RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14622
(788 letters)
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId:
562]}
Length = 193
Score = 242 bits (619), Expect = 5e-76
Identities = 102/192 (53%), Positives = 132/192 (68%), Gaps = 1/192 (0%)
Query: 430 ELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRK 489
EGM+FDRGY+SPYFIN + VE + +LL++ KIS+I+ ++P LE K
Sbjct: 3 VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62
Query: 490 PLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEA 549
PL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V +E
Sbjct: 63 PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122
Query: 550 SPVKLEDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREK 609
++LE DLG +VI KD T I+ G G++ I R QIR QIE TSDY+REK
Sbjct: 123 G-MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREK 181
Query: 610 LQERLARLASGV 621
LQER+A+LA GV
Sbjct: 182 LQERVAKLAGGV 193
Score = 70.6 bits (173), Expect = 1e-14
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 157 KVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVL 216
VE + +LL++ KIS+I+ ++P LE KPL+I+AEDV+GEAL+TLV+ + ++
Sbjct: 29 AVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIV 88
Query: 217 RSQNLTP 223
+ +
Sbjct: 89 KVAAVKA 95
Score = 69.8 bits (171), Expect = 3e-14
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 669 AVLDKLETANADQATGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGV 723
V++K T D G++ I R QIR QIE TSDY+REKLQER+A+LA GV
Sbjct: 140 VVINKDTTTIIDGV-GEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGV 193
Score = 68.3 bits (167), Expect = 1e-13
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
VE + +LL++ KIS+I+ ++P LE KPL+I+AEDV+GEAL+TLVV
Sbjct: 27 TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNT 83
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 176
Score = 235 bits (601), Expect = 1e-73
Identities = 98/177 (55%), Positives = 131/177 (74%), Gaps = 1/177 (0%)
Query: 435 EGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVIL 494
EGM+FDRGY+SPYF+ A E +DA +LL E K+SS+Q ++P LE +KPL+I+
Sbjct: 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIV 60
Query: 495 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 554
AEDV+GEAL+TLVVN+L+ GL++AAVKAPGFGD RKA LQD+A+ TGG V ++ +KL
Sbjct: 61 AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLG-MKL 119
Query: 555 EDLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQ 611
E++ LG ++ I KD+T I+ G G+K +I+ R QIR QIE TTSDY+REKLQ
Sbjct: 120 ENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQ 176
Score = 72.4 bits (178), Expect = 2e-15
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK-EG 329
+ E +DA +LL E K+SS+Q ++P LE +KPL+I+AEDV+GEAL+TLVV K G
Sbjct: 20 KMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRG 79
Query: 330 VITV 333
+ +
Sbjct: 80 GLKI 83
Score = 70.5 bits (173), Expect = 1e-14
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 157 KVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRL 212
E +DA +LL E K+SS+Q ++P LE +KPL+I+AEDV+GEAL+TLV+ +L
Sbjct: 22 IAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKL 77
Score = 50.1 bits (120), Expect = 1e-07
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 681 QATGKKEDIDRRADQIRDQIEATTSDYEREKLQ 713
G+K +I+ R QIR QIE TTSDY+REKLQ
Sbjct: 144 DGAGEKAEIEARVSQIRQQIEETTSDYDREKLQ 176
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 231 bits (591), Expect = 4e-72
Identities = 92/185 (49%), Positives = 129/185 (69%), Gaps = 1/185 (0%)
Query: 436 GMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILA 495
GM+FD+GYIS YF+ + + +D +LL SK+S+++ ++P LE KPL+I+A
Sbjct: 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60
Query: 496 EDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 555
EDV+GEALSTLVVN+++ + AVKAPGFGD RKA LQD+A+ TGG V +E + LE
Sbjct: 61 EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVG-LTLE 119
