BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14623
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/557 (68%), Positives = 449/557 (80%), Gaps = 45/557 (8%)
Query: 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD 86
+ R++G +A+KSHI+AAK +ANT+KTSLGP GLDKMMV DGDVTVTNDGATIL +MDVD
Sbjct: 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVD 62
Query: 87 HEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
H+IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLE+AE LLD+GIHPIRIADG+E AA+ A
Sbjct: 63 HQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIA 122
Query: 147 VKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDV 206
++HL+ I+DS V+ N EPLI+TA TTLGSK++N CHRQMAEIAVNAV+ VAD+++RDV
Sbjct: 123 IEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV 182
Query: 207 NFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKH 266
+FELIKVEGKVGG+LEDT L+KGV++DKDFSHPQMPK++ D K+AILTCPFEPP+PKTKH
Sbjct: 183 DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 242
Query: 267 NLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRW 326
LDV SVED+K L+KYE+EKF M+ ++K TGA LA+CQWGFDDEANHLLLQ LPAVRW
Sbjct: 243 KLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRW 302
Query: 327 VGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGG 386
VGGP+IELIAI TGGRIVPRF ELT+EKLG AG
Sbjct: 303 VGGPEIELIAIATGGRIVPRFSELTAEKLGFAG--------------------------- 335
Query: 387 RIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAK 446
LV+EISFGTTKD MLVIE+C+NS+AVTIFIRGGNKMIIEEAK
Sbjct: 336 ------------------LVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAK 377
Query: 447 RSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIP 506
RS+HDALCV+RNL+ +NRVVYGGG DK ++EQYA RAFADALE IP
Sbjct: 378 RSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIP 437
Query: 507 LALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILL 566
+ALAENSG++PI+T+TEV++RQVKEVNPALGIDC+ GTNDMK Q+VIE L KKQQI L
Sbjct: 438 MALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISL 497
Query: 567 STQLVKMILKIDDIRSP 583
+TQ+V+MILKIDDIR P
Sbjct: 498 ATQMVRMILKIDDIRKP 514
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 625 bits (1612), Expect = e-179, Method: Compositional matrix adjust.
Identities = 315/577 (54%), Positives = 415/577 (71%), Gaps = 53/577 (9%)
Query: 12 DEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVT 71
DE GRPFII+++Q +KR G +A KSHI+AA+++A+ +KTSLGP+GLDK+++S DG++T
Sbjct: 23 DEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEIT 82
Query: 72 VTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIH 131
+TNDGATIL M++D+EIAKL+VQLS+SQDDEIGDGTTGVVVLA ALL+QA L+ KGIH
Sbjct: 83 ITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIH 142
Query: 132 PIRIADGFELAAQCAVKHLETIADSFPVNPDNL--EPLIKTAMTTLGSKIINKCHRQMAE 189
PI+IA+GF+ AA+ A+ LE D + D L + L++ A T+LGSKI++K H + AE
Sbjct: 143 PIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAE 202
Query: 190 IAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM-----PKE 244
+AV AV+ V D +++DV+F+LIK++G+VGG + D+ L+ GV++DKDFSHPQM PKE
Sbjct: 203 MAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKE 262
Query: 245 LRD-VKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAI 303
D VKLAILTCPFEPP+PKTKH LD+ SVE+Y++L+ YEQ+KF M+D VK GA + I
Sbjct: 263 GSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVI 322
Query: 304 CQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQ 363
CQWGFDDEANHLLLQ LPAVRWVGG ++E IAI T GRIVPRF++L+ +KLG
Sbjct: 323 CQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLG------- 375
Query: 364 FWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEE 423
T RI E FGTTKD ML+IE+
Sbjct: 376 --------------------TCSRIY------------------EQEFGTTKDRMLIIEQ 397
Query: 424 CENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXX 483
+ +K VT F+RG NKMI++EA+R++HD+LCVVRNLV ++RVVYGGG
Sbjct: 398 SKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEE 457
Query: 484 XDKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLN 543
DK I+QYAFR FA AL++IP+ LAENSGL PI TL+ +KS+Q+KE +G+DC+
Sbjct: 458 ADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGY 517
Query: 544 GTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
G+NDMK+ V++ KKQQILL+TQL +MILKID++
Sbjct: 518 GSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNV 554
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 354 bits (909), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 210/553 (37%), Positives = 312/553 (56%), Gaps = 50/553 (9%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTNDG TIL+ M V+H
Sbjct: 7 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEH 66
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP + G++ AAQ A
Sbjct: 67 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 126
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ L+TIA V + E L K AMT++ K K ++AEI V AV AV D E + V+
Sbjct: 127 ELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK-VD 183
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
+LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L C E +T
Sbjct: 184 KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAE 243
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ + E + E++ MV ++KA+GA + CQ G DD A H L ++ + A R V
Sbjct: 244 IRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 303
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
D+E +A TG ++ ++L+++ LG AGL
Sbjct: 304 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGL--------------------------- 336
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
EE R+IS D M+ +EEC++ KAVT+ IRG + +IEE R
Sbjct: 337 ----VEE------------RKIS----GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 376
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
++ DA+ VV + + R+V GGG + IS EQ A RAFADALE IP
Sbjct: 377 AVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPR 436
Query: 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLS 567
LAEN+GL IE L +V++ N G++ DM + V+E LR K Q I +
Sbjct: 437 TLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 496
Query: 568 TQLVKMILKIDDI 580
+ +M+L+IDD+
Sbjct: 497 AESTEMLLRIDDV 509
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 354 bits (909), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 210/553 (37%), Positives = 312/553 (56%), Gaps = 50/553 (9%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTNDG TIL+ M V+H
Sbjct: 13 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEH 72
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP + G++ AAQ A
Sbjct: 73 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 132
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ L+TIA V + E L K AMT++ K K ++AEI V AV AV D E + V+
Sbjct: 133 ELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK-VD 189
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
+LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L C E +T
Sbjct: 190 KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAE 249
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ + E + E++ MV ++KA+GA + CQ G DD A H L ++ + A R V
Sbjct: 250 IRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 309
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
D+E +A TG ++ ++L+++ LG AGL
Sbjct: 310 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGL--------------------------- 342
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
EE R+IS D M+ +EEC++ KAVT+ IRG + +IEE R
Sbjct: 343 ----VEE------------RKIS----GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 382
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
++ DA+ VV + + R+V GGG + IS EQ A RAFADALE IP
Sbjct: 383 AVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPR 442
Query: 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLS 567
LAEN+GL IE L +V++ N G++ DM + V+E LR K Q I +
Sbjct: 443 TLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 502
Query: 568 TQLVKMILKIDDI 580
+ +M+L+IDD+
Sbjct: 503 AESTEMLLRIDDV 515
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 353 bits (905), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 210/553 (37%), Positives = 310/553 (56%), Gaps = 50/553 (9%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTNDG TIL+ M V+H
Sbjct: 13 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEH 72
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP + G++ AAQ A
Sbjct: 73 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 132
