RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14622
(788 letters)
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 443 bits (1143), Expect = e-148
Identities = 177/372 (47%), Positives = 225/372 (60%), Gaps = 49/372 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVGKEGVITV+DG L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL++ KI
Sbjct: 167 KVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
S+I+ ++P LE KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA
Sbjct: 227 SNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA 286
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
LQD+A TGG V +E ++LE DLG +VI KD T I+ G G++ I R
Sbjct: 287 MLQDIATLTGGTVISEEIG-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV 345
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QIR QIE TSDY+REKLQER+A+LA GVAV+KVG ++EVE+ EKK RV DAL+ATRAA
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEG+V GGG AL+R + L L NADQ G
Sbjct: 406 VEEGVVAGGGVALIRVASKLADLRGQNADQNVG--------------------------- 438
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
+++ +A+ P I N G + SVV N V G GY
Sbjct: 439 ---------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 772 DAMNNEYVNMIQ 783
+A EY NMI
Sbjct: 478 NAATEEYGNMID 489
Score = 259 bits (663), Expect = 3e-77
Identities = 100/233 (42%), Positives = 146/233 (62%), Gaps = 40/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI EG + ++ G NP++++RG+ AV LK LS P + + IAQV TISAN
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANS 153
Query: 140 DKAVGELISDAMKRVS---------AK-------------------------------VE 159
D+ VG+LI++AM +V VE
Sbjct: 154 DETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVE 213
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+ +LL++ KIS+I+ ++P LE KPL+I+AEDV+GEAL+TLV+ +
Sbjct: 214 LESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM 266
Score = 72.2 bits (178), Expect = 3e-13
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
VE + +LL++ KIS+I+ ++P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 209 TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNT 265
Score = 37.1 bits (87), Expect = 0.023
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AKDV+FG + ML+GV++LADA
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADA 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 441 bits (1137), Expect = e-147
Identities = 180/373 (48%), Positives = 241/373 (64%), Gaps = 50/373 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
+VG EGVITV++ K + E+EV+EGM+FDRGY+SPYF+ A E +DA +LL E K+
Sbjct: 168 RVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKL 227
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
SS+Q ++P LE +KPL+I+AEDV+GEAL+TLVVN+L+ GL++AAVKAPGFGD RKA
Sbjct: 228 SSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKA 287
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
LQD+A+ TGG V ++ +KLE++ LG ++ I KD+T I+ G G+K +I+ R
Sbjct: 288 MLQDIAILTGGQVISEDLG-MKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARV 346
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QIR QIE TTSDY+REKLQER+A+LA GVAV++VGG +E+EV E+KDRV DALNATRAA
Sbjct: 347 SQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAA 406
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
V+EGIV GGG AL++ VL+ L AN+DQ G
Sbjct: 407 VQEGIVVGGGVALVQGAKVLEGLSGANSDQDAG--------------------------- 439
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGE-MG 770
+ I+++AL P IA NAGVD +VV KV ESS + G
Sbjct: 440 ---------------------IAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFG 478
Query: 771 YDAMNNEYVNMIQ 783
++A EY +M +
Sbjct: 479 FNAQTEEYGDMFK 491
Score = 259 bits (664), Expect = 2e-77
Identities = 101/233 (43%), Positives = 152/233 (65%), Gaps = 40/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV++++S+G+P+ITKDGV+VAK IEL DKF+N+GA++V++VA+ TN+EAGDGTTTATV
Sbjct: 35 GRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATV 94
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ G NP++++RG+ +A + +K ++PV E+AQV TISANG
Sbjct: 95 LAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANG 154
Query: 140 DKAVGELISDAMKRVSA----------------------------------------KVE 159
+ +G+ I++AM+RV E
Sbjct: 155 ESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAE 214
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+DA +LL E K+SS+Q ++P LE +KPL+I+AEDV+GEAL+TLV+ +L
Sbjct: 215 LEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKL 267
Score = 72.6 bits (179), Expect = 2e-13
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+ E +DA +LL E K+SS+Q ++P LE +KPL+I+AEDV+GEAL+TLVV K
Sbjct: 210 KMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNK 266
Score = 36.8 bits (86), Expect = 0.026
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AK+V+F + R ML+GV+ILADA
Sbjct: 3 AKEVKFNSDARDRMLKGVNILADA 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 437 bits (1127), Expect = e-145
Identities = 155/372 (41%), Positives = 215/372 (57%), Gaps = 50/372 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVG EGVITV++ T +LE+ EGM+FD+GYIS YF+ + + +D +LL SK+
Sbjct: 166 KVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKV 225
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
S+++ ++P LE KPL+I+AEDV+GEALSTLVVN+++ + AVKAPGFGD RKA
Sbjct: 226 STVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKA 285
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
LQD+A+ TGG V +E + LE+ + LG ++V+TKD+T I++G G + I R
Sbjct: 286 MLQDMAILTGGQVISEEVG-LTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRV 344
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
QIR +IE + SDY+REKLQERLA+LA GVAV+K G ++EVE+ E+K R+ DA+ +AA
Sbjct: 345 AQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAA 404
Query: 652 VEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREK 711
VEEGIV GGG LL+ LD+L+ D+ATG
Sbjct: 405 VEEGIVAGGGVTLLQAAPTLDELK-LEGDEATG--------------------------- 436
Query: 712 LQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGY 771
IVK AL P IA N+G++ VV KV G
Sbjct: 437 ---------------------ANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGL 475
Query: 772 DAMNNEYVNMIQ 783
+A Y +++
Sbjct: 476 NAQTGVYEDLLA 487
Score = 252 bits (646), Expect = 6e-75
Identities = 95/233 (40%), Positives = 143/233 (61%), Gaps = 41/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+ WG+P IT DGV++AK IEL+D ++ IGA+LV++VA T++ AGDGTTTATV
Sbjct: 34 GRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+A+ +EG ++ GANP+ ++RG+ AVE + L + +K V T E+IA A ISA
Sbjct: 94 LAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG- 152
Query: 140 DKAVGELISDAMKRVS---------AK-------------------------------VE 159
D+++G+LI++AM +V +
Sbjct: 153 DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAV 212
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+D +LL SK+S+++ ++P LE KPL+I+AEDV+GEALSTLV+ ++
Sbjct: 213 LEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKI 265
Score = 72.6 bits (179), Expect = 2e-13
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
R + +D +LL SK+S+++ ++P LE KPL+I+AEDV+GEALSTLVV K
Sbjct: 208 RQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNK 264
Score = 36.8 bits (86), Expect = 0.030
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AK + + E R + +G++ LADA
Sbjct: 2 AKTIAYDEEARRGLERGLNALADA 25
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 435 bits (1121), Expect = e-144
Identities = 168/375 (44%), Positives = 235/375 (62%), Gaps = 52/375 (13%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 471
KVGKEG+ITV++ K+L EL+ +EG +FD+GYISPYF+ + + +DA +L+ E K+
Sbjct: 166 KVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV 225
Query: 472 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 531
S+++ ++P LE KPL+I+AEDV+GEAL+TLVVN+L+ L VAAVKAPGFGD RK
Sbjct: 226 SNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKE 285
Query: 532 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRA 591
L+D+A TGG V +E KLE+ + LG + ITKD+T I+ GKGKKEDI+ R
