RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14622
(788 letters)
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 508 bits (1311), Expect = e-173
Identities = 200/373 (53%), Positives = 249/373 (66%), Gaps = 49/373 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVGK+GVITV++GKTL ELEV+EGM+FDRGY+SPYF+ + +VE ++ +LL++ KI
Sbjct: 165 KVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI 224
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
SSIQ ++P LEL +PL+I+AEDV+GEAL+TLVVN+L+ GL+V AVKAPGFGD RKA
Sbjct: 225 SSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKA 284
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L+D+A+ TGG V +E +KLED+ DLG ++V+TKDDT I+ G G K I R
Sbjct: 285 MLEDIAILTGGTVISEELG-LKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARI 343
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QIR QIE TTSDY++EKLQERLA+L+ GVAV+KVGG++EVE+ EKKDRV DALNATRAA
Sbjct: 344 AQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAA 403
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEGIVPGGG ALLR LDKL+ N D+ G
Sbjct: 404 VEEGIVPGGGVALLRASPALDKLKALNGDEKLG--------------------------- 436
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+EIV++AL P IA NAGVD SVVV KVLES GY
Sbjct: 437 ---------------------IEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPDGFGY 475
Query: 772 DAMNNEYVNMIQK 784
DA EYV+MI+
Sbjct: 476 DAATGEYVDMIEA 488
Score = 304 bits (781), Expect = 1e-94
Identities = 120/238 (50%), Positives = 164/238 (68%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV++E+S+GSPKITKDGVTVAK IEL+D F+N+GA+LV++VA+ TN+ AGDGTTTATV
Sbjct: 32 GRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATV 91
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LARAI KEG + ++ GANP++++RG+ AVE + LK+LSKPV T EEIAQVATISANG
Sbjct: 92 LARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANG 151
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D+ +GELI++AM++V +VE
Sbjct: 152 DEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVE 211
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
++ +LL++ KISSIQ ++P LEL +PL+I+AEDV+GEAL+TLV+ +L L+
Sbjct: 212 LENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLK 269
Score = 87.5 bits (218), Expect = 6e-18
Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK-EG 329
+ +VE ++ +LL++ KISSIQ ++P LEL +PL+I+AEDV+GEAL+TLVV K G
Sbjct: 207 KMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRG 266
Query: 330 VITV 333
+ V
Sbjct: 267 GLKV 270
Score = 37.4 bits (88), Expect = 0.025
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 231 KDVRFGPEVRGLMLQGVDILADA 253
KD++FG E R +L+GV+ LADA
Sbjct: 1 KDIKFGEEARKALLRGVNKLADA 23
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 445 bits (1148), Expect = e-148
Identities = 187/372 (50%), Positives = 239/372 (64%), Gaps = 50/372 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVGKEGVITV++ K ELEV+EGM+FDRGY+SPYF+ + + E ++ +L+++ KI
Sbjct: 167 KVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI 226
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
S+IQ ++P LE KPL+I+AEDV+GEAL+TLVVN+L+ L+V AVKAPGFGD RKA
Sbjct: 227 SNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L+D+A+ TGG V +E +KLED DLG ++V+TKD+T I+ G G KE I R
Sbjct: 287 MLEDIAILTGGTVISEELG-LKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARV 345
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QI+ QIE TTSDY+REKLQERLA+LA GVAV+KVG ++EVE+ EKKDRV DAL+ATRAA
Sbjct: 346 AQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEGIVPGGG ALLR L+ L+ N D+ATG
Sbjct: 406 VEEGIVPGGGVALLRAAPALEALKGLNGDEATG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGE-MG 770
+ IV +AL P IA NAG++ SVVV KV G+ G
Sbjct: 439 ---------------------INIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYG 477
Query: 771 YDAMNNEYVNMI 782
Y+A EYV+MI
Sbjct: 478 YNAATGEYVDMI 489
Score = 266 bits (684), Expect = 3e-80
Identities = 111/233 (47%), Positives = 158/233 (67%), Gaps = 40/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+S+G+P ITKDGVTVAK IEL+D F+N+GA+LV++VA+ TN+ AGDGTTTATV
Sbjct: 34 GRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ GANP++++RG+ AVE LK++SKPV EEIAQVATISANG
Sbjct: 94 LAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANG 153
Query: 140 DKAVGELISDAMKRVS---------AK-------------------------------VE 159
D+ +G+LI++AM++V +K E
Sbjct: 154 DEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAE 213
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
++ +L+++ KIS+IQ ++P LE KPL+I+AEDV+GEAL+TLV+ +L
Sbjct: 214 LENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKL 266
Score = 72.1 bits (178), Expect = 4e-13
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 274 VEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK-EGVIT 332
E ++ +L+++ KIS+IQ ++P LE KPL+I+AEDV+GEAL+TLVV K G +
Sbjct: 212 AELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLK 271
Query: 333 V 333
V
Sbjct: 272 V 272
Score = 36.3 bits (85), Expect = 0.068
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AKD++FG + R +L+GV+ LADA
Sbjct: 2 AKDIKFGEDARRKLLRGVNKLADA 25
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 441 bits (1136), Expect = e-146
Identities = 200/377 (53%), Positives = 251/377 (66%), Gaps = 52/377 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVGK+G ITV+DGKTL DELEV+EGM FDRGYISPYF+ K KVE ++ L+L+++ KI
Sbjct: 179 KVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKI 238
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
SSIQSI+P LE A ++PL+I+AEDV+GEAL TL++N+L+ GL+V AVKAPGFGDNRK
Sbjct: 239 SSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKD 298
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
LQD+AV TG V ++ +KL+D + LGS ++ +TKD+T+IL G G K +I R
Sbjct: 299 ILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERV 358
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
+ +R QIE TTS+Y++EKL+ERLA+L+ GVAV+KVGG+SEVEVNEKKDR+ DALNATRAA
Sbjct: 359 ELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAA 418
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETAN---ADQATGKKEDIDRRADQIRDQIEATTSDYE 708
VEEGIVPGGG ALLR +LDKLE N DQ TG
Sbjct: 419 VEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTG------------------------ 454
Query: 709 REKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESS-G 767
V+IV+ ALR P IA NAGV+ +VVV K+LE
Sbjct: 455 ------------------------VKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDP 490
Query: 768 EMGYDAMNNEYVNMIQK 784
GYDA EYVNM +
Sbjct: 491 SFGYDAQTGEYVNMFEA 507
Score = 269 bits (689), Expect = 7e-81
Identities = 113/233 (48%), Positives = 157/233 (67%), Gaps = 40/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNVI+EQ +GSPKITKDGVTVAK IE D+F+N+GA+L++ VA+ TN++AGDGTTTAT+
Sbjct: 46 GRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATI 105
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LARAI +EG + ++ G NP++++RG+ LAV+ + LKE S+PV T E+I VATISANG
Sbjct: 106 LARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANG 165
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D +G LI+DAM +V + KVE
Sbjct: 166 DVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVE 225
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
++ L+L+++ KISSIQSI+P LE A ++PL+I+AEDV+GEAL TL++ +L
Sbjct: 226 LENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKL 278
Score = 78.0 bits (193), Expect = 7e-15
Identities = 33/62 (53%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 273 KVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGKE-GVI 331
KVE ++ L+L+++ KISSIQSI+P LE A ++PL+I+AEDV+GEAL TL++ K G +
Sbjct: 223 KVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGL 282
Query: 332 TV 333
V
Sbjct: 283 KV 284
Score = 35.3 bits (82), Expect = 0.14
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 225 LRRAYAKDVRFGPEVRGLMLQGVDILADA 253
R K++RFG E R +L+G++ LADA
Sbjct: 9 RYRFKGKEIRFGDEARQSLLKGIERLADA 37
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 431 bits (1112), Expect = e-143
Identities = 193/371 (52%), Positives = 242/371 (65%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVGK+GVITV++ KTL ELEV EGM+FDRGY+SPYF+ + + +D L+LL++ KI
Sbjct: 167 KVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI 226
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