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ L+TIA V + E L K AMT++ K K ++AEI V AV AV D E + V+
Sbjct: 133 ELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK-VD 189
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
+LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L C E +T
Sbjct: 190 KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAE 249
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ + E + E++ MV ++KA+GA + CQ G DD A H L ++ + A R V
Sbjct: 250 IRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 309
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
D+E +A TG ++ L+++ LG AGL
Sbjct: 310 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGL--------------------------- 342
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
EE R+IS D M+ +EEC++ KAVT+ IRG + +IEE R
Sbjct: 343 ----VEE------------RKIS----GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 382
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
++ DA+ VV + + R+V GGG + IS EQ A RAFADALE IP
Sbjct: 383 AVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPR 442
Query: 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLS 567
LAEN+GL IE L +V++ N G++ DM + V+E LR K Q I +
Sbjct: 443 TLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 502
Query: 568 TQLVKMILKIDDI 580
+ +M+L+IDD+
Sbjct: 503 AESTEMLLRIDDV 515
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 353 bits (905), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 210/553 (37%), Positives = 310/553 (56%), Gaps = 50/553 (9%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTNDG TIL+ M V+H
Sbjct: 7 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEH 66
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP + G++ AAQ A
Sbjct: 67 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 126
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ L+TIA V + E L K AMT++ K K ++AEI V AV AV D E + V+
Sbjct: 127 ELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK-VD 183
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
+LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L C E +T
Sbjct: 184 KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAE 243
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ + E + E++ MV ++KA+GA + CQ G DD A H L ++ + A R V
Sbjct: 244 IRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 303
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
D+E +A TG ++ L+++ LG AGL
Sbjct: 304 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGL--------------------------- 336
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
EE R+IS D M+ +EEC++ KAVT+ IRG + +IEE R
Sbjct: 337 ----VEE------------RKIS----GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 376
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
++ DA+ VV + + R+V GGG + IS EQ A RAFADALE IP
Sbjct: 377 AVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPR 436
Query: 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLS 567
LAEN+GL IE L +V++ N G++ DM + V+E LR K Q I +
Sbjct: 437 TLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 496
Query: 568 TQLVKMILKIDDI 580
+ +M+L+IDD+
Sbjct: 497 AESTEMLLRIDDV 509
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 208/553 (37%), Positives = 305/553 (55%), Gaps = 72/553 (13%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTNDG TIL+ M V+H
Sbjct: 7 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEH 66
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP + G++ AAQ A
Sbjct: 67 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 126
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ L+TIA V + E L K AMT++ K K ++AEI V AV AV D E + V+
Sbjct: 127 ELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK-VD 183
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
+LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L C E
Sbjct: 184 KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE--------- 234
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ E MV ++KA+GA + CQ G DD A H L ++ + A R V
Sbjct: 235 -------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
D+E +A TG ++ ++L+++ LG AGL
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGL--------------------------- 314
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
EE R+IS D M+ +EEC++ KAVT+ IRG + +IEE R
Sbjct: 315 ----VEE------------RKIS----GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 354
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
++ DA+ VV + + R+V GGG + IS EQ A RAFADALE IP
Sbjct: 355 AVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPR 414
Query: 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLS 567
LAEN+GL IE L +V++ N G++ DM + V+E LR K Q I +
Sbjct: 415 TLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 474
Query: 568 TQLVKMILKIDDI 580
+ +M+L+IDD+
Sbjct: 475 AESTEMLLRIDDV 487
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 208/553 (37%), Positives = 305/553 (55%), Gaps = 72/553 (13%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTNDG TIL+ M V+H
Sbjct: 13 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEH 72
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP + G++ AAQ A
Sbjct: 73 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 132
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ L+TIA V + E L K AMT++ K K ++AEI V AV AV D E + V+
Sbjct: 133 ELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK-VD 189
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
+LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L C E
Sbjct: 190 KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE--------- 240
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ E MV ++KA+GA + CQ G DD A H L ++ + A R V
Sbjct: 241 -------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 287
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
D+E +A TG ++ ++L+++ LG AGL
Sbjct: 288 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGL--------------------------- 320
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
EE R+IS D M+ +EEC++ KAVT+ IRG + +IEE R
Sbjct: 321 ----VEE------------RKIS----GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 360
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
++ DA+ VV + + R+V GGG + IS EQ A RAFADALE IP
Sbjct: 361 AVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPR 420
Query: 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLS 567
LAEN+GL IE L +V++ N G++ DM + V+E LR K Q I +
Sbjct: 421 TLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 480
Query: 568 TQLVKMILKIDDI 580
+ +M+L+IDD+
Sbjct: 481 AESTEMLLRIDDV 493
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 342 bits (876), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 208/553 (37%), Positives = 303/553 (54%), Gaps = 72/553 (13%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTNDG TIL+ M V+H
Sbjct: 7 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEH 66
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP + G++ AAQ A
Sbjct: 67 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 126
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ L+TIA V + E L K AMT++ K K ++AEI V AV AV D E + V+
Sbjct: 127 ELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK-VD 183
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
+LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L C E
Sbjct: 184 KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE--------- 234
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ E MV ++KA+GA + CQ G DD A H L ++ + A R V
Sbjct: 235 -------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
D+E +A TG ++ L+++ LG AGL
Sbjct: 282 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGL--------------------------- 314
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
EE R+IS D M+ +EEC++ KAVT+ IRG + +IEE R
Sbjct: 315 ----VEE------------RKIS----GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 354
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
++ DA+ VV + + R+V GGG + IS EQ A RAFADALE IP
Sbjct: 355 AVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPR 414
Query: 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLS 567
LAEN+GL IE L +V++ N G++ DM + V+E LR K Q I +
Sbjct: 415 TLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 474
Query: 568 TQLVKMILKIDDI 580
+ +M+L+IDD+
Sbjct: 475 AESTEMLLRIDDV 487