Sbjct: 286 MLKDIAAVTGGTVISEELG-FKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARI 344
Query: 592 DQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAA 651
+ I+ ++E T S+Y REKLQERLA+LA GVAV++VG ++E E+ EKK R DALNATRAA
Sbjct: 345 NGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAA 404
Query: 652 VEEGIVPGGGTALLRCIAVLDKL-ETANADQATGKKEDIDRRADQIRDQIEATTSDYERE 710
VEEGIVPGGG LLR I+ +++L + D+ATG
Sbjct: 405 VEEGIVPGGGVTLLRAISAVEELIKKLEGDEATG-------------------------- 438
Query: 711 KLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGE-- 768
+IV++AL +P IA NAG + SV+V ++L +
Sbjct: 439 ----------------------AKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPR 476
Query: 769 MGYDAMNNEYVNMIQ 783
G++A E+V+M++
Sbjct: 477 YGFNAATGEFVDMVE 491
Score = 253 bits (648), Expect = 3e-75
Identities = 103/233 (44%), Positives = 148/233 (63%), Gaps = 41/233 (17%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+ +GSP ITKDGVTVAK +EL+D +NIGA+L+++VA+ TN+ AGDGTTTATV
Sbjct: 34 GRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANG 139
LA+AI +EG + ++ GANP+ ++RG+ AVE +K L+ PV + I +VATISAN
Sbjct: 94 LAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN- 152
Query: 140 DKAVGELISDAMKRVS---------AK-------------------------------VE 159
D VG+LI+DAM++V +K
Sbjct: 153 DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAV 212
Query: 160 FQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+DA +L+ E K+S+++ ++P LE KPL+I+AEDV+GEAL+TLV+ +L
Sbjct: 213 LEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKL 265
Score = 72.2 bits (178), Expect = 3e-13
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+ +DA +L+ E K+S+++ ++P LE KPL+I+AEDV+GEAL+TLVV K
Sbjct: 208 TMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNK 264
Score = 36.8 bits (86), Expect = 0.031
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADA 253
AK + F R + +GV+ +A+A
Sbjct: 2 AKILVFDEAARRALERGVNAVANA 25
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A
{Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A
1fya_A 1jon_A 1dk7_A 1dkd_A
Length = 201
Score = 266 bits (683), Expect = 8e-85
Identities = 101/198 (51%), Positives = 134/198 (67%), Gaps = 1/198 (0%)
Query: 426 TLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELAN 485
+ EGM+FDRGY+SPYFIN + VE ++ +LL + KIS+I+ ++P LE
Sbjct: 4 SHHHHHHGSEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVA 63
Query: 486 SKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVF 545
KPLVI+AEDV+GEAL+TLVVN ++ ++VA+VKAPGFGD RKA LQD+A T G V
Sbjct: 64 KASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVI 123
Query: 546 GDEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDY 605
+E ++LE DLG +VI KD T I+ G G++ I R QIR QIE +TSDY
Sbjct: 124 SEEIG-LELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDY 182
Query: 606 EREKLQERLARLASGVAV 623
+REKLQER+A+LA GV +
Sbjct: 183 DREKLQERVAKLAGGVKL 200
Score = 77.6 bits (192), Expect = 2e-16
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 670 VLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAV 725
V++K T D G++ I R QIR QIE +TSDY+REKLQER+A+LA GV +
Sbjct: 146 VINKDTTTIIDGV-GEEGAIAARVTQIRQQIEESTSDYDREKLQERVAKLAGGVKL 200
Score = 71.1 bits (175), Expect = 3e-14
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
VE ++ +LL + KIS+I+ ++P LE KPLVI+AEDV+GEAL+TLVV
Sbjct: 32 SGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNN 88
Score = 68.0 bits (167), Expect = 4e-13
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 158 VEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
VE ++ +LL + KIS+I+ ++P LE KPLVI+AEDV+GEAL+TLV+ +
Sbjct: 35 VELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNM 89
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding;
2.20A {Mycobacterium tuberculosis}
Length = 194
Score = 262 bits (672), Expect = 3e-83
Identities = 94/195 (48%), Positives = 132/195 (67%), Gaps = 1/195 (0%)
Query: 430 ELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRK 489
ELE EG+ FD+G++S YF+ + +DAL+LL + KISS+ ++P LE K
Sbjct: 1 ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGK 60
Query: 490 PLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEA 549
PL+I+AEDV+GEAL+TLVVN ++ L+ AVK P FGD RKA L+DLAV TGG V +A
Sbjct: 61 PLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDA 120
Query: 550 SPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREK 609
+ L ++ LGS +V++KDDT+I+ G G E + RA +R +I+ + SD++REK
Sbjct: 121 G-MVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREK 179
Query: 610 LQERLARLASGVAVL 624
L ERLA+LA GVAV+
Sbjct: 180 LGERLAKLAGGVAVI 194
Score = 77.6 bits (192), Expect = 2e-16
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 670 VLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVL 726
V+ K +T D G E + RA +R +I+ + SD++REKL ERLA+LA GVAV+
Sbjct: 139 VVSKDDTVIVDGG-GTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI 194
Score = 70.7 bits (174), Expect = 3e-14
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+ +DAL+LL + KISS+ ++P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 25 NQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNA 81
Score = 67.6 bits (166), Expect = 4e-13
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 158 VEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+DAL+LL + KISS+ ++P LE KPL+I+AEDV+GEAL+TLV+ +
Sbjct: 28 AVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAI 82
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division,
ATP-binding, phosphorylation; 1.70A {Thermus
thermophilus} SCOP: c.8.5.1
Length = 145
Score = 181 bits (462), Expect = 9e-54
Identities = 72/146 (49%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 436 GMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILA 495
G +FD+GYISPYF+ + + +DA +L+ E K+S+++ ++P LE KPL+I+A
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 496 EDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 555
EDV+GEAL+TLVVN+L+ L VAAVKAPGFGD RK L+D+A TGG V +E KLE
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELG-FKLE 119
Query: 556 DLQATDLGSVGEIVITKDDTLILKGK 581
+ + LG + ITKD+T I+ GK
Sbjct: 120 NATLSMLGRAERVRITKDETTIVGGK 145
Score = 70.4 bits (173), Expect = 2e-14
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
+ +DA +L+ E K+S+++ ++P LE KPL+I+AEDV+GEAL+TLVV K
Sbjct: 19 TMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNK 75
Score = 67.3 bits (165), Expect = 2e-13
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 158 VEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
+DA +L+ E K+S+++ ++P LE KPL+I+AEDV+GEAL+TLV+ +L
Sbjct: 22 AVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKL 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.7 bits (193), Expect = 5e-15
Identities = 89/574 (15%), Positives = 170/574 (29%), Gaps = 182/574 (31%)
Query: 47 LKDKFQNIGAKLVQDV--------ANNTNEEAGD--GTTTATVLARAIAKEGFEKISKGA 96
L K + + K V++V + E T + R + +K
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY- 129
Query: 97 NPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGE--LISDAMK-- 152
+ R ++ L EL P + + +G G+ + D
Sbjct: 130 ---NVSRLQP--YLKLRQALLELR-----PAKN-----VLIDGVLGSGKTWVALDVCLSY 174
Query: 153 RVSAKVEFQ-----------DALVLL-------------------SESKISSIQSIIPAL 182
+V K++F+ VL S + I SI L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 183 -ELANSKRKP--LVILAEDV-DGEALS-------TLVMYRLPRVLRSQNLTPLLRRAYAK 231
L SK L++L +V + +A + L+ R + +T L A
Sbjct: 235 RRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILL------TTRFKQVTDFLSAATTT 287
Query: 232 DVRFGPEVRGLML-QGVDILADAM----YRLPRVLRSQNLTPLLRAKV--EFQDALV--- 281
+ L + +L + LPR + + N P + + +D L
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWD 345
Query: 282 ----LLSESKISSIQSIIPALELANSKR--KPLVILAEDVDGEALSTLVVGKEGVITVK- 334
+ + + I+S + LE A ++ L + I
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--------------IPTIL 391
Query: 335 ------DGKTLTDELEVIEAYIY-LCLKVGKEGVITVKDG-----KTLTDELE----VIE 378