SS+Q ++P LE KPL+I+AEDV+GEAL+TLVVN+L+ GL+VAAVKAPGFGD RKA
Sbjct: 227 SSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L+D+A+ TGG V ++ +KLE++ DLG + ITKD+T I+ G G KE I+ R
Sbjct: 287 MLEDIAILTGGTVISEDLG-LKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARV 345
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QIR QIE TTSDY+REKLQERLA+LA GVAV+KVG ++EVE+ E+KDRV DALNATRAA
Sbjct: 346 AQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEGIVPGGG ALLR LD+L N DQA G
Sbjct: 406 VEEGIVPGGGVALLRAAKALDELAGLNGDQAAG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
VEIV++AL P IA NAG+D SVVV KVLE G+
Sbjct: 439 ---------------------VEIVRRALEAPLRQIAENAGLDGSVVVAKVLELEDGFGF 477
Query: 772 DAMNNEYVNMI 782
+A EY ++I
Sbjct: 478 NAATGEYGDLI 488
Score = 252 bits (646), Expect = 8e-75
Identities = 108/238 (45%), Positives = 159/238 (66%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV++++S+G+P ITKDGV++AK IEL+D F+N+GA+LV++VA+ TN+ AGDGTTTATV
Sbjct: 34 GRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+A+ +EG + ++ GANP++++RG+ AVE + LK L++PV+ EEIAQVATISANG
Sbjct: 94 LAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANG 153
Query: 140 DKAVGELISDAMKRVSAK----------------------------------------VE 159
D+ +GELI++AM++V
Sbjct: 154 DEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAV 213
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
+D L+LL++ KISS+Q ++P LE KPL+I+AEDV+GEAL+TLV+ +L L+
Sbjct: 214 LEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLK 271
Score = 75.2 bits (186), Expect = 4e-14
Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGKE-G 329
R + +D L+LL++ KISS+Q ++P LE KPL+I+AEDV+GEAL+TLVV K G
Sbjct: 209 RMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 268
Query: 330 VITV 333
+ V
Sbjct: 269 GLKV 272
Score = 30.9 bits (71), Expect = 3.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AK ++F E R + +GV+ LADA
Sbjct: 2 AKIIKFDEEARRALERGVNKLADA 25
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 400 bits (1029), Expect = e-131
Identities = 179/371 (48%), Positives = 238/371 (64%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVGK+GVITV++ K+L ELEV+EGM+FDRGYISPYF+ A+ +VE ++ +L+++ KI
Sbjct: 166 KVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI 225
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
S+I+ ++P LE KPL+I+AEDV+GEAL+TLVVN+L+ L V AVKAPGFGD RKA
Sbjct: 226 SNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKA 285
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L+D+A+ TGG V +E +KLE++ DLG ++ + KD+T I++G G K I R
Sbjct: 286 MLEDIAILTGGQVISEELG-LKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARV 344
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QI+ QIE TTSDY+REKLQERLA+LA GVAV+KVG ++E E+ EKK R+ DALNATRAA
Sbjct: 345 AQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRIEDALNATRAA 404
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEGIVPGGG ALLR A L+ L+ D+A G
Sbjct: 405 VEEGIVPGGGVALLRAAAALEGLKGDGEDEAIG--------------------------- 437
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
++IVK+AL P IA NAG+D +VV KV E G G+
Sbjct: 438 ---------------------IDIVKRALEAPLRQIAENAGLDGAVVAEKVKELKGNFGF 476
Query: 772 DAMNNEYVNMI 782
+A EY +++
Sbjct: 477 NAATGEYEDLV 487
Score = 239 bits (613), Expect = 2e-70
Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 40/239 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+S+G+P ITKDGVTVAK IEL+DKF+N+GA+LV++VA+ TN+ AGDGTTTATV
Sbjct: 33 GRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATV 92
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI KEG + ++ GANPIE++RG+ AVE + LK+LSKPV +EIAQVATISAN
Sbjct: 93 LAQAIVKEGLKNVAAGANPIELKRGIEKAVEAVVEELKKLSKPVKGKKEIAQVATISANN 152
Query: 140 DKAVGELISDAMKRVSA----------------------------------------KVE 159
D+ +G LI++AM++V +VE
Sbjct: 153 DEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVE 212
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLRS 218
++ +L+++ KIS+I+ ++P LE KPL+I+AEDV+GEAL+TLV+ +L L
Sbjct: 213 LENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNV 271
Score = 69.2 bits (170), Expect = 3e-12
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK-EG 329
+ +VE ++ +L+++ KIS+I+ ++P LE KPL+I+AEDV+GEAL+TLVV K G
Sbjct: 208 KMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 267
Query: 330 VITV 333
+ V
Sbjct: 268 TLNV 271
Score = 30.0 bits (68), Expect = 5.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AK ++F E R +L+GVD LADA
Sbjct: 1 AKQIKFDEEARKALLRGVDKLADA 24
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 385 bits (992), Expect = e-125
Identities = 186/372 (50%), Positives = 245/372 (65%), Gaps = 49/372 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVGKEGVITV++ KTL EL+V+EGM+FDRGY+SPYF+ + + E +D +LL E KI
Sbjct: 168 KVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI 227
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
S++Q ++P LE +PL+I+AEDV+GEAL+TLVVN+L+ GL+ AVKAPGFGD RKA
Sbjct: 228 SNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKA 287
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L+D+AV TGG V ++ +KLE++ LG ++ITK++T I+ G G K++I+ R
Sbjct: 288 MLEDIAVLTGGQVISEDLG-IKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARV 346
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QIR QIE TTSDY+REKLQERLA+LA GVAV++VGG++EVEV EKKDRV DAL+ATRAA
Sbjct: 347 KQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAA 406
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEGIVPGGG ALLR + L L+ ANAD+ G
Sbjct: 407 VEEGIVPGGGVALLRARSALRGLKGANADETAG--------------------------- 439
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
++IV++AL +P IATNAG + SVVV KV E G G+
Sbjct: 440 ---------------------IDIVRRALEEPLRQIATNAGFEGSVVVGKVAELPGNFGF 478
Query: 772 DAMNNEYVNMIQ 783
+A EY +M++
Sbjct: 479 NAQTGEYGDMVE 490
Score = 223 bits (570), Expect = 5e-64
Identities = 110/239 (46%), Positives = 162/239 (67%), Gaps = 40/239 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+S+G+P+ITKDGVTVAK IEL+DKF+N+GA++V++VA+ TN+ AGDGTTTATV
Sbjct: 35 GRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ G NP++++RG+ LAV + LK+++K VT+ +EIAQVATISANG
Sbjct: 95 LAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANG 154
Query: 140 DKAVGELISDAMKRVS----------------------------------------AKVE 159
D+++GE+I++AM +V + E
Sbjct: 155 DESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAE 214
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLRS 218
+D +LL E KIS++Q ++P LE +PL+I+AEDV+GEAL+TLV+ +L L+S
Sbjct: 215 LEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKS 273
Score = 70.1 bits (172), Expect = 2e-12
Identities = 28/38 (73%), Positives = 35/38 (92%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGKEGVITV++ KTL EL+V+EGM+FDRGY+SPYF+
Sbjct: 168 KVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFV 205
Score = 69.0 bits (169), Expect = 5e-12
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+ + E +D +LL E KIS++Q ++P LE +PL+I+AEDV+GEAL+TLVV K
Sbjct: 210 KMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNK 266
Score = 31.2 bits (71), Expect = 2.2
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AK++RF + R +L+GV+ILA+A
Sbjct: 3 AKEIRFSTDARDRLLRGVNILANA 26
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 370 bits (952), Expect = e-119
Identities = 191/371 (51%), Positives = 243/371 (65%), Gaps = 49/371 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVG EGVITV++ KT ELEV+EGM+FDRGY+SPYF+ A + E +D +L+ E KI
Sbjct: 168 KVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKI 227
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
S++Q ++P LE KPL+I+AEDV+GEAL+TLVVN+L+ GL+VAAVKAPGFGD RKA
Sbjct: 228 SNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKA 287
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L+D+A+ TGG V ++ +KLE++ LG ++V+ K++T I+ G G K +I+ R
Sbjct: 288 MLEDIAILTGGTVISEDLG-IKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRV 346
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QIR QIE TTSDY+REKLQERLA+LA GVAV++VG S+EVEV EKKDRV DAL+ATRAA
Sbjct: 347 AQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAA 406
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEGIVPGGG ALLR + LDKLETAN DQ TG
Sbjct: 407 VEEGIVPGGGVALLRAVKALDKLETANGDQRTG--------------------------- 439