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 340 bits (871), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 207/553 (37%), Positives = 304/553 (54%), Gaps = 72/553 (13%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTNDG TIL+ M V+H
Sbjct: 7 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEH 66
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP + G++ AAQ A
Sbjct: 67 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 126
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ L+TIA V + E L K AMT++ K K ++AEI V AV AV D E + V+
Sbjct: 127 ELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK-VD 183
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
+LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L C E
Sbjct: 184 KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE--------- 234
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ E MV ++KA+GA + CQ G DD A H L ++ + A R V
Sbjct: 235 -------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
D+E +A TG ++ ++L+++ LG AGL
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGL--------------------------- 314
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
EE R+IS D M+ +EEC++ KAVT+ IRG + +IEE R
Sbjct: 315 ----VEE------------RKIS----GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 354
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
++ A+ VV + + R+V GGG + IS EQ A RAFADALE IP
Sbjct: 355 AVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPR 414
Query: 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLS 567
LAEN+GL IE L +V++ N G++ DM + V+E LR K Q I +
Sbjct: 415 TLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSA 474
Query: 568 TQLVKMILKIDDI 580
+ +M+L+IDD+
Sbjct: 475 AESTEMLLRIDDV 487
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 213/570 (37%), Positives = 318/570 (55%), Gaps = 58/570 (10%)
Query: 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTN 74
G+P +IL + +R +G DA + +I+AA+ IA T++T+LGPKG+DKM+V S GD+ VTN
Sbjct: 6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
DGATIL +D+ H AK+MV+++++QD E GDGTT VV+AG LL +AE LLD+ IHP
Sbjct: 64 DGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
I G+ LAA+ A + L+ IA V+PD+ E L+K A T++ K +A++AV A
Sbjct: 124 ITKGYALAAEKAQEILDEIA--IRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEA 181
Query: 195 VMAVADLEKRD----VNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKL 250
V VA EK+D V+ + IK E K G +E++ LV+GVVIDK+ HP+MPK + + K+
Sbjct: 182 VKQVA--EKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKI 239
Query: 251 AILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDD 310
A++ E + +T +++ S + + E++ MVD + TGA + Q G DD
Sbjct: 240 ALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDD 299
Query: 311 EANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRS 370
A H L + + AVR V D+E +A TG +IV ++LT E LG A + +R
Sbjct: 300 LAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEV-----VEERK 354
Query: 371 HAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAV 430
AG ++M+ +E C+N KAV
Sbjct: 355 LAG------------------------------------------ENMIFVEGCKNPKAV 372
Query: 431 TIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSI 490
TI IRGG + +I+E +R++ DA+ VV++++ + V+ GG ++
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 491 EQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQ 550
E A FADAL+ IP LAEN+GL +E L +V S K +GID DM +
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLGIGIDVFEGKPADMLE 491
Query: 551 QNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ +IE LR KKQ I +++ MIL+IDD+
Sbjct: 492 KGIIEPLRVKKQAIKSASEAAIMILRIDDV 521
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 335 bits (858), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 207/568 (36%), Positives = 320/568 (56%), Gaps = 54/568 (9%)
Query: 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTN 74
G+P IL+ + KR G DA+K +I AA I+N++++SLGP+G+DKM+V S GD+ +TN
Sbjct: 4 GQPIFILK--EGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITN 61
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
DG TILK MDV+H AK+MV++S++QD +GDGTT V++AG LL+QA+ L+++ +HP
Sbjct: 62 DGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTV 121
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
I++G+ +A++ A + ++ I S + D L+K A T+L SK + ++AEI+ A
Sbjct: 122 ISEGYRMASEEAKRVIDEI--STKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEA 179
Query: 195 VMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAI 252
V +VA+L K V+F+ I+V K GG ++DT L+ G+++DK+ HP MP ++D K+A+
Sbjct: 180 VKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIAL 239
Query: 253 LTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEA 312
L P E +P+ NL ++ ++ E+ MVDK+K+ GA + I Q G DD A
Sbjct: 240 LDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMA 299
Query: 313 NHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHA 372
H L + + AVR V D++ +A TG IV +E++S LG A
Sbjct: 300 QHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTA-------------- 345
Query: 373 GHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTI 432
R E++ K+G +D+M + C+N KAV+I
Sbjct: 346 -----------------ERVEQV---KVG-------------EDYMTFVTGCKNPKAVSI 372
Query: 433 FIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQ 492
+RG + +++E +RSI D+L VV + + + GGG KI +Q
Sbjct: 373 LVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQ 432
Query: 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQN 552
A FADA+E IP ALAEN+GL PI+ L ++++ K N GI+ DM +
Sbjct: 433 LAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKG-NKTYGINVFTGEIEDMVKNG 491
Query: 553 VIEALRSKKQQILLSTQLVKMILKIDDI 580
VIE +R KQ I +T+ MIL+IDD+
Sbjct: 492 VIEPIRVGKQAIESATEAAIMILRIDDV 519
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 332 bits (852), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 212/570 (37%), Positives = 317/570 (55%), Gaps = 58/570 (10%)
Query: 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTN 74
G+P +IL + +R +G DA + +I+AA+ IA T++T+LGPKG+DKM+V S GD+ VTN
Sbjct: 6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
D ATIL +D+ H AK+MV+++++QD E GDGTT VV+AG LL +AE LLD+ IHP
Sbjct: 64 DCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
I G+ LAA+ A + L+ IA V+PD+ E L+K A T++ K +A++AV A
Sbjct: 124 ITKGYALAAEKAQEILDEIA--IRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEA 181
Query: 195 VMAVADLEKRD----VNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKL 250
V VA EK+D V+ + IK E K G +E++ LV+GVVIDK+ HP+MPK + + K+
Sbjct: 182 VKQVA--EKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKI 239
Query: 251 AILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDD 310
A++ E + +T +++ S + + E++ MVD + TGA + Q G DD
Sbjct: 240 ALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDD 299
Query: 311 EANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRS 370
A H L + + AVR V D+E +A TG +IV ++LT E LG A + +R
Sbjct: 300 LAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEV-----VEERK 354
Query: 371 HAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAV 430
AG ++M+ +E C+N KAV
Sbjct: 355 LAG------------------------------------------ENMIFVEGCKNPKAV 372
Query: 431 TIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSI 490
TI IRGG + +I+E +R++ DA+ VV++++ + V+ GG ++
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 491 EQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQ 550
E A FADAL+ IP LAEN+GL +E L +V S K +GID DM +
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLGIGIDVFEGKPADMLE 491
Query: 551 QNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ +IE LR KKQ I +++ MIL+IDD+
Sbjct: 492 KGIIEPLRVKKQAIKSASEAAIMILRIDDV 521
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 332 bits (850), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 212/570 (37%), Positives = 317/570 (55%), Gaps = 58/570 (10%)
Query: 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTN 74
G+P +IL + +R +G DA + +I+AA+ IA T++T+LGPKG+DKM+V S GD+ VTN
Sbjct: 6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
D ATIL +D+ H AK+MV+++++QD E GDGTT VV+AG LL +AE LLD+ IHP
Sbjct: 64 DCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
I G+ LAA+ A + L+ IA V+PD+ E L+K A T++ K +A++AV A
Sbjct: 124 IIKGYALAAEKAQEILDEIA--IRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEA 181
Query: 195 VMAVADLEKRD----VNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKL 250
V VA EK+D V+ + IK E K G +E++ LV+GVVIDK+ HP+MPK + + K+