D + V + + Y L K KE I++ L +E +++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 379 GMKFDRGYISPYFIIELKLVLEYYIQTYI-------------------YLCL-----KVG 414
+ + S + L+ Y ++I +L K+
Sbjct: 452 HYNIPKTFDSDDL---IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 415 KEGVITVKDGKTLTDELEVIEGMKFDRGYIS---PYFINTAKGAKVEFQDALVLLSESKI 471
+ G ++ + L+ + KF + YI P + E +
Sbjct: 509 HDSTAWNASG-SILNTLQQL---KFYKPYICDNDPKY-------------------ERLV 545
Query: 472 SSIQSIIPALE--LANSKRKPLVILAEDVDGEAL 503
++I +P +E L SK L+ +A + EA+
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 68.3 bits (166), Expect = 7e-12
Identities = 97/685 (14%), Positives = 204/685 (29%), Gaps = 219/685 (31%)
Query: 147 ISDAMKRVSAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALST 206
+ D K + +K E +++S+ +S + L SK++ +V + E L
Sbjct: 38 VQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLL---SKQEEMV---QKFVEEVLRI 89
Query: 207 LVMYR-LPRVLRSQNLTP-LLRRAYAKDVRFGPEVRGLMLQGVDILADAMYRLPRVLRSQ 264
Y+ L ++++ P ++ R Y + D +Y +V
Sbjct: 90 --NYKFLMSPIKTEQRQPSMMTRMYIEQR------------------DRLYNDNQVFAKY 129
Query: 265 NLTPLLRAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLV 324
N++ R + ++ + LEL + V+ +
Sbjct: 130 NVS---RLQ-------------PYLKLRQAL--LEL---RPAKNVL-------------I 155
Query: 325 VGKEGVITVKDGKT-LTDELEVIEAYIYLCLKVGKEGV--ITVKDGKTLTDELEVIEGM- 380
G G GKT + L+V +Y C + + +K+ + LE+++ +
Sbjct: 156 DGVLGS-----GKTWVA--LDVCLSYKVQCKMDF--KIFWLNLKNCNSPETVLEMLQKLL 206
Query: 381 -KFDRGYIS--------PYFIIELKLVLEYYIQTYIYL-CLKVGKEGVITVKDGKTLTD- 429
+ D + S I ++ L +++ Y CL V L +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------------LLNV 253
Query: 430 -ELEVIEGMKF---------DRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSI-- 477
+ + F++ A + + L+ ++ S+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 478 -IPALELANSKRK--PLVI--LAE-------------DVDGEALSTLV---VNRLKIGLQ 516
+L P + +AE V+ + L+T++ +N L+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---- 367
Query: 517 VAAVKAPGFGDNRKATLQDLAVATGGIVFGDEAS-PVKLEDLQATDLGSVGEIVITKDDT 575
P + L+ VF A P L L + VI D
Sbjct: 368 ------P---AEYRKMFDRLS------VFPPSAHIPTIL-------LSLIWFDVIKSDVM 405
Query: 576 LILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVN 635
+++ K ++++ E+T S + L L
Sbjct: 406 VVVNKLHKYSLVEKQPK------ESTISIPS---IYLELKVKLENEYAL----------- 445
Query: 636 EKKDRVTDALNATRAAVEEGIVP--------------------GGGTALLRCIAVLD--- 672
+ D N + + ++P L R + LD
Sbjct: 446 --HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFRF 502
Query: 673 ---KLE-TANADQATGKKEDIDRRADQIRDQIEATTSDYER--EKLQERLARLASGVAVL 726
K+ + A A+G + ++ + I YER + + L ++ +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL--- 559
Query: 727 KVGGSSVEIVKKALRQPCMTIATNA 751
+ ++++ AL I A
Sbjct: 560 -ICSKYTDLLRIALMAEDEAIFEEA 583
Score = 59.9 bits (144), Expect = 3e-09
Identities = 91/606 (15%), Positives = 180/606 (29%), Gaps = 180/606 (29%)
Query: 115 HLKELSKPVTTPEEIAQVA--------------TISANGDKAVGELISDAMKRVSAKVEF 160
++++ K + + EEI + T+ + ++ V + + + ++
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-------- 88
Query: 161 QDALVLLSESKISSIQSIIPAL--ELANSKRKPLVILAEDVDGEALSTLVMYRLPRVLRS 218
+ L+S K Q P++ + +R L D + + + RL L+
Sbjct: 89 INYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLK- 139
Query: 219 QNLTPLLRRAYAKDVRFGPEVRGLMLQGV-----DILADAMYRLPRVLRS---------- 263
LR+A ++R P + +++ GV +A + +V
Sbjct: 140 ------LRQA-LLELR--PA-KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 264 -------------QNL----TPLLRAKVEFQDALVLLSESKISSIQSIIPALELANSKRK 306
Q L P ++ + + L S + ++ ++ + N
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--- 246
Query: 307 PLVILAEDV-DGEALS-------TLV------------VGKEGVITVKD-GKTLTDELEV 345
L++L +V + +A + L+ I++ TLT + EV
Sbjct: 247 -LLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EV 303
Query: 346 IEAYI-YLCLKVGKE------------GVI--TVKDGKTLTDELEVIEGMKFDRGYISPY 390
+ YL + +I +++DG D + + K
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT------ 357
Query: 391 FIIELKL-VLE-YYIQTYIYLCLKVGKEGV-ITVK-------DGKTLTDELEVIEGMKF- 439
IIE L VLE + + L V I D + V + K+
Sbjct: 358 -IIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 440 ------DRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVI 493
IS I K+E + AL I + + P +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYAL----HRSI--VDHYNIPKTFDSDDLIPPYL 469
Query: 494 ----------------LAEDVDGEALSTLVVN----RLKIGLQVAAVKAPGFGDNRKATL 533
E + + ++ KI A A G N TL
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTL--FRMVFLDFRFLEQKIRHDSTAWNASGSILN---TL 524
Query: 534 QDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLIL------KGKGKKEDI 587
Q L I D + + L + E +I T +L + + E+
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 588 DRRADQ 593
++ +
Sbjct: 584 HKQVQR 589
Score = 50.6 bits (120), Expect = 2e-06
Identities = 39/295 (13%), Positives = 84/295 (28%), Gaps = 66/295 (22%)
Query: 554 LEDLQATDLGSVGEIVITK---DDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKL 610
+++ D+ + + +++K D I+ K R + + E + E L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 611 QERLARLASGVAVLKVGGSSEVEV-NEKKDR------VTDALNATRAA------------ 651
+ L S + + S + E++DR V N +R
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 652 -VEEGIV----PGGGTALLRCIAVLD-KLETANADQA----TGKKEDID----------R 691
+ ++ G G + L K++ + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 692 RADQIRDQIEATTSDYER--EKLQERLARL------ASGVAVLK-VGGSSVEIVKKALRQ 742
+ D +S+ + +Q L RL + + VL V + + A
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAW-NAFNL 264
Query: 743 PCMTIAT--NAGVDASVVVNKVLESSGEMGYDAMNNE--------YVNMIQKVLP 787
C + T V + S + + + Y++ + LP
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Score = 45.6 bits (107), Expect = 6e-05
Identities = 61/397 (15%), Positives = 120/397 (30%), Gaps = 127/397 (31%)
Query: 12 SPKITKDDGRNVI--LEQSWGSPK--ITKDGVTVAKGIELKDKFQNIGAKL--------V 59
+ K+ + + L +S + V AK + F N+ K+ V
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---NAF-NLSCKILLTTRFKQV 277
Query: 60 QDVANNTN------EEAGDGTT---TATVLARAIAKEGFEKISKGANPIEIRRGVMLAVE 110
D + + T ++L + + P E+ +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQDLPREVLTTNPRRLS 331
Query: 111 TIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVSAKVEFQ---DALVLL 167
I +++ + T + V N DK + +I ++ + E++ D L +
Sbjct: 332 IIAESIRD---GLATWDNWKHV-----NCDK-LTTIIESSLNVLEPA-EYRKMFDRLSVF 381
Query: 168 SES-KISS--------------IQSIIPALE---LANSKRKPLVI--------LAEDVDG 201
S I + + ++ L L + K I L ++
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 202 E-AL-STLV-MYRLPRVLRSQNLTP-------------------------LLRRAYAKDV 233
E AL ++V Y +P+ S +L P L R + D
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DF 500
Query: 234 RF-GPEVR--GLMLQG----VDILAD-AMYRLPRVLRSQNLTPLLRAKVEFQDALVLLSE 285
RF ++R ++ L Y+ P + + E
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDP-----------------KYE 542
Query: 286 SKISSIQSIIPALE--LANSKRKPLVILAEDVDGEAL 320
+++I +P +E L SK L+ +A + EA+
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 67.2 bits (165), Expect = 1e-11
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L S G I+ DG T+ K +++ ++ AK++ +V+ + GDGTTTA VL+
Sbjct: 50 MLVDSIGDIIISNDGATILKEMDV----EHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGE 105
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAV 143
+ K+ + +G +P I G LAV + + E+++ T + ++A + +G K
Sbjct: 106 LLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSG-KNT 164
Query: 144 G-------ELISDAMKRV 154
G +L+ A+ V
Sbjct: 165 GLSNDFLADLVVKAVNAV 182
Score = 32.5 bits (75), Expect = 0.53
Identities = 51/271 (18%), Positives = 84/271 (30%), Gaps = 94/271 (34%)
Query: 521 KAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK--DDTLIL 578
+K+ ++ LA ATG + D L+DL + LG + K DD +
Sbjct: 306 GIYAVRRVKKSDMEKLAKATGAKIVTD------LDDLTPSVLGEAETVEERKIGDDRMTF 359
Query: 579 KGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKK 638
K V++L + G ++ V+E +