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
VEIV++AL P IA NAG + SVVV K+ E G G+
Sbjct: 440 ---------------------VEIVRRALEAPVRQIAENAGAEGSVVVGKLREKPGGYGF 478
Query: 772 DAMNNEYVNMI 782
+A NEY ++
Sbjct: 479 NAATNEYGDLY 489
Score = 209 bits (534), Expect = 5e-59
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 40/239 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV++++S+G+P IT DGVT+AK IEL+DKF+N+GA++V++VA+ TN+ AGDGTTTATV
Sbjct: 35 GRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ GANP++++RG+ AV + LK ++PVTT EIAQVATISANG
Sbjct: 95 LAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANG 154
Query: 140 DKAVGELISDAMKRVSA----------------------------------------KVE 159
D +G L+++AM++V + E
Sbjct: 155 DAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAE 214
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLRS 218
+D +L+ E KIS++Q ++P LE KPL+I+AEDV+GEAL+TLV+ +L L+
Sbjct: 215 LEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKV 273
Score = 65.1 bits (159), Expect = 6e-11
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+ + E +D +L+ E KIS++Q ++P LE KPL+I+AEDV+GEAL+TLVV K
Sbjct: 210 KMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNK 266
Score = 35.1 bits (81), Expect = 0.15
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AK+V+F E R ML+GV+ILADA
Sbjct: 3 AKEVKFHVEAREKMLRGVNILADA 26
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 369 bits (949), Expect = e-119
Identities = 188/374 (50%), Positives = 244/374 (65%), Gaps = 50/374 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVG EGVITV++ K+L E++++EGMKFDRGY+SPYF+ A+ VE DA +LL E K+
Sbjct: 168 KVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL 227
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
S +Q+++P LE KPL+I+AEDV+GEAL+TLVVNRL+ GL+VAAVKAPGFGD RKA
Sbjct: 228 SGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKA 287
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L+D+A+ TGG + ++ +KLE++ LG ++VI K++T I+ G GKK DI+ R
Sbjct: 288 MLEDIAILTGGQLISEDLG-IKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARV 346
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QI+ QIE TTSDY+REKLQERLA+LA GVAV++VGG++EVEV EKKDRV DALNATRAA
Sbjct: 347 GQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAA 406
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
V+EGIVPGGG ALLR + ++ NAD G
Sbjct: 407 VQEGIVPGGGVALLRAKKAVGRINNDNADVQAG--------------------------- 439
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGE-MG 770
+ IV KAL P IA NAGV+ S+VV K+LE+ E G
Sbjct: 440 ---------------------INIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFG 478
Query: 771 YDAMNNEYVNMIQK 784
+DA EYV+M+ K
Sbjct: 479 FDAQTEEYVDMVAK 492
Score = 207 bits (529), Expect = 2e-58
Identities = 107/238 (44%), Positives = 157/238 (65%), Gaps = 40/238 (16%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV++E+S+G+P+ITKDGVTVAK IEL+DKF+N+GA++V++VA+ TN+ AGDGTTTATV
Sbjct: 35 GRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ G NP++++RG+ +AV + +++ +KPV + EIAQV TISANG
Sbjct: 95 LAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANG 154
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D A+G++I+ AM++V VE
Sbjct: 155 DAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVE 214
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLR 217
DA +LL E K+S +Q+++P LE KPL+I+AEDV+GEAL+TLV+ RL L+
Sbjct: 215 LDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLK 272
Score = 67.2 bits (164), Expect = 2e-11
Identities = 25/38 (65%), Positives = 34/38 (89%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVG EGVITV++ K+L E++++EGMKFDRGY+SPYF+
Sbjct: 168 KVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFV 205
Score = 64.1 bits (156), Expect = 1e-10
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+ VE DA +LL E K+S +Q+++P LE KPL+I+AEDV+GEAL+TLVV +
Sbjct: 210 KMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNR 266
Score = 33.3 bits (76), Expect = 0.57
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM 254
AKDV+F + R ML+GVDILA+A+
Sbjct: 3 AKDVKFSGDARDRMLRGVDILANAV 27
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 337 bits (864), Expect = e-106
Identities = 230/572 (40%), Positives = 316/572 (55%), Gaps = 99/572 (17%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAM----------------YRLPRVLRSQNLTPLLRAK 273
AK+V+FG + R ML+GVDILA+A+ + PR+ + + +
Sbjct: 3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKD---GVTVAKE 59
Query: 274 VEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGKEGVITV 333
+E +D + + + S + + A +LA+ + E ++ G + +
Sbjct: 60 IELEDKFENMGAQMVREVAS--KSADAAGDGTTTATVLAQAIVREGAKSVAAGMNP-MDL 116
Query: 334 KDGKTLTDELEVIEAYIYLCLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFII 393
K G L E V + VK+ K +T E+ + G IS
Sbjct: 117 KRGIDLAVEAVVAD---------------LVKNSKKVTSNDEIAQ-----VGTISANGDA 156
Query: 394 ELKLVLEYYIQTYIYLCLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAK 453
E+ L ++ KVG EGVITV++ K+L EL+V+EGM+FDRGYISPYF+ A
Sbjct: 157 EIGKFLADAMK-------KVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNAD 209
Query: 454 GAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKI 513
+VE DA +L++E K+SS+ ++P LE KPLVI+AEDV+GEAL+TLVVNRL+
Sbjct: 210 KMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRG 269
Query: 514 GLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKD 573
GL+VAAVKAPGFGD RKA LQD+A+ TGG ++ +KLE++ LG +++I K+
Sbjct: 270 GLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLG-IKLENVTLQMLGRAKKVMIDKE 328
Query: 574 DTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVE 633
+T I+ G GKK DI+ R QI+ QIE TTSDY+REKLQERLA+LA GVAV++VGG++EVE
Sbjct: 329 NTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVE 388
Query: 634 VNEKKDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRA 693
V E+KDRV DA++ATRAAVEEGIVPGGG ALLR L ++T N DQ TG
Sbjct: 389 VKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTG--------- 439
Query: 694 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGV 753
VEIV+KAL P IA NAG
Sbjct: 440 ---------------------------------------VEIVRKALSAPARQIAINAGE 460
Query: 754 DASVVVNKVLESSG-EMGYDAMNNEYVNMIQK 784
D SV+V K+LE G+D+ EY N++ K
Sbjct: 461 DGSVIVGKILEKEQYSYGFDSQTGEYGNLVSK 492
Score = 190 bits (484), Expect = 3e-52
Identities = 108/233 (46%), Positives = 155/233 (66%), Gaps = 40/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P+ITKDGVTVAK IEL+DKF+N+GA++V++VA+ + + AGDGTTTATV
Sbjct: 35 GRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ G NP++++RG+ LAVE + L + SK VT+ +EIAQV TISANG
Sbjct: 95 LAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANG 154
Query: 140 DKAVGELISDAMKRV----------------------------------------SAKVE 159
D +G+ ++DAMK+V +VE
Sbjct: 155 DAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVE 214
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
DA +L++E K+SS+ ++P LE KPLVI+AEDV+GEAL+TLV+ RL
Sbjct: 215 MDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRL 267
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 298 bits (764), Expect = 5e-92
Identities = 152/374 (40%), Positives = 228/374 (60%), Gaps = 49/374 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVG+EGVI++++GK+ ELE+ EGM+F++G+ISPYF+ + +V ++ +LL++ KI
Sbjct: 167 KVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKI 226
Query: 472 SSI-QSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRK 530
+ + Q ++P LE ++PL+I+AEDV+ EAL+TLV+N+L+ + V AV+APGFGD RK
Sbjct: 227 TLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRK 286
Query: 531 ATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRR 590
A L+D+A+ TGG V ++A + LE +Q LG I++TKD T I+ G +E + R
Sbjct: 287 AMLEDIAILTGGQVITEDAG-LSLETIQLDLLGQARRIIVTKDSTTII-ADGNEEQVKAR 344
Query: 591 ADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRA 650
+Q+R QIE S YE+EKLQERLA+L+ GVAV+KVG ++E E+ +KK R+ DA+NAT+A
Sbjct: 345 CEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKA 404
Query: 651 AVEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYERE 710
AVEEGIVPGGG L+ L ++ + +
Sbjct: 405 AVEEGIVPGGGATLVHLSENL----------------------------KTWAKNNLKED 436
Query: 711 KLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMG 770
+L +G V +A+ P IA NAG + SV++ KV E E+G