Query: 556 DLQATDLGSVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLA 615
+ + LG ++V+TKD+T I++G G + I R QIR +IE + SDY+REKLQERLA
Sbjct: 120 NADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLA 179
Query: 616 RLASG 620
+LA G
Sbjct: 180 KLAGG 184
Score = 71.0 bits (174), Expect = 8e-15
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 157 KVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVL 216
+ +D +LL SK+S+++ ++P LE KPL+I+AEDV+GEALSTLV+ ++
Sbjct: 21 EAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTF 80
Query: 217 RSQNLTP 223
+S +
Sbjct: 81 KSVAVKA 87
Score = 70.2 bits (172), Expect = 2e-14
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK 327
R + +D +LL SK+S+++ ++P LE KPL+I+AEDV+GEALSTLVV K
Sbjct: 19 RQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNK 75
Score = 63.3 bits (154), Expect = 4e-12
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 687 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASG 722
+ I R QIR +IE + SDY+REKLQERLA+LA G
Sbjct: 149 DAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGG 184
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId:
274]}
Length = 145
Score = 188 bits (478), Expect = 1e-56
Identities = 72/146 (49%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 436 GMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILA 495
G +FD+GYISPYF+ + + +DA +L+ E K+S+++ ++P LE KPL+I+A
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 496 EDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 555
EDV+GEAL+TLVVN+L+ L VAAVKAPGFGD RK L+D+A TGG V +E KLE
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELG-FKLE 119
Query: 556 DLQATDLGSVGEIVITKDDTLILKGK 581
+ + LG + ITKD+T I+ GK
Sbjct: 120 NATLSMLGRAERVRITKDETTIVGGK 145
Score = 79.4 bits (196), Expect = 4e-18
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 271 RAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGK-EG 329
+ +DA +L+ E K+S+++ ++P LE KPL+I+AEDV+GEAL+TLVV K G
Sbjct: 19 TMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRG 78
Query: 330 VITV 333
++V
Sbjct: 79 TLSV 82
Score = 78.2 bits (193), Expect = 1e-17
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 157 KVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVMYRLPRVL 216
+ +DA +L+ E K+S+++ ++P LE KPL+I+AEDV+GEAL+TLV+ +L L
Sbjct: 21 EAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL 80
Query: 217 RSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAMY 255
+ FG R ML+ + +
Sbjct: 81 SVAAVKAP---------GFGDR-RKEMLKDIAAVTGGTV 109
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 97.9 bits (243), Expect = 2e-23
Identities = 62/147 (42%), Positives = 101/147 (68%), Gaps = 8/147 (5%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV++++S+G+P+ITKDGV+VAK IEL DKF+N+GA++V++VA+ TN+EAGDGTTTATV
Sbjct: 34 GRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQV------- 132
LA+AI +EG + ++ G NP++++RG+ +A + +K ++ + +A V
Sbjct: 94 LAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLE 153
Query: 133 ATISANGDKAVG-ELISDAMKRVSAKV 158
AN D+ G +I A++ ++
Sbjct: 154 GLSGANSDQDAGIAIIRRALEAPMRQI 180
Score = 78.3 bits (192), Expect = 1e-16
Identities = 62/276 (22%), Positives = 101/276 (36%), Gaps = 68/276 (24%)
Query: 519 AVKAPGFGDN-RKATLQDLAVATGGIV--FGDEASPVKLEDLQATDLGSVGEIVITKDDT 575
A K F + R L+ + + + G + V ++ S G ITKD
Sbjct: 1 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDK-------SFGAPRITKDGV 53
Query: 576 LILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVG------GS 629
+ K + + Q+ ++ + T+D E A+++ G G
Sbjct: 54 SVAKEIELSDKFENMGAQMVREVASRTND---EAGDGTTTATVLAQAIVREGLKAVAAGM 110
Query: 630 SEVEVNEKKDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDI 689
+ +++ D T + + GIV GGG AL++ VL+ L AN+DQ G
Sbjct: 111 NPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGANSDQDAG----- 165