Sbjct: 182 VKQVA--EKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKI 239
Query: 251 AILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDD 310
A++ E + +T +++ S + + E++ MVD + TGA + Q G DD
Sbjct: 240 ALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDD 299
Query: 311 EANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRS 370
A H L + + AVR V D+E +A TG +IV ++LT E LG A + +R
Sbjct: 300 LAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEV-----VEERK 354
Query: 371 HAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAV 430
AG ++M+ +E C+N KAV
Sbjct: 355 LAG------------------------------------------ENMIFVEGCKNPKAV 372
Query: 431 TIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSI 490
TI IRGG + +I+E +R++ DA+ VV++++ + V+ GG ++
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 491 EQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQ 550
E A FADAL+ IP LAEN+GL +E L +V S K +GID DM +
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLGIGIDVFEGKPADMLE 491
Query: 551 QNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ +IE LR KKQ I +++ MIL+IDD+
Sbjct: 492 KGIIEPLRVKKQAIKSASEAAIMILRIDDV 521
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/570 (34%), Positives = 307/570 (53%), Gaps = 53/570 (9%)
Query: 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTN 74
G P IIL+ + R G +A++++I A K + LK++ GP+G+DKM+V S GD+T+TN
Sbjct: 13 GIPVIILK--EGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITN 70
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
DGATIL MD+ H AKL+VQ+++ QD+E DGT V+ +G L+++AE LL K +HP
Sbjct: 71 DGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTI 130
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
I G++ A + A++ ++ +A + +N +L L K AMT+L SK + +A+I V A
Sbjct: 131 IISGYKKAEEVALQTIQELAQTVSINDTDL--LRKIAMTSLSSKAVAGAREYIADIVVKA 188
Query: 195 VMAVADL--EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAI 252
V VA+L +K V+ + I++ K GG + DT LV G+V+DK+ HP MPK L + K+A+
Sbjct: 189 VTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIAL 248
Query: 253 LTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEA 312
+ E +P+ + + ++ E+ VDK+ ATGA + ICQ G D+ A
Sbjct: 249 IDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVA 308
Query: 313 NHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHA 372
L +K + AVR A
Sbjct: 309 QSYLAKKGVLAVR---------------------------------------------RA 323
Query: 373 GHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTI 432
+D+E +A TGGR+V +E++ + LG A L+ E G +D M+ +E +N K+++I
Sbjct: 324 KKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVG--EDKMVFVEGAKNPKSISI 381
Query: 433 FIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQ 492
IRGG + +++E +R++ DAL V +++ + R + GGG ++ EQ
Sbjct: 382 LIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQ 441
Query: 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQN 552
A A+A+ALES+ L EN+G PI+ L +++S E N GID DM Q+
Sbjct: 442 LAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKG 501
Query: 553 VIEALRSKKQQILLSTQLVKMILKIDDIRS 582
VIE K I +T+ ++L+IDD+ S
Sbjct: 502 VIEPALVKMNAIKAATEAATLVLRIDDVVS 531
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 325 bits (834), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 201/568 (35%), Positives = 313/568 (55%), Gaps = 60/568 (10%)
Query: 17 PFIILR--NQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTN 74
P ++L+ Q+EQ G +A +++I AAK IA+ ++T+LGPKG+DKM+V S GD+ ++N
Sbjct: 7 PILVLKEGTQREQ----GKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISN 62
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
DGATILK MDV+H AK++V++S++QD +GDGTT VVL+G LL+QAE LLD+G+HP
Sbjct: 63 DGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTV 122
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
I++G+ LA A K ++ IA+ + L K A+T L K + +A++ V A
Sbjct: 123 ISNGYRLAVNEARKIIDEIAEKSTDDA----TLRKIALTALSGKNTGLSNDFLADLVVKA 178
Query: 195 VMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAI 252
V AVA++ K V+ IKV+ K GG + DT + G+VIDK+ H +MP +++ K+A+
Sbjct: 179 VNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIAL 238
Query: 253 LTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEA 312
+ E + + + + + ++ E F MV+K+K +GA + +CQ G DD A
Sbjct: 239 IDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVA 298
Query: 313 NHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHA 372
H L ++ + AVR V D+E +A TG +IV ++LT LG+A
Sbjct: 299 QHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEA-------------- 344
Query: 373 GHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTI 432
E + K+G D M + C+N KAV+I
Sbjct: 345 --------------------ETVEERKIG-------------DDRMTFVMGCKNPKAVSI 371
Query: 433 FIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQ 492
IRGG ++ E +R+++DA+ VV + + ++GGG + + EQ
Sbjct: 372 LIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQ 431
Query: 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQN 552
A AFA ALE IP LAEN+G+ PI TL ++K+ K ++G+D NG DMK +
Sbjct: 432 LAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKG-RISVGVDLDNNGVGDMKAKG 490
Query: 553 VIEALRSKKQQILLSTQLVKMILKIDDI 580
V++ LR K + + ++ MIL+IDD+
Sbjct: 491 VVDPLRVKTHALESAVEVATMILRIDDV 518
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 191/555 (34%), Positives = 303/555 (54%), Gaps = 67/555 (12%)
Query: 38 SHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLS 97
S+I AAK +A+ ++TSLGPKG+DKM+ GDVT+TNDGATILK M V H A+++V+LS
Sbjct: 15 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 74
Query: 98 QSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIAD-S 156
++QD E GDGTT VV++AG+LL+ LL KGIHP I++ F+ A + K +E + D S
Sbjct: 75 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALE---KGIEILTDMS 131
Query: 157 FPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVAD-LEKRDVNFELIKVEG 215
PV + E L+ +A T+L SK++++ ++ ++V+AVM V D V+ IK+
Sbjct: 132 RPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVK 191
Query: 216 KVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQ-SVE 274
K+GG ++D LV+G+V+ + ++ + + + K+ ++ P K ++D Q V
Sbjct: 192 KLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAP----KTDMDNQIVVS 246
Query: 275 DYKELRKYEQEKFA---SMVDKVKATGATLAICQW-----GFDDEANHLLLQKQLPAVRW 326
DY ++ + +E+ A ++V ++K TG + + Q D A H L + ++ V+
Sbjct: 247 DYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKD 306
Query: 327 VGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGG 386
+ DIE I G + V ++ T++ LG A L + N
Sbjct: 307 IEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLN------------------- 347
Query: 387 RIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECEN-SKAVTIFIRGGNKMIIEEA 445
G L++ I C + K VTI +RG NK++IEEA
Sbjct: 348 --------------GSGKLIK-------------ITGCASPGKTVTIVVRGSNKLVIEEA 380
Query: 446 KRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESI 505
+RSIHDALCV+R LV + ++ GGG +S +E Y RAFADA+E I
Sbjct: 381 ERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVI 440
Query: 506 PLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQIL 565
P LAEN+GL+PI T+TE+++R + GI+ G +++ ++ V++ L +
Sbjct: 441 PSTLAENAGLNPISTVTELRNRHAQG-EKTTGINVRKGGISNILEELVVQPLLVSVSALT 499
Query: 566 LSTQLVKMILKIDDI 580
L+T+ V+ ILKIDD+
Sbjct: 500 LATETVRSILKIDDV 514
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/522 (33%), Positives = 282/522 (54%), Gaps = 53/522 (10%)
Query: 62 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 121
M+V S GD+ +TNDGATILK MD+ H AK++V++S++QD E+GDGTT VL+G LL +
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 122 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 181
AE L+ KG+H I++G+ AA+ + LETI + ++PD+ LIK A T + K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETI--TIAISPDDEAALIKIAGTAITGKGAE 118
Query: 182 KCHRQMAEIAVNAVMAVADLEKRDVN---FELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 238
+++ + V AV ++ + E+ + E IK+E + GG ++D+ L+ G+VIDK+ SH
Sbjct: 119 AYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSH 178
Query: 239 PQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 298
P MP+++ + K+ +L+CP E + + + + S + E++ M +KV A+G
Sbjct: 179 PNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASG 238
Query: 299 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKA 358
A + CQ G DD A + + + + AVR V D++ ++ VTG I+ +++T+E +G A
Sbjct: 239 ANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTA 298
Query: 359 GLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHM 418