Sbjct: 437 EL---------------IGALIVA---RAILAPLKRIAENAGKNGSVIIEKVQEQDFEIG 478
Query: 771 YDAMNNEYVNMIQK 784
Y+A NN++VNM +
Sbjct: 479 YNAANNKFVNMYEA 492
Score = 175 bits (446), Expect = 3e-47
Identities = 90/234 (38%), Positives = 140/234 (59%), Gaps = 41/234 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+ +GSP+I DGVT+AK IEL+D +N G L++ A+ TN+ AGDGTTTATV
Sbjct: 34 GRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA AI K+G + ++ GANPI ++RG+ A + + + + E ++PV + I QVA+ISA
Sbjct: 94 LAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGN 153
Query: 140 DKAVGELISDAMKRVSA----------------------------------------KVE 159
D+ VG +I+DA+++V +V
Sbjct: 154 DEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVV 213
Query: 160 FQDALVLLSESKISSI-QSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
++ +LL++ KI+ + Q ++P LE ++PL+I+AEDV+ EAL+TLV+ +L
Sbjct: 214 QENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKL 267
Score = 54.7 bits (132), Expect = 1e-07
Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 271 RAKVEFQDALVLLSESKISSI-QSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK-E 328
R +V ++ +LL++ KI+ + Q ++P LE ++PL+I+AEDV+ EAL+TLV+ K
Sbjct: 209 RMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLR 268
Query: 329 GVITV 333
G++ V
Sbjct: 269 GIVNV 273
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 265 bits (679), Expect = 5e-79
Identities = 154/372 (41%), Positives = 229/372 (61%), Gaps = 48/372 (12%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVG++GV+T+++GK+ + L V+EGM+FDRGYISPYF+ ++ VE+ + +LL + KI
Sbjct: 222 KVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKI 281
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
++ + +I LE A PL+I+AED++ EAL+TLVVN+L+ L++AA+KAPGFG+ +
Sbjct: 282 TNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQ 341
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L D+A+ TGG V +E + L+ + LG+ ++V+TKD T I+ +E +++R
Sbjct: 342 YLDDIAILTGGTVIREEVG-LSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRV 400
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QI++ IEA DYE+EKL ER+A+L+ GVAV++VG +E E+ EKK RV DALNAT+AA
Sbjct: 401 AQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA 460
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEGIV GGG LLR + + D I+D +E +D +
Sbjct: 461 VEEGIVVGGGCTLLR----------------------LASKVDAIKDTLE---NDEQ--- 492
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSG-EMG 770
KVG +IVK+AL P IA NAGV+ SVV KVL + + G
Sbjct: 493 ---------------KVGA---DIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFG 534
Query: 771 YDAMNNEYVNMI 782
Y+A +Y +++
Sbjct: 535 YNAATGKYEDLM 546
Score = 153 bits (387), Expect = 5e-39
Identities = 91/233 (39%), Positives = 133/233 (57%), Gaps = 41/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE +GSPKI DGVTVAK +EL+D +NIGAKLV+ A TN+ AGDGTTT+ V
Sbjct: 90 GRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVV 149
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+ + EG + ++ GANP++I RG+ + + LK++SK V E+A VA +SA
Sbjct: 150 LAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGN 208
Query: 140 DKAVGELISDAMKRVSAK----------------------------------------VE 159
+ VG +I++AM +V K VE
Sbjct: 209 NYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVE 268
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+ + +LL + KI++ + +I LE A PL+I+AED++ EAL+TLV+ +L
Sbjct: 269 YDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKL 321
Score = 58.0 bits (140), Expect = 1e-08
Identities = 26/48 (54%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFIIEL-KLVLEY 401
KVG++GV+T+++GK+ + L V+EGM+FDRGYISPYF+ + K+ +EY
Sbjct: 222 KVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEY 269
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 274 VEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
VE+ + +LL + KI++ + +I LE A PL+I+AED++ EAL+TLVV K
Sbjct: 267 VEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNK 320
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 234 bits (600), Expect = 2e-68
Identities = 135/383 (35%), Positives = 190/383 (49%), Gaps = 78/383 (20%)
Query: 411 LKVGK-----EGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVL 465
KVGK +G+I VK+ ELEV+EGM FD+GY+SPYF+ ++ +L
Sbjct: 168 EKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMP-----DKRLENPKIL 222
Query: 466 LSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGF 525
L + K+ + +P LE+ S KPL+I+AED +GEAL+TLVVN L+ G V VKAPG
Sbjct: 223 LLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281
Query: 526 GDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKE 585
D KA L+D+A+ TG V ++ + LG + + KD T I+ G+G
Sbjct: 282 DDLAKAYLEDIAILTGRRVKKED------LGERLAKLGGAKIVSVLKDLTTIVLGEGAAG 335
Query: 586 DIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDAL 645
++ E T DY+ EKLQER A+ A GVA + V G++EVE++EK+ R+ DAL
Sbjct: 336 LVE----------ETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDAL 384
Query: 646 NATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATT 704
N RAAVEEG IVPGGG A + L + A T
Sbjct: 385 NVVRAAVEEGKIVPGGGAAEIEAALRLRE---------------------------YAMT 417
Query: 705 SDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLE 764
+ E+L +E +AL P +A NAG+D V++K+
Sbjct: 418 VEGGDEQL-------------------GIEAFARALEAPPRQLAENAGLDPIEVLSKLRS 458
Query: 765 SSGE--MGYDAMNNEY-VNMIQK 784
+ G DA EY +MI+
Sbjct: 459 AHATTNYGIDAFTGEYEDDMIEA 481
Score = 168 bits (428), Expect = 1e-44
Identities = 88/238 (36%), Positives = 125/238 (52%), Gaps = 50/238 (21%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRN +L S G IT DGVT+ K IEL ++ GAKL+ +VA ++EAGDGTTTA V
Sbjct: 35 GRNKMLVDSGGDITITNDGVTILKEIEL----EHPGAKLLVEVAKKQDDEAGDGTTTAVV 90
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPE-----EIAQVAT 134
LA A+ KE + I+ G +P I+RG LAVE LKE++KPV+ E I VA+
Sbjct: 91 LAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVAS 150
Query: 135 ISANGDKAVGELISDAMKRVS--------------------------------------- 155
SAN D+ +GEL+ +A+++V
Sbjct: 151 KSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF 210
Query: 156 -AKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
++ +LL + K+ + +P LE+ S KPL+I+AED +GEAL+TLV+ L
Sbjct: 211 MPDKRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNIL 267
Score = 53.0 bits (128), Expect = 4e-07
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 5/44 (11%)
Query: 354 LKVGK-----EGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
KVGK +G+I VK+ ELEV+EGM FD+GY+SPYF+
Sbjct: 168 EKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFM 211
Score = 46.8 bits (112), Expect = 4e-05
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 273 KVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVV 325
++ +LL + K+ + +P LE+ S KPL+I+AED +GEAL+TLVV
Sbjct: 213 DKRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVV 264
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 188 bits (480), Expect = 3e-52
Identities = 106/392 (27%), Positives = 149/392 (38%), Gaps = 142/392 (36%)
Query: 410 CLKVGKE------GVITVKDGKTLT-DELEVIEGMKFDRGYISPYFINTAKGAKVEFQDA 462
LKVGKE GVI V+ K + ++ E++ GM FD+GY+SPY ++A
Sbjct: 167 VLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM-------PKRLENA 219
Query: 463 LVLLSESKISSIQSIIPALELANSKRKPLVILAED-VDGEALSTLVVNRLKIGLQVAAVK 521
+LL + K+ V++AE +D EAL L L + AV+
Sbjct: 220 KILLLDCKLEY------------------VVIAEKGIDDEALHYLAK------LGIMAVR 255
Query: 522 APGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK----DDTLI 577
RK L+ +A ATG + LEDL DLG+ G + TK T I
Sbjct: 256 R-----VRKEDLERIAKATGATIVSR------LEDLTPEDLGTAGLVEETKIGDEKYTFI 304
Query: 578 LKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEK 637
KG VA + + G++EVE++E
Sbjct: 305 EGCKG------------------------------------GKVATILLRGATEVELDEA 328
Query: 638 KDRVTDALNATRAAVEE-GIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQI 696
+ + DAL A RAAVE+ GIVPGGG A + L++L A GK
Sbjct: 329 ERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEEL----AKTLPGK----------- 373
Query: 697 RDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDAS 756
E+L +E AL T+A NAG+D
Sbjct: 374 -----------------EQLG---------------IEAFADALEVIPRTLAENAGLDPI 401
Query: 757 VVVNKVLESSGEMGYDA----MNNEYVNMIQK 784
VV K+ E G +A E V+M +