Query: 690 DRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIAT 749
+ I+++AL P IA
Sbjct: 166 -------------------------------------------IAIIRRALEAPMRQIAE 182
Query: 750 NAGVDASVVVNKVLESSGE-MGYDAMNNEYVNMIQK 784
NAGVD +VV KV ESS + G++A EY +M +
Sbjct: 183 NAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKF 218
Score = 57.9 bits (139), Expect = 9e-10
Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 23/259 (8%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAMYR-LPRVLRSQNLTPLLRAKVEFQDALVLLSESKI 288
AK+V+F + R ML+GV+ILADA+ L R+ + A +D + + E ++
Sbjct: 2 AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 61
Query: 289 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGKEGVITVKDGKTLTDELEVIEA 348
S + A + + + + + +EG+ V G D I+
Sbjct: 62 SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 121
Query: 349 YIYLCLKVGKEGVITVKDGK--TLTDELEVIEGMKFDRGYISPYFIIELKLVLEYYIQTY 406
++ K + G L +V+EG+ + ++
Sbjct: 122 ATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGANSDQ----DAGIAIIRRALEAPM 177
Query: 407 IYLCLKVGKEGVITVKDGKTLTDELEVIE------GMKFDRGYISPYFINTAKGAKVEFQ 460
+ G +G + + +D+ G F G I P + + +
Sbjct: 178 RQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKV-----VRTALE 232
Query: 461 DA-----LVLLSESKISSI 474
DA L++ +E+ I+
Sbjct: 233 DAASVAGLLITTEAMIAEK 251
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 91.0 bits (225), Expect = 1e-21
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 49 DKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA 108
D ++ IGA+LV++VA T++ AGDGTTTATVLA+A+ +EG ++ GANP+ ++RG+ A
Sbjct: 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKA 60
Query: 109 VETIKTHLKELSKPVTTPEEIAQVATISANG 139
VE + L + +K V A + +
Sbjct: 61 VEKVTETLLKGAKIVAGGGVTLLQAAPTLDE 91
Score = 45.6 bits (107), Expect = 5e-06
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 732 SVEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGEMGYDAMNNEYVNMIQK 784
IVK AL P IA N+G++ VV KV G +A Y +++
Sbjct: 101 GANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGLNAQTGVYEDLLAA 153
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 91.0 bits (225), Expect = 5e-21
Identities = 63/143 (44%), Positives = 93/143 (65%), Gaps = 8/143 (5%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+L++S+G+P ITKDGV+VA+ IEL+DKF+N+GA++V++VA+ N+ AGDGTTTATV
Sbjct: 34 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATV 93
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEI-------AQV 132
LA+AI EG + ++ G NP++++RG+ AV LK LS V +
Sbjct: 94 LAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVGVVAGGGVALIRVASKLA 153
Query: 133 ATISANGDKAVG-ELISDAMKRV 154
N D+ VG ++ AM+
Sbjct: 154 DLRGQNADQNVGIKVALRAMEAP 176
Score = 74.4 bits (182), Expect = 2e-15
Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 8/252 (3%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAMYR-LPRVLRSQNLTPLLRAKVEFQDALVLLSESKI 288
AKDV+FG + ML+GV++LADA+ L R+ L A +D + + E ++
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 289 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGKEGVITVKDGKTLTDELEVIEA 348
+ A + K + + + EG+ V G D I+
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 349 YIYLCLKVGKEGVITVKDGKTLTDE-----LEVIEGMKFDRGYISPYFIIELKLVLEYYI 403
+ + ++ K + V G + L + G D+ + ++ L +
Sbjct: 122 AVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIV 181
Query: 404 QTYIYLCLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDAL 463
+ DG + G D G + P + + L
Sbjct: 182 LNCGE--EPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 239
Query: 464 VLLSESKISSIQ 475
++ +E ++ +
Sbjct: 240 MITTECMVTDLP 251
Score = 64.8 bits (157), Expect = 4e-12
Identities = 55/273 (20%), Positives = 91/273 (33%), Gaps = 63/273 (23%)
Query: 519 AVKAPGFGDN-RKATLQDLAVATGGIV--FGDEASPVKLEDLQATDLGSVGEIVITKDDT 575
A K FG++ L+ + V + G + V L+ G ITKD
Sbjct: 1 AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF-------GAPTITKDGV 53