GL + V GG+ M
Sbjct: 299 GLVEEKE-----------------VRGGK------------------------------M 311
Query: 419 LVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXX 478
+ C+NSKAVT+ + GG + +++ +++DAL VV ++ + +VV GGG
Sbjct: 312 TYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSL 371
Query: 479 XXXXXXDKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGI 538
+ EQ A FA+ALE IP+ALAEN+GL PI+ + E++S+ K N G+
Sbjct: 372 RLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKG-NKNAGL 430
Query: 539 DCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ DM + +VIE LR K Q I + + MIL+IDD+
Sbjct: 431 NVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDV 472
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 274 bits (701), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 182/555 (32%), Positives = 303/555 (54%), Gaps = 63/555 (11%)
Query: 37 KSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQL 96
K++I+AA+++A+ ++TSLGPKG+DKM+ +S G++ ++NDG TILK M + H +A+++V++
Sbjct: 22 KANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEV 81
Query: 97 SQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADS 156
S +QD E GDGTT VV+L GALL AE LL+KGIHP IAD F+ AA+ +V L +
Sbjct: 82 SAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMC-- 139
Query: 157 FPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGK 216
V+ + E L++ A T+L SKI+++ +A +AV++V+ ++D ++V+ I++ K
Sbjct: 140 HKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKK 199
Query: 217 VGGKLEDTMLVKGVVIDKD-FSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVED 275
VGG ++DT ++ GVV+ + P K+ ++ PP+P T++N+ V D
Sbjct: 200 VGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNI---IVND 256
Query: 276 YKELRKYEQEKFASMVDKVKATGATL--------AICQWGFDDEANHLLLQKQLPAVRWV 327
Y+++ K +E+ A +++ K +I + +D A H L + + V+ +
Sbjct: 257 YRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDI 316
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
+IE ++ GLG + DIEL
Sbjct: 317 EREEIEFLS---------------------KGLGCKPI---------ADIEL-------- 338
Query: 388 IVPRFEELTSEKLGKAGLVREI-SFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAK 446
T ++L A LV EI S G+ + I V++ IRG N MII+E +
Sbjct: 339 -------FTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETE 391
Query: 447 RSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIP 506
RS+HDALCV+R LV E ++ GGG + ++ + ++ FA ALE IP
Sbjct: 392 RSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIP 451
Query: 507 LALAENSGLSPIETLTEVKSRQVK-EVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQIL 565
LAEN+GL+ I+ +TE++S+ E+N GI +GT + ++++++ + I
Sbjct: 452 TTLAENAGLNSIKVVTELRSKHENGELND--GISVRRSGTTNTYEEHILQPVLVSTSAIT 509
Query: 566 LSTQLVKMILKIDDI 580
L+++ VK IL+IDDI
Sbjct: 510 LASECVKSILRIDDI 524
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 261 bits (668), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 165/558 (29%), Positives = 288/558 (51%), Gaps = 51/558 (9%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR G +I AAK IA+ ++T LGPK + KM++ G + +TNDG IL+ + V H
Sbjct: 3 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQH 62
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK M+++S++QD+E+GDGTT V++LAG +L AEH L++ +HP + + A +
Sbjct: 63 PAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMI 122
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRD 205
L+ I S PV+ N + ++ +++ +K+I++ IA++AV V E +++
Sbjct: 123 STLKKI--SIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKE 180
Query: 206 VNF-ELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT 264
++ + +VE GG +ED+ +++GV+I+KD +HP+M + +++ ++ +L E + ++
Sbjct: 181 IDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 240
Query: 265 KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAV 324
+ ++++ ED+ + + E+E + + + + I + G D A H L++ + A+
Sbjct: 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAI 300
Query: 325 RWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVT 384
R V D IA G RIV R EEL E +G T
Sbjct: 301 RRVRKTDNNRIARACGARIVSRPEELREEDVG---------------------------T 333
Query: 385 GGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEE 444
G AGL+ G ++ I EC++ KA TI +RG +K I+ E
Sbjct: 334 G-----------------AGLLEIKKIG--DEYFTFITECKDPKACTILLRGASKEILSE 374
Query: 445 AKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALES 504
+R++ DA+ V RN++ + ++V GGG ++ +EQ+ +RA A ALE
Sbjct: 375 VERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEV 434
Query: 505 IPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQI 564
IP L +N G S I LT ++++ +E G++ DMK+ + E L K Q
Sbjct: 435 IPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTY 494
Query: 565 LLSTQLVKMILKIDDIRS 582
+ + ++L+IDDI S
Sbjct: 495 KTAVETAVLLLRIDDIVS 512
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 182/596 (30%), Positives = 315/596 (52%), Gaps = 45/596 (7%)
Query: 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDG 76
P + + QE R G A S+I AAK +A+ ++T LGPK + KM++ G + +TNDG
Sbjct: 4 PVVFMNASQE--RTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDG 61
Query: 77 ATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ-AEHLLDKGIHPIRI 135
IL+ +DV H AK M++LS++QD+E+GDGTT V++LAG +L Q A +L++K IHP+ I
Sbjct: 62 HAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVII 121
Query: 136 ADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAV 195
+ A A++ ++ + S PV+ +N + K ++G+K + +M E+A++AV
Sbjct: 122 IQALKKALTDALEVIKQV--SKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAV 179
Query: 196 MAV-ADLEKR---DVNFEL-----IKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELR 246
V DL + + NFE+ ++VE GG + D+ ++KGV+++KD HP+M + +
Sbjct: 180 KTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIE 239
Query: 247 DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQW 306
+ ++ +L CP E + +++ N++++ ED+ + + E+E+ M +++ A TL I +
Sbjct: 240 NPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEK 299
Query: 307 GFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLG-KAGL----- 360
G D A H LL+ +R V D IA VTG IV R E+L +G GL
Sbjct: 300 GVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEM 359
Query: 361 -GNQFWY---NQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLV--------RE 408
G++++ N + + G P+FE+ + ++ K + ++
Sbjct: 360 IGDEYFSFLDNCKEPGSGS----------GWSHPQFEKGSGKRRWKKNFIAVSAANRFKK 409
Query: 409 ISF--GTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVV 466
IS H + KA TI +RGG+K I+ E R++ DA+ V RN++ +
Sbjct: 410 ISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLS 469
Query: 467 YGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKS 526
GGG ++ I+Q+ ++A ADA+E IP L +N+G PI L+++++
Sbjct: 470 PGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRA 529
Query: 527 RQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRS 582
+ + N GID DM + E K+Q + + + ++L++DDI S
Sbjct: 530 KHAQG-NFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVS 584
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 232 bits (591), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 174/567 (30%), Positives = 285/567 (50%), Gaps = 71/567 (12%)
Query: 34 DAIKS-HIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKL 92
+AI+S +++AA +IAN +K+SLGP GLDKM+V GDVT+TNDGATILKL++V+H AK+
Sbjct: 9 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 68
Query: 93 MVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLET 152
+ +L+ QD E+GDGTT VV++A LL+ A+ L+ + IHP + G+ LA + AV++
Sbjct: 69 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 125
Query: 153 IADSFPVNPDNL--EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRD----- 205
I+++ +N D L + LI A T++ SK+I A + V+AV+A+ + R
Sbjct: 126 ISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYP 185
Query: 206 VN-FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT 264
VN ++K G+ ++E +ML+ G ++ MPK + + K+A L + KT
Sbjct: 186 VNSINVLKAHGR--SQME-SMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQ----KT 238
Query: 265 KHNLDVQSV----EDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQ 320
K L VQ V E ++R+ E + + K+ ATGA + + G DD ++
Sbjct: 239 KMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAG 298
Query: 321 LPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELI 380
AVR V D++ IA +G ++ L E+ +A + Q
Sbjct: 299 AMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQ----------------- 341
Query: 381 AIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKM 440
EE+ E++ D +++I+ + + ++ +RG N