Sbjct: 360 VMGCKN---------------------------------PKAVSIL-IRGGTDHVVSEVE 385
Query: 639 DRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIR 697
+ DA+ E+G + GGG + +L A+ G+
Sbjct: 386 RALNDAIRVVAITKEDGKFLWGGGAVE---AELAMRLAKY-ANSVGGR------------ 429
Query: 698 DQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASV 757
E+LA +E KAL T+A NAG+D
Sbjct: 430 ----------------EQLA---------------IEAFAKALEIIPRTLAENAGIDPIN 458
Query: 758 VVNKV----LESSGEMGYDAMNNEYVNMIQK 784
+ K+ + +G D NN +M K
Sbjct: 459 TLIKLKADDEKGRISVGVDLDNNGVGDMKAK 489
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 65.6 bits (161), Expect = 3e-11
Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L G +T DG + + I++ Q+ AK + +++ +EE GDGTT+ +LA
Sbjct: 37 MLLDPMGGIVMTNDGNAILREIQV----QHPAAKSMIEISRTQDEEVGDGTTSVIILAGE 92
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDK 141
+ + + +P + A++ + + LK++S PV T + + + S K
Sbjct: 93 MLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITT-K 151
Query: 142 AVG-------ELISDAMKRVSAKVEFQDALVLLSESKISSIQ 176
+ + DA+K V + + + + +++ I
Sbjct: 152 VISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIP 193
Score = 34.0 bits (79), Expect = 0.18
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
G+S+ ++E + + DA+ R + + +VPGGG
Sbjct: 366 GASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 400
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 64.9 bits (159), Expect = 5e-11
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L S G +T D T+ I+L Q+ AK++ +VA ++EAGDGTTTA V+A
Sbjct: 51 MLVDSLGDIVVTNDCATILDKIDL----QHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGE 106
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDK 141
+ ++ E + + +P I +G LA E + L E++ V E + ++A S G K
Sbjct: 107 LLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITG-K 165
Query: 142 AVG-------ELISDAMKRV 154
+L +A+K+V
Sbjct: 166 NAESHKELLAKLAVEAVKQV 185
Score = 33.7 bits (78), Expect = 0.23
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
G +E ++E + + DA+ + +E+G ++P GG
Sbjct: 378 GGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGG 412
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 64.5 bits (158), Expect = 7e-11
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L S G IT DG T+ ++L Q+ AKL+ +A +EE DGT TA + +
Sbjct: 58 MLVDSLGDITITNDGATILDKMDL----QHPAAKLLVQIAKGQDEETADGTKTAVIFSGE 113
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDK 141
+ K+ + + K +P I G A E ++EL++ V+ + + ++A S + K
Sbjct: 114 LVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSS-K 172
Query: 142 AVG-------ELISDAMKRVS 155
AV +++ A+ +V+
Sbjct: 173 AVAGAREYIADIVVKAVTQVA 193
Score = 31.0 bits (71), Expect = 1.9
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
G E V+E + + DAL +++G + GGG
Sbjct: 385 GGLERLVDETERALRDALGTVADVIKDGRAIAGGG 419
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 64.1 bits (157), Expect = 8e-11
Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 18/156 (11%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
++ G I+ DG T+ K +++ + AK + D+A + + E GDGTT+ T+LA
Sbjct: 39 LIVDGRGKATISNDGATILKLLDV----VHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAE 94
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP------EEIAQVATISA 137
K+ + +G +P I R A + +KE++ V + + + A +
Sbjct: 95 FLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTAL 154
Query: 138 NGDKAVG-------ELISDAMKRVSAKVEFQDALVL 166
+ K + +++ DA+ + ++ + +
Sbjct: 155 SS-KLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIK 189
Score = 30.9 bits (71), Expect = 1.8
Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 52/162 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
G +E + E + + DA+ R A++ +V GGG + L + GK
Sbjct: 367 GGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDY----SRTIPGK- 421
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
++L + KAL
Sbjct: 422 ---------------------------QQLL---------------IGAYAKALEIIPRQ 439
Query: 747 IATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
+ NAG DA+ ++NK+ + G D + + +
Sbjct: 440 LCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEA 481
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 64.1 bits (157), Expect = 8e-11
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
IT DG T+ K +++ Q+ AK++ +V+ + E GDGTTTA VL+ + + E I
Sbjct: 11 ITNDGATILKEMDI----QHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIM 66
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDKAVG------- 144
KG + I G A E + L+ ++ ++ + ++A + G K
Sbjct: 67 KGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITG-KGAEAYKEKLS 125
Query: 145 ELISDAMKRVSAKVEFQDALVLLSESKI 172
L A++ + + E + +L KI
Sbjct: 126 ALTVKAVRSIVEEEEDGLKVNVLENIKI 153
Score = 32.1 bits (74), Expect = 0.73
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 52/162 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
G +E V+ + DAL+ +E+G +V GGG++ + + +L A G+
Sbjct: 329 GGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSE---VELSLRLSEY-ASTLKGR- 383
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
E+LA V +AL +
Sbjct: 384 ---------------------------EQLA---------------VSKFAEALEVIPVA 401
Query: 747 IATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
+A NAG+D ++ ++ + + G + E V+M +
Sbjct: 402 LAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWEN 443
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 64.1 bits (157), Expect = 1e-10
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L G K+TKDG + +++ Q+ A L+ VA ++ GDGTT+ ++
Sbjct: 38 MLVSGAGDIKLTKDGNVLLHEMQI----QHPTASLIAKVATAQDDITGDGTTSNVLIIGE 93
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPV-TTPEEIAQVATISANGDKA 142
+ K+ IS+G +P I G A E L+++ E + VA S K
Sbjct: 94 LLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRT-KV 152
Query: 143 VG-------ELISDAMKRV 154
E + D++ +
Sbjct: 153 HAELADVLTEAVVDSILAI 171
Score = 35.2 bits (82), Expect = 0.084
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
G ++ + + KD + D L A + A+++G +VPG G
Sbjct: 370 GPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAG 404
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 63.7 bits (156), Expect = 1e-10
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L G +T DGVT+ + + + ++ AK++ +VA +E GDGTTTA V+A
Sbjct: 47 MLVDDLGDVVVTNDGVTILREMSV----EHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGE 102
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDK 141
+ ++ E + + +P + +G A + + LK ++ V E + ++A S G K
Sbjct: 103 LLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITG-K 161
Query: 142 AVG-------ELISDAMKRV 154
E+I +A+ V
Sbjct: 162 GAEKAKEKLAEIIVEAVSAV 181
Score = 31.0 bits (71), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
G++E + E V DA+ +E+G IV GGG
Sbjct: 371 GTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGG 405
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 63.7 bits (156), Expect = 1e-10
Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
++ S I+ DG T+ K +++ + AK + D++ + E GDGTT+ T+LA
Sbjct: 52 LIVTSNQKTTISNDGATILKLLDV----VHPAAKTLVDISRAQDAEVGDGTTSVTILAGE 107
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP-----EEIAQVATISAN 138
+ KE + +G + I +G AV + EL+ +T+ E + + A + +
Sbjct: 108 LMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMS 167
Query: 139 GDKAVG-------ELISDAMKRVSAK 157
K + ++ DA+ +
Sbjct: 168 S-KLIHNNADFFVKMCVDAVLSLDRN 192
Score = 32.1 bits (74), Expect = 0.71
Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 52/162 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
G +E + E + + DA+ + A++ IV GGG + V L + GK
Sbjct: 380 GGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATE---MEVSKCLRDY-SKTIAGK- 434
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
+++ + KAL
Sbjct: 435 ---------------------------QQMI---------------INAFAKALEVIPRQ 452
Query: 747 IATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
+ NAG DA ++NK+ + G + K
Sbjct: 453 LCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAK 494