Query: 576 LILKGKGKKEDIDRRADQIRDQIEATTSD----YEREKLQERLARLASGVAVLKVGGSSE 631
+ + ++ + Q+ ++ + +D A + G+ + G +
Sbjct: 54 SVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVA-AGMNP 112
Query: 632 VEVNEKKDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQATGKKEDIDR 691
+++ D+ A+ G+V GGG AL+R + L L NADQ G
Sbjct: 113 MDLKRGIDKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQNADQNVG------- 165
Query: 692 RADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNA 751
+++ +A+ P I N
Sbjct: 166 -----------------------------------------IKVALRAMEAPLRQIVLNC 184
Query: 752 GVDASVVVNKVLESSGEMGYDAMNNEYVNMIQK 784
G + SVV N V G GY+A EY NMI
Sbjct: 185 GEEPSVVANTVKGGDGNYGYNAATEEYGNMIDM 217
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 88.2 bits (218), Expect = 4e-20
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G IT DGVT+ K +++ ++ AK++ +V+ + GDGTTTA +
Sbjct: 26 GMDKMLVDSLGDIVITNDGVTILKEMDV----EHPAAKMMVEVSKTQDSFVGDGTTTAVI 81
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPE----EIAQVATI 135
+A + ++ I++ +P I G +A E K + E+S + A++A
Sbjct: 82 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFR 141
Query: 136 SANGDKAVGELISDAMKRVSAKVE 159
+ + +G A+++ + +E
Sbjct: 142 LRSYAQKIGGRQQLAIEKFADAIE 165
Score = 37.8 bits (87), Expect = 0.003
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 733 VEIVKKALRQPCMTIATNAGVDASVVVNKVLESSGE----MGYDAMNNEYVNMIQK 784
+E A+ + +A NAG+D ++ K+ + G + E +M++
Sbjct: 157 IEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKN 212
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 82.9 bits (204), Expect = 3e-18
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G +T D T+ I+L Q+ AK++ +VA ++EAGDGTTTA V
Sbjct: 39 GMDKMLVDSLGDIVVTNDCATILDKIDL----QHPAAKMMVEVAKTQDKEAGDGTTTAVV 94
Query: 80 LARAIAKEGFEKISKGANPIEIR----RGVMLAVETIKTHLKELSKPVTTPEEIAQVATI 135
+A + ++ E + + +P I A E + P EI +
Sbjct: 95 IAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRL 154
Query: 136 SANGDKAVGELISDAMKRVSAKVEF 160
K VG + A++ + ++
Sbjct: 155 DEY-AKQVGGKEALAIENFADALKI 178
Score = 45.2 bits (106), Expect = 1e-05
Identities = 31/257 (12%), Positives = 71/257 (27%), Gaps = 22/257 (8%)
Query: 231 KDVRFGPEVRGLMLQGVDILADAMYRLPRVLRSQNLTPLLRAKV-EFQDALVLLSESKIS 289
G + + L + I+A+ + L P K+ ++++ +
Sbjct: 8 TQRYVGRDAQRLNILAARIIAETV--------RTTLGPKGMDKMLVDSLGDIVVTNDCAT 59
Query: 290 SIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGKEGVITVKDGKTLTDELEVIEAY 349
+ I A + ++ + +V+ E + ++ +I
Sbjct: 60 ILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKG 119
Query: 350 IYLC-------LKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFIIELKLVLEYY 402
L L + G + ++ G I L+
Sbjct: 120 YALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKII 179
Query: 403 IQTYIYLCLKVGK---EGVITVKDGKTLTDELEVIEGMKFD---RGYISPYFINTAKGAK 456
+T VI+ + L ++V EG D +G I P +
Sbjct: 180 PKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 239
Query: 457 VEFQDALVLLSESKISS 473
++L + I++
Sbjct: 240 ASEAAIMILRIDDVIAA 256
Score = 29.8 bits (66), Expect = 1.1
Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 51/225 (22%)
Query: 564 SVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAV 623
S+G+IV+T D IL + + ++ + D + L +
Sbjct: 47 SLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEEL 106
Query: 624 LKVGGSSEVEVNEKKDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQAT 683
L + A ++P GG + + +
Sbjct: 107 LDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGG-----APEIELAIRLDEYAKQV 161
Query: 684 GKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQP 743
G KE + ++E AL+
Sbjct: 162 GGKEAL------------------------------------------AIENFADALKII 179
Query: 744 CMTIATNAGVDASVVVNKVLES----SGEMGYDAMNNEYVNMIQK 784
T+A NAG+D ++ KV+ +G D + +M++K
Sbjct: 180 PKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEK 224
