 GMDKMLVDSLGDIVVTNDGATILDKIDL----QHPAAKMMVEVAKTQDKEAGDGTTTAVV 102
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P I +G LA E + L E++ V +E + ++A S
Sbjct: 103 IAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSI 162
Query: 138 NGDKA------VGELISDAMKRVSAK 157
G A + +L +A+K+V+ K
Sbjct: 163 TGKNAESHKELLAKLAVEAVKQVAEK 188
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G +T D T+ I+L Q+ AK++ +VA ++EAGDGTTTA V
Sbjct: 47 GMDKMLVDSLGDIVVTNDCATILDKIDL----QHPAAKMMVEVAKTQDKEAGDGTTTAVV 102
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P I +G LA E + L E++ V +E + ++A S
Sbjct: 103 IAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSI 162
Query: 138 NGDKA------VGELISDAMKRVSAK 157
G A + +L +A+K+V+ K
Sbjct: 163 TGKNAESHKELLAKLAVEAVKQVAEK 188
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G +T D T+ I+L Q+ AK++ +VA ++EAGDGTTTA V
Sbjct: 47 GMDKMLVDSLGDIVVTNDCATILDKIDL----QHPAAKMMVEVAKTQDKEAGDGTTTAVV 102
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P I +G LA E + L E++ V +E + ++A S
Sbjct: 103 IAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSI 162
Query: 138 NGDKA------VGELISDAMKRVSAK 157
G A + +L +A+K+V+ K
Sbjct: 163 TGKNAESHKELLAKLAVEAVKQVAEK 188
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + IL G IT DG T+ +EL ++ AKL+ ++ + ++E GDGTT V
Sbjct: 69 GLDKILISPDGEITITNDGATILSQMELDNEI----AKLLVQLSKSQDDEIGDGTTGVVV 124
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT 124
LA A+ + E I KG +PI+I G A + + L+E ++
Sbjct: 125 LASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDIS 169
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L S G IT DG T+ K +++ Q+ AK++ +V+ + E GDGTTTA VL+
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDI----QHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGE 56
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQV----ATISANG 139
+ + E I KG + I G A E + L+ ++ ++ +E A + I+ G
Sbjct: 57 LLSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKG 116
Query: 140 DKAVGELIS 148
+A E +S
Sbjct: 117 AEAYKEKLS 125
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G IT DGVT+ K +++ ++ AK++ +V+ + GDGTTTA +
Sbjct: 45 GMDKMLVDSLGDIVITNDGVTILKEMDV----EHPAAKMMVEVSKTQDSFVGDGTTTAVI 100
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ I++ +P I G +A E K + E+S + E+ + ++A S
Sbjct: 101 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSL 160
Query: 138 NGDKA 142
N A
Sbjct: 161 NSKSA 165
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G I+ DG T+ K +++ ++ AK++ +V+ + GDGTTTA V
Sbjct: 46 GMDKMLVDSIGDIIISNDGATILKEMDV----EHPTAKMIVEVSKAQDTAVGDGTTTAVV 101
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
L+ + K+ + +G +P I G LAV + + E+++ T + ++A + +G
Sbjct: 102 LSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSG 161
Query: 140 DKAVG---ELISD-AMKRVSAKVEFQD 162
K G + ++D +K V+A E +D
Sbjct: 162 -KNTGLSNDFLADLVVKAVNAVAEVRD 187
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G +T DG T+ +++ + AKL+ +++ + ++E GDGTT VLA A+ +E
Sbjct: 44 GDVTVTNDGATILSMMDVDHQI----AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAE 99
Query: 90 EKISKGANPIEIRRGVMLAVETIKTHLKELSKPV 123
+ + +G +PI I G A HL ++S V
Sbjct: 100 QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSV 133
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G IT DG T+ ++L Q+ AKL+ +A +EE DGT TA +
Sbjct: 54 GMDKMLVDSLGDITITNDGATILDKMDL----QHPAAKLLVQIAKGQDEETADGTKTAVI 109
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT 124
+ + K+ + + K +P I G A E ++EL++ V+
Sbjct: 110 FSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVS 154
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V
Sbjct: 37 GMDKMLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVV 92
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P + +G A + + LK ++ V ++ + ++A S
Sbjct: 93 VAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSI 152
Query: 138 NGDKA 142
G A
Sbjct: 153 TGKGA 157
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V
Sbjct: 37 GMDKMLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVV 92
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P + +G A + + LK ++ V ++ + ++A S
Sbjct: 93 VAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSI 152
Query: 138 NGDKA 142
G A
Sbjct: 153 TGKGA 157
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V
Sbjct: 43 GMDKMLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVV 98
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P + +G A + + LK ++ V ++ + ++A S
Sbjct: 99 VAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSI 158
Query: 138 NGDKA 142
G A
Sbjct: 159 TGKGA 163
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V
Sbjct: 37 GMDKMLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVV 92
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P + +G A + + LK ++ V ++ + ++A S
Sbjct: 93 VAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSI 152
Query: 138 NGDKA 142
G A
Sbjct: 153 TGKGA 157
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V
Sbjct: 43 GMDKMLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVV 98
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P + +G A + + LK ++ V ++ + ++A S
Sbjct: 99 VAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSI 158
Query: 138 NGDKA 142
G A
Sbjct: 159 TGKGA 163
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V
Sbjct: 37 GMDKMLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVV 92
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P + +G A + + LK ++ V ++ + ++A S
Sbjct: 93 VAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSI 152