Sbjct: 402 EVVTKLRAKHAEGGGNAGGDVETGEIVDMKEA 433
Score = 164 bits (418), Expect = 1e-43
Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 71/240 (29%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G P IT DG T+ K IE+ ++ AKL+ +VA + ++E GDGTTT V
Sbjct: 32 GMDKMLVDSLGDPTITNDGATILKEIEV----EHPAAKLLVEVAKSQDDEVGDGTTTVVV 87
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKP--VTTPEEIAQVATISA 137
LA + KE + ++ G +P EI RG AVE LKE++ P V EE+ +VAT S
Sbjct: 88 LAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSL 147
Query: 138 N------GDKAVGELISDAMKRVS------------------------------------ 155
N GD +GEL+ DA+ +V
Sbjct: 148 NSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGY 207
Query: 156 ----AKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAED-VDGEALSTLVMY 210
++A +LL + K+ V++AE +D EAL L
Sbjct: 208 LSPYMPKRLENAKILLLDCKLEY------------------VVIAEKGIDDEALHYLAKL 249
Score = 45.9 bits (110), Expect = 6e-05
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 353 CLKVGKE------GVITVKDGKTLT-DELEVIEGMKFDRGYISPYFIIELK 396
LKVGKE GVI V+ K + ++ E++ GM FD+GY+SPY L+
Sbjct: 167 VLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLE 217
Score = 31.2 bits (72), Expect = 2.5
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 21/66 (31%)
Query: 273 KVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAED-VDGEALSTLVVGKEGVI 331
++A +LL + K+ V++AE +D EAL L K G++
Sbjct: 213 PKRLENAKILLLDCKLEY------------------VVIAEKGIDDEALHYLA--KLGIM 252
Query: 332 TVKDGK 337
V+ +
Sbjct: 253 AVRRVR 258
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 155 bits (394), Expect = 2e-40
Identities = 96/415 (23%), Positives = 154/415 (37%), Gaps = 138/415 (33%)
Query: 396 KLVLEYYIQTYIYLCLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGA 455
KLV++ + I VG GVI ++ G ++ E+IEG+ D+GY+SP
Sbjct: 141 KLVVDAVL--LIIEKFDVGNIGVIKIEGGSL--EDSELIEGIVLDKGYLSP-------DM 189
Query: 456 KVEFQDALVLLSESKISSIQS---------------------IIPALELANSKRKPLVIL 494
++ +LL + + ++ ++P LE LVI+
Sbjct: 190 PKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEAEEKQLLPLLEKIVDAGVNLVII 249
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
+ +D AL L N + +K L+ LA ATG V L
Sbjct: 250 QKGIDDLALHFLAKNGIL-----------ALRRVKKEDLERLAKATGATVVSS------L 292
Query: 555 EDLQATDLGSVG---EIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQ 611
+DL+ +LGS G E I +D T ++G
Sbjct: 293 DDLEPDELGSAGKVEEREIGEDKTTFIEGC------------------------------ 322
Query: 612 ERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAAVE-EGIVPGGGTALLRCIAV 670
L+ VA + + G+++ E++E + + DALNA +AA++ EG+VPGGG A L
Sbjct: 323 -----LSGKVATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAELELSRA 377
Query: 671 LDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGG 730
L + A +GK E+L
Sbjct: 378 LREY----AKSVSGK----------------------------EQLG------------- 392
Query: 731 SSVEIVKKALRQPCMTIATNAGVDASVVVNKVL---ESSGEMGYDAMNNEYVNMI 782
+E +AL T+A NAG+D V+ K+ + +G DA E +M
Sbjct: 393 --IEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKKGNNLGIDADTGEIGDMK 445
Score = 143 bits (363), Expect = 2e-36
Identities = 68/263 (25%), Positives = 106/263 (40%), Gaps = 69/263 (26%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRN +L G IT DG T+ K IE++ AKL+ + A + +EE GDGTTTA V
Sbjct: 13 GRNKMLVNHGGKITITNDGATILKEIEIQHPA----AKLLVEAAKSQDEEVGDGTTTAVV 68
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT-TPEEIAQVATISAN 138
LA + +E + I G +P +I RG LA+E L+ELS PV+ E++ VA S N
Sbjct: 69 LAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDDEDLLNVARTSLN 128
Query: 139 GDKA------VGELISDAMKRVSAKV---------------------------------- 158
+ +G+L+ DA+ + K
Sbjct: 129 SKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDSELIEGIVLDKGYLSPD 188
Query: 159 ---EFQDALVLLSESKISSIQS---------------------IIPALELANSKRKPLVI 194
++ +LL + + ++ ++P LE LVI
Sbjct: 189 MPKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEAEEKQLLPLLEKIVDAGVNLVI 248
Query: 195 LAEDVDGEALSTLVMYRLPRVLR 217
+ + +D AL L + + R
Sbjct: 249 IQKGIDDLALHFLAKNGILALRR 271
Score = 34.9 bits (81), Expect = 0.15
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 25/93 (26%)
Query: 275 EFQDALVLLSESKISSIQS---------------------IIPALELANSKRKPLVILAE 313
++ +LL + + ++ ++P LE LVI+ +
Sbjct: 192 RLENPKILLLDCPLEYEKTEKVIISTAEELERLLEAEEKQLLPLLEKIVDAGVNLVIIQK 251
Query: 314 DVDGEALSTLVVGKEGVITVKDGKTLTDELEVI 346
+D AL L K G++ ++ + ++LE +
Sbjct: 252 GIDDLALHFLA--KNGILALR--RVKKEDLERL 280
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 114 bits (287), Expect = 8e-29
Identities = 65/257 (25%), Positives = 97/257 (37%), Gaps = 90/257 (35%)
Query: 410 CLKVGKE------GVITVKDGKTLT-DELEVIEGMKFDRGYISPYFINTAKGAKVEFQDA 462
LKVG + GVI V+ + ++ E++ G+ FD+GY SPY ++A
Sbjct: 31 VLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM-------PKRLENA 83
Query: 463 LVLLSESKISSIQSIIPALELANSKRKPLVILAED-VDGEALSTLVVNRLKIGLQVAAVK 521
+LL + + V++AE +D AL L + AV+
Sbjct: 84 KILLLDCPLEY------------------VVIAEKGIDDLALHYLAK------AGIMAVR 119
Query: 522 APGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKD----DTLI 577
+K L+ +A ATG + LEDL DLG+ + TK T I
Sbjct: 120 R-----VKKEDLERIARATGATIVSS------LEDLTPEDLGTAELVEETKIGEEKLTFI 168
Query: 578 LKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEK 637
KG A + + G++EVE++E
Sbjct: 169 EGCKG------------------------------------GKAATILLRGATEVELDEV 192
Query: 638 KDRVTDALNATRAAVEE 654
K + DAL A RAAVEE
Sbjct: 193 KRSLHDALCAVRAAVEE 209
Score = 41.7 bits (99), Expect = 6e-04
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 353 CLKVGKE------GVITVKDGKTLT-DELEVIEGMKFDRGYISPYFIIELK 396
LKVG + GVI V+ + ++ E++ G+ FD+GY SPY L+
Sbjct: 31 VLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLE 81
Score = 31.7 bits (73), Expect = 0.98
Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 64/137 (46%)
Query: 127 EEIAQVATISAN-----GDKAVGELISDAMKRV--------------------------- 154
E + QVAT S N D +G+L+ DA+ +V
Sbjct: 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSEL 61
Query: 155 -------------SAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAED-VD 200
++A +LL + + V++AE +D
Sbjct: 62 VVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------------------VVIAEKGID 103
Query: 201 GEALSTLVMYRLPRVLR 217
AL L + V R
Sbjct: 104 DLALHYLAKAGIMAVRR 120
Score = 28.6 bits (65), Expect = 9.7
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 21/66 (31%)
Query: 273 KVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAED-VDGEALSTLVVGKEGVI 331
++A +LL + + V++AE +D AL L K G++
Sbjct: 77 PKRLENAKILLLDCPLEY------------------VVIAEKGIDDLALHYLA--KAGIM 116
Query: 332 TVKDGK 337
V+ K
Sbjct: 117 AVRRVK 122
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 62.3 bits (152), Expect = 6e-10
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
IT DG T+ K +++ ++ AK++ +VA +EE GDGTTTA VLA + ++ + +
Sbjct: 53 ITNDGATILKEMDI----EHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLD 108
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE-----IAQVATISANGDKAVGELIS 148
+ +P I G LA E L E++ V ++ IA+ + ++ G +A + ++
Sbjct: 109 QNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTS-LTGKGAEAAKDKLA 167
Query: 149 D 149
D
Sbjct: 168 D 168
Score = 31.5 bits (72), Expect = 2.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
G +E V+E + + DAL A+E+G +V GGG
Sbjct: 370 GGTEHVVDELERALEDALRVVADALEDGKVVAGGG 404
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 57.8 bits (140), Expect = 1e-08
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G IT DG T+ K +++ ++ AK++ +VA +EE GDGTTTA V
Sbjct: 40 GMDKMLVDSLGDVTITNDGATILKEMDI----EHPAAKMLVEVAKTQDEEVGDGTTTAVV 95
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--TPEEIAQVATISA 137
LA + ++ + + + +P I G A E + E++ ++ + + +VA S
Sbjct: 96 LAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSL 155
Query: 138 NGDKAVGELISD 149
KA E+ D
Sbjct: 156 TS-KASAEVAKD 166
Score = 31.2 bits (71), Expect = 2.5
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 583 KKEDIDRRADQ-----IRDQIEATTSDYEREKLQERL------------ARLASGVAVLK 625
KK DI++ A + E T SD L E + V +L
Sbjct: 312 KKSDIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDKMVFVEGCKNPKAVTIL- 370
Query: 626 VGGSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
+ G +E V+E + + DAL+ +A+E+G +V GGG