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 63.3 bits (155), Expect = 2e-10
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L S G IT DGVT+ K +++ ++ AK++ +V+ + GDGTTTA ++A
Sbjct: 49 MLVDSLGDIVITNDGVTILKEMDV----EHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGG 104
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDK 141
+ ++ I++ +P I G +A E K + E+S + + ++A S N K
Sbjct: 105 LLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNS-K 163
Query: 142 AVG-------ELISDAMKRVS 155
+ E+ +A+K V+
Sbjct: 164 SASVAKDKLAEISYEAVKSVA 184
Score = 31.4 bits (72), Expect = 1.4
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 52/162 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
G +E V+E + +TD+L+ +A+E+G GGG + +L + A + G+
Sbjct: 376 GETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATA---AEIAFRLRSY-AQKIGGR- 430
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
++LA +E A+ +
Sbjct: 431 ---------------------------QQLA---------------IEKFADAIEEIPRA 448
Query: 747 IATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
+A NAG+D ++ K+ + + G + E +M++
Sbjct: 449 LAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKN 490
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 62.9 bits (154), Expect = 2e-10
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+++ G IT DG T+ K +++ + A+++ +++ + EAGDGTT+ ++A +
Sbjct: 39 MIQDGKGDVTITNDGATILKQMQV----LHPAARMLVELSKAQDIEAGDGTTSVVIIAGS 94
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDK 141
+ + + KG +P I A+E L ++S+PV E + A S N K
Sbjct: 95 LLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNS-K 153
Query: 142 AVG-------ELISDAMKRV 154
V + DA+ +V
Sbjct: 154 VVSQYSSLLSPMSVDAVMKV 173
Score = 31.7 bits (73), Expect = 0.95
Identities = 36/272 (13%), Positives = 74/272 (27%), Gaps = 94/272 (34%)
Query: 521 KAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGS---VGEIVITKDDTLI 577
K D + ++ + G ++ A LGS E+ + LI
Sbjct: 300 KIMVVKDIEREDIEFICKTIGTKPVAH------VDQFTADMLGSAELAEEVSLNGSGKLI 353
Query: 578 LKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEK 637
+ + T + R GS+++ + E
Sbjct: 354 ------------KITGCASPGKTVTI----------VVR-----------GSNKLVIEEA 380
Query: 638 KDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQI 696
+ + DAL R V++ ++ GGG I + +L + +G
Sbjct: 381 ERSIHDALCVIRCLVKKRALIAGGGAPE---IELALRLTEY-SRTLSGM----------- 425
Query: 697 RDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDAS 756
E + A+ T+A NAG++
Sbjct: 426 -----------------ESYC---------------IRAFADAMEVIPSTLAENAGLNPI 453
Query: 757 VVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
V ++ + G + N++++
Sbjct: 454 STVTELRNRHAQGEKTTGINVRKGGISNILEE 485
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 63.2 bits (154), Expect = 2e-10
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L G +T DG + + I++ + AK + +++ +EE GDGTTT +LA
Sbjct: 47 MLLDPMGGLVLTNDGHAILREIDV----AHPAAKSMLELSRTQDEEVGDGTTTVIILAGE 102
Query: 84 IAKEGFEK-ISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGD 140
I + I K +P+ I + + A+ +K++SKPV + ++ S
Sbjct: 103 ILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGT- 161
Query: 141 KAVG-------ELISDAMKRV 154
K V EL DA+K V
Sbjct: 162 KYVIHWSEKMCELALDAVKTV 182
Score = 31.6 bits (72), Expect = 1.1
Identities = 39/294 (13%), Positives = 83/294 (28%), Gaps = 83/294 (28%)
Query: 521 KAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIV----------- 569
+K+ +A TG + +EDL+ +D+G+ +
Sbjct: 313 GCSVLRRVKKSDNNRIARVTGATIVNR------VEDLKESDVGTNCGLFKVEMIGDEYFS 366
Query: 570 ------ITKDDTLILKGKGKKEDIDRRADQI--------RDQIEATTSDYEREKLQERLA 615
+ + +K RR + R + +++
Sbjct: 367 FLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHH 426
Query: 616 RLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKL 674
+ + + G S+ +NE + DA+ R + + PGGG + L +
Sbjct: 427 HGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAE- 485
Query: 675 ETANADQATGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVE 734
A Q G ++ +
Sbjct: 486 ---KAKQLEGI----------------------------QQWP---------------YQ 499
Query: 735 IVKKALRQPCMTIATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
V A+ T+ NAG D +++++ + + G D + V+M+
Sbjct: 500 AVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSY 553
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 62.9 bits (154), Expect = 2e-10
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+++ S G I+ DG T+ K + + + A+++ +V+ + EAGDGTT+ +L A
Sbjct: 47 MIKTSRGEIIISNDGHTILKQMAI----LHPVARMLVEVSAAQDSEAGDGTTSVVILTGA 102
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDK 141
+ ++KG +P I A + L E+ V+ E++ + A+ S + K
Sbjct: 103 LLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSS-K 161
Query: 142 AVG-------ELISDAMKRV 154
V L D++ ++
Sbjct: 162 IVSQYSSFLAPLAVDSVLKI 181
Score = 31.7 bits (73), Expect = 1.1
Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 52/162 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
G++ + ++E + + DAL R V+E ++ GGG + L K A G
Sbjct: 381 GANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKE----ARSMEGV- 435
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
+ + AL T
Sbjct: 436 ---------------------------QAFI---------------WQEFASALEVIPTT 453
Query: 747 IATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
+A NAG+++ VV ++ G + N ++
Sbjct: 454 LAENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEE 495
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 62.5 bits (153), Expect = 3e-10
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
+T DG T+ K I + N AK++ D++ ++E GDGTT+ TVLA + +E I+
Sbjct: 50 VTNDGATILKNIGV----DNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 105
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELSKPVTTP-----EEIAQVATISANGDKAVG---- 144
K +P I G A + + L + + +++ +A + + K +
Sbjct: 106 KKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSS-KLLTHHKD 164
Query: 145 ---ELISDAMKRVSAKVEFQDALVL 166
+L +A+ R+ + V+
Sbjct: 165 HFTKLAVEAVLRLKGSGNLEAIHVI 189
Score = 31.3 bits (72), Expect = 1.4
Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 52/161 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
G+++ ++E + + DAL V++ V GGG + + + + A + GK
Sbjct: 364 GATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSE---MLMAHAVTQL-ASRTPGK- 418
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
E +A +E KALR
Sbjct: 419 ---------------------------EAVA---------------MESYAKALRMLPTI 436
Query: 747 IATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQ 783
IA NAG D++ +V ++ E G D +M
Sbjct: 437 IADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSV 477
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 62.2 bits (152), Expect = 3e-10
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
IL G IT DG T+ +EL N AKL+ ++ + ++E GDGTT VLA A
Sbjct: 73 ILISPDGEITITNDGATILSQMEL----DNEIAKLLVQLSKSQDDEIGDGTTGVVVLASA 128
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP------EEIAQVATISA 137
+ + E I KG +PI+I G A + + L+E ++ + + + A S
Sbjct: 129 LLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSL 188
Query: 138 NGDKAVG-------ELISDAMKRV 154
K V E+ +A+ V
Sbjct: 189 GS-KIVSKDHDRFAEMAVEAVINV 211
Score = 30.6 bits (70), Expect = 2.3
Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 53/163 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
GS+++ V+E + + D+L R V++ +V GGG A + + + AD+ G
Sbjct: 410 GSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEE----ADKQRGI- 464
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
++ A +AL MT
Sbjct: 465 ---------------------------DQYA---------------FRGFAQALDTIPMT 482
Query: 747 IATNAGVDASVVVNK-----VLESSGEMGYDAMNNEYVNMIQK 784
+A N+G+D ++ + E +G D + +M +
Sbjct: 483 LAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKEL 525
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 61.0 bits (149), Expect = 9e-10
Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
+T DG T+ K I L N AK++ +++ ++E GDGTT+ TVL+ + +E + I