Sbjct: 342 -----------AEEVVQERI-------------CDDELILIKNTKARTSASVILRGANDF 377
Query: 441 IIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFAD 500
+ +E +RS+HDALCVV+ ++ VV GGG + S EQ A FA
Sbjct: 378 MCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFAR 437
Query: 501 ALESIPLALAENSGLSPIETLTEVKS-RQVKEVNPA------LGIDCMLNGTNDMKQQNV 553
+L IP LA N+ + + ++++ +VNP +G+D + D KQ V
Sbjct: 438 SLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGV 497
Query: 554 IEALRSKKQQILLSTQLVKMILKIDDI 580
E K + + +T+ IL+IDD+
Sbjct: 498 FEPTIVKVKSLKFATEAAITILRIDDL 524
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 218 bits (555), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 168/550 (30%), Positives = 273/550 (49%), Gaps = 63/550 (11%)
Query: 38 SHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVT-VTNDGATILKLMDVDHEIAKLMVQL 96
S V A + + +K++LGPKG+DK++ S+ + VTNDGATILK + +D+ AK++V +
Sbjct: 21 SAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNI 80
Query: 97 SQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKG-IHPIRIADGFELAAQCAVKHLETIA- 154
S+ QDDE+GDGTT V VL+ LL +AE L+D+ IHP I +G+ LA+ A+ L A
Sbjct: 81 SKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAV 140
Query: 155 DSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVE 214
D+ E LI A TTL SKI+++ AE+A NA++ + K N E I++
Sbjct: 141 DNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRL----KGSTNLEHIQII 196
Query: 215 GKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK---TKHNLDVQ 271
+GGKL D+ L +G ++ K F + Q PK + + K+ I + + K TK +D
Sbjct: 197 KILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKIFGTKFKVD-- 253
Query: 272 SVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPD 331
S +L K E+EK + + K+ G I + D L + ++
Sbjct: 254 STAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEG 313
Query: 332 IELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPR 391
+E +A+VTGG +V F+E + KL
Sbjct: 314 VERLALVTGGEVVSTFDEPSKCKL------------------------------------ 337
Query: 392 FEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHD 451
G+ ++ EI G + L C+ +A TI +RG ++EA+RS+HD
Sbjct: 338 ---------GECDVIEEIMLG--EQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHD 386
Query: 452 ALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPLALAE 511
AL V+ E R V GGG I + A AFA AL +P LA+
Sbjct: 387 ALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILAD 446
Query: 512 NSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGT-NDMKQQNVIEALRSKKQQILLSTQL 570
N+G E +++++S ++ + G+D + NGT DM+Q ++E+ + K+ + +++
Sbjct: 447 NAGFDSSELVSKLRSSIYNGISTS-GLD-LNNGTIADMRQLGIVESYKLKRAVVSSASEA 504
Query: 571 VKMILKIDDI 580
+++L++D+I
Sbjct: 505 AEVLLRVDNI 514
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 161/553 (29%), Positives = 261/553 (47%), Gaps = 60/553 (10%)
Query: 38 SHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLS 97
S+I A + IA ++T+LGP+G+DK++V G T++NDGATILKL+DV H AK +V ++
Sbjct: 15 SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIA 74
Query: 98 QSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSF 157
+SQD E+GDGTT V +LA L+Q + +++G+HP I F A Q AV ++ IA +
Sbjct: 75 KSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV 134
Query: 158 PVNPDNLEP---LIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVE 214
D +E L K AMT L SK+I++ A++ V+AVM + DL + ++I ++
Sbjct: 135 K-KEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL----LQLKMIGIK 189
Query: 215 GKVGGKLEDTMLVKGVVIDKDFSHP---QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQ 271
GG LE++ LV GV K FS+ PK+ + +A+L E K + V
Sbjct: 190 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVH 249
Query: 272 SVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPD 331
+VEDY+ + E ++K+ +GA + + + D A + + V D
Sbjct: 250 TVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEED 309
Query: 332 IELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPR 391
++ + GG I L+S+ LG+ + F Q GG R
Sbjct: 310 LKRTMMACGGSIQTSVNALSSDVLGRCQV---FEETQ---------------IGGE---R 348
Query: 392 FEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHD 451
+ T C +K TI +RGG + +EE +RS+HD
Sbjct: 349 YNFFTG--------------------------CPKAKTCTIILRGGAEQFMEETERSLHD 382
Query: 452 ALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPLALAE 511
A+ +VR + + VV GGG I +Q A+A ALE IP L +
Sbjct: 383 AIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCD 442
Query: 512 NSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLV 571
N+G L ++++R + G+D D + V E + + +++
Sbjct: 443 NAGFDATNILNKLRARHAQG-GMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAA 501
Query: 572 KMILKIDD-IRSP 583
+I+ +D+ I++P
Sbjct: 502 CLIVSVDETIKNP 514
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 144/498 (28%), Positives = 236/498 (47%), Gaps = 54/498 (10%)
Query: 32 GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAK 91
G I S+I A + LK +LGP G D ++V+S+ T++NDGATILKL+DV H AK
Sbjct: 22 GKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAK 81
Query: 92 LMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLE 151
+V +S++QD E+GDGTT V +LAG L+++A+ L++GI I G+ A AV+ +
Sbjct: 82 TLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKIN 141
Query: 152 TIA-DSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFEL 210
+A D E L + A T + SK+I+ ++ V+AV++ L++ D++ +L
Sbjct: 142 ELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLS---LDRNDLDDKL 198
Query: 211 IKVEGKVGGKLEDTMLVKGVVIDKDFSHP---QMPKELRDVKLAILTCPFEPPRPKTKHN 267
I ++ GG +E+++ + GV K FS+ Q PK+ + K+ L E K
Sbjct: 199 IGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAE 258
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 327
+ V+ VEDY+ + E + + +V+ TGA + + + D A +
Sbjct: 259 VRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRN------- 311
Query: 328 GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGR 387
I GR+ D+ + GG
Sbjct: 312 ---------IFCAGRV-----------------------------SADDMNRVIQAVGGS 333
Query: 388 IVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKR 447
I ++ E LG L E+ G+ + ++ + C +K T+ +RGG + +I E +R
Sbjct: 334 IQSTTSDIKPEHLGTCALFEEMQIGSERYNLF--QGCPQAKTCTLLLRGGAEQVIAEVER 391
Query: 448 SIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
S+HDA+ +V+ + +V GGG I+ +Q AFA ALE IP
Sbjct: 392 SLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPR 451
Query: 508 ALAENSGLSPIETLTEVK 525
L EN+G IE L +++
Sbjct: 452 QLCENAGFDAIEILNKLR 469
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 162/547 (29%), Positives = 259/547 (47%), Gaps = 57/547 (10%)
Query: 38 SHIVAAKNIANTLKTSLGPKGLDKMMVSS--DGDVTVTNDGATILKLMDVDHEIAKLMVQ 95
S + A I + +K++LGPKG+DK+++SS D + VTNDGATILK + VD+ AK++V
Sbjct: 14 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 73
Query: 96 LSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKH-LETIA 154
+S+ QDDE+GDGTT V VLA LL +AE L+ K IHP I G+ A + A + L +
Sbjct: 74 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAV 133
Query: 155 DSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVE 214
D + L+ A TTL SK++ ++AV AV+ + K N E I V
Sbjct: 134 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 189
Query: 215 GKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT-KHNLDVQSV 273
K+GG L D+ L +G ++DK Q PK + + K+ I + + K + V S
Sbjct: 190 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 248
Query: 274 EDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIE 333
E+ E+EK V+++ G I + + L + A+ +E
Sbjct: 249 AKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVE 308
Query: 334 LIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFE 393
+A+VTGG I F+ EL+
Sbjct: 309 RLALVTGGEIASTFDH---------------------------PELV------------- 328
Query: 394 ELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDAL 453
KLG L+ E+ G +D ++ +A TI +RG + I++EA+RS+HDAL
Sbjct: 329 -----KLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDAL 381
Query: 454 CVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPLALAENS 513
CV+ V ++R VYGGG + E A ++A AL +P +A+N+
Sbjct: 382 CVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNA 441
Query: 514 GLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKM 573
G + + ++++ E G+D DM + E+ + K+Q +L + + ++
Sbjct: 442 GYDSADLVAQLRAAH-SEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEV 500
Query: 574 ILKIDDI 580
IL++D+I
Sbjct: 501 ILRVDNI 507
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/504 (29%), Positives = 236/504 (46%), Gaps = 47/504 (9%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