Sbjct: 371 LRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGG 407
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 52.9 bits (127), Expect = 5e-07
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G +T DG T+ +++ N AKL+ +++ + ++E GDGTT V
Sbjct: 51 GMDKMLISPDGDITVTNDGATILSQMDV----DNPIAKLMVELSKSQDDEIGDGTTGVVV 106
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPV 123
LA A+ ++ E + KG +PI+I G A HL+E+S +
Sbjct: 107 LAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLEEISDEI 150
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 48.8 bits (117), Expect = 8e-06
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
+T DG T+ + +++ + AKL+ +++ + ++E GDGTT VLA A+ ++ + +
Sbjct: 61 VTNDGATILEKMDV----DHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLD 116
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE 128
+G +PI I G A + HL+E++ + +
Sbjct: 117 RGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPD 151
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 48.2 bits (115), Expect = 1e-05
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + ++ S G ++ DG T+ K +++ AK + D+A + + E GDGTT+ +
Sbjct: 42 GMDKLIVGSNGKATVSNDGATILKLLDIVHP----AAKTLVDIAKSQDSEVGDGTTSVVI 97
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE 128
LA + KE I +G +P I RG A+ +KE++ VT E
Sbjct: 98 LAGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKIKEIA--VTIDSE 144
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 47.7 bits (114), Expect = 2e-05
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G+ +T DG T+ K + L N AK++ D++ +EE GDGTT+ VLA + +E
Sbjct: 61 GNVTVTNDGATILKSVWL----DNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAE 116
Query: 90 EKISKGANPIEIRRGVMLAVETIKTHLKELS 120
+ + + +P I G +A++ + L+E++
Sbjct: 117 KLLDQKIHPQTIIEGWRMALDVARKALEEIA 147
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 46.5 bits (111), Expect = 5e-05
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 27 QSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAK 86
G I+ DG T+ K +++ AK + D+A + + E GDGTT+ VLA K
Sbjct: 47 DGRGKVTISNDGATILKLLDIVHP----AAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLK 102
Query: 87 EGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE 128
E I G +P I RG A++ +KE++ V +E
Sbjct: 103 EAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIA--VNIDKE 142
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 46.0 bits (109), Expect = 7e-05
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 23 VILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLAR 82
++ S + +T DG T+ K I L N AK++ +++ ++E GDGTT+ TVLA
Sbjct: 42 ILQSASSNTIMVTNDGATILKSIGL----DNPAAKVLVNISKVQDDEVGDGTTSVTVLAA 97
Query: 83 AIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELS 120
+ +E + I++ +P I G LA + L + +
Sbjct: 98 ELLREAEKLINQKIHPQTIIEGYRLATKAALDALTKSA 135
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 45.4 bits (108), Expect = 1e-04
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
IT DG T+ K + + + AK++ +++ + EAGDGTT+ VLA A+ +
Sbjct: 46 ITNDGATILKQMSV----LHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLK 101
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELSKPV--TTPEEIAQVATISAN 138
KG +P I +A + L +S PV E + + AT S N
Sbjct: 102 KGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLN 148
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 45.4 bits (108), Expect = 1e-04
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G +T DG T+ K I + N AK++ D++ ++E GDGTT+ TVLA + +E
Sbjct: 49 GGVTVTNDGATILKSIGV----DNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAE 104
Query: 90 EKISKGANPIEIRRGVMLAVET 111
+ +++ +P I G +A
Sbjct: 105 KLVAQKIHPQTIIEGYRMATAA 126
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 43.6 bits (103), Expect = 4e-04
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L G IT DG T+ K +E++ AK++ ++A + E GDGTT+ +
Sbjct: 36 GLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQLQDREVGDGTTSVVI 91
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLA----VETIKTHLK 117
+A + K E + +P I G LA V+ IK +L
Sbjct: 92 IAAELLKRANELVKNKVHPTSIISGYRLALKEAVKYIKENLS 133
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 43.4 bits (103), Expect = 5e-04
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G IT DG T+ K +E++ AK++ ++A ++E GDGTT+ ++A + K
Sbjct: 42 GDVTITNDGATILKLLEVEHP----AAKILVELAQLQDKEVGDGTTSVVIIAAELLKRAN 97
Query: 90 EKISKGANPIEIRRGVMLAV-ETIKTHLKELSKPVTT--PEEIAQVA-------TISANG 139
E + + +P I G LA E +K + LS V E + VA I A+
Sbjct: 98 ELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADS 157
Query: 140 DKAVGELISDAMKRV 154
D ++ DA+ V
Sbjct: 158 D-FFANMVVDAILAV 171
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 42.8 bits (101), Expect = 6e-04
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G +T DG + + I++ + AK + +++ +EE GDGTT+ +LA +
Sbjct: 50 GGIVMTNDGNAILREIDV----AHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAE 105
Query: 90 EKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISAN-GDKAV---GE 145
+ + +P I R A++ + L+E+S PV ++ A + I + G K V +
Sbjct: 106 PFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSD 165
Query: 146 LISD 149
L+ D
Sbjct: 166 LMCD 169
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 42.3 bits (100), Expect = 9e-04
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G +T DG + + I++ + AK + +++ +EE GDGTT+ +LA I
Sbjct: 50 GGIVLTNDGNAILREIDV----AHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAE 105
Query: 90 EKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATI--SANGDKAV---G 144
+ +G +P I + A+E L+E+S PV + AQ+ I S G K V
Sbjct: 106 PFLERGIHPTVIIKAYRKALEDALKILEEISIPV-DVNDRAQMLKIIKSCIGTKFVSRWS 164
Query: 145 ELIS----DAMKRVS 155
+L+ DA+K V+
Sbjct: 165 DLMCNLALDAVKTVA 179
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 41.9 bits (99), Expect = 0.001
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G K+TKDG + ++ Q+ A ++ A ++ GDGTT+ +L + K+
Sbjct: 46 GDIKLTKDGNVLLSEMQ----IQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAE 101
Query: 90 EKISKGANPIEIRRGVMLAVETIKTHLKELSKPV 123
I +G +P I G LA L+ PV
Sbjct: 102 RYIQEGVHPRIITEGFELAKNKALKFLESFKVPV 135
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 39.7 bits (93), Expect = 0.006
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
+T D T+ + +E+ Q+ AKL+ + E GDGT VLA + + E I
Sbjct: 56 VTNDAATILRELEV----QHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLNKAEELIR 111
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELSK-PVTTPEEIAQVAT 134
G +P EI +G +A++ L+EL + + ++
Sbjct: 112 MGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLRDKKELIK 153
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 39.5 bits (93), Expect = 0.007
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
+T D T+ + +E Q+ AKL+ + EE GDGT VLA + ++ E +
Sbjct: 46 VTSDAATILRELE----VQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLR 101
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELS----KPVTTPEEIAQV 132
G +P EI G A++ L+EL + + EE+++
Sbjct: 102 MGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKA 144
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 39.4 bits (92), Expect = 0.007
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +++ G IT DG T+ K + + + AK++ +++ + EAGDGTT+ +
Sbjct: 33 GMDKMIQDGKGEVIITNDGATILKQMAV----LHPAAKMLVELSKAQDIEAGDGTTSVVI 88
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPV 123
LA A+ ++KG +P I A + L E+S PV
Sbjct: 89 LAGALLGACERLLNKGIHPTIISESFQSAADEAIKILDEMSIPV 132
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 34.3 bits (79), Expect = 0.29
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G K+TKDG + +++ Q+ A ++ A +E GDGTT+ +L + K+
Sbjct: 50 GDIKLTKDGNVLLNEMQI----QHPTASMIARAATAQDEITGDGTTSTVILIGELLKQAE 105
Query: 90 EKISKGANPIEIRRGVMLA 108
I +G +P I G +A
Sbjct: 106 RYILEGVHPRIITEGFEIA 124
>gnl|CDD|218753 pfam05794, Tcp11, T-complex protein 11. This family consists of
several eukaryotic T-complex protein 11 (Tcp11) related
sequences. Tcp11 is only expressed in fertile adult
mammalian testes and is thought to be important in sperm
function and fertility. The family also contains the
yeast Sok1 protein which is known to suppress cyclic
AMP-dependent protein kinase mutants.