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 82.5 bits (203), Expect = 4e-18
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
G + +L S G I+ DG T+ K +++ ++ AK++ +V+ + GDGTTTA V
Sbjct: 30 GMDKMLVDSIGDIIISNDGATILKEMDV----EHPTAKMIVEVSKAQDTAVGDGTTTAVV 85
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKE------LSKPVTTPEEIAQVA 133
L+ + K+ + +G +P I G LAV + + E L E+A
Sbjct: 86 LSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRL 145
Query: 134 TISANGDKAVGELISDAMKRVSAKVEFQDA 163
AN +L +A + + A
Sbjct: 146 AKYANSVGGREQLAIEAFAKALEIIPRTLA 175
Score = 43.2 bits (101), Expect = 5e-05
Identities = 44/225 (19%), Positives = 70/225 (31%), Gaps = 51/225 (22%)
Query: 564 SVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAV 623
S+G+I+I+ D ILK + + ++ + D + L +
Sbjct: 38 SIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETL 97
Query: 624 LKVGGSSEVEVNEKKDRVTDALNATRAAVEEGIVPGGGTALLRCIAVLDKLETANADQAT 683
L G V N + V +A E+ + GGG L K A+
Sbjct: 98 LDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKY----ANSVG 153
Query: 684 GKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQP 743
G+ E+LA +E KAL
Sbjct: 154 GR----------------------------EQLA---------------IEAFAKALEII 170
Query: 744 CMTIATNAGVDASVVVNKV----LESSGEMGYDAMNNEYVNMIQK 784
T+A NAG+D + K+ + +G D NN +M K
Sbjct: 171 PRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAK 215
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 80.0 bits (196), Expect = 3e-17
Identities = 65/146 (44%), Positives = 95/146 (65%), Gaps = 11/146 (7%)
Query: 20 GRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATV 79
GRNV+LE+ +GSP ITKDGVTVAK +EL+D +NIGA+L+++VA+ TN+ AGDGTTTATV
Sbjct: 33 GRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATV 92
Query: 80 LARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT----------PEEI 129
LA+AI +EG + ++ GANP+ ++RG+ AVE +K L+ PV
Sbjct: 93 LAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISA 152
Query: 130 AQVATISANGDKAVG-ELISDAMKRV 154
+ GD+A G +++ A++
Sbjct: 153 VEELIKKLEGDEATGAKIVRRALEEP 178
Score = 61.9 bits (149), Expect = 4e-11
Identities = 35/268 (13%), Positives = 79/268 (29%), Gaps = 37/268 (13%)
Query: 230 AKDVRFGPEVRGLMLQGVDILADAMYRLPRVLRSQNLTPLLRAKV-EFQDALVLLSESKI 288
AK + F R + +GV+ +A+A+ L P R V E + +++ +
Sbjct: 1 AKILVFDEAARRALERGVNAVANAV--------KVTLGPRGRNVVLEKKFGSPTITKDGV 52
Query: 289 SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVGKEGVITVKDGKTLTDELEVIEA 348
+ + + L N + L +A + A G + + E A
Sbjct: 53 TVAKEVELEDHLENIGAQLLKEVASKTNDVA------GDGTTTATVLAQAIVREGLKNVA 106
Query: 349 YIYLCLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFIIELKLVL-------EY 401
L + + V+ L + G+ G I ++ ++
Sbjct: 107 AGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEAT 166
Query: 402 YIQTYIYLCLKVGKEGVITVKDGKTLTDE------------LEVIEGMKFD---RGYISP 446
+ + ++ ++ + G D G + P
Sbjct: 167 GAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDP 226
Query: 447 YFINTAKGAKVEFQDALVLLSESKISSI 474
+ + AL+L +E+ ++
Sbjct: 227 AKVTRSALQNAASIGALILTTEAVVAEK 254
Score = 43.4 bits (101), Expect = 5e-05
Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 66/275 (24%)
Query: 521 KAPGFGDN-RKATLQDLAVATGGIV--FGDEASPVKLEDLQATDLGSVGEIVITKDDTLI 577
K F + R+A + + + G V LE G ITKD +
Sbjct: 2 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEK-------KFGSPTITKDGVTV 54
Query: 578 LKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERL----ARLASGVAVLKVGGSSEVE 633
K ++ ++ Q+ ++ + T+D + A + G+ + G +
Sbjct: 55 AKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLAL 114
Query: 634 VNEKKDRVTDALNATRAAVE-EGIVPGGGTALLRCIAVLDKLETA-NADQATGKKEDIDR 691
+ V A+ +A GIVPGGG LLR I+ +++L D+ATG
Sbjct: 115 KRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATG------- 167
Query: 692 RADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSVEIVKKALRQPCMTIATNA 751
+IV++AL +P IA NA