Sbjct: 56 VTNDGATILKSIPL----DNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLID 111
Query: 94 KGA-NPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIA-----QVATISANGDKAVG--- 144
+ +P I G LA L + + + + + +A + + K +
Sbjct: 112 QSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSS-KILSQDK 170
Query: 145 ----ELISDAMKRVSAKVEFQDALVL 166
EL ++A+ R+ + ++
Sbjct: 171 DHFAELATNAILRLKGSTNLEHIQII 196
Score = 31.3 bits (72), Expect = 1.4
Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 52/162 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
G+++ ++E + + DAL+ +E V GGG A + +D A GK
Sbjct: 371 GATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTE----AQNIDGK- 425
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
+ LA VE +ALRQ
Sbjct: 426 ---------------------------KSLA---------------VEAFARALRQLPTI 443
Query: 747 IATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
+A NAG D+S +V+K+ G D N +M Q
Sbjct: 444 LADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQL 485
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 60.7 bits (148), Expect = 1e-09
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 16/136 (11%)
Query: 30 GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGF 89
G+ K+TKDG + +++ Q+ A L+ A +E GDGTTT L + ++
Sbjct: 51 GNIKLTKDGKVLLTEMQI----QSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAH 106
Query: 90 EKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP----EEIAQVATISANGDKAVG- 144
I +G +P I G +A + L E T E + QVA S K
Sbjct: 107 RFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLT-KVDAD 165
Query: 145 ------ELISDAMKRV 154
+++DA+ V
Sbjct: 166 LTEVLTPIVTDAVLSV 181
Score = 35.2 bits (82), Expect = 0.095
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
GS+ + + KD V D L A +++ I+PG G
Sbjct: 382 GSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAG 416
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 59.9 bits (146), Expect = 2e-09
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRN I+ G IT D T+ + +++ + K++ + GDGT +
Sbjct: 50 GRNKIIVNHLGKIIITNDAATMLRELDI----VHPAVKVLVMATEQQKIDMGDGTNLVMI 105
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT----PEEIAQVATI 135
LA + + IS G + +EI +G +A + L E+ T E+ ++
Sbjct: 106 LAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKP 165
Query: 136 SANGDKAVG------ELISDAMKRVSAKVE 159
+ K G EL+S+A+ V +
Sbjct: 166 VISS-KKYGSEDILSELVSEAVSHVLPVAQ 194
Score = 29.1 bits (66), Expect = 6.1
Identities = 19/148 (12%), Positives = 48/148 (32%), Gaps = 47/148 (31%)
Query: 521 KAPGFGDNRKATLQDLAVATGGIVFGDEASPV-KLEDLQATDLGSVGEIVITK---DDTL 576
K L+ L G A+P+ +L +LG V + + D
Sbjct: 317 GILVLKVPSKFELRRLCRVCG-------ATPLPRLGAPTPEELGLVETVKTMEIGGDRVT 369
Query: 577 ILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNE 636
+ K + + +R ++ + + G+++ +++
Sbjct: 370 VFKQEQGEI-----------------------------SRTSTII----LRGATQNNLDD 396
Query: 637 KKDRVTDALNATRAAVEEG---IVPGGG 661
+ + D + A + ++ ++PG G
Sbjct: 397 IERAIDDGVAAVKGLMKPSGGKLLPGAG 424
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 59.1 bits (144), Expect = 3e-09
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 15/159 (9%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L G +T DG T+ +++ Q+ K++ ++A + E GDGTT+ ++A
Sbjct: 52 MLVDDIGDFTVTNDGATILSLLDV----QHPAGKILVELAQQQDREIGDGTTSVVIIASE 107
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKE-LSKPVTT--PEEIAQVATISANGD 140
+ K E + +P I G +A+ + E LS V T E + +A S +
Sbjct: 108 LLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSS- 166
Query: 141 KAVG-------ELISDAMKRVSAKVEFQDALVLLSESKI 172
K +G ++ DA+ V + + + +
Sbjct: 167 KIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNV 205
Score = 30.6 bits (70), Expect = 2.3
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
G+++ ++E + + D+L+ + +E G +VPGGG
Sbjct: 389 GANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGG 423
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 59.1 bits (144), Expect = 3e-09
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 34 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 93
+T DG T+ +++ + AKL+ +++ + ++E GDGTT VLA A+ +E + +
Sbjct: 48 VTNDGATILSMMDV----DHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLD 103
Query: 94 KGANPIEIRRGVMLAVETIKTHLKELSKPVTTP----EEIAQVATISANGDKAVG----- 144
+G +PI I G A HL ++S V E + Q A + K V
Sbjct: 104 RGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGS-KVVNSCHRQ 162
Query: 145 --ELISDAMKRV 154
E+ +A+ V
Sbjct: 163 MAEIAVNAVLTV 174
Score = 30.6 bits (70), Expect = 2.4
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 53/163 (32%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGGTALLRCIAVLDKLETANADQATGKK 686
G +++ + E K + DAL R + + +V GGG A I+ + AD+
Sbjct: 367 GGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAE---ISCALAVSQE-ADKCPTL- 421
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMT 746
E+ A + AL M
Sbjct: 422 ---------------------------EQYA---------------MRAFADALEVIPMA 439
Query: 747 IATNAGVDASVVVNK-----VLESSGEMGYDAMNNEYVNMIQK 784
+A N+G++ + + V E + +G D ++ +M +
Sbjct: 440 LAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQ 482
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 57.9 bits (141), Expect = 7e-09
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 24 ILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 83
+L G IT DG T+ K +E+ ++ AK++ ++A+ ++E GDGTT+ ++A
Sbjct: 38 MLVDDIGDVTITNDGATILKLLEV----EHPAAKVLCELADLQDKEVGDGTTSVVIIAAE 93
Query: 84 IAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKE-LSKPVTTP--EEIAQVATISANGD 140
+ K E + + +P + G LA + ++ E L + + A S +
Sbjct: 94 LLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSS- 152
Query: 141 KAVG-------ELISDAMKRVSAKVEFQDALVLLSESKI 172
K +G L+ DA+ + ++ +
Sbjct: 153 KVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINV 191
Score = 30.6 bits (70), Expect = 2.3
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 628 GSSEVEVNEKKDRVTDALNATRAAVEEG-IVPGGG 661
G+++ +E + + DAL + +E +VPGGG
Sbjct: 373 GANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 407
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 57.9 bits (141), Expect = 8e-09
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G N ++ +T D T+ + +E+ Q+ AK++ ++ +E GDGT V
Sbjct: 35 GMNKMVINHLEKLFVTNDAATILRELEV----QHPAAKMIVMASHMQEQEVGDGTNFVLV 90
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKP----VTTPEEIAQVATI 135
A A+ + E + G + E+ G +A + L +L + +E++ +
Sbjct: 91 FAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHT 150
Query: 136 SANGDKAVG------ELISDAMKRVSAK 157
S K G +LI+ A +
Sbjct: 151 SVMS-KQYGNEVFLAKLIAQACVSIFPD 177
Score = 32.1 bits (74), Expect = 0.76
Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 42/144 (29%)
Query: 521 KAPGFGDNRKATLQDLAVATGGIVFGDEASPV-KLEDLQATDLGSVGEIVITK-DDTLIL 578
N K L+ L G A+ + +L ++G + +++ DT ++
Sbjct: 293 NIMLVRLNSKWDLRRLCKTVG-------ATALPRLNPPVLEEMGHCDSVYLSEVGDTQVV 345
Query: 579 KGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKK 638
K +KED + ++ + GS++ +++ +
Sbjct: 346 VFKHEKED-------------------------------GAISTIV-LRGSTDNLMDDIE 373
Query: 639 DRVTDALNATRAAVEEG-IVPGGG 661
V D +N + + +VPGGG
Sbjct: 374 RAVDDGVNTFKVLTRDKRLVPGGG 397
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 4e-07
Identities = 54/282 (19%), Positives = 87/282 (30%), Gaps = 120/282 (42%)
Query: 71 GDGTTTATVLARAIAKEGFEKISK---------G-----ANP------------IEIRRG 104
G TA +A + E F + G A P +E G
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 105 V---MLAV-----ETIKTHLKELSKPVTTPEEIAQVATIS-ANGDKA-VGELISDAMKRV 154
V ML++ E ++ ++ + + P QV IS NG K V V
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNS--HLPAG-KQVE-ISLVNGAKNLV----------V 379
Query: 155 SAKVEFQDALVL-LSESKISS--IQSIIPALELANSKRKP------LVILA--------- 196
S + L L L ++K S QS IP S+RK L + +
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-----SERKLKFSNRFLPVASPFHSHLLVP 434
Query: 197 ------EDVDGEAL----STLVMYRLP-------RVLR--SQNLTPLLRRAYAKD----- 232