Length = 431
Score = 33.4 bits (77), Expect = 0.42
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 663 ALLRCI-AVLD--KLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREKLQERLAR 718
LR I VL+ KL+ AN + +R + + +YER+K QE L +
Sbjct: 140 EGLRGIFEVLELMKLDMANF------------QIRSLRPLLIENSVEYERKKFQELLEK 186
>gnl|CDD|213771 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream
region protein. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed so far only in
the Chlamydiae, always as part of a two-gene operon,
upstream of the homolog of GcvH. Its function is unknown
[Unknown function, General].
Length = 686
Score = 33.3 bits (76), Expect = 0.65
Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 59/239 (24%)
Query: 109 VETIKTHLKELSKPVT----TPEEIAQVATISANGDKAVGELISDAMKRVSAKVEFQDAL 164
+E + +L ++ P + P ++ + TI A + VG S KRV
Sbjct: 348 LEAFEVYLSLVAAPSSDILDVPTKLLPIETIKAKEPRLVGRRFSVCYKRV---------- 397
Query: 165 VLLSESKISSIQSIIPALELANSKRKP---LVILAEDVDGEALSTLVMYRLPRVLRSQNL 221
K+ ++ +P +E+ ++ P IL + + E S+L + QNL
Sbjct: 398 ------KLQDLEKYVPMVEVYQWQQNPENFQEILQQFPELETCSSLKDF--------QNL 443
Query: 222 TPLLR-RAYAKDVRFGPEVRGLMLQGVDILADAMYRLPRVLRSQNLTPLLRAKVEFQDAL 280
P L + ++ R +L+ R+L A+ E +
Sbjct: 444 KPALVEKIHSF-------TRKEILRA---------DPGRILSEL-------AQQEQKSEE 480
Query: 281 VLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVV----GKEGVITVKD 335
V LS K S + I + LA + V+ D E T++V E V+ ++
Sbjct: 481 VFLSAGKDSLLPGIQDGVRLAKVLLQNEVLDYYSQDDEYYYTIIVKNRFETEEVLPYRE 539
>gnl|CDD|219771 pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA)
PRD domain. Mga is a DNA-binding protein that activates
the expression of several important virulence genes in
group A streptococcus in response to changing
environmental conditions. This corresponds to the PRD
like region.
Length = 217
Score = 30.7 bits (70), Expect = 2.4
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 118 ELSKPVTTPEEIAQVATISANGDKAVG--ELISDAMKR-VSAKVEFQDALVLLSESKISS 174
T Q +S K + + + + K E AL S + I +
Sbjct: 100 SFGSLFWTSVHKEQFIELSYKLTKFQLLLDPLEKLLGLSFTNKDELIKALAFFSRTFIFN 159
Query: 175 IQSIIP---ALELANSKRKPLVILA 196
+Q +IP +L L + +
Sbjct: 160 LQFLIPEYKSLYLKFYQGNFKLYKI 184
>gnl|CDD|239951 cd04514, Taspase1_like, Taspase1_like domains; Taspase1 catalyzes
the cleavage of the mix lineage leukemia (MLL) nuclear
protein and transcription factor TFIIA. Taspase1 is a
threonine aspartase, a member of the Ntn hydrolase
superfamily and the type 2 asparaginase family. A
threonine residue acts as the active site nucleophile in
both endopeptidease and protease activities to cleave
polypeptide substrates after an aspartate residue. The
Taspase1 proenzyme undergoes autoproteolysis into alpha
and beta subunits. The N-terminal residue of the beta
subunit is a threonine which is the active catalytic
residue. The active enzyme is a heterotetramer.
Length = 303
Score = 30.8 bits (70), Expect = 2.4
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 702 ATTSDYEREKLQERLARLAS--GVAVLKVGGSSVEIVKKALRQPCMTIATNAGV------ 753
A + EK + + A + +L+ GGS+++ V A++ + TNAG
Sbjct: 9 AGYHSHSNEKEYKEACKRACQKAIELLRAGGSALDAVVAAIQVLEDSPLTNAGYGSNLTL 68
Query: 754 ------DASVVVNKVLESSG 767
DAS++ K L
Sbjct: 69 DGTVECDASIMDGKTLRFGA 88
>gnl|CDD|212163 cd11640, HutP, Histidine Utilizing Protein, the hut operon positive
regulatory protein. The HutP protein family regulates
the expression of 'hut' structural genes in Bacillus and
other bacteria. It forms an anti-termination complex,
which recognizes three UAG triplet units, separated by
four non-conserved nucleotides on the RNA terminator
region. In an L-histidine and Mg2+ dependent manner,
HutP binds to the nascent hut mRNA leader transcript,
and the ensuing anti-termination complex inhibits
formation of a stem-loop terminator, clearing the way
for transcription of the hut structural genes.
Length = 134
Score = 29.9 bits (68), Expect = 2.4
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 703 TTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGV 753
T + E ++L+++L V VGG E + K + + A GV
Sbjct: 14 TETREEEDELKKKLLEKGIKVVATDVGGKFSESIPKIIES-AVVAAKRTGV 63
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 31.6 bits (72), Expect = 2.4
Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 11/147 (7%)
Query: 581 KGKKEDIDRRADQIRDQIEATTSDYE-----REKLQERLARLASGVAVLKVGGSSEVEVN 635
+ +K+ + R + Q+E + E ++L E LA L + LK S
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 636 EKKDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQATGK--KEDIDRRA 693
E+ + + L + +EE + T + + ++ + N + + E ++ R
Sbjct: 361 EELEAELEELESRLEELEEQL----ETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
Query: 694 DQIRDQIEATTSDYEREKLQERLARLA 720
++++ +IE E +L+E A L
Sbjct: 417 ERLQQEIEELLKKLEEAELKELQAELE 443
>gnl|CDD|225056 COG2145, ThiM, Hydroxyethylthiazole kinase, sugar kinase family
[Coenzyme metabolism].
Length = 265
Score = 30.7 bits (70), Expect = 2.5
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 132 VATISANGDKAVG--ELISDAMKRVSAKVEFQDALVL----LSESKISSIQSIIPALELA 185
V +ANG A+G +++DA + V + DAL++ LS +I Q++ A++ A
Sbjct: 25 VQNFTANGLLALGASPVMADAPEEVEEFAKIADALLINIGTLSAERI---QAMRAAIKAA 81
Query: 186 NSKRKPLV 193
N KP+V
Sbjct: 82 NESGKPVV 89
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 31.3 bits (71), Expect = 2.8
Identities = 31/142 (21%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 585 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRV--- 641
E+ +R Q+R Q+ A + E L+ LA + + E EV K +
Sbjct: 370 EERERELKQVRAQLAALPTVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQA 429
Query: 642 TDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIE 701
L R +EE + L + E+I + Q RD++
Sbjct: 430 LSRLGLWRGDLEE-------------LVALPVPSAEQVQAFLKEAEEIMQAKRQKRDRLL 476
Query: 702 ATTSDYEREKLQERLARLASGV 723
D E +LQ R A V
Sbjct: 477 ELEEDLETLELQLRHLDAAGAV 498
>gnl|CDD|182241 PRK10100, PRK10100, DNA-binding transcriptional regulator CsgD;
Provisional.
Length = 216
Score = 30.2 bits (68), Expect = 2.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 86 KEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSK 121
KE K+ GA+ EI R + ++ T+KTHL L K
Sbjct: 161 KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFK 196
>gnl|CDD|237344 PRK13306, ulaD, 3-keto-L-gulonate-6-phosphate decarboxylase;
Provisional.