++I G+D +++A +AN +K+SLGP GLDKM+V GD TVTNDGATIL L+DV H
Sbjct: 18 EKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQH 77
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
K++V+L+Q QD EIGDGTT VV++A LL++A L+ IHP I GF +A + A+
Sbjct: 78 PAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAI 137
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAV-ADLEKRDV 206
+ + + S V+ E LI A T++ SKII + + V+A++AV K ++
Sbjct: 138 RFINEVL-STSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEI 196
Query: 207 NFEL--IKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELR--DVKLAILTCPFEPPRP 262
+ + + V G +++LV G ++ + MPK + +VK+A L + R
Sbjct: 197 KYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARM 256
Query: 263 KTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLP 322
+++ E +++RK E V K+ GA + + G DD ++ ++
Sbjct: 257 AMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIM 316
Query: 323 AVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAI 382
VR D+ IA TG +V L E
Sbjct: 317 GVRRCKKEDLRRIARATGATLVSSMSNLEGE----------------------------- 347
Query: 383 VTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMII 442
E S LG V + F + D ++I+ + +I +RG N +
Sbjct: 348 ----------ETFESSYLGLCDEVVQAKF--SDDECILIKGTSKHSSSSIILRGANDYSL 395
Query: 443 EEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADAL 502
+E +RS+HD+L VV+ + VV GGG + S EQ A FA AL
Sbjct: 396 DEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAAL 455
Query: 503 ESIPLALAENSGLSPIETLTEVKS 526
IP LA N+ E + +++S
Sbjct: 456 LIIPKTLAVNAAKDSSELVAKLRS 479
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 168/562 (29%), Positives = 270/562 (48%), Gaps = 75/562 (13%)
Query: 35 AIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMV 94
A+ +I AA+ + + L+T+LGPKG KM+VS GD+ +T DG +L M + H A L+
Sbjct: 11 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 70
Query: 95 QLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
+++ +QDD GDGTT V++ G LL+QA+ + +G+HP I +GFE A + A++ LE +
Sbjct: 71 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK 130
Query: 155 DSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVM-AVADLEKRDVNFELIKV 213
S ++ E LI A T+L +K+ H ++A++ AV+ ++ ++K+D +L V
Sbjct: 131 VSKEMDR---ETLIDVARTSLRTKV----HAELADVLTEAVVDSILAIKKQDEPIDLFMV 183
Query: 214 E-GKVGGKLE-DTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN--LD 269
E ++ K E DT L++G+V+D HP M K + D ILTC KT+ N
Sbjct: 184 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDA--YILTCNVSLEYEKTEVNSGFF 241
Query: 270 VQSVEDYKELRKYEQEKFASMVDKV-----KATGAT----LAICQWGFDDEANHLLLQKQ 320
+S E+ ++L K E++ V K+ K G + + I Q G D + L ++
Sbjct: 242 YKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEG 301
Query: 321 LPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELI 380
+ A+R ++E + + GG + ++L + L
Sbjct: 302 IIALRRAKRRNMERLTLACGGIALNSLDDLNPDCL------------------------- 336
Query: 381 AIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKM 440
LG AG V E + G K IE+C N ++VT+ I+G NK
Sbjct: 337 -------------------LGHAG-VYEYTLGEEK--FTFIEKCNNPRSVTLLIKGPNKH 374
Query: 441 IIEEAKRSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFAD 500
+ + K +I D L V+N + + VV G G + Q +AFAD
Sbjct: 375 TLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFAD 434
Query: 501 ALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDM--KQQNVIEALR 558
AL IP LA+NSG ETL +V++ E +G+D LN M + + +
Sbjct: 435 ALLIIPKVLAQNSGFDLQETLVKVQAEH-SESGQLVGVD--LNTGEPMVAAEAGIWDNYC 491
Query: 559 SKKQQILLSTQLVKMILKIDDI 580
KKQ + T + IL +D+I
Sbjct: 492 VKKQLLHSCTVIATNILLVDEI 513
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 144/588 (24%), Positives = 261/588 (44%), Gaps = 83/588 (14%)
Query: 35 AIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMV 94
A+K ++ +A+ + + L+T+LGPKG KM+V G++ +T DG +L M + A L+
Sbjct: 18 ALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIA 77
Query: 95 QLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
+ + +QD+ GDGTT VV L G LL QA + +G+HP I DGFE+A + ++K L
Sbjct: 78 RAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFL---- 133
Query: 155 DSFPVNPDNL----EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFEL 210
D F ++ NL E L++ A ++L +K+ + I +AV++V D + +++ +
Sbjct: 134 DEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHM 193
Query: 211 IKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDV 270
+++ +DT +KG+V+D HP MP +++ + IL E + +
Sbjct: 194 VEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFY 253
Query: 271 QSVEDYKEL----RKYEQEKFASMVD-KVKATG-----ATLAICQWGFDDEANHLLLQKQ 320
S + +L RK+ K ++D K + G + I Q G D + + +
Sbjct: 254 SSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHN 313
Query: 321 LPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELI 380
+ A+R ++E + +VTGG E+L+ + LG +GL Q
Sbjct: 314 ILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQ----------------- 356
Query: 381 AIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKM 440
E + EK + E + K+ TI I+G
Sbjct: 357 ------------ETIGEEKF------------------TYVTENTDPKSCTILIKGSTHY 386
Query: 441 IIEEAKRSIHDALCVVRNLVTENRVVYGGGXXX-XXXXXXXXXXXDKISS--IEQYAFRA 497
+ + K ++ D L V N++ + ++ G G +K+ + + A
Sbjct: 387 ALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEA 446
Query: 498 FADALESIPLALAENSGLSPIETLT----EVKSRQVKEVNPALGIDCMLNGTNDMKQQNV 553
FA+AL IP L +NSG P++ L E+ Q + +G+D + + D + +
Sbjct: 447 FAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGI 506
Query: 554 IEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSME 601
++ R + I +T + +L +CDE + A ++ E
Sbjct: 507 WDSYRVLRNAITGATGIASNLL-----------LCDELLRAGRSTLKE 543
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 144/551 (26%), Positives = 255/551 (46%), Gaps = 57/551 (10%)
Query: 34 DAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLM 93
+A+ +I A K +A T +T+ GP G++KM+++ + VTND ATIL+ ++V H AK++
Sbjct: 11 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 70
Query: 94 VQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETI 153
V S Q+ E+GDGT V+V AGALLE AE LL G+ + +G+E+A C H E +
Sbjct: 71 VMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIA--CKKAH-EIL 127
Query: 154 ADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQ---MAEIAVNAVMAVADLEKRDVNFEL 210
D + NL + + + + L + +++K + +A++ A +++ + N +
Sbjct: 128 PDLVCCSAKNLRDVDEVS-SLLHTSVMSKQYGNEVFLAKLIAQACVSIFP-DSGHFNVDN 185
Query: 211 IKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDV 270
I+V +G + + ++ G+V K+ ++D K+A+ +CPF+ +TK + +
Sbjct: 186 IRVCKILGSGVHSSSVLHGMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITETKGTVLI 243
Query: 271 QSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGP 330
+S E+ K E+ + V + TGA + + D A H + + VR
Sbjct: 244 KSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKW 303
Query: 331 DIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVP 390
D+ + G +PR E++ GH D
Sbjct: 304 DLRRLCKTVGATALPRLNPPVLEEM-----------------GHCD-------------- 332
Query: 391 RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIH 450
S L + G + + F K E+ TI +RG ++++ +R++
Sbjct: 333 ------SVYLSEVGDTQVVVFKHEK---------EDGAISTIVLRGSTDNLMDDIERAVD 377
Query: 451 DALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPLALA 510
D + + L + R+V GGG + +EQYA + FA+A E+IP ALA
Sbjct: 378 DGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALA 437
Query: 511 ENSGLSPIETLTEVKS-RQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQ 569
ENSG+ E ++++ + Q N L I+ + DM + V++ K I L+T
Sbjct: 438 ENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATN 497
Query: 570 LVKMILKIDDI 580
+L++D I
Sbjct: 498 AAVTVLRVDQI 508
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 135/563 (23%), Positives = 259/563 (46%), Gaps = 65/563 (11%)
Query: 36 IKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQ 95
IKS I A + + TS+GP G +K++V+ G + +TND AT+L+ +D+ H K++V
Sbjct: 29 IKS-IAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVM 87
Query: 96 LSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIAD 155
++ Q ++GDGT V++LAG LL +E L+ G+ + I G+ +A + +K L+ +
Sbjct: 88 ATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVV 147
Query: 156 SFPVNPDNLEPLIKTAMTTLGSKIINK--CHRQMAEIAVNAVMAVADL--EKRDVNFELI 211
+ ++ L+K + SK ++ AV+ V+ VA E N + I
Sbjct: 148 GEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSI 207
Query: 212 KVEGKVGGKLEDTMLVKGVVIDKDF-SHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDV 270