Sbjct: 168 -----------------------------------------AKIVRRALEEPARQIAENA 186
Query: 752 GVDASVVVNKVLES--SGEMGYDAMNNEYVNMIQK 784
G + SV+V ++L + G++A E+V+M++
Sbjct: 187 GYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEA 221
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 89
Score = 60.9 bits (148), Expect = 3e-12
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 410 CLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKG-AKVEFQDALVLLSE 468
KVG EGVITV++ T +LE+ E G + + K + ++A + E
Sbjct: 29 MDKVGNEGVITVEESNTFGLQLELTEVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEE 88
Score = 56.3 bits (136), Expect = 1e-10
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 353 CLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFIIELKLVLE 400
KVG EGVITV++ T +LE+ E G + + E K +E
Sbjct: 29 MDKVGNEGVITVEESNTFGLQLELTEVAVIKAGAATEVELKERKHRIE 76
Score = 44.7 bits (106), Expect = 1e-06
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 123 VTTPEEIAQVATISANGDKAVGELISDAMKRVS 155
V T E+IA A ISA GD+++G+LI++AM +V
Sbjct: 2 VETKEQIAATAAISA-GDQSIGDLIAEAMDKVG 33
Score = 40.5 bits (95), Expect = 4e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 621 VAVLKVGGSSEVEVNEKKDRVTDALNATRAAVEEG 655
VAV+K G ++EVE+ E+K R+ DA+ +AAVEEG
Sbjct: 55 VAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG 89
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 97
Score = 57.7 bits (139), Expect = 5e-11
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 561 DLGSVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASG 620
++ VG I + + G+ E + R ++ +E ++ ER+A+LA G
Sbjct: 7 EVAQVGTISANGESFI---GQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLAGG 63
Query: 621 VAVLKVGGSSEVEVNEKKDRVTDALNATRAAVEE 654
VAV++VGG +E+EV E+KDRV DALNATRAAV+E
Sbjct: 64 VAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE 97
Score = 55.4 bits (133), Expect = 3e-10
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 122 PVTTPEEIAQVATISANGDKAVGELISDAMKRV 154
PV E+AQV TISANG+ +G+ I++AM+RV
Sbjct: 1 PVNDSSEVAQVGTISANGESFIGQQIAEAMQRV 33
Score = 34.6 bits (79), Expect = 0.006
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 410 CLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINT-----AKGAKVEFQDAL 463
+VG EGVITV++ K + E+EV+E + G ++ + K K DAL
Sbjct: 30 MQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDAL 88
Score = 29.2 bits (65), Expect = 0.47
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 344 EVIEAYIY-LCLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
I I +VG EGVITV++ K + E+EV+E + G ++ +
Sbjct: 20 SFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRV 69
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia
coli [TaxId: 562]}
Length = 97
Score = 54.6 bits (131), Expect = 6e-10
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 561 DLGSVGEIVITKDDTLILKGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASG 620
+ VG I D+T+ GK E +D+ + +E T + + ER+A+LA G
Sbjct: 7 AIAQVGTISANSDETV---GKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGG 63
Query: 621 VAVLKVGGSSEVEVNEKKDRVTDALNATRAAVEE 654
VAV+KVG ++EVE+ EKK RV DAL+ATRAAVEE
Sbjct: 64 VAVIKVGAATEVEMKEKKARVEDALHATRAAVEE 97
Score = 53.8 bits (129), Expect = 1e-09
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 122 PVTTPEEIAQVATISANGDKAVGELISDAMKRV 154
P + + IAQV TISAN D+ VG+LI++AM +V
Sbjct: 1 PCSDSKAIAQVGTISANSDETVGKLIAEAMDKV 33
Score = 41.5 bits (97), Expect = 2e-05
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 410 CLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTA-----KGAKVEFQDAL 463
KVGKEGVITV+DG L DEL+V+E + G ++ + A K K +DAL
Sbjct: 30 MDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEVEMKEKKARVEDAL 88
Score = 35.0 bits (80), Expect = 0.005
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 344 EVIEAYIY-LCLKVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 392