Length = 216
Score = 30.3 bits (69), Expect = 3.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 333 VKDGKTLTDELEVIEAYIYLCLKVGKEGV----------ITVKDGKTLTDELEVIEGMKF 382
++D K + +E+++IE L L G + V I V D K D +++ M F
Sbjct: 19 IEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALYPDKIIVADTKI-ADAGKILAKMAF 77
Query: 383 DRG 385
+ G
Sbjct: 78 EAG 80
>gnl|CDD|233691 TIGR02027, rpoA, DNA-directed RNA polymerase, alpha subunit,
bacterial and chloroplast-type. This family consists of
the bacterial (and chloroplast) DNA-directed RNA
polymerase alpha subunit, encoded by the rpoA gene. The
RNA polymerase catalyzes the transcription of DNA into
RNA using the four ribonucleoside triphosphates as
substrates. The amino terminal domain is involved in
dimerizing and assembling the other RNA polymerase
subunits into a transcriptionally active enzyme. The
carboxy-terminal domain contains determinants for
interaction with DNA and with transcriptional activator
proteins [Transcription, DNA-dependent RNA polymerase].
Length = 297
Score = 30.3 bits (69), Expect = 3.2
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 306 KPLVILAEDVDGEALSTLVVGKEGVITVKDGKTLTDELEVIEAYIYLCLKVGKEGVITVK 365
K LV+ +E DGE TL GV+T D K ++E++ + + T+
Sbjct: 64 KQLVVKSEG-DGERTMTLSKKGPGVVTAGDIKAPPGDVEIVNPDLVIA---------TLT 113
Query: 366 DGKTLTDELEVIEGMKFDRGYIS 388
+ L EL V + RGY+
Sbjct: 114 EPADLEIELRV----ERGRGYVP 132
>gnl|CDD|221101 pfam11382, DUF3186, Protein of unknown function (DUF3186). This
bacterial family of proteins has no known function.
Length = 307
Score = 30.4 bits (69), Expect = 3.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 34 ITKDGVTVAKGIELKDKFQNI-GAKLVQDVANNTNEEAGDGTTTA 77
+T+ G TV I L D F + A ++ V NN + AGD +TA
Sbjct: 106 LTQAGATVVGRITLTDNFVDPESADKLKSVVNNDLKPAGDQLSTA 150
>gnl|CDD|234323 TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha
subunit. This family of proteins contains a C-terminal
thiamine diphosphate (TPP) binding domain typical of
flavodoxin/ferredoxin oxidoreductases (pfam01855) as
well as an N-terminal domain similar to the gamma
subunit of the same group of oxidoreductases
(pfam01558). The genes represented by this model are
always found in association with a neighboring gene for
a beta subunit (TIGR02177) which also occurs in a
4-subunit (alpha/beta/gamma/ferredoxin) version of the
system. This alpha/gamma plus beta structure was used to
define the set of sequences to include in this model.
This pair of genes is not consistantly observed in
proximity to any electron acceptor genes, but is found
next to putative ferredoxins or ferredoxin-domain
proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum
USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM
15236, Rhodopseudomonas palustris BisB5, Os,
Sphingomonas wittichii RW1 and Streptomyces
clavuligerus. Other potential acceptors are also
sporadically observed in close proximity including
ferritin-like proteins, reberythrin, peroxiredoxin and a
variety of other flavin and iron-sulfur
cluster-containing proteins. The phylogenetic
distribution of this family encompasses archaea, a
number of deeply-branching bacterial clades and only a
small number of firmicutes and proteobacteria. The
enzyme from Sulfolobus has been characterized with
respect to its substrate specificity which is described
as wide, encompassing various 2-oxoacids such as
2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme
from Hydrogenobacter thermophilus has been shown to have
a high specificity towards 2-oxoglutarate and is one of
the key enzymes in the reverse TCA cycle in this
organism. Furthermore, considering its binding of
coenzyme A, it can be reasonably inferred that the
product of the reaction is succinyl-CoA. The genes for
this enzyme in Prevotella intermedia 17, Persephonella
marina EX-H1 and Picrophilus torridus DSM 9790 are in
close proximity to a variety of TCA cycle genes.
Persephonella marina and P. torridus are believed to
encode complete TCA cycles, and none of these contains
the lipoate-based 2-oxoglutarate dehydrogenase
(E1/E2/E3) system. That system is presumed to be
replaced by this one. In fact, the lipoate system is
absent in most organisms possessing a member of this
family, providing additional circumstantial evidence
that many of these enzymes are capable of acting as
2-oxoglutarate dehydrogenases and.
Length = 562
Score = 30.6 bits (70), Expect = 3.6
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 24/77 (31%)
Query: 69 EAGDG-TTTATVLARAIAKEGFE------------------KISKGANPIEIRRG---VM 106
AGDG T + A+A+A+ G+ +I P+ V+
Sbjct: 9 AAGDGIQTAGEIFAKALARAGYYVFTFRDYPSRIRGGHSYFQIRISDEPVRSPGDGVDVL 68
Query: 107 LAV--ETIKTHLKELSK 121
+A+ ET+K HL EL
Sbjct: 69 VALNPETLKEHLDELRP 85
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 4.3
Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 24/147 (16%)
Query: 585 EDIDRRADQIRDQIEATTSDYE---------REKLQERLARLASGVAVLKVGGSSEVEVN 635
E ++ + +R+ I T + E RE+L+E +A + + V
Sbjct: 254 ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVE 313
Query: 636 EKKDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQ 695
+++ + D R +EE V A+ +D++ RA++
Sbjct: 314 ARREELEDRDEELRDRLEECRVAAQAH-------------NEEAESLREDADDLEERAEE 360
Query: 696 IRDQIEATTSDYE--REKLQERLARLA 720
+R++ S+ E RE +++R +
Sbjct: 361 LREEAAELESELEEAREAVEDRREEIE 387
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 29.5 bits (66), Expect = 8.2
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 638 KDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQAT----------GKKE 687
D ++ +L T+A+ E + TA + A+ L A A + KK
Sbjct: 192 VDGISLSLEETKASEVEHLSASLKTATEKVDALEKDLHAAQAKLDSGQALTKEELDAKKA 251
Query: 688 DIDRRADQIRDQIEATTSDYEREKLQERLARLASG----VAVLKVGGSSVEIVKKA 739
++ + + A +R+ E ARL V L G + +++A
Sbjct: 252 ELSKALAALEAANAADEDPQDRDAAVEAAARLMGAARALVPGLITDGKTCSAIREA 307
>gnl|CDD|238575 cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz)
kinase catalyzes the phosphorylation of the
hydroxylgroup of Thz. A reaction that allows cells to
recycle Thz into the thiamine biosynthesis pathway, as
an alternative to its synthesis from cysteine, tyrosine
and 1-deoxy-D-xylulose-5-phosphate.
Length = 242
Score = 29.0 bits (66), Expect = 8.2
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 132 VATISANGDKAVGE--LISDAMKRVSAKVEFQDALVL----LSESKISSIQSIIPALELA 185
V AN A+G ++SDA + V + ALV+ L+ I++++ A + A
Sbjct: 19 VMNFVANVLLAIGASPIMSDAPEEVEELAKIAGALVINIGTLTSE---QIEAMLKAGKAA 75
Query: 186 NSKRKPLV 193
N KP+V
Sbjct: 76 NQLGKPVV 83
>gnl|CDD|225309 COG2511, GatE, Archaeal Glu-tRNAGln amidotransferase subunit E
(contains GAD domain) [Translation, ribosomal structure
and biogenesis].
Length = 631
Score = 29.2 bits (66), Expect = 9.3
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 17/90 (18%)
Query: 79 VLARAIAKEGFEKISKG--ANP-------IEIRRGVMLAVETIKTHLKELSKPVTTPEEI 129
V IAKE E+I K NP E L+ E ++ + E+ + +
Sbjct: 532 VSEGKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELSEEEVEKIIDEIIE-----SNL 586
Query: 130 AQVATISANGDKAVGELISDAMKRVSAKVE 159
+ G A+G L+ M ++ + +
Sbjct: 587 DVIK---ERGMGAMGLLMGRVMAKLRGRAD 613
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.355
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,072,827
Number of extensions: 4157262
Number of successful extensions: 4208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4128
Number of HSP's successfully gapped: 221
Length of query: 788
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 683
Effective length of database: 6,280,432
Effective search space: 4289535056
Effective search space used: 4289535056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (27.9 bits)