Query: 138 NGDKA 142
G A
Sbjct: 153 TGKGA 157
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V
Sbjct: 37 GMDKMLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVV 92
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P + +G A + + LK ++ V ++ + ++A S
Sbjct: 93 VAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSI 152
Query: 138 NGDKA 142
G A
Sbjct: 153 TGKGA 157
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V
Sbjct: 43 GMDKMLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVV 98
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE--IAQVATISA 137
+A + ++ E + + +P + +G A + + LK ++ V ++ + ++A S
Sbjct: 99 VAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSI 158
Query: 138 NGDKA 142
G A
Sbjct: 159 TGKGA 163
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G I+ DG T+ K +++ + AK + D+A + + E GDGTT+ T+LA K+
Sbjct: 45 GKATISNDGATILKLLDVV----HPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVK 100
Query: 90 EKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQ 131
+ +G +P I R A + +KE++ V +++ Q
Sbjct: 101 PYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQ 142
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +++ G IT DG T+ K +++ + A+++ +++ + EAGDGTT+ +
Sbjct: 35 GMDKMIQDGKGDVTITNDGATILKQMQV----LHPAARMLVELSKAQDIEAGDGTTSVVI 90
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPV 123
+A ++ + + KG +P I A+E L ++S+PV
Sbjct: 91 IAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPV 134
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 11 GSPKITKDDGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEA 70
G KI GR+ S +T DG T+ K I + N AK++ D++ ++E
Sbjct: 34 GMDKILLSSGRD-------ASLMVTNDGATILKNIGV----DNPAAKVLVDMSRVQDDEV 82
Query: 71 GDGTTTATVLARAIAKEGFEKISKGANPIEIRRG 104
GDGTT+ TVLA + +E I+K +P I G
Sbjct: 83 GDGTTSVTVLAAELLREAESLIAKKIHPQTIIAG 116
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G IT DG T+ K +E+ ++ AK++ ++A+ ++E GDGTT+ +
Sbjct: 34 GLDKMLVDDIGDVTITNDGATILKLLEV----EHPAAKVLCELADLQDKEVGDGTTSVVI 89
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKE 118
+A + K E + + +P + G LA + ++ E
Sbjct: 90 IAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE 128
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G ++++ S I+ DG T+ K +++ AK + D++ + E GDGTT+ T+
Sbjct: 48 GSDILIVTSNQKTTISNDGATILKLLDVVHP----AAKTLVDISRAQDAEVGDGTTSVTI 103
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT 125
LA + KE + +G + I +G AV + EL+ +T+
Sbjct: 104 LAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITS 149
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAI-AKEGFEKI 92
+T DG + + I++ + AK + +++ +EE GDGTTT +LA I A+ I
Sbjct: 57 LTNDGHAILREIDVA----HPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLI 112
Query: 93 SKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISAN-GDKAV-------G 144
K +P+ I + + A+ +K++SKPV + A I A+ G K V
Sbjct: 113 EKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMC 172
Query: 145 ELISDAMKRV 154
EL DA+K V
Sbjct: 173 ELALDAVKTV 182
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 28 SWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKE 87
S + +T DG T+ K I L N AK++ +++ ++E GDGTT+ TVL+ + +E
Sbjct: 50 SSNTCMVTNDGATILKSIPL----DNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLRE 105
Query: 88 G 88
Sbjct: 106 A 106
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DG T+ +++ Q+ K++ ++A + E GDGTT+ +
Sbjct: 48 GLDKMLVDDIGDFTVTNDGATILSLLDV----QHPAGKILVELAQQQDREIGDGTTSVVI 103
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAV-ETIKTHLKELSKPVTT 125
+A + K E + +P I G +A+ E I+ + LS V T
Sbjct: 104 IASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDT 150
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
+T DG + + I++ Q+ AK + +++ +EE GDGTT+ +LA + +
Sbjct: 47 MTNDGNAILREIQV----QHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLE 102
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELSKPVTT 125
+ +P + A++ + + LK++S PV T
Sbjct: 103 QQMHPTVVISAYRKALDDMISTLKKISIPVDT 134
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +++ S G I+ DG T+ K + + A+++ +V+ + EAGDGTT+ +
Sbjct: 43 GMDKMIKTSRGEIIISNDGHTILKQMAILHPV----ARMLVEVSAAQDSEAGDGTTSVVI 98
Query: 80 LARAIAKEGFEKISKGANP 98
L A+ ++KG +P
Sbjct: 99 LTGALLGAAERLLNKGIHP 117
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 1 GRNVILEQSWGSPKITKDDGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQ 60
G +LE + G PK G +L G+ K+TKDG + +++ Q+ A L+
Sbjct: 28 GLQSVLETNLG-PK-----GTLKMLVDGAGNIKLTKDGKVLLTEMQI----QSPTAVLIA 77
Query: 61 DVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA 108
A +E GDGTTT L + ++ I +G +P I G +A
Sbjct: 78 RAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIA 125
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G K+TKDG + +++ Q+ A L+ VA ++ GDGTT+ ++ + K+
Sbjct: 44 GDIKLTKDGNVLLHEMQI----QHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQAD 99
Query: 90 EKISKGANPIEIRRGVMLAVE 110
IS+G +P I G A E
Sbjct: 100 LYISEGLHPRIITEGFEAAKE 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,737,983
Number of Sequences: 62578
Number of extensions: 771528
Number of successful extensions: 2275
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1921
Number of HSP's gapped (non-prelim): 320
length of query: 788
length of database: 14,973,337
effective HSP length: 107
effective length of query: 681
effective length of database: 8,277,491
effective search space: 5636971371
effective search space used: 5636971371
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)