+D+ + + ++P LR S +++ + +
Sbjct: 435 ASDLINKDLVKNNVSFNAKDI---QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 233 ----------VRFGP-EVRGL-ML-------QGVD-ILADAM 254
+ FGP GL +L GV I+A +
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 45.4 bits (107), Expect = 7e-05
Identities = 58/324 (17%), Positives = 99/324 (30%), Gaps = 130/324 (40%)
Query: 514 GLQVAAVKAPGFGDNRKATLQDL----AVATGGIVFGDEASPVKLEDLQATD-LG-SVGE 567
G Q G G DL A V+ + A D D G S+ +
Sbjct: 1625 GSQ-----EQGMG-------MDLYKTSKAAQD--VW-NRA------DNHFKDTYGFSILD 1663
Query: 568 IVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVG 627
IVI L + G+K +R IR+ +Y + + + K
Sbjct: 1664 IVINNPVNLTIHFGGEK---GKR---IRE-------NYSAMIFETIVDGKLKTEKIFK-- 1708
Query: 628 GSSEVEVNEKKDRVT-----DALNATR-----------AAVE----EGIVPG-----G-- 660
E+NE T L+AT+ AA E +G++P G
Sbjct: 1709 -----EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 661 -G--TALLRCIA-VLDKLETANADQATGKKEDID---RRADQIRDQIEATTSDYEREKLQ 713
G AL +A V+ +E+ ++ R ++ +
Sbjct: 1764 LGEYAALA-SLADVMS-IESL-----------VEVVFYRGMTMQVAVP------------ 1798
Query: 714 ERLARLASGVAVLKVGGSSVEIV--KKALRQPCMTIATNAGVDASVV--VNK-------V 762
R S ++ + V ++AL+ + G +V VN V
Sbjct: 1799 -RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG---WLVEIVNYNVENQQYV 1854
Query: 763 LESSGEMGYDAMNNEYVNMIQKVL 786
+G++ A ++ + VL
Sbjct: 1855 A--AGDL--RA-----LDTVTNVL 1869
Score = 42.0 bits (98), Expect = 8e-04
Identities = 67/347 (19%), Positives = 119/347 (34%), Gaps = 121/347 (34%)
Query: 44 GIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFE--KISKGANPIE- 100
G++L A + A D T GF I NP+
Sbjct: 1632 GMDLYKTS---------KAAQDVWNRA-DNHFKDT--------YGFSILDIVIN-NPVNL 1672
Query: 101 -----------IRRGVM-LAVETIKTHLKELSKPVTTPEEIAQVAT-ISANGDKAVGELI 147
IR + ETI K ++ + +EI + +T + +K G L
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDG-KLKTEKI--FKEINEHSTSYTFRSEK--GLL- 1726
Query: 148 SDAMKRVSAKVEF-QDALVLLSESKISSIQS--IIPA--------L-EL-ANSKRKPLVI 194
+ +F Q AL L+ ++ ++S +IPA L E A L
Sbjct: 1727 --------SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA------LAS 1772
Query: 195 LAEDVDGEALSTLVMYRLPRVLRSQNLTPLLRRAYAKDVRFGPEVRGLMLQGV---DILA 251
LA+ + E+L +V Y RG+ +Q D L
Sbjct: 1773 LADVMSIESLVEVVFY-----------------------------RGMTMQVAVPRDELG 1803
Query: 252 DAMYRLPRVLRSQNLTPLLRAKVEFQDALVLLSESKISSIQSIIPALELAN--SKRKPLV 309
+ Y + + P A Q+AL + E ++ + +E+ N + + V
Sbjct: 1804 RSNYGMIAI------NPGRVAASFSQEALQYVVE-RVGKRTGWL--VEIVNYNVENQQYV 1854
Query: 310 ILAEDVDGEALSTLV-----VGKEGVITVKDGKTLTDELEVIEAYIY 351
A D+ AL T+ + + + ++ K+L+ LE +E +++
Sbjct: 1855 A-AGDL--RALDTVTNVLNFIKLQKIDIIELQKSLS--LEEVEGHLF 1896
Score = 42.0 bits (98), Expect = 8e-04
Identities = 75/397 (18%), Positives = 127/397 (31%), Gaps = 113/397 (28%)
Query: 423 DGKTLTDELE-VIE-GMKFDRGYISPYFINTAKGAKVEFQDAL-VLLS--ESKI---SSI 474
+G DE E KF GY+S +F L + L+ E+ + I
Sbjct: 46 EGFAADDEPTTPAELVGKF-LGYVSSL---VEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 475 QSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQ 534
++ A +L LV L+ N + K P + A +
Sbjct: 102 HAL--AAKLLQENDTTLV---------KTKELIKNYITA---RIMAKRPFDKKSNSALFR 147
Query: 535 DLAVATGGI----VFG---------DEASPVKLEDLQATDLGSVGEIVITKDDTL--ILK 579
AV G +FG +E L DL T VG+++ +TL +++
Sbjct: 148 --AVGEGNAQLVAIFGGQGNTDDYFEE-----LRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 580 GKGKKEDIDRRADQIRDQIEATTS----DYEREKLQERLAR------------LASGVAV 623
E + + I + +E ++ DY L LA V
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDY--------LLSIPISCPLIGVIQLAHYVVT 252
Query: 624 LKVGGSSEVEVNEKKDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLET--ANADQ 681
K+ G + E+ L +G+V TA+ IA D E+ + +
Sbjct: 253 AKLLGFTPGELR-------SYLKGA-TGHSQGLV----TAV--AIAETDSWESFFVSVRK 298
Query: 682 A------TGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVA--VLKVGGSSV 733
A G +R + L++ L GV +L + +
Sbjct: 299 AITVLFFIG-----------VRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNLTQ 346
Query: 734 EIVKKALRQPCMTIATNAGVDASVV---VNKVLESSG 767
E V+ + + + V+ S+V N V+ SG
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--SG 381
Score = 40.4 bits (94), Expect = 0.003
Identities = 53/306 (17%), Positives = 96/306 (31%), Gaps = 96/306 (31%)
Query: 436 GMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILA 495
GM D Y T+K A+ + A ++ SI I+ + N L I
Sbjct: 1630 GMGMDL-----Y--KTSKAAQDVWNRADNHFKDTYGFSILDIV----INNPVN--LTIHF 1676
Query: 496 EDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVF-GDE------ 548
G+ + N + + G K +++ + F ++
Sbjct: 1677 GGEKGKRIR---ENYSAM---IFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSAT 1729
Query: 549 --ASP-------VKLEDLQATDL--------G-SVGEI--------VITKDDTL-ILKGK 581
P EDL++ L G S+GE V++ + + ++ +
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 582 GK------KEDIDRRADQ----IR-DQIEATTSDYEREKLQERLARLASGVAVLKVGGSS 630
G D R++ I ++ A+ S E LQ + R+ + G
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ---EALQYVVERVGK-----RTGWLV 1841
Query: 631 EVEVNEKKDRVTDALNATRAAVEEG--IVPGGGTALLRCIA-VLDKLETANAD----QAT 683
E+ VN N E V G L + VL+ ++ D Q +
Sbjct: 1842 EI-VN---------YNV------ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 684 GKKEDI 689
E++
Sbjct: 1886 LSLEEV 1891
Score = 29.6 bits (66), Expect = 4.9
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 692 RADQIRDQ--------IEATTSDYEREKLQERLAR----LASGVAVLKVGGSSVEIVKKA 739
A Q+++Q E +D E E + + ++S V KV G +++
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV-GQFDQVLNLC 87
Query: 740 LRQ 742
L +
Sbjct: 88 LTE 90
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.1 bits (78), Expect = 0.23
Identities = 42/278 (15%), Positives = 76/278 (27%), Gaps = 98/278 (35%)
Query: 547 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYE 606
+ +P K E +Q E+++ +D KE A+Q + Q +E
Sbjct: 913 NGYNPEKKEMIQ--------EVIVEEDLEPFE---ASKET----AEQFKHQHGDKVDIFE 957
Query: 607 REKLQERLARLASGVAVL---------KVGGSSEVEVN--------EKK-----DRVTD- 643
+ E +L G + V G ++ D +T
Sbjct: 958 IPETGEYSVKLLKGATLYIPKALRFDRLVAG--QIPTGWNAKTYGISDDIISQVDPITLF 1015
Query: 644 ALNATRAAVEE-GIVPG-----------GGTALLRCIAVLDKLETANADQATGKKEDIDR 691
L + A GI G + + L + +D
Sbjct: 1016 VLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALR----GMFKDRFKDEPV 1071
Query: 692 RADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVG--GSSVEIVKKALRQPCMTIAT 749
+ D + E+ + +++ V +L + G V A C T +
Sbjct: 1072 QNDIL---QESFINT------------MSAWVNMLLISSSGPIKTPV-GA----CAT-SV 1110
Query: 750 NA----------GVDASVVVNKVLESSGEMGYDAMNNE 777
+ G A + + G GYD E
Sbjct: 1111 ESVDIGVETILSG-KARICI------VG--GYDDFQEE 1139
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase,
glucose-6-phosphate, yeast, allosteric AC transferase;
HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A*
3nch_A 3naz_A 3o3c_A* 3rsz_A*
Length = 725
Score = 31.0 bits (69), Expect = 2.0
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 188 KRKPLVILAEDVDGEALSTLVMYRLPRVLRSQNLTPLLRRAYAKDVRFGPEVRGLML--- 244
KRKP IL ++ ++ L+ + + +R + F +
Sbjct: 280 KRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAG 339
Query: 245 ------QGVDILADAMYRLPRVLRSQNL 266
+G D+ +A+ RL L+
Sbjct: 340 RYEYKNKGADMFIEALARLNYRLKVSGS 367
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like
fold, filamin domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 113
Score = 29.0 bits (65), Expect = 2.2
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 315 VDGEALSTLVVGKEGVITV----KDGKTLTDELEVIEAYIYLCLKVGKEGVITVKDGKTL 370
+ GE L + T+ G+ + + ++ + K V+D K
Sbjct: 16 LQGEDLHRAREKQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDG 75
Query: 371 T 371
T
Sbjct: 76 T 76
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium
acetobutylicum}
Length = 517
Score = 30.3 bits (67), Expect = 2.6
Identities = 7/66 (10%), Positives = 16/66 (24%)
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
DG + +V+N+ + + + I D+ S +
Sbjct: 433 VTSNDGNKMDIIVMNKNYTDSINFNFNVSSNKNYTSGQVWGFDSNSSNITKRDDVSSISG 492