+V +GG L ++ ++KG+V +++ H + E + K+A+ TCP + +TK + +
Sbjct: 208 RVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLL 267
Query: 271 QSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGP 330
+ ++ + K E+++ +M+ ++ G + G + A H L + + ++
Sbjct: 268 HNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKF 327
Query: 331 DIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIV-TGGRIV 389
++ + V G +PR T E+LG +E + + GG V
Sbjct: 328 ELRRLCRVCGATPLPRLGAPTPEELGL-------------------VETVKTMEIGGDRV 368
Query: 390 PRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSI 449
F++ E+ E S+ TI +RG + +++ +R+I
Sbjct: 369 TVFKQ---------------------------EQGEISRTSTIILRGATQNNLDDIERAI 401
Query: 450 HDALCVVRNLV--TENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIPL 507
D + V+ L+ + +++ G G ++ + Q A + FA A E +P
Sbjct: 402 DDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPR 461
Query: 508 ALAENSGLSPIETL---------TEVKSRQVKEVNPALGIDCMLN-GTNDMKQQNVIEAL 557
LAE +GL E L TE + + + + ID + G D++++N+ + L
Sbjct: 462 TLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDML 521
Query: 558 RSKKQQILLSTQLVKMILKIDDI 580
+KK I ++T+ +L ID I
Sbjct: 522 ATKKFAINVATEAATTVLSIDQI 544
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 73/130 (56%)
Query: 229 GVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFA 288
G+++DK+ HP MP ++D K+A+L P E +P+ NL ++ ++ E+
Sbjct: 3 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLR 62
Query: 289 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFE 348
MVDK+K+ GA + I Q G DD A H L + + AVR V D++ +A TG IV +
Sbjct: 63 EMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTID 122
Query: 349 ELTSEKLGKA 358
E++S LG A
Sbjct: 123 EISSSDLGTA 132
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%)
Query: 229 GVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFA 288
G+VIDK+ H +MP +++ K+A++ E + + + + + ++ E F
Sbjct: 3 GIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFK 62
Query: 289 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFE 348
MV+K+K +GA + +CQ G DD A H L ++ + AVR V D+E +A TG +IV +
Sbjct: 63 QMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLD 122
Query: 349 ELTSEKLGKA 358
+LT LG+A
Sbjct: 123 DLTPSVLGEA 132
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 221 LEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELR 280
+ED+ +++GV+I+KD +HP+M + +++ ++ +L E + +++ ++++ ED+ +
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRIL 60
Query: 281 KYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTG 340
+ E+E + + + + I + G D A H L++ + A+R V D IA G
Sbjct: 61 QMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACG 120
Query: 341 GRIVPRFEELTSEKLGK-AGL------GNQFW 365
RIV R EEL + +G AGL G++++
Sbjct: 121 ARIVSRPEELREDDVGTGAGLLEIKKIGDEYF 152
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 46 IANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQD 101
+AN +K +LGP+G + ++ G T+T DG T+ K ++++ + A+L+ +++ +
Sbjct: 22 VANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTN 81
Query: 102 DEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
D GDGTT VLA A++ + + G +P+ + G E A + AV+ ++ +A
Sbjct: 82 DVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALA 134
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 107/453 (23%), Positives = 191/453 (42%), Gaps = 88/453 (19%)
Query: 46 IANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQD 101
+A+ +K +LGPKG + ++ S G +T DG ++ K +++ + A+++ +++ +
Sbjct: 23 LADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTN 82
Query: 102 DEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNP 161
DE GDGTT VLA A++ + + G++P+ + G ++A V+ +++ A PVN
Sbjct: 83 DEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAAR--PVN- 139
Query: 162 DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 221
D+ E ++ G I + +A+ +R N +I VE G +
Sbjct: 140 DSSEVAQVGTISANGESFIGQQ--------------IAEAMQRVGNEGVITVEENKGMET 185
Query: 222 EDTMLVKGVVIDKDFSHP-------QMPKELRDVKLAI---LTCPFEPPRPKTKHNLDVQ 271
E +V+G+ D+ + P +M EL D + + +P P + + Q
Sbjct: 186 E-VEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQ 244
Query: 272 S-----VEDYKELRKYEQEKFASM-VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVR 325
ED E E A++ V+K++ A+ GF D +L
Sbjct: 245 KPLLIVAED------VEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAML--------- 289
Query: 326 WVGGPDIELIAIVTGGRIVP-----RFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELI 380
+ IAI+TGG+++ + E +T + LG+A + N+ +
Sbjct: 290 -------QDIAILTGGQVISEDLGMKLENVTIDMLGRA---KKVSINKDNT--------- 330
Query: 381 AIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDH---MLVIEECENSKAVTIFIRGG 437
IV G E S+ +R+ TT D+ L + + V + GG
Sbjct: 331 TIVDGAGEKAEIEARVSQ-------IRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGG 383
Query: 438 NKMI-IEEAKRSIHDALCVVRNLVTENRVVYGG 469
I ++E K + DAL R V E VV GG
Sbjct: 384 MTEIEVKERKDRVDDALNATRAAVQEGIVVGGG 416
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 8 FGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 67
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 68 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAA 127
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 128 VEELKALS 135
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 8 FGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 67
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 68 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAA 127
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 128 VEELKALS 135
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 32 GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI-- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 90 --AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A AV
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 127
Query: 148 KHLETIA 154
+ L+ ++
Sbjct: 128 EELKALS 134
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 8 FGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 67
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 68 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVA 127
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 128 VEELKALS 135
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI- 89
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 7 FGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFE 66
Query: 90 ---AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A A
Sbjct: 67 NMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVA 126
Query: 147 VKHLETIA 154
V+ L+ ++
Sbjct: 127 VEELKALS 134
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 46 IANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQD 101
+A+ +K +LGPKG + ++ G T+TNDG +I K ++++ A+L+ ++++ D
Sbjct: 22 LADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTD 81
Query: 102 DEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHL 150
D GDGTT VLA AL+ + + G +P+ + G E A + + L
Sbjct: 82 DVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETL 130
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 68 GDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAE 123
G T+TNDG +I K ++++ A+L+ ++++ DD GDGTT VLA AL+ +
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 124 HLLDKGIHPIRIADGFELAAQCAVKHL 150
+ G +P+ + G E A + + L
Sbjct: 62 RNVAAGANPLGLKRGIEKAVEKVTETL 88
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 400 LGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEE 444
LG G ++ ISFG +D+ + I+ C+ A+ +R M + E
Sbjct: 108 LGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTE 152
>pdb|3GUX|A Chain A, Crystal Structure Of A Putative Zn-Dependent Exopeptidase
(Bvu_1317) From Bacteroides Vulgatus Atcc 8482 At 1.80 A
Resolution
pdb|3GUX|B Chain B, Crystal Structure Of A Putative Zn-Dependent Exopeptidase
(Bvu_1317) From Bacteroides Vulgatus Atcc 8482 At 1.80 A
Resolution
Length = 314
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 509 LAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDM 548
L N G S + L E+ +RQ+++ PALGID + + D
Sbjct: 125 LGVNDGASGVGVLLEI-ARQIQKEQPALGIDIVFFDSEDY 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,385,642
Number of Sequences: 62578
Number of extensions: 714657
Number of successful extensions: 2138
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1918
Number of HSP's gapped (non-prelim): 93
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)