E + I KVGKEGVITV+DG L DEL+V+E + G ++ +
Sbjct: 20 ETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKV 69
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 50.9 bits (122), Expect = 8e-09
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 412 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDAL 463
KVGKEG+ITV++ K+L EL+ + + K K F+DAL
Sbjct: 29 KVGKEGIITVEESKSLETELKFVGVAVI---RVGAATETELKEKKHRFEDAL 77
Score = 48.6 bits (116), Expect = 6e-08
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 355 KVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFIIELKLVLE 400
KVGKEG+ITV++ K+L EL+ + G + + E K E
Sbjct: 29 KVGKEGIITVEESKSLETELKFVGVAVIRVGAATETELKEKKHRFE 74
Score = 43.9 bits (104), Expect = 2e-06
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 6/45 (13%)
Query: 127 EEIAQVATISANGDKAVGELISDAMKRVSAKVEFQDALVLLSESK 171
+ I +VATISAN D VG+LI+DAM++V ++ ++ + ESK
Sbjct: 4 KAIEEVATISAN-DPEVGKLIADAMEKVG-----KEGIITVEESK 42
Score = 40.1 bits (94), Expect = 6e-05
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 620 GVAVLKVGGSSEVEVNEKKDRVTDALNATRAAVEE 654
GVAV++VG ++E E+ EKK R DALNATRAAVEE
Sbjct: 52 GVAVIRVGAATETELKEKKHRFEDALNATRAAVEE 86
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 325 VGKEGVITVKDGKTLTDELEVIEAYIYLC 353
VGKEG+ITV++ K+L EL+ + +
Sbjct: 30 VGKEGIITVEESKSLETELKFVGVAVIRV 58
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 219
Score = 29.8 bits (66), Expect = 1.1
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 623 VLKVGGSSEVEVNEKKDRVTDALNATRAAVEEGIVPGGG 661
VL +GGS +EK + + + +V GGG
Sbjct: 4 VLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGG 42
>g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase
(aspartylglucosaminidase, AGA) {Escherichia coli [TaxId:
562]}
Length = 291
Score = 29.7 bits (66), Expect = 1.1
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 701 EATTSDYEREKLQERLAR-LASGVAVLKVGGSSVEIVKKALRQPCMTIATNAGVDASVVV 759
A S + + E L+ + +G +L+ G S++++V +A+R NAG+ A
Sbjct: 16 RAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPLFNAGIGA---- 71
Query: 760 NKVLESSGEMGYDAM 774
V DA
Sbjct: 72 --VFTRDETHELDAC 84
>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
(Rhodosporidium toruloides) [TaxId: 5286]}
Length = 678
Score = 28.4 bits (63), Expect = 3.9
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 114 THLKELSKPVTTPEE-----------IAQVATISANGDKAVGELISDAMKRVSAKVEFQD 162
T + + K + P + + V + + G + + ++ VEF
Sbjct: 5 TQVDIVEKMLAAPTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEIRSKIDKSVEFLR 64
Query: 163 ALV 165
+ +
Sbjct: 65 SQL 67
>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus
furiosus [TaxId: 2261]}
Length = 225
Score = 27.7 bits (60), Expect = 4.3
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 623 VLKVGGSSEVEVNEKKDR---VTDALNATRAAVEEGIVPGGG 661
V +GGS V N D + L E +V GGG
Sbjct: 4 VFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGG 45
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246
{Methanococcus jannaschii [TaxId: 2190]}
Length = 93
Score = 25.6 bits (56), Expect = 9.3
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 585 EDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVEVNEKKDRVTDA 644
+I ++ D+I ++I + + + ER LA VA +K + E++ + D
Sbjct: 6 AEIRKKIDEIDNKILKARWPWAEKLIAER-NSLAKDVAEIKNQLGIPINDPEREKYIYD- 63
Query: 645 LNATRAAVEEGIVPGGGTALLRCI 668
+ E + G + + +
Sbjct: 64 -RIRKLCKEHNVDENIGIKIFQRL 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.355
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,722,180
Number of extensions: 131983
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 82
Length of query: 788
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 695
Effective length of database: 1,130,706
Effective search space: 785840670
Effective search space used: 785840670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.2 bits)