Query: 555 EDLQAT 560
Sbjct: 493 NKFTYK 498
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 29.8 bits (67), Expect = 3.8
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 132 VATISANGDKAVGE--LISDAMKRVSAKVEFQDALVLLSESKISSIQSIIPALELANSKR 189
AN A+G ++S+ V+ A +LL+ ++ + + A+ N +
Sbjct: 275 HQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVK 334
Query: 190 KPLVI 194
+P+V
Sbjct: 335 RPIVF 339
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.8
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 23/50 (46%)
Query: 708 ERE---KLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVD 754
E++ KLQ L A A P + I A ++
Sbjct: 18 EKQALKKLQASLKLYADDSA------------------PALAI--KATME 47
Score = 28.8 bits (63), Expect = 4.8
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 26/52 (50%)
Query: 606 ERE---KLQERLARLASGVA-VLKVGGSSEVEVNEKKDRVTDALNATRAAVE 653
E++ KLQ L A A L A+ AT +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-------------------AIKAT---ME 47
>3tew_A Protective antigen; protein transport, toxin; HET: MXE; 1.45A
{Bacillus anthracis} PDB: 3tex_A 3tey_A 3q8b_A 3q8a_A
1t6b_X 1acc_A 3q8e_A 3q8c_A 3tez_A 3mhz_A* 3q8f_A*
3kwv_A 3hvd_A 1tzo_A 1tzn_A 3etb_J 3ino_A
Length = 715
Score = 29.5 bits (65), Expect = 4.9
Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 15/200 (7%)
Query: 11 GSPKITKDDGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEA 70
S + D ++ E++W + + A+ + ++ N G + +V T+
Sbjct: 308 NSSTVAIDHSLSLAGERTWAE-TMGLNTADTAR-LNANIRYVNTGTAPIYNVLPTTSLVL 365
Query: 71 GDGTTTATVLARAIAK-----EGFEKISKGANPIEIRRGVMLAVETI---KTHLKELSKP 122
G T AT+ A+ SK PI + + I EL K
Sbjct: 366 GKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKT 425
Query: 123 VTTPEEIAQVATISANGDKAVGELISDAMKR---VSAKVEFQDALVLLSESKISSIQSII 179
+ QV A + G + D V +++ A ++ + ++ ++ I
Sbjct: 426 KQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRI 485
Query: 180 PALELANS--KRKPLVILAE 197
A+ ++ KP + L E
Sbjct: 486 AAVNPSDPLETTKPDMTLKE 505
>4dkc_A Interleukin-34, IL-34; dimeric four-helix bundle cytokine,
activating CSF-1R, CSF-1 receptor, glycosylation,
cytokine; HET: NAG BMA; 1.85A {Homo sapiens} PDB:
4dke_A* 4dkf_A* 4dkd_A* 4exp_A* 4exn_A*
Length = 190
Score = 28.6 bits (63), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 260 VLRSQNLTPLLRAKV---EFQDALVLLSESKISSIQSIIP 296
V R N+T L RA+V E + VL+S S S+Q ++
Sbjct: 54 VFRIANVTRLQRAQVSERELRYLWVLVSLSATESVQDVLL 93
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle,
cell division, DNA damage, DNA recombination, DNA
repair, DNA replication; HET: AMP; 1.8A {Pyrococcus
furiosus} PDB: 3rr5_A*
Length = 561
Score = 29.3 bits (66), Expect = 5.5
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 566 GEIVITKDDTLIL------KGKGKKEDIDRRADQIR------DQIEATTSDYEREKLQER 613
GE+V ++ L + +K +I+ ++I D + K +R
Sbjct: 298 GELVAIGENGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDR 357
Query: 614 LARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAAVEEGIV 657
L + + +E + +K + EG++
Sbjct: 358 RRTLEEIIKQNEKIKVAENLITKKVEEAEAFYKRALEMGHEGLM 401
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu
genomics, protein structure initiative, midwest center
for structural genomics; HET: GOL; 2.00A {Rhodococcus
jostii}
Length = 150
Score = 28.1 bits (63), Expect = 6.0
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 579 KGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASG 620
+G+ ++D R D + D ++++ L +A
Sbjct: 103 EGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRDTLQSIAFP 144
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 6.6
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 590 RADQIRDQIEATTSDYEREKLQERLARLASGVAV----LKVGGSSEVE-----VNEKKDR 640
+AD++ + E+ RE+ ++RL L + V + ++E +E+ ++
Sbjct: 76 QADRLTQEPESIRK--WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 641 VTDALNATRAAVEE 654
R A +
Sbjct: 134 ---NKINNRIADKA 144
Score = 28.2 bits (62), Expect = 7.9
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 668 IAVLDKLETANADQATGK-KEDIDRRADQIRDQIE---ATTSDYEREKLQER 715
+ LD + K K+D++ + +Q+E ++ Q+
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta
structure, metal binding protein; HET: ATP; 1.60A
{Azotobacter vinelandii}
Length = 276
Score = 28.8 bits (64), Expect = 6.7
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 616 RLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAAVEEGIVPGGGT 662
RL + V+K+GG + + + L I+ G G
Sbjct: 36 RLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGV 82
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 29.2 bits (66), Expect = 7.7
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 583 KKEDIDRRADQIRDQIEATTSDYEREKLQERL 614
K D+++ +Q+R+++ T S+ +R+KL +R+
Sbjct: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRI 221
Score = 29.2 bits (66), Expect = 7.7
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 685 KKEDIDRRADQIRDQIEATTSDYEREKLQERL 716
K D+++ +Q+R+++ T S+ +R+KL +R+
Sbjct: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRI 221
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 28.4 bits (64), Expect = 8.9
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 549 ASPVKLEDLQATDLGSVGEIVITKDDTLILKGKGK-----KEDIDRRADQIRDQIEAT-- 601
+L+ L+A LG G + T +KG + + + I+ +EA
Sbjct: 13 RDLEELKALKARYLGKKGLL------TQEMKGLSALPLEERRKRGQELNAIKAALEAALE 66
Query: 602 --TSDYEREKLQERLAR 616
E L+E L R
Sbjct: 67 AREKALEEAALKEALER 83
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 28.4 bits (64), Expect = 9.6
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 232 DVRFGPE-VRGLMLQGVDIL 250
DV F PE VR +G ++
Sbjct: 167 DVEF-PEMVRAAAARGAQLV 185
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, blood
clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Length = 464
Score = 28.4 bits (63), Expect = 9.7
Identities = 13/110 (11%), Positives = 36/110 (32%)
Query: 597 QIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDALNATRAAVEEGI 656
Q+ A + + ++ + + L + V + + A+ A G
Sbjct: 338 QLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAEMAAAIQEGLDAQAAGD 397
Query: 657 VPGGGTALLRCIAVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSD 706
+ L R + + + + + K ++D ++R + + D
Sbjct: 398 LDTATARLGRAMDLAVESGHEDTVKMLRKVTEVDPATSKVRAKAKVDKGD 447
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 27.2 bits (60), Expect = 9.8
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 564 SVGEIVITKD-DTLILKGKGKKEDIDRRADQIRDQIEATTSDYE--REKLQERLARLASG 620
+VG +++ D + + K K E ++ R + + Q + + ++Q L +G
Sbjct: 58 TVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPPTAG 117
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 28.4 bits (63), Expect = 10.0
Identities = 33/206 (16%), Positives = 73/206 (35%), Gaps = 31/206 (15%)
Query: 183 ELANSKRKPLVILAEDVDGEALSTLVMYRLPR--VLRSQN------LTPLLRRAYAKDVR 234
L +S + + I +A+S+L+ ++ R V+ ++ LT + K
Sbjct: 120 YLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI 179
Query: 235 FGPEVRGLMLQGVDILADAMYRLPRVLRSQNLTPLLRAKVEFQDALVLLSESKISSI--- 291
M + ++ L Y ++R+ TP+ AL + + ++S++
Sbjct: 180 TEFPKPEFMSKSLEELQIGTYANIAMVRTT--TPVY-------VALGIFVQHRVSALPVV 230
Query: 292 ------QSIIPALELANSKRKPLVILAEDVDGEALSTLVVGKEGVITVKDGKTLTDELEV 345
I ++ N + + +AL EGV+ +TL +
Sbjct: 231 DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINR 290
Query: 346 IEAYIYLCLKV----GK-EGVITVKD 366
+ L V +G++++ D
Sbjct: 291 LVEAEVHRLVVVDEHDVVKGIVSLSD 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.355
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,896,849
Number of extensions: 791028
Number of successful extensions: 1974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1940
Number of HSP's successfully gapped: 178
Length of query: 788
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 687
Effective length of database: 3,881,772
Effective search space: 2666777364
Effective search space used: 2666777364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.7 bits)